BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030429
(177 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 245 bits (625), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 109/169 (64%), Positives = 142/169 (84%)
Query: 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 65
+LF+K+EMEL+L+GLQ +GKT+ VN IA+G ++EDMIPTVGFNMRK+TKGNVTIKLWD+G
Sbjct: 25 ALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIG 84
Query: 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
GQ RFR+MWERYCRGVSAI+Y+VDAAD++ + +++ELH LL KP L GIP+LVLGNK D
Sbjct: 85 GQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRD 144
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 174
AL ++ L++++ L +I DRE+CCY ISCK+ NID + WLI+HSK
Sbjct: 145 LPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 193
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 244 bits (622), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 108/166 (65%), Positives = 139/166 (83%)
Query: 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR 69
K+EMEL+L+GLQ +GKT+ VN IA+G +SEDMIPTVGFNMRKVTKGNVTIK+WD+GGQ R
Sbjct: 20 KEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPR 79
Query: 70 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129
FR+MWERYCRGV+AI+Y++DAADR+ + +R+ELH LL KP L GIP+LVLGNK D A
Sbjct: 80 FRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNA 139
Query: 130 LSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 175
L ++ L++++ L +I DRE+CCY ISCK+ NID + WLI+HSK+
Sbjct: 140 LDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS 185
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 241 bits (615), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 107/168 (63%), Positives = 140/168 (83%)
Query: 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR 69
K+EMEL+L+GLQ +GKT+ VN IA+G ++EDMIPTVGFNMRK+TKGNVTIKLWD+GGQ R
Sbjct: 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPR 79
Query: 70 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129
FR+MWERYCRGVSAI+Y+VDAAD++ + +++ELH LL KP L GIP+LVLGNK D A
Sbjct: 80 FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139
Query: 130 LSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
L ++ L++++ L +I DRE+CCY ISCK+ NID + WLI+HSK+ +
Sbjct: 140 LDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRR 187
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 114 bits (285), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 94/165 (56%), Gaps = 1/165 (0%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF 70
+EM + ++GL AGKT+++ + G IPT+GFN+ VT N+ ++WDLGGQ
Sbjct: 1 REMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGQTSI 59
Query: 71 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 130
R W Y A++YVVD+ DRD + I++SEL +L + L L+V NK D +A+
Sbjct: 60 RPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM 119
Query: 131 SKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 175
+ + + LGL ++ DR+ + S +D ++WL++ K+
Sbjct: 120 TPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 164
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 113 bits (283), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 96/168 (57%), Gaps = 1/168 (0%)
Query: 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG 66
L K+EM + ++GL AGKTS++ + G IPT+GFN+ V N++ +WD+GG
Sbjct: 12 LLGKKEMRILMVGLDAAGKTSILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGG 70
Query: 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 126
Q + R +W Y + AI++VVD+ DRD + AR EL ++L + + LLV NK D
Sbjct: 71 QDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDL 130
Query: 127 SEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 174
+A+S + ++LGL++I +R+ C + + +DWL + K
Sbjct: 131 PQAMSISEVTEKLGLQTIKNRKWYCQTSCATNGDGLYEGLDWLADNLK 178
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 112 bits (281), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 88/163 (53%), Gaps = 1/163 (0%)
Query: 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG 66
LF K+EM + ++GL AGKT+++ + G IPT+GFN+ V N++ +WD+GG
Sbjct: 15 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGG 73
Query: 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 126
Q + R +W Y + +++VVD+ DRD V AR ELH +L + L LLV NK D
Sbjct: 74 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 133
Query: 127 SEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 169
A++ + D+LGL S+ R + +DWL
Sbjct: 134 PNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 176
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 111 bits (277), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 93/165 (56%), Gaps = 1/165 (0%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF 70
+EM + ++GL AGKT+++ + G IPT+GFN+ VT N+ ++WDLGG
Sbjct: 3 REMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGLTSI 61
Query: 71 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 130
R W Y A++YVVD+ DRD + I++SEL +L + L L+V NK D +A+
Sbjct: 62 RPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM 121
Query: 131 SKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 175
+ + + LGL ++ DR+ + S +D ++WL++ K+
Sbjct: 122 TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 166
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 110 bits (274), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 82/141 (58%), Gaps = 1/141 (0%)
Query: 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG 66
+F +EM + ++GL AGKT+++ + G S IPTVGFN+ VT NV +WD+GG
Sbjct: 8 IFGNKEMRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGG 66
Query: 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 126
Q + R +W Y G +++VVD ADRD + AR ELH ++ + +L+ NK D
Sbjct: 67 QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 126
Query: 127 SEALSKQALVDQLGLESITDR 147
+A+ + ++LGL I DR
Sbjct: 127 PDAMKPHEIQEKLGLTRIRDR 147
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 110 bits (274), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 82/141 (58%), Gaps = 1/141 (0%)
Query: 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG 66
+F +EM + ++GL AGKT+++ + G S IPTVGFN+ VT NV +WD+GG
Sbjct: 7 IFGNKEMRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGG 65
Query: 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 126
Q + R +W Y G +++VVD ADRD + AR ELH ++ + +L+ NK D
Sbjct: 66 QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 125
Query: 127 SEALSKQALVDQLGLESITDR 147
+A+ + ++LGL I DR
Sbjct: 126 PDAMKPHEIQEKLGLTRIRDR 146
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 90/175 (51%), Gaps = 1/175 (0%)
Query: 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLW 62
L LF K+EM + ++GL AGKT+++ + G IPT+GFN+ V N++ +W
Sbjct: 8 LFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVW 66
Query: 63 DLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGN 122
D+GGQ + R +W Y + +++VVD+ DR+ V AR EL +L + L LLV N
Sbjct: 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFAN 126
Query: 123 KIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
K D A++ + D+LGL S+ R + +DWL + K
Sbjct: 127 KQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 181
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 107 bits (268), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 90/175 (51%), Gaps = 1/175 (0%)
Query: 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLW 62
L LF K+EM + ++GL AGKT+++ + G IPT+GFN+ V N++ +W
Sbjct: 7 LFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVW 65
Query: 63 DLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGN 122
D+GGQ + R +W Y + +++VVD+ DR+ V AR EL +L + L LLV N
Sbjct: 66 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFAN 125
Query: 123 KIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
K D A++ + D+LGL S+ R + +DWL + K
Sbjct: 126 KQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 180
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 107 bits (266), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 80/138 (57%), Gaps = 1/138 (0%)
Query: 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR 69
+EM + ++GL AGKT+++ + G S IPTVGFN+ VT NV +WD+GGQ +
Sbjct: 320 NKEMRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDK 378
Query: 70 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129
R +W Y G +++VVD ADRD + AR ELH ++ + +L+ NK D +A
Sbjct: 379 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 438
Query: 130 LSKQALVDQLGLESITDR 147
+ + ++LGL I DR
Sbjct: 439 MKPHEIQEKLGLTRIRDR 456
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 107 bits (266), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 81/141 (57%), Gaps = 1/141 (0%)
Query: 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG 66
+F +EM + ++GL AGKT+++ + G S IPTVGFN+ VT NV +WD+GG
Sbjct: 8 IFGNKEMRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGG 66
Query: 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 126
+ R +W Y G +++VVD ADRD + AR ELH ++ + +L+ NK D
Sbjct: 67 LDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 126
Query: 127 SEALSKQALVDQLGLESITDR 147
+A+ + ++LGL I DR
Sbjct: 127 PDAMKPHEIQEKLGLTRIRDR 147
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 106 bits (265), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 89/171 (52%), Gaps = 1/171 (0%)
Query: 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG 66
LF K+EM + ++GL AGKT+++ + G IPT+GFN+ V N++ +WD+GG
Sbjct: 160 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGG 218
Query: 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 126
Q + R +W Y + +++VVD+ DR+ V AR EL +L + L LLV NK D
Sbjct: 219 QDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 278
Query: 127 SEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
A++ + D+LGL S+ R + +DWL + K
Sbjct: 279 PNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 329
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 106 bits (265), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 83/145 (57%), Gaps = 1/145 (0%)
Query: 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLW 62
L +LF +EM + ++GL AGKT+++ + G IPT+GFN+ V N++ +W
Sbjct: 8 LFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVI-TTIPTIGFNVETVQYKNISFTVW 66
Query: 63 DLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGN 122
D+GGQ R R++W Y R +++VVD+ DR + AR + +L + L LV N
Sbjct: 67 DVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFAN 126
Query: 123 KIDKSEALSKQALVDQLGLESITDR 147
K D EA+S + ++LGL SI +R
Sbjct: 127 KQDLPEAMSAAEITEKLGLHSIRNR 151
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 78/135 (57%), Gaps = 1/135 (0%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT 72
M + ++GL AGKT+++ + G S IPTVGFN+ VT NV +WD+GGQ + R
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRP 59
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 132
+W Y G +++VVD ADRD + AR ELH ++ + +L+ NK D +A+
Sbjct: 60 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP 119
Query: 133 QALVDQLGLESITDR 147
+ ++LGL I DR
Sbjct: 120 HEIQEKLGLTRIRDR 134
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 78/135 (57%), Gaps = 1/135 (0%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT 72
M + ++GL AGKT+++ + G S IPTVGFN+ VT NV +WD+GGQ + R
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRP 59
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 132
+W Y G +++VVD ADRD + AR ELH ++ + +L+ NK D +A+
Sbjct: 60 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP 119
Query: 133 QALVDQLGLESITDR 147
+ ++LGL I DR
Sbjct: 120 HEIQEKLGLTRIRDR 134
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 89/171 (52%), Gaps = 1/171 (0%)
Query: 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG 66
LF K+++ + ++GL AGKT+++ + G IPT+GFN+ V N++ +WD+GG
Sbjct: 12 LFQKKDVRILMVGLDAAGKTTILYKVKLGEVVT-TIPTIGFNVETVEFRNISFTVWDVGG 70
Query: 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 126
Q + R +W Y +++VVD+ DR+ + AR ELH ++ + L +LV NK D
Sbjct: 71 QDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDL 130
Query: 127 SEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
A+S + ++L L +I +R + DWL H AK
Sbjct: 131 PNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWLTTHLNNAK 181
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 83/145 (57%), Gaps = 1/145 (0%)
Query: 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLW 62
L +LF +EM + ++GL AGKT+++ + G IPT+GFN+ V N++ +W
Sbjct: 8 LFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVI-TTIPTIGFNVETVQYKNISFTVW 66
Query: 63 DLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGN 122
D+GGQ R R++W Y R +++V+D+ DR + AR + +L + L LV N
Sbjct: 67 DVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFAN 126
Query: 123 KIDKSEALSKQALVDQLGLESITDR 147
K D EA+S + ++LGL SI +R
Sbjct: 127 KQDLPEAMSAAEITEKLGLHSIRNR 151
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 104 bits (259), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 78/136 (57%), Gaps = 1/136 (0%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR 71
EM + ++GL AGKT+++ + G S IPTVGFN+ VT NV +WD+GG + R
Sbjct: 3 EMRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIR 61
Query: 72 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS 131
+W Y G +++VVD ADRD + AR ELH ++ + +L+ NK D +A+
Sbjct: 62 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 121
Query: 132 KQALVDQLGLESITDR 147
+ ++LGL I DR
Sbjct: 122 PHEIQEKLGLTRIRDR 137
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 104 bits (259), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 78/136 (57%), Gaps = 1/136 (0%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR 71
EM + ++GL AGKT+++ + G S IPTVGFN+ VT NV +WD+GG + R
Sbjct: 2 EMRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIR 60
Query: 72 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS 131
+W Y G +++VVD ADRD + AR ELH ++ + +L+ NK D +A+
Sbjct: 61 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 120
Query: 132 KQALVDQLGLESITDR 147
+ ++LGL I DR
Sbjct: 121 PHEIQEKLGLTRIRDR 136
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 103 bits (258), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 89/161 (55%), Gaps = 1/161 (0%)
Query: 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR 69
++E+ L ++GL NAGKT+++ G + + PT+GFN++ + + +WD+GGQ+
Sbjct: 14 ERELRLLMLGLDNAGKTTILKKF-NGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKS 72
Query: 70 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129
R+ W Y +++VVD+ADR + + EL LL++ L+G LL+ NK D A
Sbjct: 73 LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 132
Query: 130 LSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLI 170
LS A+ + L L+SI C S N+ IDWL+
Sbjct: 133 LSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWLL 173
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 103 bits (256), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 89/167 (53%), Gaps = 1/167 (0%)
Query: 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLW 62
L LF K++M + ++GL AGKT+++ + G IPT+GFN+ V N+ +W
Sbjct: 8 LFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNICFTVW 66
Query: 63 DLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGN 122
D+GGQ R R +W+ Y + +++VVD+ DR+ + EL ++L+ L LL+ N
Sbjct: 67 DVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFAN 126
Query: 123 KIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 169
K D A++ + D+LGL+S+ +R + +DWL
Sbjct: 127 KQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWL 173
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 103 bits (256), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 103/173 (59%), Gaps = 9/173 (5%)
Query: 11 QEMELSLIGLQNAGKTSLVNTI-ATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR 69
+E+ + +GL N+GKT+++N + + S++++PT+GF++ K +++ ++D+ GQ R
Sbjct: 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGR 79
Query: 70 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSG--IPLLVLGNKIDKS 127
+R +WE Y + AI++V+D++DR + +A+ EL LL P + IP+L NK+D
Sbjct: 80 YRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR 139
Query: 128 EALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV---IDWLIKHSKTAK 177
+A++ + L LE+I D+ + I D+I + + +DWL +T K
Sbjct: 140 DAVTSVKVSQLLCLENIKDKP---WHICASDAIKGEGLQEGVDWLQDQIQTVK 189
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 82/145 (56%), Gaps = 1/145 (0%)
Query: 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLW 62
L +LF +EM + ++GL AGKT+++ + G IPT+GFN+ V N++ +W
Sbjct: 8 LFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVI-TTIPTIGFNVECVQYCNISFTVW 66
Query: 63 DLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGN 122
D+GGQ R R++W Y +++VVD+ DR + AR + +L + L LV N
Sbjct: 67 DVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFAN 126
Query: 123 KIDKSEALSKQALVDQLGLESITDR 147
K D EA+S + ++LGL SI +R
Sbjct: 127 KQDLPEAMSAAEITEKLGLHSIRNR 151
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 86/167 (51%), Gaps = 1/167 (0%)
Query: 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLW 62
L +F K++M + ++GL AGKT+++ + G IPT+GFN+ V N+ +W
Sbjct: 20 LFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNICFTVW 78
Query: 63 DLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGN 122
D+GGQ + R +W Y + +++VVD+ DR+ V + EL ++L + L LLV N
Sbjct: 79 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFAN 138
Query: 123 KIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 169
K D A+ L D+LGL+ + R + +DWL
Sbjct: 139 KQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWL 185
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 100 bits (250), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 73/130 (56%), Gaps = 1/130 (0%)
Query: 18 IGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERY 77
+GL AGKT+++ + G S IPTVGFN+ VT NV +WD+GGQ + R +W Y
Sbjct: 6 LGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHY 64
Query: 78 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVD 137
G +++VVD ADRD + AR ELH ++ +L+ NK D +A + +
Sbjct: 65 YTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPDAXKPHEIQE 124
Query: 138 QLGLESITDR 147
+LGL I DR
Sbjct: 125 KLGLTRIRDR 134
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 100 bits (249), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 1/165 (0%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT 72
M + ++GL AGKT+++ + G IPT+GFN+ V N++ +WD+GGQ + R
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRP 59
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 132
+W Y + +++VVD+ DR+ V AR EL +L + L LLV NK D A++
Sbjct: 60 LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA 119
Query: 133 QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
+ D+LGL S+ R + +DWL + K
Sbjct: 120 AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 164
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 100 bits (248), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 77/135 (57%), Gaps = 1/135 (0%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT 72
M + ++GL AGKT+++ + G IPT+GFN+ V N++ +WD+GGQ R R+
Sbjct: 1 MRILMVGLDGAGKTTVLYKLKLGEVI-TTIPTIGFNVETVQYKNISFTVWDVGGQDRIRS 59
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 132
+W Y R +++VVD+ DR + AR + +L + L LV NK D EA+S
Sbjct: 60 LWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSA 119
Query: 133 QALVDQLGLESITDR 147
+ ++LGL SI +R
Sbjct: 120 AEITEKLGLHSIRNR 134
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 84/160 (52%), Gaps = 1/160 (0%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF 70
+E+ + ++GL AGKT+++ + G PT+GFN+ ++ N+ + +WDLGGQ
Sbjct: 17 KELRILILGLDGAGKTTILYRLQIGEVVTTK-PTIGFNVETLSYKNLKLNVWDLGGQTSI 75
Query: 71 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 130
R W Y +A+++VVD+ D+D + A ELH +L + L LLV NK D+ AL
Sbjct: 76 RPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL 135
Query: 131 SKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLI 170
S + +L L + DR S I +DWLI
Sbjct: 136 SASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLI 175
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 92/164 (56%), Gaps = 7/164 (4%)
Query: 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR 69
++E+ L ++GL NAGKT+++ G + + PT+GFN++ + + +WD+GGQ+
Sbjct: 16 ERELRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKS 74
Query: 70 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129
R+ W Y +++VVD+ADR + + EL LL++ L+G LL+ NK D A
Sbjct: 75 LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 134
Query: 130 LSKQALVDQLGLESITD---REVCCYMISCKDSINIDAVIDWLI 170
LS A+ + L L+SI R C ++ +D + IDWL+
Sbjct: 135 LSXNAIQEALELDSIRSHHWRIQGCSAVTGEDLL---PGIDWLL 175
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 92/164 (56%), Gaps = 7/164 (4%)
Query: 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR 69
++E+ L ++GL NAGKT+++ G + + PT+GFN++ + + +WD+GGQ+
Sbjct: 16 ERELRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKS 74
Query: 70 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129
R+ W Y +++VVD+ADR + + EL LL++ L+G LL+ NK D A
Sbjct: 75 LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 134
Query: 130 LSKQALVDQLGLESITD---REVCCYMISCKDSINIDAVIDWLI 170
LS A+ + L L+SI R C ++ +D + IDWL+
Sbjct: 135 LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL---PGIDWLL 175
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 1/165 (0%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT 72
M + ++GL AGKT+++ + G IPT+GFN+ V N++ +WD+GG + R
Sbjct: 3 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGLDKIRP 61
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 132
+W Y + +++VVD+ DR+ V AR EL +L + L LLV NK D A++
Sbjct: 62 LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA 121
Query: 133 QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
+ D+LGL S+ R + +DWL + K
Sbjct: 122 AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 166
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 96.7 bits (239), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 88/165 (53%), Gaps = 1/165 (0%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF 70
+E + ++GL AGKT+++ + G IPT+GFN+ VT N+ ++WDLGG
Sbjct: 6 REXRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNVETVTYKNLKFQVWDLGGLTSI 64
Query: 71 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 130
R W Y A++YVVD+ DRD + I++SEL L + L L+V NK D +A
Sbjct: 65 RPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAXLEEEELRKAILVVFANKQDXEQAX 124
Query: 131 SKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 175
+ + LGL ++ DR+ + S +D +WL++ K+
Sbjct: 125 TSSEXANSLGLPALKDRKWQIFKTSATKGTGLDEAXEWLVETLKS 169
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 83/155 (53%), Gaps = 1/155 (0%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWER 76
++GL NAGKTS++ + G + N+ + N++ ++WDLGGQ R W
Sbjct: 27 MLGLDNAGKTSILYRLHLGDVVTTVPTVG-VNLETLQYKNISFEVWDLGGQTGVRPYWRC 85
Query: 77 YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALV 136
Y A++YVVD+ DRD + +A+ EL+ LL + L LL+ NK D +A S+ +
Sbjct: 86 YFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIA 145
Query: 137 DQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
+QLG+ SI +R S K + +DWL++
Sbjct: 146 EQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVE 180
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 88/161 (54%), Gaps = 7/161 (4%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT 72
+ L ++GL NAGKT+++ G + + PT+GFN++ + + +WD+GG + R+
Sbjct: 2 LRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGLKSLRS 60
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 132
W Y +++VVD+ADR + + EL LL++ L+G LL+ NK D ALS
Sbjct: 61 YWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC 120
Query: 133 QALVDQLGLESITD---REVCCYMISCKDSINIDAVIDWLI 170
A+ + L L+SI R C ++ +D + IDWL+
Sbjct: 121 NAIQEALELDSIRSHHWRIQGCSAVTGEDLL---PGIDWLL 158
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 76/149 (51%), Gaps = 5/149 (3%)
Query: 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG 66
LF QE ++ ++GL NAGKT+++ + PT+G N+ ++ N +WD+GG
Sbjct: 11 LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVINNTRFLMWDIGG 69
Query: 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 126
Q R+ W Y ++ VVD+ DR+ + + R EL+++L L LL+ NK D
Sbjct: 70 QESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 129
Query: 127 SEALSKQALVDQLGLESITDR----EVCC 151
E ++ + L L SI D + CC
Sbjct: 130 KECMTVAEISQFLKLTSIKDHQWHIQACC 158
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 76/149 (51%), Gaps = 5/149 (3%)
Query: 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG 66
LF QE ++ ++GL NAGKT+++ + PT+G N+ ++ N +WD+GG
Sbjct: 11 LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVINNTRFLMWDIGG 69
Query: 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 126
Q R+ W Y ++ VVD+ DR+ + + R EL+++L L LL+ NK D
Sbjct: 70 QESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 129
Query: 127 SEALSKQALVDQLGLESITDR----EVCC 151
E ++ + L L SI D + CC
Sbjct: 130 KECMTVAEISQFLKLTSIKDHQWHIQACC 158
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 89.7 bits (221), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 82/152 (53%), Gaps = 7/152 (4%)
Query: 22 NAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGV 81
NAGKT+++ G + + PT+GFN++ + + +WD+GGQ+ R+ W Y
Sbjct: 28 NAGKTTILKKF-NGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFEST 86
Query: 82 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGL 141
+++VVD+ADR + EL LL++ L+G LL+ NK D ALS A+ + L L
Sbjct: 87 DGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEALEL 146
Query: 142 ESITD---REVCCYMISCKDSINIDAVIDWLI 170
+SI R C ++ +D + IDWL+
Sbjct: 147 DSIRSHHWRIQGCSAVTGEDLL---PGIDWLL 175
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 86/167 (51%), Gaps = 1/167 (0%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF 70
QE+ + L+GL NAGKT+L+ +A+ S + PT GFN++ V + +WD+GGQR+
Sbjct: 15 QEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIKSVQSQGFKLNVWDIGGQRKI 73
Query: 71 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 130
R W Y ++YV+D+ADR EL ELL + LS +P+L+ NK D A
Sbjct: 74 RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA 133
Query: 131 SKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
+ + L L +I DR S + ++W+ K+ K
Sbjct: 134 PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAKK 180
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 86/167 (51%), Gaps = 1/167 (0%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF 70
QE+ + L+GL NAGKT+L+ +A+ S + PT GFN++ V + +WD+GGQR+
Sbjct: 16 QEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIKSVQSQGFKLNVWDIGGQRKI 74
Query: 71 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 130
R W Y ++YV+D+ADR EL ELL + LS +P+L+ NK D A
Sbjct: 75 RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA 134
Query: 131 SKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
+ + L L +I DR S + ++W+ K+ K
Sbjct: 135 PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAKK 181
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 83/137 (60%), Gaps = 1/137 (0%)
Query: 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQR 68
+K+ +L +GL NAGKT+L++ + + +PT+ ++T +T +DLGG
Sbjct: 22 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEELTIAGMTFTTFDLGGHI 80
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128
+ R +W+ Y ++ I+++VD AD + + ++ EL L+ +++ +P+L+LGNKID+ E
Sbjct: 81 QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 140
Query: 129 ALSKQALVDQLGLESIT 145
A+S++ L + GL T
Sbjct: 141 AISEERLREMFGLYGQT 157
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
Query: 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQ 67
+K+ +L +GL NAGKT+L++ + + +PT+ ++T +T +DLGG
Sbjct: 31 LYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEELTIAGMTFTTFDLGGH 89
Query: 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127
+ R +W+ Y ++ I+++VD AD + ++ EL+ L+ ++S +P+L+LGNKID++
Sbjct: 90 EQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRT 149
Query: 128 EALSKQALVDQLGLESIT 145
+A+S++ L + GL T
Sbjct: 150 DAISEEKLREIFGLYGQT 167
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 82/134 (61%), Gaps = 1/134 (0%)
Query: 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQ 67
+K+ +L +GL NAGKT+L++ + + +PT+ ++T +T +DLGG
Sbjct: 18 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEELTIAGMTFTTFDLGGH 76
Query: 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127
+ R +W+ Y ++ I+++VD AD + + ++ EL L+ +++ +P+L+LGNKID+
Sbjct: 77 IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 136
Query: 128 EALSKQALVDQLGL 141
EA+S++ L + GL
Sbjct: 137 EAISEERLREMFGL 150
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 86/169 (50%), Gaps = 9/169 (5%)
Query: 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMI-PTVGFNMRKVTKGNVTIKLWDLGGQR 68
K ++++ + GL N+GKT+++N + S I TVG+N+ KG V ++D+GG +
Sbjct: 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAK 74
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMK-------PSLSGIPLLVLG 121
+FR +WE Y + A+++VVD++D + + +SE+ +L P +P L
Sbjct: 75 KFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFA 134
Query: 122 NKIDKSEALSKQALVDQLGLESI-TDREVCCYMISCKDSINIDAVIDWL 169
NK+D + A + LV+ L L ++ D + + + WL
Sbjct: 135 NKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWL 183
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 75/147 (51%), Gaps = 5/147 (3%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF 70
QE ++ ++GL NAGKT+++ + PT+G N+ ++ N +WD+GGQ
Sbjct: 21 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVINNTRFLMWDIGGQESL 79
Query: 71 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 130
R+ W Y ++ VVD+ DR+ + + R EL+++L L LL+ NK D E +
Sbjct: 80 RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM 139
Query: 131 SKQALVDQLGLESITDR----EVCCYM 153
+ + L L SI D + CC +
Sbjct: 140 TVAEISQFLKLTSIKDHQWHIQACCAL 166
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 82/134 (61%), Gaps = 1/134 (0%)
Query: 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQ 67
+K+ +L +GL NAGKT+L++ + + +PT+ ++T +T +DLGG
Sbjct: 12 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEELTIAGMTFTTFDLGGG 70
Query: 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127
+ R +W+ Y ++ I+++VD AD + + ++ EL L+ +++ +P+L+LGNKID+
Sbjct: 71 IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 130
Query: 128 EALSKQALVDQLGL 141
EA+S++ L + GL
Sbjct: 131 EAISEERLREMFGL 144
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 75/147 (51%), Gaps = 5/147 (3%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF 70
QE ++ ++GL NAGKT+++ + PT+G N+ ++ N +WD+GGQ
Sbjct: 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVINNTRFLMWDIGGQESL 78
Query: 71 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 130
R+ W Y ++ VVD+ DR+ + + R EL+++L L LL+ NK D E +
Sbjct: 79 RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM 138
Query: 131 SKQALVDQLGLESITDR----EVCCYM 153
+ + L L SI D + CC +
Sbjct: 139 TVAEISQFLKLTSIKDHQWHIQACCAL 165
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 74/150 (49%), Gaps = 5/150 (3%)
Query: 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 65
SLF QE ++ ++GL NAGKT+++ PT+G N+ ++ N +WD+G
Sbjct: 10 SLFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTS-PTIGSNVEEIVVKNTHFLMWDIG 68
Query: 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
GQ R+ W Y I+ VVD+ DR+ + I + EL+ +L L +L+ NK D
Sbjct: 69 GQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQD 128
Query: 126 KSEALSKQALVDQLGLESITDR----EVCC 151
++ + L L SI D + CC
Sbjct: 129 MKGCMTAAEISKYLTLSSIKDHPWHIQSCC 158
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR 71
E+ + L+GL NAGKT+L+ +A+ S + PT GFN++ V + +WD+GGQR+ R
Sbjct: 4 EVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR 62
Query: 72 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS 131
W Y ++YV+D+ADR EL ELL + LS +P+L+ NK D A
Sbjct: 63 PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP 122
Query: 132 KQALVDQLGLESITDR 147
+ + L L +I DR
Sbjct: 123 ASEIAEGLNLHTIRDR 138
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR 71
E+ + L+GL NAGKT+L+ +A+ S + PT GFN++ V + +WD+GG R+ R
Sbjct: 4 EVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIKSVQSQGFKLNVWDIGGLRKIR 62
Query: 72 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS 131
W Y ++YV+D+ADR EL ELL + LS +P+L+ NK D A
Sbjct: 63 PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP 122
Query: 132 KQALVDQLGLESITDR 147
+ + L L +I DR
Sbjct: 123 ASEIAEGLNLHTIRDR 138
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 78/150 (52%), Gaps = 8/150 (5%)
Query: 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM 73
+L +GL NAGKT+L++ + + + PT ++ GN+ +DLGG + R +
Sbjct: 3 KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTSEELAIGNIKFTTFDLGGHIQARRL 61
Query: 74 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ 133
W+ Y V+ I+++VDAAD + AR EL L L +P ++LGNKID A+S+
Sbjct: 62 WKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEA 121
Query: 134 ALVDQLGLESIT-------DREVCCYMISC 156
L LGL + T R V +M S
Sbjct: 122 ELRSALGLLNTTGSQRIEGQRPVEVFMCSV 151
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 80/155 (51%), Gaps = 8/155 (5%)
Query: 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQR 68
+ + +L +GL NAGKT+L++ + + + PT ++ GN+ +DLGG
Sbjct: 20 WNKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTSEELAIGNIKFTTFDLGGHI 78
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128
+ R +W+ Y V+ I+++VDAAD + AR EL L L +P ++LGNKID
Sbjct: 79 QARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN 138
Query: 129 ALSKQALVDQLGLESIT-------DREVCCYMISC 156
A+S+ L LGL + T R V +M S
Sbjct: 139 AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV 173
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 78/155 (50%), Gaps = 8/155 (5%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQR 68
+L LIG GK+ L+ A Y++ I T+G F +R ++ N T+KL WD GQ
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQE 69
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128
RFRT+ Y RG I+ V D DRDS + + E + + ++ + L++GNK D
Sbjct: 70 RFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQE-IDRYAMENVNKLLVGNKCD--- 125
Query: 129 ALSKQALVDQLGLESITDREVCCYMISCKDSINID 163
+SK+ + G E + S K++ N++
Sbjct: 126 LVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVE 160
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 76/156 (48%), Gaps = 10/156 (6%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQR 68
+L LIG GK+ L+ A Y+E I T+G F +R + TIKL WD GQ
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128
RFRT+ Y RG I+ V D D++S + L E+ S + L++GNK D
Sbjct: 70 RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS-ENVNKLLVGNKSD--- 125
Query: 129 ALSKQALVDQLGLESITDREVCCYM-ISCKDSINID 163
L+ + +VD + D ++ S K++ N++
Sbjct: 126 -LTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVE 160
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 76/156 (48%), Gaps = 10/156 (6%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQR 68
+L LIG GK+ L+ A Y+E I T+G F +R + TIKL WD GQ
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128
RFRT+ Y RG I+ V D D++S + L E+ S + L++GNK D
Sbjct: 70 RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS-ENVNKLLVGNKSD--- 125
Query: 129 ALSKQALVDQLGLESITDREVCCYM-ISCKDSINID 163
L+ + +VD + D ++ S K++ N++
Sbjct: 126 -LTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVE 160
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 88/178 (49%), Gaps = 21/178 (11%)
Query: 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVT-KGN--VTIKLWDL 64
K +++ ++G GKTSL++ YS+ T+G F ++VT G+ T+++WD
Sbjct: 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDT 65
Query: 65 GGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSG---IPLLVLG 121
GQ RF+++ + RG + V D + S +S E L+ +++ P ++LG
Sbjct: 66 AGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILG 125
Query: 122 NKIDKSEA------LSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 173
NKID E+ S Q L LG ++ ++ S K++IN+D + + + +
Sbjct: 126 NKIDAEESKKIVSEKSAQELAKSLG-------DIPLFLTSAKNAINVDTAFEEIARSA 176
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 76/156 (48%), Gaps = 10/156 (6%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQR 68
+L LIG GK+ L+ A Y+E I T+G F +R + TIKL WD GQ
Sbjct: 7 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128
RFRT+ Y RG I+ V D D++S + L E+ S + L++GNK D
Sbjct: 67 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCD--- 122
Query: 129 ALSKQALVDQLGLESITDREVCCYM-ISCKDSINID 163
L+ + +VD + D ++ S K++ N++
Sbjct: 123 -LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVE 157
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 76/156 (48%), Gaps = 10/156 (6%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQR 68
+L LIG GK+ L+ A Y+E I T+G F +R + TIKL WD GQ
Sbjct: 7 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128
RFRT+ Y RG I+ V D D++S + L E+ S + L++GNK D
Sbjct: 67 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCD--- 122
Query: 129 ALSKQALVDQLGLESITDREVCCYM-ISCKDSINID 163
L+ + +VD + D ++ S K++ N++
Sbjct: 123 -LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVE 157
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 76/155 (49%), Gaps = 10/155 (6%)
Query: 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRR 69
+L LIG GK+ L+ A Y+E I T+G F +R + TIKL WD GQ R
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 70 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129
FRT+ Y RG I+ V D D++S + L E+ S + L++GNK D
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCD---- 115
Query: 130 LSKQALVDQLGLESITDREVCCYM-ISCKDSINID 163
L+ + +VD + D ++ S K++ N++
Sbjct: 116 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVE 150
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 76/156 (48%), Gaps = 10/156 (6%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQR 68
+L LIG GK+ L+ A Y+E I T+G F +R + TIKL WD GQ
Sbjct: 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128
RFRT+ Y RG I+ V D D++S + L E+ S + L++GNK D
Sbjct: 94 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCD--- 149
Query: 129 ALSKQALVDQLGLESITDREVCCYM-ISCKDSINID 163
L+ + +VD + D ++ S K++ N++
Sbjct: 150 -LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVE 184
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 76/156 (48%), Gaps = 10/156 (6%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQR 68
+L LIG GK+ L+ A Y+E I T+G F +R + TIKL WD GQ
Sbjct: 26 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 85
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128
RFRT+ Y RG I+ V D D++S + L E+ S + L++GNK D
Sbjct: 86 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCD--- 141
Query: 129 ALSKQALVDQLGLESITDREVCCYM-ISCKDSINID 163
L+ + +VD + D ++ S K++ N++
Sbjct: 142 -LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVE 176
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 75/156 (48%), Gaps = 10/156 (6%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQR 68
+L LIG GK L+ A Y+E I T+G F +R + TIKL WD GQ
Sbjct: 17 FKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128
RFRT+ Y RG I+ V D D++S + L E+ S + L++GNK D
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCD--- 132
Query: 129 ALSKQALVDQLGLESITDREVCCYM-ISCKDSINID 163
L+ + +VD + D ++ S K++ N++
Sbjct: 133 -LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVE 167
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 76/156 (48%), Gaps = 10/156 (6%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQR 68
+L LIG GK+ L+ A Y+E I T+G F +R + TIKL WD GQ
Sbjct: 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128
RFRT+ Y RG I+ V D D++S + L E+ S + L++GNK D
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCD--- 132
Query: 129 ALSKQALVDQLGLESITDREVCCYM-ISCKDSINID 163
L+ + +VD + D ++ S K++ N++
Sbjct: 133 -LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVE 167
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 7/155 (4%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMR--KVTKGNVTIKLWDLGGQR 68
+L L+G + GKT +V TG +SE T+G F M+ ++ V +++WD GQ
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128
RFRT+ + Y R + + D R S ++ E + K + S I L++GNK D SE
Sbjct: 90 RFRTITQSYYRSANGAILAYDITKRSSF-LSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE 148
Query: 129 ALSKQALVDQLGLESITDREVCCYMISCKDSINID 163
L + +L + L D +C S KDS N++
Sbjct: 149 -LREVSLAEAQSLAEHYDI-LCAIETSAKDSSNVE 181
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Query: 15 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRF 70
L LIG GK+ L+ A Y+E I T+G F +R + TIKL WD GQ RF
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 71 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
RT+ Y RG I+ V D D++S + L E+ S + L++GNK D
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCD 114
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 75/156 (48%), Gaps = 10/156 (6%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQR 68
+L LIG GK+ L+ A Y+E I T+G F +R + TIKL WD GQ
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128
RFRT+ Y RG I+ V D D++S + L E+ S + L++G K D
Sbjct: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGIKCD--- 124
Query: 129 ALSKQALVDQLGLESITDREVCCYM-ISCKDSINID 163
L+ + +VD + D ++ S K++ N++
Sbjct: 125 -LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVE 159
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 78/161 (48%), Gaps = 11/161 (6%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQR 68
++L L+G GK+S+V + ++E+ PT+G F ++VT T+K +WD GQ
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIAR---SELHELLMKPSLSGIPLLVLGNKID 125
RF ++ Y R A L V D S AR ELHE K I + ++GNKID
Sbjct: 64 RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKD----IIIALVGNKID 119
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166
+ ++ + + G + ++ + + S K N++ V
Sbjct: 120 XLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 160
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 18/167 (10%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQR 68
+L LIG + GKTS + A ++ + TVG F ++ V + + IKL WD GQ
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128
R+RT+ Y RG L + D A+++S A + + S ++++GNK D +
Sbjct: 83 RYRTITTAYYRGAMGFLLMYDIANQESFA-AVQDWATQIKTYSWDNAQVILVGNKCDLED 141
Query: 129 -----ALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLI 170
A + L D LG E + S K++IN+ V + L+
Sbjct: 142 ERVVPAEDGRRLADDLGFE--------FFEASAKENINVKQVFERLV 180
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 60/117 (51%), Gaps = 5/117 (4%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQR 68
+L LIG GK+ L+ + Y+ D I T+G F ++ V T+KL WD GQ
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
RFRT+ Y RG I+ V D D++S + L E+ + + + LLV GNK D
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLV-GNKCD 124
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 60/117 (51%), Gaps = 5/117 (4%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQR 68
+L LIG GK+ L+ + Y+ D I T+G F ++ V T+KL WD GQ
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
RFRT+ Y RG I+ V D D++S + L E+ + + + LLV GNK D
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLV-GNKCD 124
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 60/117 (51%), Gaps = 5/117 (4%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQR 68
+L LIG GK+ L+ + Y+ D I T+G F ++ V T+KL WD GQ
Sbjct: 22 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 81
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
RFRT+ Y RG I+ V D D++S + L E+ + + + LLV GNK D
Sbjct: 82 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLV-GNKCD 137
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 10/160 (6%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQ 67
+ +L L+G GK+SLV G + E T+G F + V + T+K +WD GQ
Sbjct: 6 QFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127
R+ ++ Y RG A + V D + +S A++ + EL + S I + + GNK D
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKAD-- 122
Query: 128 EALSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAVI 166
L+ + VD +S D +M S K S+N++ +
Sbjct: 123 --LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 10/160 (6%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQ 67
+ +L L+G GK+SLV G + E T+G F + V + T+K +WD GQ
Sbjct: 6 QFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127
R+ ++ Y RG A + V D + +S A++ + EL + S I + + GNK D
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKAD-- 122
Query: 128 EALSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAVI 166
L+ + VD +S D +M S K S+N++ +
Sbjct: 123 --LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 10/160 (6%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQ 67
+ +L L+G GK+SLV G + E T+G F + V + T+K +WD GQ
Sbjct: 6 QFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127
R+ ++ Y RG A + V D + +S A++ + EL + S I + + GNK D
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKAD-- 122
Query: 128 EALSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAVI 166
L+ + VD +S D +M S K S+N++ +
Sbjct: 123 --LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 10/160 (6%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQ 67
+ +L L+G GK+SLV G + E T+G F + V + T+K +WD GQ
Sbjct: 7 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 66
Query: 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127
R+ ++ Y RG A + V D + +S A++ + EL + S I + + GNK D
Sbjct: 67 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKAD-- 123
Query: 128 EALSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAVI 166
L+ + VD +S D +M S K S+N++ +
Sbjct: 124 --LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 161
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 10/160 (6%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQ 67
+ +L L+G GK+SLV G + E T+G F + V + T+K +WD GQ
Sbjct: 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127
R+ ++ Y RG A + V D + +S A++ + EL + S I + + GNK D
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKAD-- 122
Query: 128 EALSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAVI 166
L+ + VD +S D +M S K S+N++ +
Sbjct: 123 --LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 10/160 (6%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQ 67
+ +L L+G GK+SLV G + E T+G F + V + T+K +WD GQ
Sbjct: 6 QFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127
R+ ++ Y RG A + V D + +S A++ + EL + S I + + GNK D
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKAD-- 122
Query: 128 EALSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAVI 166
L+ + VD +S D +M S K S+N++ +
Sbjct: 123 --LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 10/160 (6%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQ 67
+ +L L+G GK+SLV G + E T+G F + V + T+K +WD GQ
Sbjct: 6 QFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127
R+ ++ Y RG A + V D + +S A++ + EL + S I + + GNK D
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKAD-- 122
Query: 128 EALSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAVI 166
L+ + VD +S D +M S K S+N++ +
Sbjct: 123 --LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQR 68
++ +IG N GKT L G + + T+G + R+ + + I+LWD GQ
Sbjct: 30 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 89
Query: 69 RFR-TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127
RFR +M + Y R V A+++V D + S + + E + IP +++GNK D
Sbjct: 90 RFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 149
Query: 128 EAL 130
A+
Sbjct: 150 SAI 152
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 18/171 (10%)
Query: 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 64
F ++ +IG + GKTS + A ++ + TVG F ++ + + + IKL WD
Sbjct: 2 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61
Query: 65 GGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 124
GQ R+RT+ Y RG + + D + +S A + + S +L++GNK
Sbjct: 62 AGQERYRTITTAYYRGAMGFILMYDITNEESFN-AVQDWSTQIKTYSWDNAQVLLVGNKC 120
Query: 125 DKSE-----ALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLI 170
D + + + L D LG E + S KD+IN+ + L+
Sbjct: 121 DMEDERVVSSERGRQLADHLGFE--------FFEASAKDNINVKQTFERLV 163
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 76/159 (47%), Gaps = 8/159 (5%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQ 67
+ +L L+G GK+SLV G + E T+G F + V + T+K +WD GQ
Sbjct: 3 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 62
Query: 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127
R+ ++ Y RG A + V D + D+ A++ + EL + S I + + GNK D +
Sbjct: 63 ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQAS-PNIVIALAGNKADLA 121
Query: 128 EALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166
SK+A+ Q D + S K ++N++ +
Sbjct: 122 ---SKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIF 157
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 75/164 (45%), Gaps = 19/164 (11%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQR 68
+L +IG GK+SL+ A +S I T+G + + ++ V +++WD GQ
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS- 127
RFRT+ Y RG ++ V D +S + LHE+ + + +++GNK D
Sbjct: 70 RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI--NQNCDDVCRILVGNKNDDPE 127
Query: 128 ----EALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 167
E Q+G++ + S K+++N++ + +
Sbjct: 128 RKVVETEDAYKFAGQMGIQ--------LFETSAKENVNVEEMFN 163
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 17/176 (9%)
Query: 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGY-SEDMIPTVGFNMRK----VTKGNVTIKLW 62
F+ ++ L+G GKT L+ G + + I TVG + R V V +++W
Sbjct: 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMW 65
Query: 63 DLGGQRRFRTMWERYCRGVSAILYVVDAADR---DSVPIARSELHELLMKPSLSGIPLLV 119
D GQ RFR++ Y R A+L + D ++ D++ +E+HE + L++
Sbjct: 66 DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHD----VALML 121
Query: 120 LGNKIDKSEALSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAVIDWLIKHSK 174
LGNK+D + + +V + E + +M S K +N+D + K K
Sbjct: 122 LGNKVDSAH----ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK 173
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 79/157 (50%), Gaps = 10/157 (6%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQ 67
+ +L L+G GK+SLV G + E T+G F + V + T+K +WD GQ
Sbjct: 8 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQ 67
Query: 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127
R+ ++ Y RG A + V D ++++ A++ + EL + S S I + + GNK D
Sbjct: 68 ERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPS-IVIALAGNKAD-- 124
Query: 128 EALSKQALVDQLGLESITDREVCCYM-ISCKDSINID 163
L+ + +V+ ++ D +M S K ++N++
Sbjct: 125 --LANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVN 159
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQR 68
++ +IG N GKT L G + + T+G + R+ + + I+LWD GQ
Sbjct: 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80
Query: 69 RFR-TMWERYCRGVSAILYVVD---AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 124
RFR +M + Y R V A+++V D A S+P E + L+ + IP +++GNK
Sbjct: 81 RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLA---NDIPRILVGNKC 137
Query: 125 DKSEAL 130
D A+
Sbjct: 138 DLRSAI 143
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 10/165 (6%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQ 67
+ +L L+G GK+SLV G + E T+G F + V + T+K +WD GQ
Sbjct: 7 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 66
Query: 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127
R+ ++ Y RG A + V D + +S A++ + EL + S I + + GNK D
Sbjct: 67 ERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKAD-- 123
Query: 128 EALSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAVIDWLIK 171
L+ + VD +S D + S K S N++ + + K
Sbjct: 124 --LANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAK 166
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 79/168 (47%), Gaps = 10/168 (5%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGN--VTIKLWDLGGQR 68
+++ ++G GKTSL+N +S T+G F ++V + VT+++WD GQ
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPS---LSGIPLLVLGNKID 125
RF+++ + RG + V D ++ S E L++ S P +VLGNKID
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 173
++Q + + + + S K++IN++ + +++
Sbjct: 129 LE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 173
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 79/168 (47%), Gaps = 10/168 (5%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGN--VTIKLWDLGGQR 68
+++ ++G GKTSL+N +S T+G F ++V + VT+++WD GQ
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPS---LSGIPLLVLGNKID 125
RF+++ + RG + V D ++ S E L++ S P +VLGNKID
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 173
++Q + + + + S K++IN++ + +++
Sbjct: 129 FE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 173
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 79/168 (47%), Gaps = 10/168 (5%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGN--VTIKLWDLGGQR 68
+++ ++G GKTSL+N +S T+G F ++V + VT+++WD GQ
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPS---LSGIPLLVLGNKID 125
RF+++ + RG + V D ++ S E L++ S P +VLGNKID
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 173
++Q + + + + S K++IN++ + +++
Sbjct: 129 LE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 173
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 12/164 (7%)
Query: 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL 61
H+ FK L LIG GKT ++ + ++ I T+G F +R + IKL
Sbjct: 2 HMDYLFK----LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKL 57
Query: 62 --WDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLV 119
WD GQ RFRT+ Y RG I+ V D + S R+ + + S + + ++
Sbjct: 58 QIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS-ADVEKMI 116
Query: 120 LGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINID 163
LGNK D ++ K+ + + G + D + S K +IN++
Sbjct: 117 LGNKCDVND---KRQVSKERGEKLALDYGIKFMETSAKANINVE 157
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 70/163 (42%), Gaps = 10/163 (6%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQRRFRT 72
L+G GK+SL+N T + + T+G +V VT+++WD GQ RFR+
Sbjct: 14 LLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRS 73
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSL---SGIPLLVLGNKIDKSEA 129
+ + RG L D S + E + + P ++LGNKID SE
Sbjct: 74 LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE- 132
Query: 130 LSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 172
+Q ++ + + + S KD+ N+ A + ++
Sbjct: 133 --RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRR 173
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 70/163 (42%), Gaps = 10/163 (6%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQRRFRT 72
L+G GK+SL+N T + + T+G +V VT+++WD GQ RFR+
Sbjct: 12 LLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRS 71
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSL---SGIPLLVLGNKIDKSEA 129
+ + RG L D S + E + + P ++LGNKID SE
Sbjct: 72 LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE- 130
Query: 130 LSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 172
+Q ++ + + + S KD+ N+ A + ++
Sbjct: 131 --RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRR 171
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT---KGN-VTIKLWDLGGQR 68
+++ +IG GK+SL+ + ++ T+G + + T GN + +WD GQ
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 126
RFRT+ Y RG ++ V D RD+ + L+EL + + I ++GNKIDK
Sbjct: 76 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKIDK 133
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 10/160 (6%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQ 67
+ +L L+G GK+SLV G + E T+G F + V + T+K +WD G
Sbjct: 5 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGL 64
Query: 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127
R+ ++ Y RG A + V D + +S A++ + EL + S I + + GNK D
Sbjct: 65 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKAD-- 121
Query: 128 EALSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAVI 166
L+ + VD +S D +M S K S+N++ +
Sbjct: 122 --LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 159
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 8/159 (5%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTV--GFNMRKVTKGNVTIK--LWDLGGQ 67
+ +L L+G GK+SLV G + E T+ F + V + T+K +WD GQ
Sbjct: 5 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQ 64
Query: 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127
R+ ++ Y RG A + V D + D+ A++ + EL + S I + + GNK D +
Sbjct: 65 ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQAS-PNIVIALAGNKADLA 123
Query: 128 EALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166
SK+A+ Q D + S K ++N++ +
Sbjct: 124 ---SKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIF 159
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 18/171 (10%)
Query: 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 64
F ++ +IG + GKTS + A ++ + TVG F ++ + + + IKL WD
Sbjct: 5 FDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 64
Query: 65 GGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 124
G R+RT+ Y RG + D + +S A + + S +L++GNK
Sbjct: 65 AGLERYRTITTAYYRGAXGFILXYDITNEESFN-AVQDWSTQIKTYSWDNAQVLLVGNKC 123
Query: 125 DKSE-----ALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLI 170
D + + + L D LG E + S KD+IN+ + L+
Sbjct: 124 DXEDERVVSSERGRQLADHLGFE--------FFEASAKDNINVKQTFERLV 166
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 8/155 (5%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQR 68
+L LIG GKT ++ + ++ I T+G F +R + IKL WD GQ
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128
RFRT+ Y RG I+ V D + S R+ + + S + + ++LGNK D ++
Sbjct: 69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS-ADVEKMILGNKCDVND 127
Query: 129 ALSKQALVDQLGLESITDREVCCYMISCKDSINID 163
K+ + + G + D + S K +IN++
Sbjct: 128 ---KRQVSKERGEKLALDYGIKFMETSAKANINVE 159
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 71/167 (42%), Gaps = 10/167 (5%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQR 68
+++ L+G GK+SL+N T + T+G +V VT+++WD GQ
Sbjct: 8 LKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQE 67
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSG---IPLLVLGNKID 125
RF+++ + RG L DR S + E + + P +VLGNK+D
Sbjct: 68 RFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVD 127
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 172
K + +Q ++ + + + S KD N+ + ++
Sbjct: 128 KED---RQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQ 171
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 68/163 (41%), Gaps = 10/163 (6%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQRRFRT 72
L+G GK+SL+N T + + T+G +V VT+++WD GQ RFR+
Sbjct: 16 LLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRS 75
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSL---SGIPLLVLGNKIDKSEA 129
+ + RG L D S + E + + P ++LGNK D E
Sbjct: 76 LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDIKE- 134
Query: 130 LSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 172
+Q ++ + + + S KDS N+ A + ++
Sbjct: 135 --RQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRR 175
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 8/159 (5%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQ 67
+ +L L+G GK+SLV G + E T+G F + V + T+K +WD G
Sbjct: 5 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGL 64
Query: 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127
R+ ++ Y RG A + V D + D+ A++ + EL + S I + + GNK D +
Sbjct: 65 ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQAS-PNIVIALAGNKADLA 123
Query: 128 EALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166
SK+A+ Q D + S K ++N++ +
Sbjct: 124 ---SKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIF 159
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQRRFRT 72
LIG GKT+L++ +S D T+G F+ R V G +K +WD G R+R
Sbjct: 15 LIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRA 74
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129
+ Y RG L V D + + L EL + + +LV GNK D S+A
Sbjct: 75 ITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLV-GNKSDLSQA 130
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 10/159 (6%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQR 68
++ LIG GKT LV G + T+G + ++ V +++WD GQ
Sbjct: 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128
RFR++ + Y R +A++ D +S L E+ S I +LV GNKID
Sbjct: 87 RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLV-GNKID--- 142
Query: 129 ALSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAVI 166
L+++ V Q E ++ + Y+ S K+S N++ +
Sbjct: 143 -LAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLF 180
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 77/166 (46%), Gaps = 12/166 (7%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQR 68
+++ ++G GK+S++ G +++D T+G + +V +V + LWD GQ
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128
F + + Y RG A + V DR+S S +++ + IP ++ NKID
Sbjct: 66 EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVV--AEVGDIPTALVQNKID--- 120
Query: 129 ALSKQALVDQLGLESITDR-EVCCYMISCKDSINIDAVIDWLI-KH 172
L + + E + R ++ Y S K+ +N+ V +L KH
Sbjct: 121 -LLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 165
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 78/168 (46%), Gaps = 10/168 (5%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGN--VTIKLWDLGGQR 68
+++ ++G GKTSL+N +S T+G F ++V + VT+++WD G
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLE 68
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPS---LSGIPLLVLGNKID 125
RF+++ + RG + V D ++ S E L++ S P +VLGNKID
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 173
++Q + + + + S K++IN++ + +++
Sbjct: 129 LE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 173
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 18/177 (10%)
Query: 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVT 58
L+ F +L +IG + GKTS + A ++ + TVG + + T + V
Sbjct: 14 LYFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVK 73
Query: 59 IKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLL 118
+++WD GQ R+RT+ Y RG + + D + +S A + + S ++
Sbjct: 74 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFN-AVQDWATQIKTYSWDNAQVI 132
Query: 119 VLGNKIDKSE-----ALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLI 170
++GNK D E Q L +QLG + + S K++I++ + L+
Sbjct: 133 LVGNKCDMEEERVVPTEKGQLLAEQLGFD--------FFEASAKENISVRQAFERLV 181
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 5/122 (4%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGG 66
+E+++ L+G GK+S+V + ++ PT+G F + V GN K +WD G
Sbjct: 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAG 81
Query: 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 126
Q RF ++ Y RG +A + V D +DS + + E L + I + + GNK D
Sbjct: 82 QERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKE-LKEHGPENIVMAIAGNKCDL 140
Query: 127 SE 128
S+
Sbjct: 141 SD 142
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 5/117 (4%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQRRFRT 72
LIG GKT+L++ +S D T+G F+ R V G +K +WD G R+R
Sbjct: 30 LIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRA 89
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129
+ Y RG L V D + + L EL + I ++++GNK D S+A
Sbjct: 90 ITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEAT-IVVMLVGNKSDLSQA 145
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 5/118 (4%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQ 67
+ +L +G Q GKTS++ + + T+G + T +G V ++LWD GQ
Sbjct: 1 KYKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQ 60
Query: 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
RFR++ Y R +A + V D +R S + ++L + I LV GNK D
Sbjct: 61 ERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALV-GNKTD 117
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 9/140 (6%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQR 68
M++ LIG GK+ L+ ++ I T+G + + + V ++LWD GQ
Sbjct: 8 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 67
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS- 127
RFRT+ Y RG I+ V D D + + + + + + + LL++GNK D
Sbjct: 68 RFRTITTAYYRGAMGIILVYDVTDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDMET 126
Query: 128 ---EALSKQALVDQLGLESI 144
A +AL +LG+ I
Sbjct: 127 RVVTADQGEALAKELGIPFI 146
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 14/134 (10%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQR 68
M++ LIG GK+ L+ ++ I T+G + + + V ++LWD GQ
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNK----- 123
RFRT+ Y RG I+ V D D + + + + + + + LL++GNK
Sbjct: 81 RFRTITTAYYRGAMGIILVYDVTDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDMET 139
Query: 124 ----IDKSEALSKQ 133
D+ EAL+K+
Sbjct: 140 RVVTADQGEALAKE 153
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 9/136 (6%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQRRFRT 72
LIG GK+ L+ ++ I T+G + + + V ++LWD GQ RFRT
Sbjct: 8 LIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRT 67
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS----E 128
+ Y RG I+ V D D + + + + + + + LL++GNK D
Sbjct: 68 ITTAYYRGAXGIILVYDVTDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDXETRVVT 126
Query: 129 ALSKQALVDQLGLESI 144
A +AL +LG+ I
Sbjct: 127 ADQGEALAKELGIPFI 142
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 74/168 (44%), Gaps = 19/168 (11%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQ 67
+ +L L+G GKT+ V TG + + +PT+G + + +G + +WD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 68 RRFRTMWERYCRGVSAILYVVDAADR---DSVPIARSELHELLMKPSLSGIPLLVLGNKI 124
+F + + Y + + D R +VP H L++ IP+++ GNK+
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP----NWHRDLVR-VCENIPIVLCGNKV 124
Query: 125 D-KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
D K + +++V + + Y IS K + N + WL +
Sbjct: 125 DIKDRKVKAKSIVFH------RKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 9/140 (6%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQR 68
M++ LIG GK+ L+ ++ I T+G + + + V +++WD GQ
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS- 127
RFRT+ Y RG I+ V D D + + + + + + + LL++GNK D
Sbjct: 64 RFRTITTAYYRGAMGIILVYDITDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDMET 122
Query: 128 ---EALSKQALVDQLGLESI 144
A +AL +LG+ I
Sbjct: 123 RVVTADQGEALAKELGIPFI 142
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 19/165 (11%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQ 67
++++ +IG + GKTSL+ + E TVG + + ++ + +++WD GQ
Sbjct: 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQ 85
Query: 68 RRFRTMWERYCRGVSAILYVVDAADR---DSVPIARSELHELLMKPSLSGIPLLVLGNKI 124
RF ++ Y R I+ V D + D +P + +++ K + LL++GNK+
Sbjct: 86 ERFNSITSAYYRSAKGIILVYDITKKETFDDLP----KWMKMIDKYASEDAELLLVGNKL 141
Query: 125 DKSEALSKQALVDQLG---LESITDREVCCYMISCKDSINIDAVI 166
D + + + Q G + IT C S KD+ N+D +
Sbjct: 142 D---CETDREITRQQGEKFAQQITGMRFC--EASAKDNFNVDEIF 181
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 74/168 (44%), Gaps = 19/168 (11%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQ 67
+ +L L+G GKT+ V TG + + +PT+G + + +G + +WD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 68 RRFRTMWERYCRGVSAILYVVDAADR---DSVPIARSELHELLMKPSLSGIPLLVLGNKI 124
+F + + Y + + D R +VP H L++ IP+++ GNK+
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP----NWHRDLVR-VCENIPIVLCGNKV 124
Query: 125 D-KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
D K + +++V + + Y IS K + N + WL +
Sbjct: 125 DIKDRKVKAKSIVFH------RKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 9/136 (6%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQRRFRT 72
LIG GK+ L+ ++ I T+G + + + V +++WD GQ RFRT
Sbjct: 8 LIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRT 67
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS----E 128
+ Y RG I+ V D D + + + + + + + LL++GNK D
Sbjct: 68 ITTAYYRGAXGIILVYDITDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDXETRVVT 126
Query: 129 ALSKQALVDQLGLESI 144
A +AL +LG+ I
Sbjct: 127 ADQGEALAKELGIPFI 142
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 5/117 (4%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGN--VTIKLWDLGGQR 68
++ L+G GKTSLV +++ I T+G F +K+ G V + +WD GQ
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
RF + Y R + + V D D DS ++ + E L K + I L ++GNKID
Sbjct: 67 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKE-LRKMLGNEICLCIVGNKID 122
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 5/119 (4%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGG 66
+E+++ L+G GK+S+V + ++ PT+G F + V N K +WD G
Sbjct: 4 RELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 63
Query: 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
Q RFR + Y RG +A + V D ++ ++ + EL S I + + GNK D
Sbjct: 64 QERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS-IVVAIAGNKCD 121
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 72
+IG GK+ L++ + +D T+G F R V G T+KL WD GQ RFR+
Sbjct: 30 VIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRS 89
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHE--LLMKPSLSGIPLLVLGNKID 125
+ Y RG + L V D R++ + L + L P+ I +++ GNK D
Sbjct: 90 VTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPN---IVVILCGNKKD 141
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 5/126 (3%)
Query: 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL 61
H+S + + +IG GK+ L++ + +D T+G F + + G +KL
Sbjct: 2 HMSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKL 61
Query: 62 --WDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLV 119
WD GQ RFR++ Y RG + L V D R++ + L + M S I +++
Sbjct: 62 QIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS-QNIVIIL 120
Query: 120 LGNKID 125
GNK D
Sbjct: 121 CGNKKD 126
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 73/168 (43%), Gaps = 19/168 (11%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQ 67
+ +L L+G GKT+ V TG + + + T+G + + +G + +WD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 68 RRFRTMWERYCRGVSAILYVVDAADR---DSVPIARSELHELLMKPSLSGIPLLVLGNKI 124
+F + + Y + + D R +VP H L++ IP+++ GNK+
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP----NWHRDLVR-VCENIPIVLCGNKV 124
Query: 125 D-KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
D K + +++V + + Y IS K + N + WL +
Sbjct: 125 DIKDRKVKAKSIVFH------RKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 72
+IG GK+ L++ + +D T+G F + + G +KL WD GQ RFR+
Sbjct: 16 VIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRS 75
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ Y RG + L V D R++ + L + M S I +++ GNK D
Sbjct: 76 VTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKD 127
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTV--GFNMRKVTKGN--VTIKLWDLGGQRRFRT 72
L+G GKTSLV +++ I T+ F +K+ G V + +WD GQ RF
Sbjct: 11 LLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHA 70
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ Y R + + V D D DS ++ + E L K + I L ++GNKID
Sbjct: 71 LGPIYYRDSNGAILVYDITDEDSFQKVKNWVKE-LRKMLGNEICLCIVGNKID 122
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 73/168 (43%), Gaps = 19/168 (11%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQ 67
+ +L L+G GKT+ V TG + + + T+G + + +G + +WD GQ
Sbjct: 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 62
Query: 68 RRFRTMWERYCRGVSAILYVVDAADR---DSVPIARSELHELLMKPSLSGIPLLVLGNKI 124
+F + + Y + + D R +VP H L++ IP+++ GNK+
Sbjct: 63 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP----NWHRDLVR-VCENIPIVLCGNKV 117
Query: 125 D-KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
D K + +++V + + Y IS K + N + WL +
Sbjct: 118 DIKDRKVKAKSIVFH------RKKNLQYYDISAKSNYNFEKPFLWLAR 159
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 9/123 (7%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVT---KGNVTIKLWDLG 65
+++++ ++G +GKTSL A + + T+G F +R++T NVT+++WD+G
Sbjct: 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIG 64
Query: 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSG--IPLLVL-GN 122
GQ M ++Y G +L V D + S + + ++ K S PL+ L GN
Sbjct: 65 GQTIGGKMLDKYIYGAQGVLLVYDITNYQSFE-NLEDWYTVVKKVSEESETQPLVALVGN 123
Query: 123 KID 125
KID
Sbjct: 124 KID 126
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 11/119 (9%)
Query: 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQRR 69
+L L+G AGK+SLV + E T+G F + + + T+K +WD GQ R
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 70 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVL---GNKID 125
+ ++ Y RG +A + V D ++ S A+ + EL + G P +V+ GNK D
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQ----GNPNMVMALAGNKSD 128
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 5/120 (4%)
Query: 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRK-VTKGNVTI-KLWDLG 65
++ ++ L G GK+S + + + E++ T+G F M+ + G T+ +LWD
Sbjct: 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTA 85
Query: 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
GQ RFR++ + Y R +L + D S R E +++ + +P++++GNK D
Sbjct: 86 GQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIR-EWVDMIEDAAHETVPIMLVGNKAD 144
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 73/168 (43%), Gaps = 19/168 (11%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQ 67
+ +L L+G GKT+ V TG + + + T+G + + +G + +WD GQ
Sbjct: 15 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74
Query: 68 RRFRTMWERYCRGVSAILYVVDAADR---DSVPIARSELHELLMKPSLSGIPLLVLGNKI 124
+F + + Y + + D R +VP H L++ IP+++ GNK+
Sbjct: 75 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP----NWHRDLVR-VCENIPIVLCGNKV 129
Query: 125 D-KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
D K + +++V + + Y IS K + N + WL +
Sbjct: 130 DIKDRKVKAKSIVFH------RKKNLQYYDISAKSNYNFEKPFLWLAR 171
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 73/168 (43%), Gaps = 19/168 (11%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQ 67
+ +L L+G GKT+ V TG + + + T+G + + +G + +WD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 68 RRFRTMWERYCRGVSAILYVVDAADR---DSVPIARSELHELLMKPSLSGIPLLVLGNKI 124
+F + + Y + + D R +VP H L++ IP+++ GNK+
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP----NWHRDLVR-VCENIPIVLCGNKV 124
Query: 125 D-KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
D K + +++V + + Y IS K + N + WL +
Sbjct: 125 DIKDRKVKAKSIVFH------RKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTV--GFNMRKVTKGN--VTIKLWDLGGQRRFRT 72
L+G GKTSLV +++ I T+ F +K+ G V + +WD GQ RF
Sbjct: 25 LLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHA 84
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ Y R + + V D D DS ++ + E L K + I L ++GNKID
Sbjct: 85 LGPIYYRDSNGAILVYDITDEDSFQKVKNWVKE-LRKMLGNEICLCIVGNKID 136
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 17/167 (10%)
Query: 18 IGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGN-----------VTIKLWD 63
+G GKTS++ G ++ I TVG + R+ V + N + ++LWD
Sbjct: 17 LGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWD 76
Query: 64 LGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNK 123
G RFR++ + R L + D + S R+ + +L M +++ GNK
Sbjct: 77 TAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNK 136
Query: 124 IDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLI 170
D + ++A+ ++ E + + S + NI I+ L+
Sbjct: 137 SDLED---QRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLL 180
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 73/168 (43%), Gaps = 19/168 (11%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQ 67
+ +L L+G GKT+ V TG + + + T+G + + +G + +WD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 68 RRFRTMWERYCRGVSAILYVVDAADR---DSVPIARSELHELLMKPSLSGIPLLVLGNKI 124
+F + + Y + + D R +VP H L++ IP+++ GNK+
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP----NWHRDLVR-VCENIPIVLCGNKV 124
Query: 125 D-KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
D K + +++V + + Y IS K + N + WL +
Sbjct: 125 DIKDRKVKAKSIVFH------RKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 73/168 (43%), Gaps = 19/168 (11%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQ 67
+ +L L+G GKT+ V TG + + + T+G + + +G + +WD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 68 RRFRTMWERYCRGVSAILYVVDAADR---DSVPIARSELHELLMKPSLSGIPLLVLGNKI 124
+F + + Y + + D R +VP H L++ IP+++ GNK+
Sbjct: 70 EKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVP----NWHRDLVR-VCENIPIVLCGNKV 124
Query: 125 D-KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
D K + +++V + + Y IS K + N + WL +
Sbjct: 125 DIKDRKVKAKSIVFH------RKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 19/168 (11%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQ 67
+ +L L+G GKT+ V TG + + + T+G + + +G + +WD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 68 RRFRTMWERYCRGVSAILYVVDAADR---DSVPIARSELHELLMKPSLSGIPLLVLGNKI 124
+F + + Y + D R +VP H L++ IP+++ GNK+
Sbjct: 70 EKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVP----NWHRDLVR-VCENIPIVLCGNKV 124
Query: 125 D-KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
D K + +++V + + Y IS K + N + WL +
Sbjct: 125 DIKDRKVKAKSIVFH------RKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGG 66
++ +L +G Q+ GKTSL+ + T+G + T + ++LWD G
Sbjct: 5 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 64
Query: 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
Q RFR++ Y R +A + V D + +S + ++ + S + ++++GNK D
Sbjct: 65 QERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTD 122
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 69/156 (44%), Gaps = 8/156 (5%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGG 66
++ +L +G Q+ GKTSL+ + T+G + T V ++LWD G
Sbjct: 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 72
Query: 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 126
Q RFR++ Y R + + V D + +S + ++ + S + ++++GNK D
Sbjct: 73 QERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERG-SDVIIMLVGNKTDL 131
Query: 127 SEALSKQALVDQLGLESITDREVCCYMISCKDSINI 162
S+ K+ + + G + V S K N+
Sbjct: 132 SD---KRQVSTEEGERKAKELNVMFIETSAKAGYNV 164
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVT-KGNVTIK--LWDLGGQ 67
++ LIG GK++L++ ++ + T+G F + + K N IK +WD GQ
Sbjct: 8 FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQ 67
Query: 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
R+R + Y RG L V D ++S L EL S I +L++GNK D
Sbjct: 68 ERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNAD-SNIVILLVGNKSD 124
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 72/171 (42%), Gaps = 24/171 (14%)
Query: 18 IGLQNAGKTSLVNTIATGGYSEDMIPTV--GFNMRKVTKGN-VTIKLWDLGGQRRFRTMW 74
+G GKT ++ + + + D +PTV F+ V GN V + LWD GQ + +
Sbjct: 12 VGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLR 71
Query: 75 ERYCRGVSAILYVVDAADRDSVP-IARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ 133
RG + + S +A+ + EL + G+P++++G K+D + KQ
Sbjct: 72 PLSYRGADVFILAFSLISKASYENVAKKWIPEL--RHYAPGVPIILVGTKLDLRD--DKQ 127
Query: 134 ALVDQLGLESITDRE-------------VCCYMISCKDSINIDAVIDWLIK 171
+D G IT + + C S K N+ AV D IK
Sbjct: 128 FFIDHPGAVPITTNQGEELKKLIGSPIYIEC---SSKTQQNVKAVFDAAIK 175
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 69/155 (44%), Gaps = 8/155 (5%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQ 67
+ +L +G Q+ GKTSL+ + T+G + T V ++LWD GQ
Sbjct: 2 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 61
Query: 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127
RFR++ Y R + + V D + +S + ++ + S + ++++GNK D +
Sbjct: 62 ERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERG-SDVIIMLVGNKTDLA 120
Query: 128 EALSKQALVDQLGLESITDREVCCYMISCKDSINI 162
+ K+ + + G + + V S K N+
Sbjct: 121 D---KRQITIEEGEQRAKELSVMFIETSAKTGYNV 152
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQ 67
+ +L +G Q+ GKTSL+ + T+G + T V ++LWD GQ
Sbjct: 1 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 60
Query: 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
RFR++ Y R + + V D + +S + ++ + S + ++++GNK D
Sbjct: 61 ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTD 117
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 73/168 (43%), Gaps = 19/168 (11%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQ 67
+ +L L+G GKT+ V TG + + + T+G + + +G + +WD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 68 RRFRTMWERYCRGVSAILYVVDAADR---DSVPIARSELHELLMKPSLSGIPLLVLGNKI 124
++ + + Y + + D R +VP H L++ IP+++ GNK+
Sbjct: 70 EKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP----NWHRDLVR-VCENIPIVLCGNKV 124
Query: 125 D-KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
D K + +++V + + Y IS K + N + WL +
Sbjct: 125 DIKDRKVKAKSIVFH------RKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 70/168 (41%), Gaps = 18/168 (10%)
Query: 18 IGLQNAGKTSLVNTIATGGYSEDMIPTV--GFNMRKVTKGN-VTIKLWDLGGQRRFRTMW 74
+G GKT ++ + + D +PTV F+ V G+ V + LWD GQ + +
Sbjct: 12 VGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR 71
Query: 75 ERYCRGVSAILYVVDAADRDSVP-IARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ 133
RG L + S I + L EL K GIP++++G K+D + KQ
Sbjct: 72 PLSYRGADVFLLAFSLISKASYENIHKKWLPEL--KHYAPGIPIVLVGTKLDLRD--DKQ 127
Query: 134 ALVDQLGLESITDRE----------VCCYMISCKDSINIDAVIDWLIK 171
L D G SIT + V S K N+ AV D I+
Sbjct: 128 FLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAIR 175
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGG 66
+E+++ L+G GK+S++ + ++ PT+G F + V N K +WD G
Sbjct: 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 64
Query: 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
RFR + Y RG +A + V D ++ ++ + EL S I + + GNK D
Sbjct: 65 LERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS-IVVAIAGNKCD 122
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 19/168 (11%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQ 67
+ +L L+G GKT+ V TG + + T+G + + +G + +WD GQ
Sbjct: 15 QFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74
Query: 68 RRFRTMWERYCRGVSAILYVVDAADR---DSVPIARSELHELLMKPSLSGIPLLVLGNKI 124
+F + + Y + + D R +VP H L++ IP+++ GNK+
Sbjct: 75 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP----NWHRDLVR-VCENIPIVLCGNKV 129
Query: 125 D-KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
D K + +++V + + Y IS K + N + WL +
Sbjct: 130 DIKDRKVKAKSIVFH------RKKNLQYYDISAKSNYNFEKPFLWLAR 171
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 72
+IG GK+ L++ + +D T+G F + + G +KL WD G RFR+
Sbjct: 13 VIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLERFRS 72
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ Y RG + L V D R++ + L + M S I +++ GNK D
Sbjct: 73 VTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKD 124
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 72/168 (42%), Gaps = 19/168 (11%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQ 67
+ +L L+G GKT+ V TG + + + T+G + + +G + +WD G
Sbjct: 6 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 65
Query: 68 RRFRTMWERYCRGVSAILYVVDAADR---DSVPIARSELHELLMKPSLSGIPLLVLGNKI 124
+F + + Y + + D R +VP H L++ IP+++ GNK+
Sbjct: 66 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP----NWHRDLVR-VCENIPIVLCGNKV 120
Query: 125 D-KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
D K + +++V + + Y IS K + N + WL +
Sbjct: 121 DIKDRKVKAKSIVFH------RKKNLQYYDISAKSNYNFEKPFLWLAR 162
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 72/168 (42%), Gaps = 19/168 (11%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQ 67
+ +L L+G GKT+ V TG + + + T+G + + +G + +WD G
Sbjct: 12 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 71
Query: 68 RRFRTMWERYCRGVSAILYVVDAADR---DSVPIARSELHELLMKPSLSGIPLLVLGNKI 124
+F + + Y + + D R +VP H L++ IP+++ GNK+
Sbjct: 72 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP----NWHRDLVR-VCENIPIVLCGNKV 126
Query: 125 D-KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
D K + +++V + + Y IS K + N + WL +
Sbjct: 127 DIKDRKVKAKSIVFH------RKKNLQYYDISAKSNYNFEKPFLWLAR 168
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 4/124 (3%)
Query: 15 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT---KGNVTIKLWDLGGQRRFR 71
+++ G GK+SLV G + E IPTV R+V K T+++ D G +F
Sbjct: 6 VAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP 65
Query: 72 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELL-MKPSLSGIPLLVLGNKIDKSEAL 130
M A + V R S+ + ++ +K + IP++++GNK D+S +
Sbjct: 66 AMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSR 125
Query: 131 SKQA 134
Q+
Sbjct: 126 EVQS 129
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 18/163 (11%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQRRFRT 72
LIG GK++L++ ++ + T+G F R + TIK +WD GQ R+R
Sbjct: 25 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRA 84
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS- 131
+ Y RG L V D A + L E L + S I ++++GNK D +
Sbjct: 85 ITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIMLVGNKSDLRHLRAV 143
Query: 132 ----KQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLI 170
+A ++ GL I S DS N++A ++
Sbjct: 144 PTDEARAFAEKNGLSFIE--------TSALDSTNVEAAFQTIL 178
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 23/169 (13%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQR 68
+L L+G GKT+ V TG + + I T+G + ++ G + +WD G
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 69 RFRTMWERYCRGVSAILYVVDAADR---DSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+F + + Y + + D R +VP H L++ IP+++ GNK+D
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVP----NWHRDLVR-VCENIPIVLCGNKVD 120
Query: 126 KSEALSKQALVDQLGLESIT---DREVCCYMISCKDSINIDAVIDWLIK 171
E K ++IT + + Y IS K + N + WL +
Sbjct: 121 VKERKVKA--------KTITFHRKKNLQYYDISAKSNYNFEKPFLWLAR 161
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 23/169 (13%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQR 68
+L L+G GKT+ V TG + + I T+G + ++ G + +WD G
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 69 RFRTMWERYCRGVSAILYVVDAADR---DSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+F + + Y + + D R +VP H L++ IP+++ GNK+D
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVP----NWHRDLVR-VCENIPIVLCGNKVD 119
Query: 126 KSEALSKQALVDQLGLESIT---DREVCCYMISCKDSINIDAVIDWLIK 171
E K ++IT + + Y IS K + N + WL +
Sbjct: 120 VKERKVKA--------KTITFHRKKNLQYYDISAKSNYNFEKPFLWLAR 160
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 18/163 (11%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQRRFRT 72
LIG GK++L++ ++ + T+G F R + TIK +WD GQ R+R
Sbjct: 34 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRA 93
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS- 131
+ Y RG L V D A + L E L + S I ++++GNK D +
Sbjct: 94 ITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIMLVGNKSDLRHLRAV 152
Query: 132 ----KQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLI 170
+A ++ GL I S DS N++A ++
Sbjct: 153 PTDEARAFAEKNGLSFIE--------TSALDSTNVEAAFQTIL 187
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 72/168 (42%), Gaps = 19/168 (11%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQ 67
+ +L L+G GKT+ V TG + + + T+G + + +G + +WD G
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 69
Query: 68 RRFRTMWERYCRGVSAILYVVDAADR---DSVPIARSELHELLMKPSLSGIPLLVLGNKI 124
+F + + Y + + D R +VP H L++ IP+++ GNK+
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP----NWHRDLVR-VCENIPIVLCGNKV 124
Query: 125 D-KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
D K + +++V + + Y IS K + N + WL +
Sbjct: 125 DIKDRKVKAKSIVFH------RKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMR--KVTKGNVTIKLWDLGGQRRFRT 72
+IG GK+ L++ + D T+G F R +V+ + +++WD GQ RFR
Sbjct: 20 IIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRA 79
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHEL--LMKPSLSGIPLLVLGNKID 125
+ Y RG + L V D R + S L + L P+ ++++GNK D
Sbjct: 80 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN---TVIILIGNKAD 131
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 71/173 (41%), Gaps = 19/173 (10%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV-----TKG---------NVT 58
++L +G GKT+ + ++ I TVG + R+ +G V
Sbjct: 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 59 IKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLL 118
++LWD GQ RFR++ + R L + D + S R+ + +L ++
Sbjct: 86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145
Query: 119 VLGNKIDKSEALSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAVIDWLI 170
++GNK D L Q V++ + D+ Y S N++ ++ L+
Sbjct: 146 LIGNKAD----LPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLL 194
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 23/169 (13%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQR 68
+L L+G GKT+ V TG + + I T+G + ++ G + +WD G
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 69 RFRTMWERYCRGVSAILYVVDAADR---DSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+F + + Y + + D R +VP H L++ IP+++ GNK+D
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVP----NWHRDLVR-VCENIPIVLCGNKVD 127
Query: 126 KSEALSKQALVDQLGLESIT---DREVCCYMISCKDSINIDAVIDWLIK 171
E K ++IT + + Y IS K + N + WL +
Sbjct: 128 VKERKVKA--------KTITFHRKKNLQYYDISAKSNYNFEKPFLWLAR 168
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQRRFRT 72
LIG GK++L++ ++ + T+G F R + TIK +WD GQ R+R
Sbjct: 10 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRR 69
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ Y RG L V D A + L E L + S I ++++GNK D
Sbjct: 70 ITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIMLVGNKSD 121
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 8/132 (6%)
Query: 18 IGLQNAGKTSLVNTIATGGYSEDMIPTV--GFNMRKVTKG-NVTIKLWDLGGQRRFRTMW 74
+G GKT L+ + + + D +PTV F+ V G V + LWD GQ + +
Sbjct: 14 VGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLR 73
Query: 75 ERYCRGVSAILYVVDAADRDSVP-IARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ 133
RG + + S +++ + EL K G+P++++G K+D + KQ
Sbjct: 74 PLSYRGADVFILAFSLISKASYENVSKKWIPEL--KHYAPGVPIVLVGTKLDLRD--DKQ 129
Query: 134 ALVDQLGLESIT 145
+D G IT
Sbjct: 130 FFIDHPGAVPIT 141
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 15/157 (9%)
Query: 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNV-TIKLWDLGGQR 68
++ LIG GKT+ +N + G + ++ TVG VT +GNV +WD GQ
Sbjct: 13 KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVP-IAR--SELHELLMKPSLSGIPLLVLGNKID 125
+ + + Y G S + D R + +AR E ++ + P++V NKID
Sbjct: 73 KKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEA----PIVVCANKID 128
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINI 162
++Q + +L +E + + + IS K + N
Sbjct: 129 IK---NRQKISKKLVMEVLKGKNYEYFEISAKTAHNF 162
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 3/122 (2%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT---KGNVTIKLWDLGGQRRFRTM 73
++G + GKTSL + G +SE PTV K+ K + L D GQ + +
Sbjct: 29 ILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSIL 88
Query: 74 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ 133
+ GV + V S + S +L + +P++++GNK D S Q
Sbjct: 89 PYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQ 148
Query: 134 AL 135
A+
Sbjct: 149 AV 150
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 5/119 (4%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGG 66
++ +L +G Q+ GKTSL+ + T+G + T + ++LWD G
Sbjct: 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 71
Query: 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
RFR++ Y R +A + V D + +S + ++ + S + ++++GNK D
Sbjct: 72 LERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTD 129
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 70/166 (42%), Gaps = 9/166 (5%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGN-VTIKLWDLGGQRRFRTM 73
++G GK++L + ED PT + RK V G V I + D G + +
Sbjct: 8 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAI 67
Query: 74 WERYCRGVSAILYVVDAADRDSVPIARSELHE--LLMKPSLSGIPLLVLGNKIDKSEALS 131
+ Y R L V + +S A +E E L +K IPLLV+GNK D E
Sbjct: 68 RDNYFRSGEGFLLVFSITEHESF-TATAEFREQILRVKAEEDKIPLLVVGNKSDLEE--R 124
Query: 132 KQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
+Q V++ + V S K N+D V L++ +T K
Sbjct: 125 RQVPVEE-ARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTKK 169
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMR--KVTKGNVTIKLWDLGGQRRFRT 72
+IG GK+ L++ + D T+G F R +V+ + +++WD GQ RFR
Sbjct: 35 IIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGRFRA 94
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHEL--LMKPSLSGIPLLVLGNKID 125
+ Y RG + L V D R + S L + L P+ ++++GNK D
Sbjct: 95 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN---TVIILIGNKAD 146
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 17 LIGLQNAGKTSLVNTIATGGYS--EDMIPTVGFNMRKVTKGNVTIKL--WDLGGQRRFRT 72
+IG GK+ L+ + D+ V F R +T IKL WD GQ FR+
Sbjct: 15 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRS 74
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ Y RG + L V D RD+ + L E + S S + ++++GNK D
Sbjct: 75 ITRSYYRGAAGALLVYDITRRDTFNHLTTWL-EDARQHSNSNMVIMLIGNKSD 126
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 70/166 (42%), Gaps = 9/166 (5%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGN-VTIKLWDLGGQRRFRTM 73
++G GK++L + ED PT + RK V G V I + D G + +
Sbjct: 12 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAI 71
Query: 74 WERYCRGVSAILYVVDAADRDSVPIARSELHE--LLMKPSLSGIPLLVLGNKIDKSEALS 131
+ Y R L V + +S A +E E L +K IPLLV+GNK D E
Sbjct: 72 RDNYFRSGEGFLLVFSITEHESF-TATAEFREQILRVKAEEDKIPLLVVGNKSDLEE--R 128
Query: 132 KQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
+Q V++ + V S K N+D V L++ +T K
Sbjct: 129 RQVPVEE-ARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTKK 173
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 5/119 (4%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGG 66
++ +L +G Q+ GKTSL+ + T+G + T V ++LWD G
Sbjct: 5 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 64
Query: 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
RFR++ Y R + + V D + +S + ++ + S + ++++GNK D
Sbjct: 65 LERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTD 122
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 9/123 (7%)
Query: 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMR--KVTKGNVTIKLW 62
L FK + LIG GK++L++ ++ D T+G F R ++ + ++W
Sbjct: 12 LLFK----IVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIW 67
Query: 63 DLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGN 122
D GQ R+R + Y RG L V D + S L E L + + + + ++GN
Sbjct: 68 DTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSE-LRENADDNVAVGLIGN 126
Query: 123 KID 125
K D
Sbjct: 127 KSD 129
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQRRFRT 72
LIG GK++L++ ++ + T+G F R + TIK +WD G R+R
Sbjct: 13 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRA 72
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ Y RG L V D A + L E L + S I ++++GNK D
Sbjct: 73 ITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIMLVGNKSD 124
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 56 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGI 115
N+ +WD GQ R+ ++ Y RG + + V D ++ +++ A++ +++L + S
Sbjct: 92 NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS---SNY 148
Query: 116 PLLVLGNKIDKSE 128
++++ NKIDK++
Sbjct: 149 IIILVANKIDKNK 161
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Query: 17 LIGLQNAGKTSLVNTIATGGYS--EDMIPTVGFNMRKVTKGNVTIKL--WDLGGQRRFRT 72
+IG GK+ L+ + D+ V F R V IKL WD GQ FR+
Sbjct: 26 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS 85
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ Y RG + L V D R++ S L + S S + ++++GNK D
Sbjct: 86 ITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS-SNMVIMLIGNKSD 137
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 5/119 (4%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGG 66
++ +L +G Q+ GKTSL+ + T+G + T V ++LWD G
Sbjct: 15 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 74
Query: 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
RFR++ Y R + + V D + +S + ++ + S + ++++GNK D
Sbjct: 75 LERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTD 132
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQR 68
++ LIG GK++L++ T ++ + T+G F R + N IK +WD G
Sbjct: 11 FKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLE 70
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
R+R + Y RG L V D + S L E L + + + + ++GNK D
Sbjct: 71 RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTE-LRENADDNVAVGLIGNKSD 126
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 19/148 (12%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV-----TKG---------NVT 58
++L +G GKT+ + ++ I TVG + R+ T+G V
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 59 IKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLL 118
++LWD G RFR++ + R L + D + S R+ + +L ++
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131
Query: 119 VLGNKI---DKSEALSKQA--LVDQLGL 141
++GNK D+ E +QA L ++ G+
Sbjct: 132 LIGNKADLPDQREVNERQARELAEKYGI 159
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 18/163 (11%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQRRFRT 72
LIG GK++L++ ++ + T+G F R + TIK +WD G R+R
Sbjct: 34 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRA 93
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS- 131
+ Y RG L V D A + L E L + S I ++++GNK D +
Sbjct: 94 ITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIMLVGNKSDLRHLRAV 152
Query: 132 ----KQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLI 170
+A ++ GL I S DS N++A ++
Sbjct: 153 PTDEARAFAEKNGLSFIE--------TSALDSTNVEAAFQTIL 187
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Gppnhp
Length = 353
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 64/169 (37%), Gaps = 37/169 (21%)
Query: 42 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARS 101
+PT G T ++ K++D+GGQR R W GV+AI++ V +D D V
Sbjct: 178 VPTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 237
Query: 102 ELHEL-----------------------------LMKPSLSGIPLLVLGNKIDKSEALSK 132
E++ + L + + PL + + S +
Sbjct: 238 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEE 297
Query: 133 QALVDQLGLESITDR----EVCCYMISCKDSINI----DAVIDWLIKHS 173
A Q E + R E+ + D+ N+ DAV D +IK++
Sbjct: 298 AAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN 346
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 19/148 (12%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV-----TKG---------NVT 58
++L +G GKT+ + ++ I TVG + R+ T+G V
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 59 IKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLL 118
++LWD G RFR++ + R L + D + S R+ + +L ++
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131
Query: 119 VLGNKI---DKSEALSKQA--LVDQLGL 141
++GNK D+ E +QA L ++ G+
Sbjct: 132 LIGNKADLPDQREVNERQARELAEKYGI 159
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQRRFRT 72
LIG GK++L++ ++ + T+G F R + TIK +WD G R+R
Sbjct: 10 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRA 69
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ Y RG L V D A + L E L + S I + ++GNK D
Sbjct: 70 ITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIXLVGNKSD 121
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQRRFRT 72
LIG GK++L++ ++ + T+G F R + TIK +WD G R+R
Sbjct: 16 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRA 75
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ Y RG L V D A + L E L + S I + ++GNK D
Sbjct: 76 ITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIXLVGNKSD 127
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 19/148 (12%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV-----TKG---------NVT 58
++L +G GKT+ + ++ I TVG + R+ T+G V
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 59 IKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLL 118
++LWD G RFR++ + R L D + S R+ +L ++
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 119 VLGNKI---DKSEALSKQA--LVDQLGL 141
++GNK D+ E +QA L ++ G+
Sbjct: 132 LIGNKADLPDQREVNERQARELAEKYGI 159
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 43 PTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSV 96
PT G + T ++ K++D+GGQR R W GV+AI++ V +D D V
Sbjct: 166 PTKGIHETHFTFKDLHFKMFDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQV 219
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 19/148 (12%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV-----TKG---------NVT 58
++L +G GKT+ + ++ I TVG + R+ T+G V
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 59 IKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLL 118
++LWD G RFR++ + R L D + S R+ +L ++
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 119 VLGNKI---DKSEALSKQA--LVDQLGL 141
++GNK D+ E +QA L ++ G+
Sbjct: 132 LIGNKADLPDQREVNERQARELAEKYGI 159
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 65/168 (38%), Gaps = 14/168 (8%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGN-VTIKLWDLGGQRRFRTM 73
++G GK++L + ED PT + RK V G V I + D GQ + +
Sbjct: 23 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAI 82
Query: 74 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ 133
+ Y R L V + +S ++L +P L++GNK D +
Sbjct: 83 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR--- 139
Query: 134 ALVDQLGLESITDR----EVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
Q+ +E +R V S K N+D V L++ + K
Sbjct: 140 ----QVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK 183
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 65/168 (38%), Gaps = 14/168 (8%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGN-VTIKLWDLGGQRRFRTM 73
++G GK++L + ED PT + RK V G V I + D GQ + +
Sbjct: 11 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAI 70
Query: 74 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ 133
+ Y R L V + +S ++L +P L++GNK D +
Sbjct: 71 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR--- 127
Query: 134 ALVDQLGLESITDR----EVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
Q+ +E +R V S K N+D V L++ + K
Sbjct: 128 ----QVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK 171
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 58/151 (38%), Gaps = 8/151 (5%)
Query: 25 KTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGV 81
K++L + D PT+ + K + + + D GQ F M E+Y R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTG 77
Query: 82 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGL 141
L V DR S ++L P++++GNK D L Q V Q
Sbjct: 78 EGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKAD----LDHQRQVTQEEG 133
Query: 142 ESITDREVCCYM-ISCKDSINIDAVIDWLIK 171
+ + + YM S K +N+D L++
Sbjct: 134 QQLARQLKVTYMEASAKIRMNVDQAFHELVR 164
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 20/146 (13%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT---KGN-VTIKLWDLGG 66
+ +++ L+G GKTSL+ A G + E PTV F V KG V + +WD G
Sbjct: 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTV-FERYMVNLQVKGKPVHLHIWDTAG 91
Query: 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVP--IAR--SELHELLMKPSLSGIPLLVLGN 122
Q + + + S +L D +S R E++ K +P++V+G
Sbjct: 92 QDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKK-----VPIIVVGC 146
Query: 123 KIDKSEALSKQALVDQL---GLESIT 145
K D + ++LV++L GLE +T
Sbjct: 147 KTDLRK---DKSLVNKLRRNGLEPVT 169
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 65/168 (38%), Gaps = 14/168 (8%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGN-VTIKLWDLGGQRRFRTM 73
++G GK++L + ED PT + RK V G V I + D GQ + +
Sbjct: 19 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAI 78
Query: 74 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ 133
+ Y R L V + +S ++L +P L++GNK D +
Sbjct: 79 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR--- 135
Query: 134 ALVDQLGLESITDR----EVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
Q+ +E +R V S K N+D V L++ + K
Sbjct: 136 ----QVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK 179
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 16/154 (10%)
Query: 25 KTSLVNTIATGGYSEDMIPTVGFNMRKV---TKGNVTIKLWDLGGQRRFRTMWERYCRGV 81
K+SLV G + + IPT+ R+V K T+++ D G +F M
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG 80
Query: 82 SAILYVVDAADRDSV----PIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVD 137
A + V + S+ PI + + +K S+ IP++++GNK D++ Q VD
Sbjct: 81 HAFILVFSVTSKQSLEELGPIYKLIVQ---IKGSVEDIPVMLVGNKCDET-----QREVD 132
Query: 138 QLGLESITDREVCCYM-ISCKDSINIDAVIDWLI 170
+++ C +M S K + N+ + L+
Sbjct: 133 TREAQAVAQEWKCAFMETSAKMNYNVKELFQELL 166
>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3
Length = 184
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 77/166 (46%), Gaps = 12/166 (7%)
Query: 6 SLFFK-QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG-FNMRKVTKGNVTIKL-W 62
+L+F+ E+++ ++G ++GK++LV+ TG Y ++ P G F V G + L
Sbjct: 13 NLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIR 72
Query: 63 DLGGQRRFR-TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLG 121
D GG + W V A+++V D S + L + S +P++++G
Sbjct: 73 DEGGPPELQFAAW------VDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVG 126
Query: 122 NKIDKSEALSKQALVDQLGLESITDREVCCYMISCKD-SINIDAVI 166
+ D A + + + D + TD + C Y +C +N++ V
Sbjct: 127 TQ-DAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVF 171
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 63/163 (38%), Gaps = 14/163 (8%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGN-VTIKLWDLGGQRRFRTM 73
++G GK++L + ED PT + RK V G V I + D GQ + +
Sbjct: 9 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAI 68
Query: 74 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ 133
+ Y R L V + +S ++L +P L++GNK D +
Sbjct: 69 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR--- 125
Query: 134 ALVDQLGLESITDR----EVCCYMISCKDSINIDAVIDWLIKH 172
Q+ +E +R V S K N+D V L++
Sbjct: 126 ----QVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMRE 164
>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 333
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 58/158 (36%), Gaps = 32/158 (20%)
Query: 42 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSV---PI 98
+ T G T N+ +L+D+GGQR R W V+AI++ V + D V
Sbjct: 159 VKTTGIVETHFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTAIIFCVALSGYDQVLHEDE 218
Query: 99 ARSELHELLM---------------------KPSLSG-----IPLLVLGNKIDKSEALSK 132
+ +HE LM K L G PL + + S
Sbjct: 219 TTNRMHESLMLFDSICNNKFFIDTSIILFLNKKDLFGEKIKKSPLTICFPEYPGSNTYED 278
Query: 133 QALVDQLGLESIT---DREVCCYMISCKDSINIDAVID 167
A Q ES ++E+ C+M D+ NI V D
Sbjct: 279 AAAYIQTQFESKNRSPNKEIYCHMTCATDTNNIQVVFD 316
>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp-Alf4
pdb|3CX8|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gtp-Gamma-S
Length = 338
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 60/148 (40%), Gaps = 14/148 (9%)
Query: 43 PTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSE 102
PT G + NV K+ D+GGQR R W V++IL++V +++ D V + +
Sbjct: 163 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQ 222
Query: 103 LHEL----------LMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITD----RE 148
+ L + S + +++ NK D E + + LE D R+
Sbjct: 223 TNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRD 282
Query: 149 VCCYMISCKDSINIDAVIDWLIKHSKTA 176
V +++ C D L H TA
Sbjct: 283 VQKFLVECFRGKRRDQQQRPLYHHFTTA 310
>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp
pdb|3AB3|A Chain A, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
pdb|3AB3|C Chain C, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
Length = 362
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 60/148 (40%), Gaps = 14/148 (9%)
Query: 43 PTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSE 102
PT G + NV K+ D+GGQR R W V++IL++V +++ D V + +
Sbjct: 187 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQ 246
Query: 103 LHEL----------LMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITD----RE 148
+ L + S + +++ NK D E + + LE D R+
Sbjct: 247 TNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRD 306
Query: 149 VCCYMISCKDSINIDAVIDWLIKHSKTA 176
V +++ C D L H TA
Sbjct: 307 VQKFLVECFRGKRRDQQQRPLYHHFTTA 334
>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|B Chain B, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|C Chain C, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|D Chain D, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
Length = 329
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 63/169 (37%), Gaps = 37/169 (21%)
Query: 42 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARS 101
+ T G T ++ K++D+GGQR R W GV+AI++ V +D D V
Sbjct: 154 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 213
Query: 102 ELHEL-----------------------------LMKPSLSGIPLLVLGNKIDKSEALSK 132
E++ + L + + PL + + S +
Sbjct: 214 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEE 273
Query: 133 QALVDQLGLESITDR----EVCCYMISCKDSINI----DAVIDWLIKHS 173
A Q E + R E+ + D+ N+ DAV D +IK++
Sbjct: 274 AAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN 322
>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
Length = 328
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 63/169 (37%), Gaps = 37/169 (21%)
Query: 42 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARS 101
+ T G T ++ K++D+GGQR R W GV+AI++ V +D D V
Sbjct: 153 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 212
Query: 102 ELHEL-----------------------------LMKPSLSGIPLLVLGNKIDKSEALSK 132
E++ + L + + PL + + S +
Sbjct: 213 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEE 272
Query: 133 QALVDQLGLESITDR----EVCCYMISCKDSINI----DAVIDWLIKHS 173
A Q E + R E+ + D+ N+ DAV D +IK++
Sbjct: 273 AAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN 321
>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
Length = 327
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 63/169 (37%), Gaps = 37/169 (21%)
Query: 42 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARS 101
+ T G T ++ K++D+GGQR R W GV+AI++ V +D D V
Sbjct: 152 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 211
Query: 102 ELHEL-----------------------------LMKPSLSGIPLLVLGNKIDKSEALSK 132
E++ + L + + PL + + S +
Sbjct: 212 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEE 271
Query: 133 QALVDQLGLESITDR----EVCCYMISCKDSINI----DAVIDWLIKHS 173
A Q E + R E+ + D+ N+ DAV D +IK++
Sbjct: 272 AAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN 320
>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|B Chain B, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|C Chain C, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|D Chain D, Structure Of Lgn Gl4GALPHAI1 COMPLEX
Length = 330
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 63/169 (37%), Gaps = 37/169 (21%)
Query: 42 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARS 101
+ T G T ++ K++D+GGQR R W GV+AI++ V +D D V
Sbjct: 155 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 214
Query: 102 ELHEL-----------------------------LMKPSLSGIPLLVLGNKIDKSEALSK 132
E++ + L + + PL + + S +
Sbjct: 215 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEE 274
Query: 133 QALVDQLGLESITDR----EVCCYMISCKDSINI----DAVIDWLIKHS 173
A Q E + R E+ + D+ N+ DAV D +IK++
Sbjct: 275 AAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN 323
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 7/117 (5%)
Query: 15 LSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQRRFRT 72
++++G + GKT+L++ I +E T +VT + I D G F T
Sbjct: 11 VTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTT 70
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129
M R + V+ I+ +V AAD +P + E + + +P++V NK+DK EA
Sbjct: 71 MRARGAQ-VTDIVILVVAADDGVMP----QTVEAINHAKAANVPIIVAINKMDKPEA 122
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 63/169 (37%), Gaps = 37/169 (21%)
Query: 42 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARS 101
+ T G T ++ K++D+GGQR R W GV+AI++ V +D D V
Sbjct: 153 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 212
Query: 102 ELHEL-----------------------------LMKPSLSGIPLLVLGNKIDKSEALSK 132
E++ + L + + PL + + S +
Sbjct: 213 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEE 272
Query: 133 QALVDQLGLESITDR----EVCCYMISCKDSINI----DAVIDWLIKHS 173
A Q E + R E+ + D+ N+ DAV D +IK++
Sbjct: 273 AAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN 321
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 8/151 (5%)
Query: 25 KTSLVNTIATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQRRFRTMWERYCRGV 81
K++L + D PT+ + K+ + + + D GQ F M E+Y R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 81
Query: 82 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID-KSEALSKQALVDQLG 140
L V DR S ++L P++++GNK D +S+ ++ G
Sbjct: 82 HGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFG 141
Query: 141 LESITDREVCCYMISCKDSINIDAVIDWLIK 171
V + S K +N+D + L++
Sbjct: 142 ----ASHHVAYFEASAKLRLNVDEAFEQLVR 168
>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|B Chain B, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|C Chain C, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
Length = 325
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 63/169 (37%), Gaps = 37/169 (21%)
Query: 42 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARS 101
+ T G T ++ K++D+GGQR R W GV+AI++ V +D D V
Sbjct: 150 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 209
Query: 102 ELHEL-----------------------------LMKPSLSGIPLLVLGNKIDKSEALSK 132
E++ + L + + PL + + S +
Sbjct: 210 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEE 269
Query: 133 QALVDQLGLESITDR----EVCCYMISCKDSINI----DAVIDWLIKHS 173
A Q E + R E+ + D+ N+ DAV D +IK++
Sbjct: 270 AAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN 318
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 9/134 (6%)
Query: 43 PTVGFNMRKVTKGN---VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIA 99
PT+ + RK T+ + + + D GQ F M E+Y R L V D+ S
Sbjct: 49 PTIEDSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV 108
Query: 100 RSELHELLMK-PSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKD 158
H+L+++ P++++ NK+D + + + G E T + S KD
Sbjct: 109 -DRFHQLILRVKDRESFPMILVANKVD---LMHLRKVTRDQGKEMATKYNIPYIETSAKD 164
Query: 159 -SINIDAVIDWLIK 171
+N+D L++
Sbjct: 165 PPLNVDKTFHDLVR 178
>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 324
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 63/169 (37%), Gaps = 37/169 (21%)
Query: 42 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARS 101
+ T G T ++ K++D+GGQR R W GV+AI++ V +D D V
Sbjct: 149 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 208
Query: 102 ELHEL-----------------------------LMKPSLSGIPLLVLGNKIDKSEALSK 132
E++ + L + + PL + + S +
Sbjct: 209 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEE 268
Query: 133 QALVDQLGLESITDR----EVCCYMISCKDSINI----DAVIDWLIKHS 173
A Q E + R E+ + D+ N+ DAV D +IK++
Sbjct: 269 AAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN 317
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
Length = 325
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 63/169 (37%), Gaps = 37/169 (21%)
Query: 42 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARS 101
+ T G T ++ K++D+GGQR R W GV+AI++ V +D D V
Sbjct: 150 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 209
Query: 102 ELHEL-----------------------------LMKPSLSGIPLLVLGNKIDKSEALSK 132
E++ + L + + PL + + S +
Sbjct: 210 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEE 269
Query: 133 QALVDQLGLESITDR----EVCCYMISCKDSINI----DAVIDWLIKHS 173
A Q E + R E+ + D+ N+ DAV D +IK++
Sbjct: 270 AAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN 318
>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 323
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 63/169 (37%), Gaps = 37/169 (21%)
Query: 42 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARS 101
+ T G T ++ K++D+GGQR R W GV+AI++ V +D D V
Sbjct: 148 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 207
Query: 102 ELHEL-----------------------------LMKPSLSGIPLLVLGNKIDKSEALSK 132
E++ + L + + PL + + S +
Sbjct: 208 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEE 267
Query: 133 QALVDQLGLESITDR----EVCCYMISCKDSINI----DAVIDWLIKHS 173
A Q E + R E+ + D+ N+ DAV D +IK++
Sbjct: 268 AAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN 316
>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Alf4 And Gdp
pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
Length = 356
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 63/169 (37%), Gaps = 37/169 (21%)
Query: 42 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARS 101
+ T G T ++ K++D+GGQR R W GV+AI++ V +D D V
Sbjct: 181 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 240
Query: 102 ELHEL-----------------------------LMKPSLSGIPLLVLGNKIDKSEALSK 132
E++ + L + + PL + + S +
Sbjct: 241 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEE 300
Query: 133 QALVDQLGLESITDR----EVCCYMISCKDSINI----DAVIDWLIKHS 173
A Q E + R E+ + D+ N+ DAV D +IK++
Sbjct: 301 AAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN 349
>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
pdb|2G83|B Chain B, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
Length = 313
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%)
Query: 42 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARS 101
+ T G T ++ K++D+GGQR R W GV+AI++ V +D D V
Sbjct: 147 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 206
Query: 102 ELHEL 106
E++ +
Sbjct: 207 EMNRM 211
>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
Length = 360
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 63/169 (37%), Gaps = 37/169 (21%)
Query: 42 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARS 101
+ T G T ++ K++D+GGQR R W GV+AI++ V +D D V
Sbjct: 185 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 244
Query: 102 ELHEL-----------------------------LMKPSLSGIPLLVLGNKIDKSEALSK 132
E++ + L + + PL + + S +
Sbjct: 245 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEE 304
Query: 133 QALVDQLGLESITDR----EVCCYMISCKDSINI----DAVIDWLIKHS 173
A Q E + R E+ + D+ N+ DAV D +IK++
Sbjct: 305 AAAYIQCQFEDLNKRKDTKEIYTHFTCATDAKNVQFVFDAVTDVIIKNN 353
>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1
pdb|1AS2|A Chain A, Gdp+pi Bound G42v Gia1
pdb|1AS3|A Chain A, Gdp Bound G42v Gia1
Length = 353
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 63/169 (37%), Gaps = 37/169 (21%)
Query: 42 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARS 101
+ T G T ++ K++D+GGQR R W GV+AI++ V +D D V
Sbjct: 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 237
Query: 102 ELHEL-----------------------------LMKPSLSGIPLLVLGNKIDKSEALSK 132
E++ + L + + PL + + S +
Sbjct: 238 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEE 297
Query: 133 QALVDQLGLESITDR----EVCCYMISCKDSINI----DAVIDWLIKHS 173
A Q E + R E+ + D+ N+ DAV D +IK++
Sbjct: 298 AAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN 346
>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double
Mutant I56cQ333C
Length = 354
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%)
Query: 42 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARS 101
+ T G T ++ K++D+GGQR R W GV+AI++ V +D D V
Sbjct: 179 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 238
Query: 102 ELHEL 106
E++ +
Sbjct: 239 EMNRM 243
>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1BOF|A Chain A, Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD|A Chain A, Tertiary And Quaternary Structural Changes In Gia1 Induced
By Gtp Hydrolysis
pdb|1GFI|A Chain A, Structures Of Active Conformations Of Gi Alpha 1 And The
Mechanism Of Gtp Hydrolysis
pdb|1GIA|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 63/169 (37%), Gaps = 37/169 (21%)
Query: 42 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARS 101
+ T G T ++ K++D+GGQR R W GV+AI++ V +D D V
Sbjct: 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 237
Query: 102 ELHEL-----------------------------LMKPSLSGIPLLVLGNKIDKSEALSK 132
E++ + L + + PL + + S +
Sbjct: 238 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEE 297
Query: 133 QALVDQLGLESITDR----EVCCYMISCKDSINI----DAVIDWLIKHS 173
A Q E + R E+ + D+ N+ DAV D +IK++
Sbjct: 298 AAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN 346
>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit
Length = 315
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%)
Query: 42 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARS 101
+ T G T ++ K++D+GGQR R W GV+AI++ V +D D V
Sbjct: 148 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 207
Query: 102 ELHEL 106
E++ +
Sbjct: 208 EMNRM 212
>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 330
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%)
Query: 42 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARS 101
+ T G T ++ K++D+GGQR R W GV+AI++ V +D D V
Sbjct: 155 VKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 214
Query: 102 ELHEL 106
E++ +
Sbjct: 215 EMNRM 219
>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 330
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%)
Query: 42 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARS 101
+ T G T ++ K++D+GGQR R W GV+AI++ V +D D V
Sbjct: 155 VKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 214
Query: 102 ELHEL 106
E++ +
Sbjct: 215 EMNRM 219
>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 323
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%)
Query: 42 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARS 101
+ T G T ++ K++D+GGQR R W GV+AI++ V +D D V
Sbjct: 148 VKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 207
Query: 102 ELHEL 106
E++ +
Sbjct: 208 EMNRM 212
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%)
Query: 42 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARS 101
+ T G T ++ K++D+GGQR R W GV+AI++ V +D D V
Sbjct: 178 VKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 237
Query: 102 ELHEL 106
E++ +
Sbjct: 238 EMNRM 242
>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%)
Query: 42 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARS 101
+ T G + + ++ +++D+GGQR R W GV+AI++ V +D D V
Sbjct: 150 VKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 209
Query: 102 ELHEL 106
E++ +
Sbjct: 210 EMNRM 214
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%)
Query: 42 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARS 101
+ T G + + ++ +++D+GGQR R W GV+AI++ V +D D V
Sbjct: 181 VKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 240
Query: 102 ELHEL 106
E++ +
Sbjct: 241 EMNRM 245
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 28/176 (15%)
Query: 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIK----- 60
+L QE+++ LIG AGKTSL+ + + T G N+ VTK IK
Sbjct: 35 ALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNV--VTKQAPNIKGLEND 92
Query: 61 ---------LWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPS 111
WD GGQ + + S + ++D+ S H L
Sbjct: 93 DELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR-------TDSNKHYWLRHIE 145
Query: 112 LSG--IPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 165
G P++V+ NKID++ + + + +I +R + ISCK+ ++++
Sbjct: 146 KYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENR---FHRISCKNGDGVESI 198
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQRRF 70
L+G GKTSLV + T GY + IPT N V + V ++L D GQ F
Sbjct: 25 LVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEF 81
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQR 68
E +L ++G + GK++L + + ++ PT+ + RK V G + + D GQ
Sbjct: 3 EYKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ M ++Y R L V + S ++ +P++++GNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 64/168 (38%), Gaps = 14/168 (8%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGN-VTIKLWDLGGQRRFRTM 73
++G GK++L + ED PT + RK V G V I + D G + +
Sbjct: 11 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAI 70
Query: 74 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ 133
+ Y R L V + +S ++L +P L++GNK D +
Sbjct: 71 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR--- 127
Query: 134 ALVDQLGLESITDR----EVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
Q+ +E +R V S K N+D V L++ + K
Sbjct: 128 ----QVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK 171
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQR 68
E +L ++G GK++L + + ++ PT+ + RK V G + + D GQ
Sbjct: 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 63
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ M ++Y R L V + S ++ +P++++GNK D
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCD 120
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQR 68
E +L ++G GK++L + + ++ PT+ + RK V G + + D GQ
Sbjct: 3 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ M ++Y R L V + S ++ +P++++GNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 9/140 (6%)
Query: 37 YSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADR 93
+ +D PT+ + K T+ + + + D GQ F M E+Y R L V D+
Sbjct: 43 FVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDK 102
Query: 94 DSVPIARSELHELLMK-PSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCY 152
S H+L+++ P++++ NK+D ++ DQ G E T +
Sbjct: 103 ASFEHV-DRFHQLILRVKDRESFPMILVANKVDLMHL--RKVTRDQ-GKEMATKYNIPYI 158
Query: 153 MISCKD-SINIDAVIDWLIK 171
S KD +N+D L++
Sbjct: 159 ETSAKDPPLNVDKTFHDLVR 178
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 71/167 (42%), Gaps = 9/167 (5%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 67
+E +L ++G GK++L G + E PT+ + RK V +++ D G
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127
+F M + Y + V + + + ++L +P++++GNK D
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD-- 119
Query: 128 EALSKQALVDQLGLESITDREVCCYMI--SCKDSINIDAVIDWLIKH 172
L + +V + +++ + C + S K IN++ + L++
Sbjct: 120 --LEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQ 164
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 71/167 (42%), Gaps = 9/167 (5%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 67
+E +L ++G GK++L G + E PT+ + RK V +++ D G
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGT 61
Query: 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127
+F M + Y + V + + + ++L +P++++GNK D
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCD-- 119
Query: 128 EALSKQALVDQLGLESITDREVCCYMI--SCKDSINIDAVIDWLIKH 172
L + +V + +++ + C + S K IN++ + L++
Sbjct: 120 --LEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQ 164
>pdb|1ZCA|A Chain A, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
pdb|1ZCA|B Chain B, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
Length = 359
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 9/56 (16%)
Query: 50 RKVTKG---------NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSV 96
RK TKG + K+ D+GGQR R W + G+++IL++V +++ D V
Sbjct: 183 RKATKGIVEHDFVIKKIPFKMVDVGGQRSQRQKWFQCFDGITSILFMVSSSEYDQV 238
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQR 68
E +L ++G GK++L + + ++ PT+ + RK V G + + D GQ
Sbjct: 3 EYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ M ++Y R L V + S ++ +P++++GNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 6/115 (5%)
Query: 59 IKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMK-PSLSGIPL 117
+ + D GQ F M E+Y R L V D+ S H+L+++ P+
Sbjct: 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRESFPM 126
Query: 118 LVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKD-SINIDAVIDWLIK 171
+++ NK+D ++ DQ G E T + S KD +N+D L++
Sbjct: 127 ILVANKVDLMHL--RKVTRDQ-GKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178
>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1
Length = 354
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 62/169 (36%), Gaps = 37/169 (21%)
Query: 42 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARS 101
+ T G T ++ K++D+ GQR R W GV+AI++ V +D D V
Sbjct: 179 VKTTGIVETHFTFKDLHFKMFDVAGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 238
Query: 102 ELHEL-----------------------------LMKPSLSGIPLLVLGNKIDKSEALSK 132
E++ + L + + PL + + S +
Sbjct: 239 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEE 298
Query: 133 QALVDQLGLESITDR----EVCCYMISCKDSINI----DAVIDWLIKHS 173
A Q E + R E+ + D+ N+ DAV D +IK++
Sbjct: 299 AAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN 347
>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GIT|A Chain A, Structure Of Gtp-Binding Protein
Length = 353
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 62/169 (36%), Gaps = 37/169 (21%)
Query: 42 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARS 101
+ T G T ++ K++D+G QR R W GV+AI++ V +D D V
Sbjct: 178 VKTTGIVETHFTFKDLHFKMFDVGAQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 237
Query: 102 ELHEL-----------------------------LMKPSLSGIPLLVLGNKIDKSEALSK 132
E++ + L + + PL + + S +
Sbjct: 238 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEE 297
Query: 133 QALVDQLGLESITDR----EVCCYMISCKDSINI----DAVIDWLIKHS 173
A Q E + R E+ + D+ N+ DAV D +IK++
Sbjct: 298 AAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN 346
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 71/167 (42%), Gaps = 9/167 (5%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 67
+E +L ++G GK++L G + E PT+ + RK V +++ D G
Sbjct: 4 REYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGT 63
Query: 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127
+F M + Y + V + + + ++L +P++++GNK D
Sbjct: 64 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCD-- 121
Query: 128 EALSKQALVDQLGLESITDREVCCYMI--SCKDSINIDAVIDWLIKH 172
L + +V + +++ + C + S K IN++ + L++
Sbjct: 122 --LEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQ 166
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQR 68
E +L ++G GK++L + + ++ PT+ + RK V G + + D GQ
Sbjct: 3 EYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ M ++Y R L V + S ++ +P++++GNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 6/115 (5%)
Query: 59 IKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMK-PSLSGIPL 117
+ + D GQ F M E+Y R L V D+ S H+L+++ P+
Sbjct: 63 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRESFPM 121
Query: 118 LVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKD-SINIDAVIDWLIK 171
+++ NK+D ++ DQ G E T + S KD +N+D L++
Sbjct: 122 ILVANKVDLMHL--RKVTRDQ-GKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 173
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/167 (19%), Positives = 72/167 (43%), Gaps = 9/167 (5%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 67
+E +L ++G GK++L G + ++ PT+ + RK V +++ D G
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127
+F M + Y + V + + + ++L +P++++GNK D
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD-- 119
Query: 128 EALSKQALVDQLGLESITDREVCCYMI--SCKDSINIDAVIDWLIKH 172
L + +V + +++ + C + S K IN++ + L++
Sbjct: 120 --LEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQ 164
>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp
Length = 338
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 59/148 (39%), Gaps = 14/148 (9%)
Query: 43 PTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSE 102
PT G + NV K+ D+GG R R W V++IL++V +++ D V + +
Sbjct: 163 PTKGIHEYDFEIKNVPFKMVDVGGLRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQ 222
Query: 103 LHEL----------LMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITD----RE 148
+ L + S + +++ NK D E + + LE D R+
Sbjct: 223 TNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRD 282
Query: 149 VCCYMISCKDSINIDAVIDWLIKHSKTA 176
V +++ C D L H TA
Sbjct: 283 VQKFLVECFRGKRRDQQQRPLYHHFTTA 310
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQR 68
E +L ++G GK++L + + ++ PT+ + RK V G + + D GQ
Sbjct: 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 63
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ M ++Y R L V + S ++ +P++++GNK D
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSD 120
>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1
Length = 354
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 42 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARS 101
+ T G T ++ K++D+ GQR R W GV+AI++ V +D D V
Sbjct: 179 VKTTGIVETHFTFKDLHFKMFDVDGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 238
Query: 102 ELHEL 106
E++ +
Sbjct: 239 EMNRM 243
>pdb|2FH5|B Chain B, The Structure Of The Mammalian Srp Receptor
pdb|2GO5|2 Chain 2, Structure Of Signal Recognition Particle Receptor (Sr) In
Complex With Signal Recognition Particle (Srp) And
Ribosome Nascent Chain Complex
Length = 214
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 8/133 (6%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIP-TVGFNMRKV--TKGNVTIKLWDLGGQRRFR-T 72
+GL ++GKT L + TG Y + T + KV +GN ++ L DL G R
Sbjct: 12 FVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGN-SLTLIDLPGHESLRFQ 70
Query: 73 MWERYCRGVSAILYVVDAA--DRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEA 129
+ +R+ A+++VVD+A R+ +A L+ +L P LL+ NK D + A
Sbjct: 71 LLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 130
Query: 130 LSKQALVDQLGLE 142
S + + QL E
Sbjct: 131 KSAKLIQQQLEKE 143
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/104 (21%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 25 KTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGV 81
K++L TG + E PT+ RK V +++ D G +F +M + Y +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNG 75
Query: 82 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ V ++ S + +++ +P++++GNK+D
Sbjct: 76 QGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVD 119
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQRRF 70
+L L+G GKT+++ +A Y E +PTV N + + V + LWD G +
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 72
Query: 71 RTMWERYCRGVSAILYVVDAADRDSV 96
+ A+L D + ++V
Sbjct: 73 DNVRPLCYSDSDAVLLCFDISRPETV 98
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQRRF 70
+L L+G GKT+++ +A Y E +PTV N + + V + LWD G +
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 71
Query: 71 RTMWERYCRGVSAILYVVDAADRDSV 96
+ A+L D + ++V
Sbjct: 72 DNVRPLCYSDSDAVLLCFDISRPETV 97
>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 62/169 (36%), Gaps = 37/169 (21%)
Query: 42 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARS 101
+ T G T ++ K++D+GG R R W GV+AI++ V +D D V
Sbjct: 178 VKTTGIVETHFTFKDLHFKMFDVGGLRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 237
Query: 102 ELHEL-----------------------------LMKPSLSGIPLLVLGNKIDKSEALSK 132
E++ + L + + PL + + S +
Sbjct: 238 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEE 297
Query: 133 QALVDQLGLESITDR----EVCCYMISCKDSINI----DAVIDWLIKHS 173
A Q E + R E+ + D+ N+ DAV D +IK++
Sbjct: 298 AAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN 346
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Query: 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQRRF 70
+++++G ++ GK+SL G + + PT+ K+ N ++L D GQ +
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 62
Query: 71 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ Y ++ + V S + + +LL IP++++GNK D
Sbjct: 63 SIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD 117
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Query: 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQRRF 70
+++++G ++ GK+SL G + + PT+ K+ N ++L D GQ +
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 67
Query: 71 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ Y ++ + V S + + +LL IP++++GNK D
Sbjct: 68 SIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD 122
>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
Length = 350
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 42 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSV 96
+ T G + + ++ + +D+GGQR R W GV+AI++ V +D D V
Sbjct: 175 VKTTGIIETQFSFKDLNFRXFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLV 229
>pdb|3LLU|A Chain A, Crystal Structure Of The Nucleotide-Binding Domain Of Ras-
Related Gtp-Binding Protein C
Length = 196
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 17/88 (19%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK---------GNVTIKLWDLGGQ 67
L+GL+ +GK+S+ + M P + K V ++WD GQ
Sbjct: 25 LMGLRRSGKSSIQKVVF-----HKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQ 79
Query: 68 RRFRTM---WERYCRGVSAILYVVDAAD 92
F +E RG A++YV+DA D
Sbjct: 80 MDFFDPTFDYEMIFRGTGALIYVIDAQD 107
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Query: 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQRRF 70
+++++G ++ GK+SL G + + PT+ K+ N ++L D GQ +
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 67
Query: 71 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ Y ++ + V S + + +LL IP++++GNK D
Sbjct: 68 SIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD 122
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQRRF 70
+L L+G GKT+++ +A Y E +PTV N + + V + LWD G +
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 88
Query: 71 RTMWERYCRGVSAILYVVDAADRDSV 96
+ A+L D + ++V
Sbjct: 89 DNVRPLCYSDSDAVLLCFDISRPETV 114
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Query: 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQRRF 70
+++++G ++ GK+SL G + + PT+ K+ N ++L D GQ +
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 65
Query: 71 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ Y ++ + V S + + +LL IP++++GNK D
Sbjct: 66 SIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD 120
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 6 SLFFK-QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKL 61
+L+F+ Q ++ ++G GKT L+ + T +S + IPTV N V V + L
Sbjct: 6 NLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGL 65
Query: 62 WDLGGQRRF 70
WD GQ +
Sbjct: 66 WDTAGQEDY 74
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 8/130 (6%)
Query: 6 SLFFKQEME--LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG---FNMRKVTKGNVTIK 60
+L+F+ +E L+++G + AGK++L T + + P + + V V ++
Sbjct: 13 NLYFQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLR 72
Query: 61 LWDLGGQRRFRTMWERYCRGVSAIL--YVVDAADRDSVPIARSELHELLMKPSLSGIPLL 118
+ D R ERY A L Y VD+ + EL L K + IP L
Sbjct: 73 VMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPAL 131
Query: 119 VLGNKIDKSE 128
+LGNK+D ++
Sbjct: 132 LLGNKLDMAQ 141
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 17/143 (11%)
Query: 15 LSLIGLQNAGKTSLVNTIA--TGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR--- 69
+ ++G N+GKTSL N++ T + T+ + N I L D G R
Sbjct: 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIP 241
Query: 70 -------FRTMWERYCRGVSAILYVVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLG 121
F T+ E + A++ V+D+ +++ I E+L + +SG P+LV
Sbjct: 242 PQIVDAFFVTLSE--AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTL 299
Query: 122 NKIDK--SEALSKQALVDQLGLE 142
NKIDK + K LV++L E
Sbjct: 300 NKIDKINGDLYKKLDLVEKLSKE 322
>pdb|3B1Y|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35a Mutant
Bound To Gdp
Length = 272
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 16/135 (11%)
Query: 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTKGNVTIKLWDLGGQRRFR- 71
E++LIG N+GKTSL N I P V + + K N +++ DL G
Sbjct: 5 EIALIGNPNSGKTSLFNLITGHNQRVGNWPGVAVERKSGLVKKNKDLEIQDLPGIYSMSP 64
Query: 72 -TMWERYCRG------VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 124
+ E+ R +IL VVDA + + ++L E +GIP+ + N I
Sbjct: 65 YSPEEKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIE-------TGIPVTIALNMI 117
Query: 125 DKSEALSKQALVDQL 139
D + K+ VD+L
Sbjct: 118 DVLDGQGKKINVDKL 132
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 34.3 bits (77), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 10/118 (8%)
Query: 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQRRF 70
+L ++G GKT L+ + + E +PTV N +V V + LWD GQ +
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 67
Query: 71 RTMWERYCRGVSAIL--YVVDAADR-DSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ IL + +D+ D +++P E +K +P++++GNK D
Sbjct: 68 DRLRPLSYPDTDVILMCFSIDSPDSLENIP----EKWTPEVKHFCPNVPIILVGNKKD 121
>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|B Chain B, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|C Chain C, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
Length = 354
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 41/108 (37%), Gaps = 14/108 (12%)
Query: 28 LVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87
L + T G E VG N K +L+D+GGQR R W GV+A+++
Sbjct: 158 LYARVRTTGVVEIQFSPVGEN----KKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFC 213
Query: 88 VDAADRDSVPIARSELHEL----------LMKPSLSGIPLLVLGNKID 125
++ D + + + L +P ++ NK D
Sbjct: 214 AAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 261
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 10/118 (8%)
Query: 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQRRF 70
+L ++G GKT L+ + + E +PTV N +V V + LWD GQ +
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 67
Query: 71 RTMWERYCRGVSAIL--YVVDAADR-DSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ IL + +D+ D +++P E +K +P++++GNK D
Sbjct: 68 DRLRPLSYPDTDVILMCFSIDSPDSLENIP----EKWTPEVKHFCPNVPIILVGNKKD 121
>pdb|3B1Z|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35s Mutant
Without Nucleotide
Length = 272
Score = 34.3 bits (77), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 16/135 (11%)
Query: 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTKGNVTIKLWDLGGQRRFR- 71
E++LIG N+GKTSL N I P V + + K N +++ DL G
Sbjct: 5 EIALIGNPNSGKTSLFNLITGHNQRVGNWPGVSVERKSGLVKKNKDLEIQDLPGIYSMSP 64
Query: 72 -TMWERYCRG------VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 124
+ E+ R +IL VVDA + + ++L E +GIP+ + N I
Sbjct: 65 YSPEEKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIE-------TGIPVTIALNMI 117
Query: 125 DKSEALSKQALVDQL 139
D + K+ VD+L
Sbjct: 118 DVLDGQGKKINVDKL 132
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 34.3 bits (77), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 10/118 (8%)
Query: 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQRRF 70
+L ++G GKT L+ + + E +PTV N +V V + LWD GQ +
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 71 RTMWERYCRGVSAIL--YVVDAADR-DSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ IL + +D+ D +++P E +K +P++++GNK D
Sbjct: 69 DRLRPLSYPDTDVILMCFSIDSPDSLENIP----EKWTPEVKHFCPNVPIILVGNKKD 122
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 34.3 bits (77), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 10/118 (8%)
Query: 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQRRF 70
+L ++G GKT L+ + + E +PTV N +V V + LWD GQ +
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 71 RTMWERYCRGVSAIL--YVVDAADR-DSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ IL + +D+ D +++P E +K +P++++GNK D
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIP----EKWTPEVKHFCPNVPIILVGNKKD 120
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 10/118 (8%)
Query: 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQRRF 70
+L ++G GKT L+ + + E +PTV N +V V + LWD GQ +
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 70
Query: 71 RTMWERYCRGVSAIL--YVVDAADR-DSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ IL + +D+ D +++P E +K +P++++GNK D
Sbjct: 71 DRLRPLSYPDTDVILMCFSIDSPDSLENIP----EKWTPEVKHFCPNVPIILVGNKKD 124
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
Length = 272
Score = 33.9 bits (76), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 16/135 (11%)
Query: 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTKGNVTIKLWDLGGQRRFR- 71
E++LIG N+GKTSL N I P V + + K N +++ DL G
Sbjct: 5 EIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSP 64
Query: 72 -TMWERYCRG------VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 124
+ E+ R +IL VVDA + + ++L E +GIP+ + N I
Sbjct: 65 YSPAEKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIE-------TGIPVTIALNMI 117
Query: 125 DKSEALSKQALVDQL 139
D + K+ VD+L
Sbjct: 118 DVLDGQGKKINVDKL 132
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 33.9 bits (76), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 10/118 (8%)
Query: 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQRRF 70
+L ++G GKT L+ + + E +PTV N +V V + LWD GQ +
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 69
Query: 71 RTMWERYCRGVSAIL--YVVDAADR-DSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ IL + +D+ D +++P E +K +P++++GNK D
Sbjct: 70 DRLRPLSYPDTDVILMCFSIDSPDSLENIP----EKWTPEVKHFCPNVPIILVGNKKD 123
>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|B Chain B, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|C Chain C, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TAD|A Chain A, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|B Chain B, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|C Chain C, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAG|A Chain A, Structural Determinants For Activation Of The
Alpha-Subunit Of A Heterotrimeric G Protein
Length = 324
Score = 33.9 bits (76), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 33/65 (50%)
Query: 42 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARS 101
+ T G + + ++ +++D+GGQR R W GV+ I+++ + D V +
Sbjct: 149 VKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTCIIFIAALSAYDMVLVEDD 208
Query: 102 ELHEL 106
E++ +
Sbjct: 209 EVNRM 213
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 33.9 bits (76), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 10/118 (8%)
Query: 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQRRF 70
+L ++G GKT L+ + + E +PTV N +V V + LWD GQ +
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 71 RTMWERYCRGVSAIL--YVVDAADR-DSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ IL + +D+ D +++P E +K +P++++GNK D
Sbjct: 69 DRLRPLSYPDTDVILMCFSIDSPDSLENIP----EKWTPEVKHFCPNVPIILVGNKKD 122
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S. Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 16/135 (11%)
Query: 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTKGNVTIKLWDLGGQRRFR- 71
E++LIG N+GKTSL N I P V + + K N +++ DL G
Sbjct: 5 EIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSP 64
Query: 72 -TMWERYCRG------VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 124
+ E+ R +IL VVDA + + ++L E +GIP+ + N I
Sbjct: 65 YSPEEKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIE-------TGIPVTIALNMI 117
Query: 125 DKSEALSKQALVDQL 139
D + K+ VD+L
Sbjct: 118 DVLDGQGKKINVDKL 132
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 33.5 bits (75), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 10/118 (8%)
Query: 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM---RKVTKGNVTIKLWDLGGQRRF 70
+L ++G GKT L+ + + E +PTV N +V V + LWD GQ +
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 71 RTMWERYCRGVSAIL--YVVDAADR-DSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ IL + +D+ D +++P E +K +P++++GNK D
Sbjct: 87 DRLRPLSYPDTDVILMCFSIDSPDSLENIP----EKWTPEVKHFCPNVPIILVGNKKD 140
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 33.5 bits (75), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 10/118 (8%)
Query: 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQRRF 70
+L ++G GKT L+ + + E +PTV N +V V + LWD GQ +
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 71 RTMWERYCRGVSAIL--YVVDAADR-DSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ IL + +D+ D +++P E +K +P++++GNK D
Sbjct: 69 DRLRPLSYPDTDVILMCFSIDSPDSLENIP----EKWTPEVKHFCPNVPIILVGNKKD 122
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 33.5 bits (75), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 6/139 (4%)
Query: 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM---RKVTKGNVTIKLWDLGGQRRF 70
+L ++G GKT L+ + G + E +PTV N +V V + LWD GQ +
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDY 71
Query: 71 RTMWERYCRGVSAILYVVDAADRDSVPIARSE-LHELLMKPSLSGIPLLVLGNKIDKSEA 129
+ + +L DS+ + + + E+L G+P++++G K+D
Sbjct: 72 DRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLH--FCQGVPIILVGCKVDLRND 129
Query: 130 LSKQALVDQLGLESITDRE 148
+ Q G + +T +E
Sbjct: 130 PQTIEQLRQEGQQPVTSQE 148
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 33.5 bits (75), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 10/118 (8%)
Query: 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM---RKVTKGNVTIKLWDLGGQRRF 70
+L ++G GKT L+ + + E +PTV N +V V + LWD GQ +
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 71 RTMWERYCRGVSAIL--YVVDAADR-DSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ IL + +D+ D +++P E +K +P++++GNK D
Sbjct: 87 DRLRPLSYPDTDVILMCFSIDSPDSLENIP----EKWTPEVKHFXPNVPIILVGNKKD 140
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 33.1 bits (74), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 6 SLFFK-QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKL 61
+L+F+ Q ++ ++G GKT L+ + T + + IPTV N V V + L
Sbjct: 23 NLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGL 82
Query: 62 WDLGGQRRF 70
WD GQ +
Sbjct: 83 WDTAGQEDY 91
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 33.1 bits (74), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 67
Q ++ ++G GKT L+ + T + + IPTV N V V + LWD GQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 61
Query: 68 RRF 70
+
Sbjct: 62 EDY 64
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A
Rock-i:rhoe Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A
Rock-i:rhoe Complex Structure
Length = 200
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQRRF 70
++G GKT+L++ A + E+ +PTV N ++ + + LWD G +
Sbjct: 28 VVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 84
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQRRF 70
++G GKT+L++ A + E+ +PTV N ++ + + LWD G +
Sbjct: 12 VVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 68
>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 327
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 42 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSV 96
+PT G +V ++ D+GGQR R W V++I+++V ++ D V
Sbjct: 152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQV 206
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 12/128 (9%)
Query: 6 SLFFKQ--EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIK 60
+L+F+ +L ++G GKT L+ + + E +PTV N +V V +
Sbjct: 17 NLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELA 76
Query: 61 LWDLGGQRRFRTMWERYCRGVSAIL--YVVDAADR-DSVPIARSELHELLMKPSLSGIPL 117
LWD GQ + + IL + VD+ D +++P E +K +P+
Sbjct: 77 LWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIP----EKWVPEVKHFCPNVPI 132
Query: 118 LVLGNKID 125
+++ NK D
Sbjct: 133 ILVANKKD 140
>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|2RGN|A Chain A, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|D Chain D, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 353
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 42 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSV 96
+PT G +V ++ D+GGQR R W V++I+++V ++ D V
Sbjct: 178 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQV 232
>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
Length = 355
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 42 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSV 96
+PT G +V ++ D+GGQR R W V++I+++V ++ D V
Sbjct: 180 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQV 234
>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|C Chain C, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 353
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 42 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSV 96
+PT G +V ++ D+GGQR R W V++I+++V ++ D V
Sbjct: 178 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQV 232
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQRRF 70
++G GKT+L++ A + E+ +PTV N ++ + + LWD G +
Sbjct: 33 VVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 89
>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|C Chain C, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 347
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 42 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSV 96
+PT G +V ++ D+GGQR R W V++I+++V ++ D V
Sbjct: 172 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQV 226
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 67
Q ++ ++G GKT L+ + T + + IPTV N V V + LWD GQ
Sbjct: 8 QAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 67
Query: 68 RRF 70
+
Sbjct: 68 EDY 70
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 67
Q ++ ++G GKT L+ + T + + IPTV N V V + LWD GQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 68 RRF 70
+
Sbjct: 62 EDY 64
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 9/116 (7%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRT 72
L+G GKTSL + A G D+ +G ++ + V + T+ + D +
Sbjct: 9 LLGDPGVGKTSLASLFA-GKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDK 67
Query: 73 MW--ERYCRGVSAILYVVDAADRDSVPIARSELH-ELLMKPSLSGIPLLVLGNKID 125
W E +G SA + V ADR S A SEL +L +P++++GNK D
Sbjct: 68 SWSQESCLQGGSAYVIVYSIADRGSFESA-SELRIQLRRTHQADHVPIILVGNKAD 122
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 17/143 (11%)
Query: 15 LSLIGLQNAGKTSLVNTIA--TGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR--- 69
+ ++G N+GKTSL N++ T + T+ + N I L D R
Sbjct: 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVSFIRGIP 241
Query: 70 -------FRTMWERYCRGVSAILYVVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLG 121
F T+ E + A++ V+D+ +++ I E+L + +SG P+LV
Sbjct: 242 PQIVDAFFVTLSE--AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTL 299
Query: 122 NKIDK--SEALSKQALVDQLGLE 142
NKIDK + K LV++L E
Sbjct: 300 NKIDKINGDLYKKLDLVEKLSKE 322
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 67
Q ++ ++G GKT L+ + T + + IPTV N V V + LWD GQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 68 RRF 70
+
Sbjct: 62 EDY 64
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 67
Q ++ ++G GKT L+ + T + + IPTV N V V + LWD GQ
Sbjct: 9 QAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 68
Query: 68 RRF 70
+
Sbjct: 69 EDY 71
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 67
Q ++ ++G GKT L+ + T + + IPTV N V V + LWD GQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 68 RRF 70
+
Sbjct: 62 EDY 64
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 67
Q ++ ++G GKT L+ + T + + IPTV N V V + LWD GQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 68 RRF 70
+
Sbjct: 62 EDY 64
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of
The Vav1 Exchange Factor
Length = 184
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 67
Q ++ ++G GKT L+ + T + + IPTV N V V + LWD GQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 68 RRF 70
+
Sbjct: 62 EDY 64
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 67
Q ++ ++G GKT L+ + T + + IPTV N V V + LWD GQ
Sbjct: 6 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 65
Query: 68 RRF 70
+
Sbjct: 66 EDY 68
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 67
Q ++ ++G GKT L+ + T + + IPTV N V V + LWD GQ
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 68 RRF 70
+
Sbjct: 64 EDY 66
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 67
Q ++ ++G GKT L+ + T + + IPTV N V V + LWD GQ
Sbjct: 3 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 62
Query: 68 RRF 70
+
Sbjct: 63 EDY 65
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain
Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain
Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 67
Q ++ ++G GKT L+ + T + + IPTV N V V + LWD GQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 68 RRF 70
+
Sbjct: 62 EDY 64
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 20/128 (15%)
Query: 15 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVT--------------IK 60
++++G N GK++L+N + G I RK +G +T K
Sbjct: 10 VAIVGKPNVGKSTLLNNLL--GVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHK 67
Query: 61 LWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVL 120
D G+ + ++E V+A+++VVD P EL +KP + +P+L++
Sbjct: 68 PMDALGEFMDQEVYEALA-DVNAVVWVVDLR---HPPTPEDELVARALKPLVGKVPILLV 123
Query: 121 GNKIDKSE 128
GNK+D ++
Sbjct: 124 GNKLDAAK 131
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C
Beta 2
Length = 178
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 67
Q ++ ++G GKT L+ + T + + IPTV N V V + LWD GQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 68 RRF 70
+
Sbjct: 62 EDY 64
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of
Plexin-B1 In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of
Plexin-B1 In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of
Plexin-B1 In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 67
Q ++ ++G GKT L+ + T + + IPTV N V V + LWD GQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 68 RRF 70
+
Sbjct: 62 EDY 64
>pdb|2Q3F|A Chain A, X-Ray Crystal Structure Of Putative Human Ras-Related Gtp
Binding D In Complex With Gmppnp
pdb|2Q3F|B Chain B, X-Ray Crystal Structure Of Putative Human Ras-Related Gtp
Binding D In Complex With Gmppnp
Length = 181
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVT------IKLWDLGGQRRF 70
L GL+ +GK+S+ + + + N K+ + +V+ ++WD GQ F
Sbjct: 9 LXGLRRSGKSSIQKVVFHKXSPNETLFLESTN--KICREDVSNSSFVNFQIWDFPGQIDF 66
Query: 71 RTM---WERYCRGVSAILYVVDAADRDSVPIARSEL 103
+E RG A+++V+D+ D +AR L
Sbjct: 67 FDPTFDYEXIFRGTGALIFVIDSQDDYXEALARLHL 102
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 67
Q ++ ++G GKT L+ + T + + IPTV N V V + LWD GQ
Sbjct: 3 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 62
Query: 68 RRF 70
+
Sbjct: 63 EDY 65
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
Length = 272
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 16/135 (11%)
Query: 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTKGNVTIKLWDLGGQRRFRT 72
E++LIG N+GKTSL N I P V + + K N +++ DL G
Sbjct: 5 EIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSP 64
Query: 73 MWER--------YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 124
+ +IL VVDA + + ++L E +GIP+ + N I
Sbjct: 65 YSPEAKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIE-------TGIPVTIALNMI 117
Query: 125 DKSEALSKQALVDQL 139
D + K+ VD+L
Sbjct: 118 DVLDGQGKKINVDKL 132
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 67
Q ++ ++G GKT L+ + T + + IPTV N V V + LWD GQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 68 RRF 70
+
Sbjct: 62 EDY 64
>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
Length = 364
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 17/143 (11%)
Query: 15 LSLIGLQNAGKTSLVNTIA--TGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR--- 69
+ ++G N+GKTSL N++ T + T+ + N I L D R
Sbjct: 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVPFIRGIP 241
Query: 70 -------FRTMWERYCRGVSAILYVVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLG 121
F T+ E + A++ V+D+ +++ I E+L + +SG P+LV
Sbjct: 242 PQIVDAFFVTLSE--AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTL 299
Query: 122 NKIDK--SEALSKQALVDQLGLE 142
NKIDK + K LV++L E
Sbjct: 300 NKIDKINGDLYKKLDLVEKLSKE 322
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 67
Q ++ ++G GKT L+ + T + + IPTV N V V + LWD GQ
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 68 RRF 70
+
Sbjct: 64 EDY 66
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 67
Q ++ ++G GKT L+ + T + + IPTV N V V + LWD GQ
Sbjct: 21 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 80
Query: 68 RRF 70
+
Sbjct: 81 EDY 83
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQR 68
E +L ++G GK++L + + ++ PT+ + RK V G + + D GGQ
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTGGQE 62
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ M ++Y R L V + S ++ +P++++GNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 6 SLFFK-QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKL 61
+L+F+ Q ++ ++G GKT L+ + T + IPTV N V V + L
Sbjct: 23 NLYFQGQAIKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGL 82
Query: 62 WDLGGQRRF 70
WD GQ +
Sbjct: 83 WDTAGQEDY 91
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK---GNVTIKLWDLGG 66
K+ +++ ++G GKT L+ + G +PTV N V K + LWD G
Sbjct: 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAG 80
Query: 67 QRRF 70
Q +
Sbjct: 81 QEEY 84
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK---GNVTIKLWDLGG 66
K+ +++ ++G GKT L+ + G +PTV N V K + LWD G
Sbjct: 20 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAG 79
Query: 67 QRRF 70
Q +
Sbjct: 80 QEEY 83
>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 380
Score = 30.8 bits (68), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 44 TVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88
T G K V ++D+GGQR R W + V+AI++VV
Sbjct: 190 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVV 234
>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1TL7|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 402
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 44 TVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88
T G K V ++D+GGQR R W + V+AI++VV
Sbjct: 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVV 248
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|C Chain C, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|C Chain C, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3G82|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|C Chain C, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 394
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 44 TVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88
T G K V ++D+GGQR R W + V+AI++VV
Sbjct: 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVV 248
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 17/131 (12%)
Query: 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTI-----KLW 62
++ M++ + G NAGK+SL+N +A G ++ + R V + ++ I +
Sbjct: 3 LLREGMKVVIAGRPNAGKSSLLNALA--GREAAIVTDIAGTTRDVLREHIHIDGMPLHII 60
Query: 63 DLGGQRRFRTMWERY--------CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSG 114
D G R ER +L++VD D+V A E+ + +
Sbjct: 61 DTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA--EIWPEFIARLPAK 118
Query: 115 IPLLVLGNKID 125
+P+ V+ NK D
Sbjct: 119 LPITVVRNKAD 129
>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 380
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 44 TVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88
T G K V ++D+GGQR R W + V+AI++VV
Sbjct: 190 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVV 234
>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|3C14|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
Length = 402
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 44 TVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88
T G K V ++D+GGQR R W + V+AI++VV
Sbjct: 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVV 248
>pdb|3TAH|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
pdb|3TAH|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
Length = 272
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 16/135 (11%)
Query: 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTKGNVTIKLWDLGGQRRFR- 71
E++LIG +GKTSL N I P V + + K N +++ DL G
Sbjct: 5 EIALIGNPASGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSP 64
Query: 72 -TMWERYCRG------VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 124
+ E+ R +IL VVDA + + ++L E +GIP+ + N I
Sbjct: 65 YSPEEKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIE-------TGIPVTIALNMI 117
Query: 125 DKSEALSKQALVDQL 139
D + K+ VD+L
Sbjct: 118 DVLDGQGKKINVDKL 132
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 30.4 bits (67), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQR 68
E +L ++G GK++L + + ++ PT+ + RK V G + + + D GQ
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICLLDILDTAGQE 62
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ M ++Y R L V + S ++ +P++++GNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 30.0 bits (66), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 6 SLFFK-QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKL 61
+L+F+ Q ++ ++G GKT L+ + T + + IPTV N V V + L
Sbjct: 23 NLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGL 82
Query: 62 WDLGG 66
WD G
Sbjct: 83 WDTAG 87
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 30.0 bits (66), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 20/147 (13%)
Query: 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIK------LWDLGG- 66
++ L+G NAGK+SL+ + + I F G V + L D+ G
Sbjct: 159 DVGLVGYPNAGKSSLLAAMTR---AHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGI 215
Query: 67 ------QRRFRTMWERYCRGVSAILYVVDAADRD--SVPIARSELHELLMKPSLSGIPLL 118
+ + R+ +LYV+DAAD ++ R E+ P+L P L
Sbjct: 216 IEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVG--AYDPALLRRPSL 273
Query: 119 VLGNKIDKSEALSKQALVDQLGLESIT 145
V NK+D E + +AL D L E +
Sbjct: 274 VALNKVDLLEEEAVKALADALAREGLA 300
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 29.6 bits (65), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQR 68
E +L ++G GK++L + + ++ PT+ + RK V G + + D GQ
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ M ++Y R L V + S ++ +P++++GNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In
Complex With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In
Complex With Rac1 (T17n Mutant)
Length = 184
Score = 29.6 bits (65), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 67
Q ++ ++G GK L+ + T + + IPTV N V V + LWD GQ
Sbjct: 9 QAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 68
Query: 68 RRF 70
+
Sbjct: 69 EDY 71
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 29.6 bits (65), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 3/117 (2%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQR 68
E +L ++G GK++L + + E PT+ + RK V G + + D GQ
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ M ++Y R L V + S ++ +P++++GNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
pdb|4FID|B Chain B, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
Length = 340
Score = 29.6 bits (65), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 39 EDMI----PTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD 94
ED+I T G + ++ L D+GGQR R W + V ++V A+ D
Sbjct: 139 EDLIHNRTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYD 198
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQR 68
E +L ++G GK++L + + ++ PT+ + RK V G + + D GQ
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ M ++Y R L V + S ++ +P++++GNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQR 68
E +L ++G GK++L + + ++ PT+ + RK V G + + D GQ
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEESYRKQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ M ++Y R L V + S ++ +P++++GNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQR 68
E +L ++G GK++L + + ++ PT+ + RK V G + + D GQ
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ M ++Y R L V + S ++ +P++++GNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 9/127 (7%)
Query: 6 SLFFK--QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVT-IK 60
+L+F+ E +L ++G GK++L + + ++ PT+ + RK V G +
Sbjct: 13 NLYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLD 72
Query: 61 LWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMK--PSLSGIPLL 118
+ D GQ + M ++Y R L V A +S A L+ +K +P++
Sbjct: 73 ILDTAGQEEYSAMRDQYMRTGEGFLCVF--AINNSKSFADINLYREQIKRVKDSDDVPMV 130
Query: 119 VLGNKID 125
++GNK D
Sbjct: 131 LVGNKCD 137
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQR 68
E +L ++G GK++L + + ++ PT+ + RK V G + + D GQ
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ M ++Y R L V + S ++ +P++++GNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQR 68
E +L ++G GK++L + + ++ PT+ + RK V G + + D GQ
Sbjct: 3 EYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ M ++Y R L V + S ++ +P++++GNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 66/162 (40%), Gaps = 15/162 (9%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSE-DMIPTVGFNMRKVTKGNVTIKL--WDLGGQR 68
E+ L ++G +GK+SL++ TG Y + + + + G + L + G
Sbjct: 7 ELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD 66
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELH---ELLMKPSLSGIPLLVLGNKID 125
+ W A+++V D +S A S LH L G+ L ++G + D
Sbjct: 67 AKFSGW------ADAVIFVFSLEDENSFQ-AVSRLHGQLSSLRGEGRGGLALALVGTQ-D 118
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKD-SINIDAVI 166
+ A S + + D D + C Y +C +N+D V
Sbjct: 119 RISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVF 160
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQR 68
E +L ++G GK++L + + ++ PT+ + RK V G + + D GQ
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ M ++Y R L V + S ++ +P++++GNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQR 68
E +L ++G GK++L + + ++ PT+ + RK V G + + D GQ
Sbjct: 3 EYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ M ++Y R L V + S ++ +P++++GNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex
With Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGG 66
Q ++ ++G GKT L+ + T + + IPTV N V V + LWD G
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 60
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGG 66
Q ++ ++G GKT L+ + T + + IPTV N V V + LWD G
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 60
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQR 68
E +L ++G GK++L + + ++ PT+ + RK V G + + D GQ
Sbjct: 8 EYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 67
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ M ++Y R L V + S ++ +P++++GNK D
Sbjct: 68 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 124
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQR 68
E +L ++G GK++L + + ++ PT+ + RK V G + + D GQ
Sbjct: 8 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 67
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ M ++Y R L V + S ++ +P++++GNK D
Sbjct: 68 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 124
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 3/117 (2%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQR 68
E +L ++G GK +L + + ++ PT+ + RK V G + + D GQ
Sbjct: 3 EYKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ M ++Y R L V + S ++ +P++++GNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 3/117 (2%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQR 68
E +L ++G GK++L + + ++ PT+ + RK V G + + D GQ
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ M + Y R L V + S ++ +P++++GNK D
Sbjct: 63 EYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 17/126 (13%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTI-----KLWDLGGQ 67
M++ + G NAGK+SL+N +A G ++ + R V + ++ I + D G
Sbjct: 5 MKVVIAGRPNAGKSSLLNALA--GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGL 62
Query: 68 RRFRTMWERY--------CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLV 119
R ER +L++VD D+V A E+ + + +P+ V
Sbjct: 63 REASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA--EIWPEFIARLPAKLPITV 120
Query: 120 LGNKID 125
+ NK D
Sbjct: 121 VRNKAD 126
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 8/114 (7%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQRRFRT 72
++G GKT L+ + A + E+ +PTV F+ V+ + L+D GQ +
Sbjct: 23 VVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQEDYDR 81
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSE-LHELLMKPSLSGIPLLVLGNKID 125
+ L + S + E + EL K +P L++G +ID
Sbjct: 82 LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPEL--KEYAPNVPFLLIGTQID 133
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGG 66
Q ++ ++G GKT L+ + T + + IPTV N V V + LWD G
Sbjct: 5 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 63
>pdb|3T12|A Chain A, Mgla In Complex With Mglb In Transition State
pdb|3T1O|A Chain A, Mgla Bound To Gdp
pdb|3T1O|B Chain B, Mgla Bound To Gdp
pdb|3T1Q|A Chain A, Mgla Bound To Gppnhp In Complex With Mglb
Length = 198
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 61 LWDLGGQRRFRTMWERYCRGVSAILYVVDA------ADRDSVPIARSELHELLMKPSLSG 114
L+ + GQ + + RGV I++V D+ A+ +S+ R L E + +L
Sbjct: 78 LYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL--TLDD 135
Query: 115 IPLLVLGNKIDKSEALSKQ---ALVDQLG 140
+P+++ NK D +AL + A+VD G
Sbjct: 136 VPIVIQVNKRDLPDALPVEMVRAVVDPEG 164
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQR 68
E +L ++G GK++L + + ++ PT+ + RK V G + + D GQ
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ M ++Y R L V + S ++ +P++++GNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSD 119
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 6 SLFFKQ-----EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNV 57
+L+F+ E++L++ G GK++LV T + + PT+ R + V
Sbjct: 17 NLYFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVV 76
Query: 58 TIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVP--IARSELHELLMKPSLSGI 115
++++ D GQ E + R + V D DR S + + + + KP +
Sbjct: 77 SMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKP--KNV 133
Query: 116 PLLVLGNKID 125
L+++GNK D
Sbjct: 134 TLILVGNKAD 143
>pdb|3T1T|A Chain A, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|B Chain B, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|C Chain C, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|D Chain D, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1V|A Chain A, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|B Chain B, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|C Chain C, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|D Chain D, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
Length = 198
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 11/89 (12%)
Query: 61 LWDLGGQRRFRTMWERYCRGVSAILYVVDA------ADRDSVPIARSELHELLMKPSLSG 114
L+ + GQ + + RGV I++V D+ A+ +S R L E + +L
Sbjct: 78 LYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESXRNXRENLAEYGL--TLDD 135
Query: 115 IPLLVLGNKIDKSEALSKQ---ALVDQLG 140
+P+++ NK D +AL + A+VD G
Sbjct: 136 VPIVIQVNKRDLPDALPVEXVRAVVDPEG 164
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQR 68
E +L ++G GK++L + + ++ PT+ + RK V G + + D GQ
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ M ++Y R L V + S ++ +P++++GNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSD 119
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQR 68
E +L ++G GK++L + + ++ PT+ + RK V G + + D GQ
Sbjct: 10 EYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 69
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ M ++Y R L V + S ++ +P++++GNK D
Sbjct: 70 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 126
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQR 68
E +L ++G GK++L + + ++ PT+ + RK V G + + D GQ
Sbjct: 3 EYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTTGQE 62
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ M ++Y R L V + S ++ +P++++GNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 20/69 (28%)
Query: 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK------------GNVTIKL 61
+L L+G +GK+S+ +I YS F+ R++ GN+T+ L
Sbjct: 8 KLLLMGRSGSGKSSM-RSIIFSNYS-------AFDTRRLGATIDVEHSHLRFLGNMTLNL 59
Query: 62 WDLGGQRRF 70
WD GGQ F
Sbjct: 60 WDCGGQDVF 68
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQR 68
E +L ++G GK++L + + ++ PT+ + RK V G + + D GQ
Sbjct: 4 EYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 63
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ M ++Y R L V + S ++ +P++++GNK D
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSD 120
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQR 68
E +L ++G GK++L + + ++ PT+ + RK V G + + D GQ
Sbjct: 4 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 63
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ M ++Y R L V + S ++ +P++++GNK D
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSD 120
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 3/117 (2%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQR 68
E +L ++G GK++L + + + PT+ + RK V G + + D GQ
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ M ++Y R L V + S ++ +P++++GNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQR 68
E +L ++G GK++L + + ++ PT+ + RK V G + + D GQ
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ M ++Y R L V + S ++ +P++++GN+ D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCD 119
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 5/125 (4%)
Query: 6 SLFFK--QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVT-IK 60
+L+F+ E +L ++G GK++L + + ++ PT+ + RK V G +
Sbjct: 13 NLYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLD 72
Query: 61 LWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVL 120
+ D G + M ++Y R L V + S ++ +P++++
Sbjct: 73 ILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLV 132
Query: 121 GNKID 125
GNK D
Sbjct: 133 GNKCD 137
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQR 68
E +L ++G GK++L + + ++ P++ + RK V G + + D GQ
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ M ++Y R L V + S ++ +P++++GNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 51/118 (43%), Gaps = 12/118 (10%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDM---IPTVGFNMRK----VTKGNVTIKLWDLGGQRR 69
LIG Q GK++L N A G + M +G + + V + TI L D+ +
Sbjct: 42 LIGEQGVGKSTLANIFA--GVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG 99
Query: 70 FRTMWERYCRGV-SAILYVVDAADRDSVPIARSELH-ELLMKPSLSGIPLLVLGNKID 125
+C V A L V DR S A SEL +L IP++++GNK D
Sbjct: 100 ENEWLHDHCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSD 156
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 50/116 (43%), Gaps = 8/116 (6%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDM-IPTVGFNMRK----VTKGNVTIKLWDLGGQRRFR 71
LIG Q GK++L N A S D +G + + V + TI L D+ +
Sbjct: 11 LIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGEN 70
Query: 72 TMWERYCRGVS-AILYVVDAADRDSVPIARSELH-ELLMKPSLSGIPLLVLGNKID 125
+C V A L V DR S A SEL +L IP++++GNK D
Sbjct: 71 EWLHDHCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSD 125
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQR 68
E +L ++G GK++L + + ++ P++ + RK V G + + D GQ
Sbjct: 9 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQE 68
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ M ++Y R L V + S ++ +P++++GNK D
Sbjct: 69 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 125
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGG 66
K+ ++ ++G GKT L+ + T + + IPTV N V V + LWD G
Sbjct: 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 212
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 3/117 (2%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQR 68
E +L ++G GK++L + + ++ PT+ + RK V G + + D G
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHE 62
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ M ++Y R L V + S ++ +P++++GNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQR 68
E +L ++G GK++L + + ++ PT+ + RK V G + + D G+
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGKE 62
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ M ++Y R L V + S ++ +P++++GNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|1EP1|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B
pdb|1EP2|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B Complexed With Orotate
pdb|1EP3|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B. Data Collected Under Cryogenic
Conditions
Length = 311
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 34 TGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAI-LYVVDAAD 92
TGG S I V + +V I + +GG + + E Y G SA+ + + AD
Sbjct: 217 TGGLSGPAIKPVALKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFAD 276
Query: 93 RDSVPIARSELHELL 107
P +L EL+
Sbjct: 277 PFVCPKIIDKLPELM 291
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGG 66
K+ ++ ++G GKT L+ + T + + IPTV N V V + LWD G
Sbjct: 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 212
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGG 66
K+ ++ ++G GKT L+ + T + + IPTV N V V + LWD G
Sbjct: 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 212
>pdb|3RMT|A Chain A, Crystal Structure Of Putative
5-Enolpyruvoylshikimate-3-Phosphate Synthase From
Bacillus Halodurans C-125
pdb|3RMT|B Chain B, Crystal Structure Of Putative
5-Enolpyruvoylshikimate-3-Phosphate Synthase From
Bacillus Halodurans C-125
pdb|3RMT|C Chain C, Crystal Structure Of Putative
5-Enolpyruvoylshikimate-3-Phosphate Synthase From
Bacillus Halodurans C-125
pdb|3RMT|D Chain D, Crystal Structure Of Putative
5-Enolpyruvoylshikimate-3-Phosphate Synthase From
Bacillus Halodurans C-125
Length = 455
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWER 76
L GL+ GKTS+ T ++E M+ G N + K +T+ + GGQ T
Sbjct: 179 LAGLRAEGKTSVTEPAKTRDHTERMLEAFGVN---IEKDGLTVSIE--GGQ--MLTGQHV 231
Query: 77 YCRG--VSAILYVVDAADRDSVPIARSELHELLMKPSLSGI 115
G SA ++V A VP +R L + + P+ +GI
Sbjct: 232 VVPGDISSAAFFLVAGA---MVPHSRITLTNVGINPTRAGI 269
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 50/116 (43%), Gaps = 8/116 (6%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTV-GFNMRK----VTKGNVTIKLWDLGGQRRFR 71
LIG Q GK++L N A S D V G + + V + TI L D+ +
Sbjct: 11 LIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGEN 70
Query: 72 TMWERYCRGV-SAILYVVDAADRDSVPIARSELH-ELLMKPSLSGIPLLVLGNKID 125
+C V A L V DR S A SEL +L IP++++GNK D
Sbjct: 71 EWLHDHCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSD 125
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 3/117 (2%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQR 68
E +L ++G GK++L + + ++ PT+ + RK V G + + D GQ
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
M ++Y R L V + S ++ +P++++GNK D
Sbjct: 63 EASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 3/117 (2%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQR 68
E +L ++G GK++L + + ++ PT+ + RK V G + + D Q
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQE 62
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ M ++Y R L V + S ++ +P++++GNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXD 119
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 3/117 (2%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQR 68
E +L ++G GK++L + + ++ PT+ + RK V G + + D Q
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQE 62
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ M ++Y R L V + S ++ +P++++GNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXD 119
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 72/174 (41%), Gaps = 27/174 (15%)
Query: 15 LSLIGLQNAGKTSLVNTIA---------TGGYSEDMIPT----VGFNMRKVTKGNVTIKL 61
++++G N GK+++ N IA T G + D I + + ++ + G + I
Sbjct: 26 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 85
Query: 62 WDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLG 121
Q R E I+++V+ R+ V A E+ ++L + + P+++
Sbjct: 86 EPFLAQ--IRQQAEIAMDEADVIIFMVNG--REGVTAADEEVAKILYR---TKKPVVLAV 138
Query: 122 NKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 175
NK+D +E + LG Y IS + + ++D + +H K
Sbjct: 139 NKLDNTEMRANIYDFYSLGFGE-------PYPISGTHGLGLGDLLDAVAEHFKN 185
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 17/122 (13%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTI-----KLWDLGGQRRFR 71
+ G NAGK+SL+N +A G ++ + R V + ++ I + D G R
Sbjct: 9 IAGRPNAGKSSLLNALA--GREAAIVTDIAGTTRDVLREHIHIDGXPLHIIDTAGLREAS 66
Query: 72 TMWERY--------CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNK 123
ER +L+ VD D+V A E+ + + +P+ V+ NK
Sbjct: 67 DEVERIGIERAWQEIEQADRVLFXVDGTTTDAVDPA--EIWPEFIARLPAKLPITVVRNK 124
Query: 124 ID 125
D
Sbjct: 125 AD 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,827,008
Number of Sequences: 62578
Number of extensions: 180339
Number of successful extensions: 1167
Number of sequences better than 100.0: 384
Number of HSP's better than 100.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 156
Number of HSP's that attempted gapping in prelim test: 747
Number of HSP's gapped (non-prelim): 389
length of query: 177
length of database: 14,973,337
effective HSP length: 92
effective length of query: 85
effective length of database: 9,216,161
effective search space: 783373685
effective search space used: 783373685
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)