Query 030429
Match_columns 177
No_of_seqs 131 out of 1342
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 13:35:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030429.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030429hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 3.2E-37 6.8E-42 203.4 13.2 161 7-176 4-174 (205)
2 PLN00223 ADP-ribosylation fact 100.0 1.6E-35 3.5E-40 201.7 20.2 167 9-176 14-180 (181)
3 smart00177 ARF ARF-like small 100.0 2.3E-35 5E-40 200.2 19.5 165 9-174 10-174 (175)
4 cd04149 Arf6 Arf6 subfamily. 100.0 3.2E-35 7E-40 198.2 19.5 162 9-171 6-167 (168)
5 PTZ00133 ADP-ribosylation fact 100.0 3.8E-35 8.2E-40 200.1 19.9 168 7-175 12-179 (182)
6 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 6.9E-36 1.5E-40 196.6 14.8 163 10-175 20-186 (221)
7 cd04150 Arf1_5_like Arf1-Arf5- 100.0 6.7E-35 1.5E-39 195.0 19.1 158 13-171 1-158 (159)
8 KOG0092 GTPase Rab5/YPT51 and 100.0 3E-36 6.5E-41 198.1 12.0 161 10-176 3-169 (200)
9 cd04158 ARD1 ARD1 subfamily. 100.0 1.5E-33 3.3E-38 190.3 19.6 161 14-175 1-162 (169)
10 cd04120 Rab12 Rab12 subfamily. 100.0 3.6E-34 7.9E-39 197.5 16.3 159 13-175 1-164 (202)
11 cd04121 Rab40 Rab40 subfamily. 100.0 2.3E-34 5.1E-39 196.7 14.9 159 10-175 4-168 (189)
12 KOG0394 Ras-related GTPase [Ge 100.0 3.7E-35 8E-40 191.3 10.1 168 8-175 5-179 (210)
13 cd04154 Arl2 Arl2 subfamily. 100.0 2.2E-33 4.7E-38 190.2 19.1 161 10-171 12-172 (173)
14 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 3.3E-34 7.3E-39 193.9 14.6 159 12-175 2-165 (172)
15 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 2.7E-33 5.8E-38 189.9 19.1 161 10-171 13-173 (174)
16 KOG0078 GTP-binding protein SE 100.0 2.8E-34 6.1E-39 191.9 13.7 164 8-176 8-176 (207)
17 cd04157 Arl6 Arl6 subfamily. 100.0 4.1E-33 9E-38 186.8 18.9 158 14-171 1-161 (162)
18 cd04151 Arl1 Arl1 subfamily. 100.0 8.4E-33 1.8E-37 184.7 18.6 157 14-171 1-157 (158)
19 cd04133 Rop_like Rop subfamily 100.0 3.4E-33 7.4E-38 189.1 15.7 157 13-176 2-175 (176)
20 cd01875 RhoG RhoG subfamily. 100.0 5.7E-33 1.2E-37 190.8 16.8 162 12-175 3-178 (191)
21 cd04127 Rab27A Rab27a subfamil 100.0 4E-33 8.6E-38 190.0 15.8 160 11-175 3-178 (180)
22 KOG0080 GTPase Rab18, small G 100.0 6E-34 1.3E-38 181.8 10.8 165 9-176 8-176 (209)
23 cd00877 Ran Ran (Ras-related n 100.0 7.8E-33 1.7E-37 186.3 16.9 157 13-176 1-161 (166)
24 cd04161 Arl2l1_Arl13_like Arl2 100.0 2.8E-32 6E-37 183.7 19.2 157 14-171 1-166 (167)
25 PF00025 Arf: ADP-ribosylation 100.0 9.6E-33 2.1E-37 187.1 17.0 164 9-173 11-175 (175)
26 KOG0098 GTPase Rab2, small G p 100.0 1.2E-33 2.5E-38 184.7 11.9 156 10-174 4-168 (216)
27 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 8.8E-33 1.9E-37 188.1 16.8 164 10-175 3-181 (182)
28 cd04128 Spg1 Spg1p. Spg1p (se 100.0 9.3E-33 2E-37 188.3 16.8 161 13-176 1-168 (182)
29 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 1.7E-32 3.7E-37 184.2 17.8 155 15-171 2-163 (164)
30 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 1.5E-32 3.3E-37 190.2 18.1 159 13-175 1-169 (201)
31 cd04122 Rab14 Rab14 subfamily. 100.0 4.2E-33 9.2E-38 187.6 14.8 158 12-175 2-165 (166)
32 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 3.6E-32 7.8E-37 185.7 19.4 164 11-175 2-171 (183)
33 KOG0075 GTP-binding ADP-ribosy 100.0 3.1E-33 6.7E-38 176.0 12.8 170 7-176 15-184 (186)
34 smart00178 SAR Sar1p-like memb 100.0 4.2E-32 9.2E-37 185.5 19.5 162 10-172 15-183 (184)
35 cd04126 Rab20 Rab20 subfamily. 100.0 2.7E-32 5.9E-37 190.2 18.5 160 13-174 1-190 (220)
36 cd04136 Rap_like Rap-like subf 100.0 4.4E-33 9.4E-38 186.8 14.0 158 12-173 1-162 (163)
37 cd00878 Arf_Arl Arf (ADP-ribos 100.0 5.9E-32 1.3E-36 180.6 18.9 157 14-171 1-157 (158)
38 cd04175 Rap1 Rap1 subgroup. T 100.0 2.1E-32 4.6E-37 183.8 16.7 158 12-174 1-163 (164)
39 cd01874 Cdc42 Cdc42 subfamily. 100.0 2E-32 4.4E-37 185.6 16.7 159 13-173 2-174 (175)
40 PTZ00369 Ras-like protein; Pro 100.0 5.9E-33 1.3E-37 190.5 14.1 160 11-175 4-168 (189)
41 cd00879 Sar1 Sar1 subfamily. 100.0 9.7E-32 2.1E-36 184.7 20.2 163 10-173 17-190 (190)
42 cd04131 Rnd Rnd subfamily. Th 100.0 1.9E-32 4.1E-37 186.0 16.3 161 12-174 1-176 (178)
43 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1.3E-32 2.9E-37 185.7 15.4 159 14-176 2-167 (170)
44 cd04160 Arfrp1 Arfrp1 subfamil 100.0 8.6E-32 1.9E-36 181.3 18.3 158 14-171 1-166 (167)
45 PLN03071 GTP-binding nuclear p 100.0 3.7E-32 8E-37 190.3 17.0 159 10-175 11-173 (219)
46 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 5.6E-32 1.2E-36 189.6 17.8 168 6-175 7-189 (232)
47 cd01865 Rab3 Rab3 subfamily. 100.0 1.1E-31 2.4E-36 180.5 18.3 157 13-175 2-164 (165)
48 cd04119 RJL RJL (RabJ-Like) su 100.0 6.4E-32 1.4E-36 181.8 17.1 157 13-174 1-167 (168)
49 cd04159 Arl10_like Arl10-like 100.0 2.1E-31 4.5E-36 177.5 19.3 157 15-171 2-158 (159)
50 cd04138 H_N_K_Ras_like H-Ras/N 100.0 4.5E-32 9.7E-37 181.6 16.2 156 13-173 2-161 (162)
51 cd04156 ARLTS1 ARLTS1 subfamil 100.0 1.2E-31 2.5E-36 179.5 18.1 157 14-171 1-159 (160)
52 cd01867 Rab8_Rab10_Rab13_like 100.0 9.2E-32 2E-36 181.2 17.5 159 11-175 2-166 (167)
53 cd04117 Rab15 Rab15 subfamily. 100.0 4.1E-32 8.8E-37 181.9 15.4 155 13-172 1-160 (161)
54 cd04109 Rab28 Rab28 subfamily. 100.0 4.2E-32 9.1E-37 189.7 15.7 159 13-175 1-167 (215)
55 cd04144 Ras2 Ras2 subfamily. 100.0 1.3E-32 2.8E-37 189.0 12.9 158 14-176 1-165 (190)
56 smart00173 RAS Ras subfamily o 100.0 3E-32 6.5E-37 183.0 14.2 158 13-175 1-163 (164)
57 cd04124 RabL2 RabL2 subfamily. 100.0 1.2E-31 2.5E-36 179.7 16.9 157 13-177 1-161 (161)
58 cd04145 M_R_Ras_like M-Ras/R-R 100.0 3E-32 6.6E-37 182.9 14.1 157 12-173 2-163 (164)
59 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 4.5E-32 9.8E-37 182.5 14.6 158 12-175 2-165 (166)
60 cd04140 ARHI_like ARHI subfami 100.0 2.6E-32 5.6E-37 183.6 13.3 157 13-173 2-164 (165)
61 cd04176 Rap2 Rap2 subgroup. T 100.0 2.8E-32 6.1E-37 183.0 13.1 158 12-173 1-162 (163)
62 cd01864 Rab19 Rab19 subfamily. 100.0 4.3E-31 9.3E-36 177.6 18.7 158 11-173 2-165 (165)
63 cd01871 Rac1_like Rac1-like su 100.0 1.4E-31 3E-36 181.4 16.3 158 13-172 2-173 (174)
64 cd04155 Arl3 Arl3 subfamily. 100.0 6.4E-31 1.4E-35 178.0 19.2 163 8-171 10-172 (173)
65 cd04111 Rab39 Rab39 subfamily. 100.0 7E-32 1.5E-36 187.9 14.8 159 12-175 2-167 (211)
66 cd04103 Centaurin_gamma Centau 100.0 8.5E-32 1.8E-36 179.6 14.6 152 13-172 1-157 (158)
67 KOG0070 GTP-binding ADP-ribosy 100.0 7.6E-32 1.7E-36 176.7 13.9 171 6-177 11-181 (181)
68 cd04110 Rab35 Rab35 subfamily. 100.0 1.1E-31 2.3E-36 185.7 15.5 159 10-175 4-168 (199)
69 KOG0095 GTPase Rab30, small G 100.0 4.9E-32 1.1E-36 171.3 11.6 161 10-174 5-169 (213)
70 cd04116 Rab9 Rab9 subfamily. 100.0 4.2E-31 9.2E-36 178.5 17.1 159 10-172 3-169 (170)
71 KOG0073 GTP-binding ADP-ribosy 100.0 6.5E-31 1.4E-35 168.4 16.7 166 9-175 13-179 (185)
72 PLN03110 Rab GTPase; Provision 100.0 2E-31 4.3E-36 186.3 15.5 163 8-175 8-175 (216)
73 cd04134 Rho3 Rho3 subfamily. 100.0 1.2E-31 2.5E-36 184.1 14.0 161 13-175 1-175 (189)
74 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 4.7E-31 1E-35 184.1 16.8 162 13-175 2-177 (222)
75 cd04115 Rab33B_Rab33A Rab33B/R 100.0 2.3E-31 5E-36 179.8 14.4 159 12-174 2-169 (170)
76 cd04112 Rab26 Rab26 subfamily. 100.0 8.3E-31 1.8E-35 180.2 17.2 158 13-176 1-165 (191)
77 cd04106 Rab23_lke Rab23-like s 100.0 1.3E-30 2.7E-35 174.7 17.5 153 13-172 1-161 (162)
78 cd01866 Rab2 Rab2 subfamily. 100.0 4E-31 8.7E-36 178.3 14.9 158 12-175 4-167 (168)
79 cd04125 RabA_like RabA-like su 100.0 3.2E-31 7E-36 181.8 14.6 157 13-175 1-163 (188)
80 cd04132 Rho4_like Rho4-like su 100.0 1.3E-30 2.9E-35 178.6 17.4 157 13-175 1-168 (187)
81 KOG0087 GTPase Rab11/YPT3, sma 100.0 1.5E-31 3.3E-36 178.3 12.0 161 6-175 8-177 (222)
82 KOG0093 GTPase Rab3, small G p 100.0 4.7E-31 1E-35 166.3 13.5 158 10-176 19-185 (193)
83 cd01868 Rab11_like Rab11-like. 100.0 4.7E-31 1E-35 177.4 14.5 156 12-173 3-164 (165)
84 cd04143 Rhes_like Rhes_like su 100.0 3.3E-30 7.1E-35 182.9 19.1 157 13-173 1-170 (247)
85 cd01892 Miro2 Miro2 subfamily. 100.0 2.2E-30 4.8E-35 174.8 17.4 157 10-176 2-168 (169)
86 cd04113 Rab4 Rab4 subfamily. 100.0 4.5E-31 9.8E-36 176.8 13.6 155 13-173 1-161 (161)
87 smart00176 RAN Ran (Ras-relate 100.0 1.5E-30 3.2E-35 179.3 16.3 151 18-175 1-155 (200)
88 KOG0086 GTPase Rab4, small G p 100.0 7.1E-31 1.5E-35 166.6 13.2 161 9-175 6-172 (214)
89 cd01861 Rab6 Rab6 subfamily. 100.0 9.5E-31 2.1E-35 175.2 14.5 156 13-173 1-161 (161)
90 cd04101 RabL4 RabL4 (Rab-like4 100.0 1.3E-30 2.8E-35 175.0 15.2 155 13-173 1-163 (164)
91 cd01860 Rab5_related Rab5-rela 100.0 3.6E-30 7.7E-35 172.7 17.3 156 12-173 1-162 (163)
92 smart00175 RAB Rab subfamily o 100.0 1.8E-30 3.9E-35 174.2 15.7 157 13-175 1-163 (164)
93 cd04142 RRP22 RRP22 subfamily. 100.0 1.2E-30 2.7E-35 179.8 15.2 160 13-175 1-175 (198)
94 cd01862 Rab7 Rab7 subfamily. 100.0 8.8E-30 1.9E-34 172.2 18.6 160 13-176 1-169 (172)
95 KOG0079 GTP-binding protein H- 100.0 9.5E-32 2.1E-36 169.6 8.2 159 12-175 8-170 (198)
96 cd01863 Rab18 Rab18 subfamily. 100.0 4.6E-30 9.9E-35 171.9 16.7 155 13-172 1-160 (161)
97 cd01893 Miro1 Miro1 subfamily. 100.0 3.5E-30 7.5E-35 173.4 15.7 160 13-175 1-165 (166)
98 cd04177 RSR1 RSR1 subgroup. R 100.0 1.4E-30 3E-35 175.7 13.4 158 12-173 1-163 (168)
99 cd04118 Rab24 Rab24 subfamily. 100.0 2.2E-30 4.7E-35 178.4 14.4 156 13-175 1-167 (193)
100 PLN03108 Rab family protein; P 100.0 3.2E-30 7E-35 179.5 15.1 160 10-175 4-169 (210)
101 cd04139 RalA_RalB RalA/RalB su 100.0 1.1E-29 2.3E-34 170.4 16.9 158 13-175 1-163 (164)
102 smart00174 RHO Rho (Ras homolo 100.0 3.7E-30 8.1E-35 174.4 14.6 159 15-175 1-173 (174)
103 PF00071 Ras: Ras family; Int 100.0 9.3E-30 2E-34 170.6 16.3 155 14-174 1-161 (162)
104 PLN03118 Rab family protein; P 100.0 6E-30 1.3E-34 178.4 15.3 161 9-175 11-178 (211)
105 cd04135 Tc10 TC10 subfamily. 100.0 9.7E-30 2.1E-34 172.4 15.4 160 13-173 1-173 (174)
106 cd04148 RGK RGK subfamily. Th 100.0 4.5E-30 9.8E-35 180.0 14.0 155 13-174 1-163 (221)
107 cd04147 Ras_dva Ras-dva subfam 100.0 1.8E-29 3.9E-34 174.5 16.5 157 14-174 1-163 (198)
108 cd04146 RERG_RasL11_like RERG/ 100.0 2.4E-30 5.3E-35 174.0 11.8 156 14-174 1-164 (165)
109 KOG0071 GTP-binding ADP-ribosy 100.0 2.8E-29 6.2E-34 157.0 15.3 169 6-175 11-179 (180)
110 cd04123 Rab21 Rab21 subfamily. 100.0 8.4E-30 1.8E-34 170.5 14.1 155 13-173 1-161 (162)
111 cd04114 Rab30 Rab30 subfamily. 100.0 3.4E-29 7.3E-34 169.0 16.2 159 10-173 5-168 (169)
112 KOG0088 GTPase Rab21, small G 100.0 7.1E-31 1.5E-35 167.5 7.1 164 8-175 9-176 (218)
113 cd01870 RhoA_like RhoA-like su 100.0 2.6E-29 5.7E-34 170.4 15.1 159 13-173 2-174 (175)
114 cd04130 Wrch_1 Wrch-1 subfamil 100.0 4.5E-30 9.9E-35 173.9 11.2 153 13-171 1-171 (173)
115 KOG0091 GTPase Rab39, small G 100.0 1.1E-29 2.5E-34 162.7 11.2 162 10-174 6-173 (213)
116 cd00154 Rab Rab family. Rab G 100.0 1.5E-28 3.3E-33 163.6 17.1 152 13-170 1-158 (159)
117 cd01873 RhoBTB RhoBTB subfamil 100.0 1.1E-29 2.3E-34 174.7 11.7 157 12-172 2-194 (195)
118 cd04137 RheB Rheb (Ras Homolog 100.0 1.4E-28 3E-33 167.6 17.0 159 13-176 2-165 (180)
119 cd00876 Ras Ras family. The R 100.0 1.6E-28 3.4E-33 164.0 16.1 155 14-173 1-160 (160)
120 cd00157 Rho Rho (Ras homology) 100.0 8.9E-29 1.9E-33 167.1 13.3 158 13-171 1-170 (171)
121 PTZ00132 GTP-binding nuclear p 100.0 1E-27 2.2E-32 167.7 18.0 161 9-176 6-170 (215)
122 cd04129 Rho2 Rho2 subfamily. 100.0 8.5E-28 1.8E-32 164.7 15.0 157 13-175 2-174 (187)
123 KOG0081 GTPase Rab27, small G 100.0 1.1E-29 2.4E-34 162.2 4.2 156 11-174 8-181 (219)
124 cd01897 NOG NOG1 is a nucleola 100.0 4.6E-27 1E-31 158.4 16.7 153 14-173 2-167 (168)
125 cd01898 Obg Obg subfamily. Th 100.0 6.1E-27 1.3E-31 158.0 16.6 157 14-173 2-170 (170)
126 cd04102 RabL3 RabL3 (Rab-like3 100.0 6.4E-27 1.4E-31 161.2 15.2 117 13-129 1-144 (202)
127 cd04171 SelB SelB subfamily. 100.0 1.6E-26 3.5E-31 154.9 16.4 153 13-171 1-163 (164)
128 KOG0395 Ras-related GTPase [Ge 99.9 2.4E-27 5.1E-32 162.3 11.6 160 11-175 2-166 (196)
129 PRK12299 obgE GTPase CgtA; Rev 99.9 2.4E-26 5.2E-31 169.0 17.6 169 4-176 150-330 (335)
130 KOG0083 GTPase Rab26/Rab37, sm 99.9 1.4E-28 3E-33 152.9 4.8 151 17-176 2-162 (192)
131 cd01878 HflX HflX subfamily. 99.9 4.9E-26 1.1E-30 158.0 16.5 154 10-173 39-204 (204)
132 cd01890 LepA LepA subfamily. 99.9 5.6E-26 1.2E-30 154.6 15.7 151 14-174 2-177 (179)
133 PRK15494 era GTPase Era; Provi 99.9 1.4E-25 3E-30 165.9 18.5 158 10-176 50-218 (339)
134 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 1.5E-25 3.2E-30 150.9 17.0 156 14-175 2-167 (168)
135 PRK03003 GTP-binding protein D 99.9 3.1E-25 6.8E-30 170.8 19.5 161 10-175 209-383 (472)
136 TIGR00436 era GTP-binding prot 99.9 2.8E-25 6.2E-30 160.1 17.6 154 14-176 2-166 (270)
137 TIGR00231 small_GTP small GTP- 99.9 2.5E-25 5.4E-30 147.9 15.9 154 12-170 1-160 (161)
138 PRK04213 GTP-binding protein; 99.9 3.9E-26 8.4E-31 158.2 12.4 162 9-176 6-194 (201)
139 KOG0076 GTP-binding ADP-ribosy 99.9 1.4E-26 3.1E-31 149.9 8.6 171 6-176 11-189 (197)
140 TIGR02729 Obg_CgtA Obg family 99.9 4.5E-25 9.8E-30 162.2 17.6 166 4-173 149-328 (329)
141 KOG0097 GTPase Rab14, small G 99.9 1.2E-25 2.6E-30 141.3 12.3 160 8-173 7-172 (215)
142 KOG0072 GTP-binding ADP-ribosy 99.9 1.5E-26 3.3E-31 145.4 8.0 171 6-177 11-182 (182)
143 cd00881 GTP_translation_factor 99.9 1.1E-24 2.5E-29 149.1 17.4 156 14-174 1-187 (189)
144 TIGR03156 GTP_HflX GTP-binding 99.9 9.4E-25 2E-29 161.8 17.2 151 11-172 188-350 (351)
145 cd01891 TypA_BipA TypA (tyrosi 99.9 1.5E-24 3.2E-29 149.5 17.0 148 13-165 3-173 (194)
146 KOG0074 GTP-binding ADP-ribosy 99.9 1.5E-25 3.3E-30 140.5 10.8 165 9-174 14-179 (185)
147 TIGR02528 EutP ethanolamine ut 99.9 2.6E-25 5.6E-30 146.0 12.4 134 14-170 2-141 (142)
148 cd04164 trmE TrmE (MnmE, ThdF, 99.9 2.4E-24 5.2E-29 143.3 17.3 144 13-173 2-156 (157)
149 PLN00023 GTP-binding protein; 99.9 8.9E-25 1.9E-29 157.8 16.0 123 7-129 16-166 (334)
150 cd01889 SelB_euk SelB subfamil 99.9 8.3E-25 1.8E-29 150.5 15.1 157 13-174 1-186 (192)
151 cd01881 Obg_like The Obg-like 99.9 3.6E-25 7.7E-30 150.1 12.9 153 17-172 1-175 (176)
152 PRK05291 trmE tRNA modificatio 99.9 1.3E-24 2.9E-29 166.0 17.1 147 10-174 213-370 (449)
153 TIGR03594 GTPase_EngA ribosome 99.9 1.7E-24 3.7E-29 165.6 17.6 160 10-174 170-344 (429)
154 cd00882 Ras_like_GTPase Ras-li 99.9 8.5E-25 1.9E-29 144.1 13.1 151 17-170 1-156 (157)
155 TIGR00450 mnmE_trmE_thdF tRNA 99.9 4.3E-24 9.4E-29 162.4 18.6 151 9-175 200-361 (442)
156 PF02421 FeoB_N: Ferrous iron 99.9 2.8E-24 6E-29 141.1 15.2 142 13-169 1-156 (156)
157 cd01895 EngA2 EngA2 subfamily. 99.9 9E-24 1.9E-28 142.6 18.1 156 12-172 2-173 (174)
158 cd01879 FeoB Ferrous iron tran 99.9 1.7E-24 3.6E-29 144.3 14.3 147 17-174 1-157 (158)
159 PRK03003 GTP-binding protein D 99.9 5.2E-24 1.1E-28 164.1 18.9 154 10-175 36-200 (472)
160 PF00009 GTP_EFTU: Elongation 99.9 3.4E-24 7.3E-29 147.0 16.0 159 10-174 1-187 (188)
161 PRK12296 obgE GTPase CgtA; Rev 99.9 3.9E-24 8.4E-29 163.1 17.8 168 4-176 151-342 (500)
162 cd01894 EngA1 EngA1 subfamily. 99.9 4.6E-24 9.9E-29 142.0 15.7 146 16-173 1-157 (157)
163 PRK12297 obgE GTPase CgtA; Rev 99.9 1.2E-23 2.6E-28 158.4 19.2 165 4-176 150-329 (424)
164 COG1100 GTPase SAR1 and relate 99.9 7.1E-24 1.5E-28 148.7 16.8 162 12-174 5-185 (219)
165 cd01888 eIF2_gamma eIF2-gamma 99.9 3.1E-24 6.8E-29 148.7 14.7 160 13-175 1-200 (203)
166 PRK00454 engB GTP-binding prot 99.9 1.3E-23 2.7E-28 145.0 16.3 162 8-175 20-195 (196)
167 KOG0393 Ras-related small GTPa 99.9 4.4E-25 9.5E-30 148.4 8.1 163 11-175 3-180 (198)
168 PRK15467 ethanolamine utilizat 99.9 1.1E-23 2.3E-28 140.5 14.3 142 14-175 3-148 (158)
169 cd04105 SR_beta Signal recogni 99.9 1.7E-23 3.6E-28 144.9 14.9 157 14-171 2-202 (203)
170 KOG4252 GTP-binding protein [S 99.9 1.9E-25 4.2E-30 145.6 4.7 156 10-175 18-182 (246)
171 PRK09518 bifunctional cytidyla 99.9 4.8E-23 1E-27 165.4 19.0 161 10-175 448-622 (712)
172 PRK00089 era GTPase Era; Revie 99.9 7.1E-23 1.5E-27 149.4 17.7 157 11-175 4-172 (292)
173 PRK12298 obgE GTPase CgtA; Rev 99.9 7.3E-23 1.6E-27 153.4 17.9 170 5-176 152-335 (390)
174 COG1159 Era GTPase [General fu 99.9 5.4E-23 1.2E-27 145.0 15.9 158 11-176 5-174 (298)
175 PTZ00099 rab6; Provisional 99.9 7.4E-24 1.6E-28 143.5 11.1 136 35-176 3-144 (176)
176 PRK00093 GTP-binding protein D 99.9 8.4E-23 1.8E-27 156.5 18.3 160 10-174 171-344 (435)
177 PRK11058 GTPase HflX; Provisio 99.9 1E-22 2.2E-27 154.2 18.1 153 13-174 198-362 (426)
178 cd04163 Era Era subfamily. Er 99.9 1.4E-22 3E-27 135.8 16.7 154 12-173 3-168 (168)
179 TIGR03598 GTPase_YsxC ribosome 99.9 1E-22 2.2E-27 138.7 14.4 149 6-163 12-179 (179)
180 TIGR03594 GTPase_EngA ribosome 99.9 2E-22 4.4E-27 154.2 17.7 149 14-174 1-160 (429)
181 TIGR00487 IF-2 translation ini 99.9 2.2E-22 4.7E-27 157.4 17.7 157 9-171 84-247 (587)
182 TIGR00475 selB selenocysteine- 99.9 1.8E-22 3.9E-27 158.4 17.1 158 13-175 1-167 (581)
183 cd00880 Era_like Era (E. coli 99.9 2.1E-22 4.5E-27 133.9 15.1 152 17-173 1-163 (163)
184 TIGR01393 lepA GTP-binding pro 99.9 2.6E-22 5.7E-27 157.6 17.6 156 12-174 3-180 (595)
185 PRK00093 GTP-binding protein D 99.9 3.1E-22 6.7E-27 153.4 17.6 148 13-172 2-160 (435)
186 PRK05306 infB translation init 99.9 3.6E-22 7.9E-27 159.7 18.0 158 9-172 287-450 (787)
187 PF08477 Miro: Miro-like prote 99.9 1.2E-23 2.6E-28 134.0 7.1 110 14-125 1-119 (119)
188 COG1160 Predicted GTPases [Gen 99.9 4.8E-22 1E-26 147.4 16.4 159 11-174 177-351 (444)
189 CHL00189 infB translation init 99.9 1.3E-21 2.8E-26 155.4 19.0 159 9-173 241-409 (742)
190 COG1160 Predicted GTPases [Gen 99.9 5.2E-22 1.1E-26 147.2 15.4 149 13-173 4-164 (444)
191 PRK09518 bifunctional cytidyla 99.9 1.1E-21 2.3E-26 157.7 17.9 157 7-175 270-437 (712)
192 KOG1673 Ras GTPases [General f 99.9 4.2E-23 9.2E-28 131.6 7.7 162 12-175 20-187 (205)
193 cd01896 DRG The developmentall 99.9 1.7E-21 3.7E-26 137.4 16.1 151 14-174 2-226 (233)
194 PRK12317 elongation factor 1-a 99.9 6.3E-22 1.4E-26 151.1 15.0 155 9-165 3-196 (425)
195 COG0486 ThdF Predicted GTPase 99.9 1.7E-21 3.7E-26 144.9 16.5 153 8-174 213-376 (454)
196 cd04166 CysN_ATPS CysN_ATPS su 99.9 1.1E-21 2.4E-26 136.5 13.9 148 14-165 1-185 (208)
197 TIGR00483 EF-1_alpha translati 99.9 5.2E-22 1.1E-26 151.5 13.4 154 9-164 4-197 (426)
198 cd01884 EF_Tu EF-Tu subfamily. 99.9 2.3E-21 5E-26 133.1 15.2 146 12-162 2-171 (195)
199 cd01883 EF1_alpha Eukaryotic e 99.9 1.4E-21 2.9E-26 137.0 13.1 147 14-163 1-194 (219)
200 TIGR03680 eif2g_arch translati 99.9 2E-21 4.4E-26 147.2 14.8 162 10-174 2-196 (406)
201 PRK05433 GTP-binding protein L 99.9 6.2E-21 1.3E-25 150.0 17.7 157 11-174 6-184 (600)
202 cd04168 TetM_like Tet(M)-like 99.9 7.1E-21 1.5E-25 134.5 16.3 156 14-174 1-235 (237)
203 PF10662 PduV-EutP: Ethanolami 99.9 4.7E-21 1E-25 123.2 13.2 134 14-170 3-142 (143)
204 PRK04000 translation initiatio 99.9 6.2E-21 1.3E-25 144.5 15.7 165 7-174 4-201 (411)
205 TIGR01394 TypA_BipA GTP-bindin 99.9 1.2E-20 2.7E-25 148.0 17.3 156 14-174 3-191 (594)
206 PRK09554 feoB ferrous iron tra 99.9 8.7E-21 1.9E-25 152.4 16.7 152 11-173 2-167 (772)
207 TIGR00437 feoB ferrous iron tr 99.9 5.2E-21 1.1E-25 150.3 15.0 140 19-173 1-154 (591)
208 cd04165 GTPBP1_like GTPBP1-lik 99.9 2.1E-20 4.5E-25 131.0 16.5 154 14-172 1-221 (224)
209 COG2229 Predicted GTPase [Gene 99.9 3.8E-20 8.3E-25 121.7 16.6 157 9-172 7-176 (187)
210 cd01876 YihA_EngB The YihA (En 99.9 1.3E-20 2.8E-25 126.6 14.8 154 14-173 1-170 (170)
211 TIGR00491 aIF-2 translation in 99.9 1.7E-20 3.8E-25 146.6 17.1 156 12-172 4-214 (590)
212 PRK10218 GTP-binding protein; 99.9 2.6E-20 5.6E-25 146.1 17.5 159 11-174 4-195 (607)
213 PRK10512 selenocysteinyl-tRNA- 99.9 2.9E-20 6.3E-25 146.5 17.2 156 14-174 2-166 (614)
214 PRK12736 elongation factor Tu; 99.9 3.4E-20 7.4E-25 140.0 16.6 169 1-174 1-201 (394)
215 KOG1423 Ras-like GTPase ERA [C 99.9 2.8E-20 6.1E-25 131.3 14.0 164 9-176 69-273 (379)
216 PRK12735 elongation factor Tu; 99.9 4.1E-20 8.8E-25 139.7 15.9 168 1-173 1-202 (396)
217 COG0218 Predicted GTPase [Gene 99.9 1.1E-19 2.3E-24 122.0 15.9 160 7-176 19-199 (200)
218 cd04169 RF3 RF3 subfamily. Pe 99.9 2.6E-19 5.6E-24 128.5 18.6 112 13-129 3-138 (267)
219 cd04104 p47_IIGP_like p47 (47- 99.8 3.7E-20 8.1E-25 127.8 11.9 158 12-176 1-186 (197)
220 TIGR00485 EF-Tu translation el 99.8 1.2E-19 2.6E-24 137.2 15.6 167 1-172 1-199 (394)
221 CHL00071 tufA elongation facto 99.8 1.2E-19 2.6E-24 137.7 15.1 168 1-173 1-210 (409)
222 PRK04004 translation initiatio 99.8 3.5E-19 7.5E-24 139.8 17.9 158 10-172 4-216 (586)
223 KOG0077 Vesicle coat complex C 99.8 3.7E-20 8.1E-25 119.4 9.6 164 9-173 17-192 (193)
224 PRK00049 elongation factor Tu; 99.8 3.6E-19 7.9E-24 134.5 16.2 168 1-173 1-202 (396)
225 cd04167 Snu114p Snu114p subfam 99.8 2E-19 4.2E-24 125.7 13.6 155 14-173 2-210 (213)
226 cd04170 EF-G_bact Elongation f 99.8 2.2E-18 4.7E-23 124.3 17.8 111 14-129 1-131 (268)
227 cd01886 EF-G Elongation factor 99.8 1.1E-18 2.4E-23 125.4 15.9 111 14-129 1-131 (270)
228 KOG1489 Predicted GTP-binding 99.8 2.7E-19 5.8E-24 126.9 12.0 161 5-172 189-365 (366)
229 PLN03126 Elongation factor Tu; 99.8 1.5E-18 3.2E-23 133.2 16.7 147 9-160 78-248 (478)
230 PTZ00141 elongation factor 1- 99.8 5.2E-19 1.1E-23 135.1 14.0 152 9-164 4-203 (446)
231 PRK05124 cysN sulfate adenylyl 99.8 6E-19 1.3E-23 135.7 13.6 153 9-165 24-216 (474)
232 PLN00043 elongation factor 1-a 99.8 1.4E-18 3E-23 132.8 15.4 150 10-164 5-203 (447)
233 PRK00741 prfC peptide chain re 99.8 3.7E-18 8E-23 132.5 17.7 116 8-128 6-145 (526)
234 COG1084 Predicted GTPase [Gene 99.8 4.8E-18 1E-22 121.3 16.5 157 10-173 166-335 (346)
235 TIGR02034 CysN sulfate adenyly 99.8 1.2E-18 2.5E-23 132.2 14.3 148 13-164 1-187 (406)
236 COG0370 FeoB Fe2+ transport sy 99.8 4.1E-18 9E-23 131.9 16.6 148 12-174 3-164 (653)
237 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 1.6E-19 3.4E-24 119.0 7.5 158 11-175 9-170 (216)
238 COG2262 HflX GTPases [General 99.8 7.8E-18 1.7E-22 123.6 16.9 155 11-175 191-357 (411)
239 PRK13351 elongation factor G; 99.8 5.7E-18 1.2E-22 136.2 17.6 116 9-129 5-140 (687)
240 COG1163 DRG Predicted GTPase [ 99.8 2.1E-18 4.7E-23 122.8 13.3 155 10-174 61-289 (365)
241 KOG1707 Predicted Ras related/ 99.8 2.1E-19 4.6E-24 136.1 8.6 163 8-173 5-174 (625)
242 PLN03127 Elongation factor Tu; 99.8 5.3E-18 1.2E-22 129.5 16.2 161 9-174 58-252 (447)
243 PRK05506 bifunctional sulfate 99.8 2.6E-18 5.7E-23 136.8 14.6 153 8-164 20-211 (632)
244 KOG3883 Ras family small GTPas 99.8 3.6E-18 7.8E-23 108.9 12.3 161 10-174 7-175 (198)
245 COG3596 Predicted GTPase [Gene 99.8 1.4E-18 3E-23 121.5 10.6 166 6-174 33-222 (296)
246 PF04670 Gtr1_RagA: Gtr1/RagA 99.8 9.3E-19 2E-23 122.3 9.7 159 14-174 1-176 (232)
247 PTZ00327 eukaryotic translatio 99.8 6.7E-18 1.4E-22 128.9 14.2 163 9-174 31-233 (460)
248 KOG4423 GTP-binding protein-li 99.8 4.9E-21 1.1E-25 125.7 -2.7 162 12-174 25-194 (229)
249 TIGR00503 prfC peptide chain r 99.8 2.1E-17 4.6E-22 128.4 16.2 116 8-128 7-146 (527)
250 cd00066 G-alpha G protein alph 99.8 1.3E-17 2.7E-22 122.6 13.3 134 42-175 146-312 (317)
251 COG0536 Obg Predicted GTPase [ 99.8 1.9E-17 4.1E-22 118.9 13.5 171 3-176 150-335 (369)
252 COG0532 InfB Translation initi 99.8 4.1E-17 8.9E-22 123.3 15.5 157 11-173 4-169 (509)
253 PF01926 MMR_HSR1: 50S ribosom 99.8 5.9E-17 1.3E-21 102.7 14.0 104 14-123 1-116 (116)
254 smart00275 G_alpha G protein a 99.8 2.7E-17 5.8E-22 121.8 14.2 134 42-175 169-335 (342)
255 COG5256 TEF1 Translation elong 99.8 1.5E-17 3.3E-22 122.1 12.5 154 9-164 4-201 (428)
256 cd01852 AIG1 AIG1 (avrRpt2-ind 99.8 5.6E-17 1.2E-21 111.9 14.5 161 13-175 1-185 (196)
257 KOG0462 Elongation factor-type 99.8 2.5E-17 5.3E-22 124.4 12.9 158 10-174 58-235 (650)
258 cd01885 EF2 EF2 (for archaea a 99.8 2.8E-17 6E-22 114.8 12.3 109 14-127 2-138 (222)
259 KOG1191 Mitochondrial GTPase [ 99.8 6.8E-17 1.5E-21 120.7 14.7 166 8-174 264-450 (531)
260 TIGR00484 EF-G translation elo 99.8 6.1E-17 1.3E-21 130.1 15.6 116 9-129 7-142 (689)
261 PRK12739 elongation factor G; 99.7 1.6E-16 3.6E-21 127.6 18.0 117 8-129 4-140 (691)
262 KOG0090 Signal recognition par 99.7 6.7E-17 1.5E-21 108.8 12.9 163 9-173 35-238 (238)
263 cd01899 Ygr210 Ygr210 subfamil 99.7 2.1E-16 4.5E-21 115.7 16.5 155 15-175 1-270 (318)
264 PF09439 SRPRB: Signal recogni 99.7 4.7E-18 1E-22 114.0 6.8 119 12-132 3-130 (181)
265 KOG1145 Mitochondrial translat 99.7 4.8E-16 1E-20 117.5 14.8 162 7-174 148-316 (683)
266 PRK09602 translation-associate 99.7 1.3E-15 2.9E-20 114.6 15.3 79 13-91 2-113 (396)
267 PRK12740 elongation factor G; 99.7 1.2E-15 2.7E-20 122.5 15.4 106 18-128 1-126 (668)
268 COG4917 EutP Ethanolamine util 99.7 4E-16 8.6E-21 96.4 9.6 138 14-172 3-144 (148)
269 PRK00007 elongation factor G; 99.7 1.5E-15 3.3E-20 122.1 15.5 145 9-159 7-171 (693)
270 PRK09866 hypothetical protein; 99.7 3.1E-15 6.7E-20 116.2 16.4 113 57-172 230-351 (741)
271 KOG0082 G-protein alpha subuni 99.7 1.5E-15 3.2E-20 111.0 13.3 135 41-175 179-345 (354)
272 COG0481 LepA Membrane GTPase L 99.7 5.2E-16 1.1E-20 115.7 11.0 156 9-174 6-186 (603)
273 cd01850 CDC_Septin CDC/Septin. 99.7 3.3E-15 7.2E-20 107.9 13.8 113 12-129 4-158 (276)
274 PRK13768 GTPase; Provisional 99.7 2.3E-15 4.9E-20 107.5 11.9 117 57-174 97-247 (253)
275 COG5257 GCD11 Translation init 99.7 1.9E-15 4.2E-20 107.8 11.0 162 10-175 8-203 (415)
276 PRK09435 membrane ATPase/prote 99.6 2E-15 4.3E-20 110.8 9.8 108 55-174 147-260 (332)
277 cd01853 Toc34_like Toc34-like 99.6 1.9E-14 4.1E-19 102.2 14.0 122 8-129 27-164 (249)
278 cd01882 BMS1 Bms1. Bms1 is an 99.6 1.4E-14 3E-19 101.9 13.2 143 9-160 36-182 (225)
279 KOG1532 GTPase XAB1, interacts 99.6 1.8E-15 3.8E-20 105.9 8.4 119 57-175 116-265 (366)
280 PRK14845 translation initiatio 99.6 2E-14 4.3E-19 118.3 15.3 146 23-173 472-672 (1049)
281 TIGR00991 3a0901s02IAP34 GTP-b 99.6 4.4E-14 9.6E-19 102.1 14.4 122 7-128 33-167 (313)
282 KOG1490 GTP-binding protein CR 99.6 1.4E-15 3E-20 114.0 6.7 165 9-175 165-342 (620)
283 KOG0458 Elongation factor 1 al 99.6 5E-15 1.1E-19 112.7 9.7 159 4-164 169-372 (603)
284 KOG3905 Dynein light intermedi 99.6 3.6E-14 7.8E-19 101.6 12.2 168 6-174 46-290 (473)
285 PF05049 IIGP: Interferon-indu 99.6 1.5E-14 3.3E-19 107.0 10.4 157 10-176 33-220 (376)
286 PF03029 ATP_bind_1: Conserved 99.6 5E-15 1.1E-19 104.6 7.1 115 58-173 92-236 (238)
287 PF04548 AIG1: AIG1 family; I 99.6 5E-14 1.1E-18 98.2 11.2 159 13-176 1-188 (212)
288 COG4108 PrfC Peptide chain rel 99.6 5.8E-14 1.3E-18 104.0 11.5 117 7-128 7-147 (528)
289 TIGR00490 aEF-2 translation el 99.6 4E-14 8.7E-19 114.4 11.4 114 10-128 17-152 (720)
290 TIGR00101 ureG urease accessor 99.5 3.1E-13 6.6E-18 93.2 13.2 101 57-174 92-196 (199)
291 COG3276 SelB Selenocysteine-sp 99.5 2.8E-13 6.1E-18 100.6 13.2 155 14-173 2-161 (447)
292 COG2895 CysN GTPases - Sulfate 99.5 1.9E-13 4.2E-18 98.8 10.9 151 9-163 3-192 (431)
293 KOG0461 Selenocysteine-specifi 99.5 4E-13 8.6E-18 97.1 12.5 160 10-174 5-193 (522)
294 COG1217 TypA Predicted membran 99.5 3.3E-13 7.1E-18 100.8 12.0 157 13-174 6-195 (603)
295 TIGR00750 lao LAO/AO transport 99.5 6.7E-13 1.4E-17 97.2 13.5 157 5-173 27-237 (300)
296 PF00503 G-alpha: G-protein al 99.5 8.2E-14 1.8E-18 105.5 8.7 132 42-173 220-389 (389)
297 PRK07560 elongation factor EF- 99.5 5.9E-13 1.3E-17 107.9 13.7 113 10-127 18-152 (731)
298 PTZ00258 GTP-binding protein; 99.5 1.3E-12 2.8E-17 97.8 14.2 82 10-91 19-126 (390)
299 PLN00116 translation elongatio 99.5 3.8E-13 8.3E-18 110.3 12.2 114 9-127 16-163 (843)
300 COG0050 TufB GTPases - transla 99.5 9.5E-13 2.1E-17 93.2 12.3 169 1-174 1-201 (394)
301 TIGR00073 hypB hydrogenase acc 99.5 1E-13 2.2E-18 96.4 7.5 57 114-173 148-206 (207)
302 PF03308 ArgK: ArgK protein; 99.5 1.6E-13 3.4E-18 96.1 8.3 152 10-173 27-229 (266)
303 PTZ00416 elongation factor 2; 99.5 4.7E-13 1E-17 109.6 12.2 113 10-127 17-157 (836)
304 KOG1144 Translation initiation 99.5 3.2E-13 6.9E-18 105.6 9.5 158 12-174 475-687 (1064)
305 PF05783 DLIC: Dynein light in 99.5 8.9E-13 1.9E-17 100.9 11.7 165 10-175 23-265 (472)
306 KOG1486 GTP-binding protein DR 99.4 2E-12 4.4E-17 89.8 10.7 155 10-174 60-288 (364)
307 PF00350 Dynamin_N: Dynamin fa 99.4 6.3E-12 1.4E-16 84.6 11.8 63 58-124 102-168 (168)
308 COG1703 ArgK Putative periplas 99.4 1.1E-12 2.5E-17 93.2 7.8 108 55-174 142-254 (323)
309 PRK09601 GTP-binding protein Y 99.4 2E-11 4.3E-16 90.6 13.1 79 13-91 3-107 (364)
310 smart00010 small_GTPase Small 99.4 1.3E-12 2.8E-17 83.4 6.0 114 13-163 1-115 (124)
311 KOG1707 Predicted Ras related/ 99.4 2.1E-11 4.5E-16 93.4 13.3 157 5-174 418-583 (625)
312 COG0480 FusA Translation elong 99.4 2.2E-12 4.8E-17 102.7 8.4 127 9-140 7-157 (697)
313 PRK10463 hydrogenase nickel in 99.4 1.4E-12 3E-17 93.7 6.7 57 114-173 230-288 (290)
314 TIGR00993 3a0901s04IAP86 chlor 99.4 3.5E-11 7.6E-16 94.3 14.6 118 11-128 117-250 (763)
315 TIGR00157 ribosome small subun 99.4 3.2E-12 7E-17 90.9 8.2 95 68-171 24-120 (245)
316 PF00735 Septin: Septin; Inte 99.4 3.2E-11 6.9E-16 87.3 13.4 117 12-133 4-161 (281)
317 TIGR02836 spore_IV_A stage IV 99.3 1.6E-10 3.4E-15 86.3 16.1 150 10-168 15-231 (492)
318 KOG3887 Predicted small GTPase 99.3 1E-11 2.2E-16 85.8 8.6 159 13-174 28-202 (347)
319 smart00053 DYNc Dynamin, GTPas 99.3 1.8E-10 4E-15 81.3 15.0 69 57-129 125-207 (240)
320 COG0378 HypB Ni2+-binding GTPa 99.3 1.3E-11 2.9E-16 82.7 8.6 79 82-173 119-200 (202)
321 KOG0085 G protein subunit Galp 99.3 5.7E-12 1.2E-16 86.6 6.3 135 41-175 183-350 (359)
322 KOG0099 G protein subunit Galp 99.3 2.1E-11 4.6E-16 85.2 7.8 132 44-175 189-370 (379)
323 KOG0410 Predicted GTP binding 99.2 4.1E-11 9E-16 86.1 7.9 152 8-174 174-341 (410)
324 COG0012 Predicted GTPase, prob 99.2 1.5E-09 3.3E-14 79.8 13.8 81 12-92 2-109 (372)
325 KOG3886 GTP-binding protein [S 99.2 1.4E-10 3E-15 79.7 7.7 118 12-131 4-133 (295)
326 KOG0460 Mitochondrial translat 99.2 5.3E-10 1.1E-14 81.0 10.5 161 9-173 51-244 (449)
327 cd01855 YqeH YqeH. YqeH is an 99.1 3.2E-10 6.9E-15 77.9 8.6 101 67-174 21-125 (190)
328 cd01900 YchF YchF subfamily. 99.1 3.1E-10 6.8E-15 81.6 8.8 77 15-91 1-103 (274)
329 KOG0466 Translation initiation 99.1 3.9E-11 8.5E-16 85.6 4.0 115 57-174 125-241 (466)
330 KOG0468 U5 snRNP-specific prot 99.1 1.1E-10 2.3E-15 90.9 6.5 114 9-127 125-262 (971)
331 cd01859 MJ1464 MJ1464. This f 99.1 5.1E-10 1.1E-14 74.5 8.9 93 72-174 4-96 (156)
332 COG5192 BMS1 GTP-binding prote 99.1 9.8E-10 2.1E-14 84.6 10.9 145 5-157 62-209 (1077)
333 KOG1487 GTP-binding protein DR 99.1 8E-10 1.7E-14 77.3 8.2 152 13-174 60-281 (358)
334 PRK12289 GTPase RsgA; Reviewed 99.1 8.1E-10 1.7E-14 82.3 8.3 89 74-171 83-172 (352)
335 COG5258 GTPBP1 GTPase [General 99.0 7.9E-09 1.7E-13 76.2 11.7 163 5-172 110-337 (527)
336 cd01858 NGP_1 NGP-1. Autoanti 99.0 2.6E-09 5.7E-14 71.1 8.0 91 76-173 4-94 (157)
337 COG5019 CDC3 Septin family pro 99.0 1.9E-08 4.1E-13 73.8 12.4 116 11-132 22-180 (373)
338 KOG0705 GTPase-activating prot 99.0 8.4E-10 1.8E-14 84.3 5.6 158 12-174 30-189 (749)
339 KOG1143 Predicted translation 99.0 4.2E-09 9.2E-14 77.4 8.6 155 11-170 166-384 (591)
340 cd01854 YjeQ_engC YjeQ/EngC. 99.0 3.8E-09 8.3E-14 77.0 8.5 88 75-171 73-161 (287)
341 PRK00098 GTPase RsgA; Reviewed 99.0 3.1E-09 6.6E-14 77.9 7.9 85 77-170 77-163 (298)
342 KOG1954 Endocytosis/signaling 99.0 2.1E-08 4.6E-13 73.7 11.8 117 11-131 57-228 (532)
343 KOG0467 Translation elongation 99.0 1.9E-09 4.2E-14 85.0 6.6 113 9-126 6-136 (887)
344 cd01858 NGP_1 NGP-1. Autoanti 98.9 3.4E-09 7.3E-14 70.6 6.7 53 11-66 101-156 (157)
345 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 4E-09 8.8E-14 69.0 6.7 53 14-67 85-138 (141)
346 cd01849 YlqF_related_GTPase Yl 98.9 9.8E-09 2.1E-13 68.2 8.3 82 82-172 1-83 (155)
347 cd01856 YlqF YlqF. Proteins o 98.9 8.7E-09 1.9E-13 69.6 8.1 98 64-173 2-100 (171)
348 KOG2486 Predicted GTPase [Gene 98.9 4.8E-09 1E-13 74.1 6.8 157 9-171 133-313 (320)
349 PRK12288 GTPase RsgA; Reviewed 98.9 1.3E-08 2.8E-13 75.9 9.2 89 78-172 118-206 (347)
350 cd04178 Nucleostemin_like Nucl 98.9 5.4E-09 1.2E-13 70.5 6.5 52 12-66 117-171 (172)
351 TIGR03596 GTPase_YlqF ribosome 98.9 1.4E-08 3E-13 73.7 9.1 100 64-175 4-104 (276)
352 TIGR03597 GTPase_YqeH ribosome 98.9 5.3E-09 1.2E-13 78.5 6.5 99 67-172 50-151 (360)
353 COG1618 Predicted nucleotide k 98.9 2.4E-07 5.3E-12 60.6 13.0 147 10-175 3-177 (179)
354 KOG2655 Septin family protein 98.9 5.5E-08 1.2E-12 71.8 11.3 116 12-132 21-176 (366)
355 KOG0448 Mitofusin 1 GTPase, in 98.8 1.1E-07 2.3E-12 74.8 12.9 145 8-157 105-309 (749)
356 cd01856 YlqF YlqF. Proteins o 98.8 1.4E-08 3.1E-13 68.5 6.6 57 10-67 113-170 (171)
357 TIGR00092 GTP-binding protein 98.8 4.6E-08 1E-12 72.9 9.7 80 13-92 3-109 (368)
358 KOG1547 Septin CDC10 and relat 98.8 1.4E-07 3E-12 65.6 11.1 125 10-139 44-209 (336)
359 cd01855 YqeH YqeH. YqeH is an 98.8 1.1E-08 2.3E-13 70.3 5.7 26 11-36 126-151 (190)
360 KOG0447 Dynamin-like GTP bindi 98.8 7.3E-07 1.6E-11 68.9 15.4 99 58-159 413-526 (980)
361 TIGR03596 GTPase_YlqF ribosome 98.8 2.8E-08 6.1E-13 72.2 7.0 55 10-67 116-173 (276)
362 PRK09563 rbgA GTPase YlqF; Rev 98.8 5.7E-08 1.2E-12 70.9 8.6 100 64-175 7-107 (287)
363 PRK09563 rbgA GTPase YlqF; Rev 98.8 3.2E-08 6.9E-13 72.2 7.2 55 10-67 119-176 (287)
364 cd01859 MJ1464 MJ1464. This f 98.7 4.3E-08 9.3E-13 65.2 6.9 55 11-66 100-155 (156)
365 cd01851 GBP Guanylate-binding 98.7 4.4E-07 9.6E-12 63.9 12.3 84 10-93 5-104 (224)
366 KOG0463 GTP-binding protein GP 98.7 8.4E-08 1.8E-12 70.9 8.8 154 12-170 133-354 (641)
367 KOG0459 Polypeptide release fa 98.7 6.1E-09 1.3E-13 77.1 3.0 160 8-167 75-279 (501)
368 KOG1491 Predicted GTP-binding 98.7 8.8E-08 1.9E-12 69.7 8.3 83 10-92 18-126 (391)
369 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 8.8E-08 1.9E-12 62.6 7.5 79 75-161 6-84 (141)
370 KOG0465 Mitochondrial elongati 98.7 1.1E-08 2.4E-13 79.2 3.5 113 11-128 38-170 (721)
371 PRK14974 cell division protein 98.7 7.5E-08 1.6E-12 71.4 7.6 140 11-167 139-323 (336)
372 cd01849 YlqF_related_GTPase Yl 98.7 6.1E-08 1.3E-12 64.4 6.3 54 10-66 98-154 (155)
373 PRK10416 signal recognition pa 98.7 1.2E-07 2.5E-12 70.0 8.2 140 10-166 112-302 (318)
374 COG1161 Predicted GTPases [Gen 98.7 4.5E-08 9.8E-13 72.4 5.9 54 11-67 131-187 (322)
375 TIGR00064 ftsY signal recognit 98.7 1.5E-07 3.2E-12 68.1 8.1 141 10-167 70-261 (272)
376 PF03193 DUF258: Protein of un 98.7 2.5E-08 5.5E-13 66.0 3.6 23 13-35 36-58 (161)
377 PRK12288 GTPase RsgA; Reviewed 98.6 1.2E-07 2.6E-12 70.8 6.0 54 15-71 208-271 (347)
378 PRK13796 GTPase YqeH; Provisio 98.6 3.3E-07 7.1E-12 69.1 8.0 99 68-173 57-158 (365)
379 cd03112 CobW_like The function 98.6 6.3E-07 1.4E-11 59.7 8.4 21 15-35 3-23 (158)
380 KOG0464 Elongation factor G [T 98.5 2.6E-08 5.5E-13 74.4 1.4 128 9-141 34-184 (753)
381 TIGR01425 SRP54_euk signal rec 98.5 1.2E-06 2.6E-11 66.8 9.7 111 11-128 99-253 (429)
382 TIGR03348 VI_IcmF type VI secr 98.5 1E-06 2.2E-11 75.5 10.2 112 15-129 114-258 (1169)
383 PRK12289 GTPase RsgA; Reviewed 98.5 3.2E-07 6.9E-12 68.6 5.8 22 14-35 174-195 (352)
384 KOG3859 Septins (P-loop GTPase 98.4 1.2E-06 2.6E-11 62.4 7.6 122 6-132 36-194 (406)
385 TIGR00157 ribosome small subun 98.4 6E-07 1.3E-11 64.1 6.3 54 13-70 121-184 (245)
386 KOG1534 Putative transcription 98.4 2.3E-06 5E-11 58.6 8.6 112 58-173 99-250 (273)
387 PRK01889 GTPase RsgA; Reviewed 98.4 2.4E-06 5.3E-11 64.2 9.5 84 78-170 110-193 (356)
388 COG1162 Predicted GTPases [Gen 98.4 4.8E-07 1E-11 65.4 5.5 54 14-70 166-229 (301)
389 cd03114 ArgK-like The function 98.4 6.1E-07 1.3E-11 59.1 5.5 58 56-125 91-148 (148)
390 PF00448 SRP54: SRP54-type pro 98.4 1.7E-07 3.6E-12 64.6 2.0 110 13-129 2-155 (196)
391 PRK13796 GTPase YqeH; Provisio 98.4 8E-07 1.7E-11 67.0 5.7 24 12-35 160-183 (365)
392 KOG1424 Predicted GTP-binding 98.3 7.6E-07 1.7E-11 68.1 4.8 53 11-66 313-368 (562)
393 TIGR03597 GTPase_YqeH ribosome 98.3 9.6E-07 2.1E-11 66.5 5.3 24 12-35 154-177 (360)
394 cd03115 SRP The signal recogni 98.3 1.6E-06 3.6E-11 58.6 5.9 67 56-129 82-154 (173)
395 PF02492 cobW: CobW/HypB/UreG, 98.3 6.4E-07 1.4E-11 60.9 3.9 119 15-139 3-167 (178)
396 PRK14722 flhF flagellar biosyn 98.3 4.4E-06 9.6E-11 62.8 8.5 121 8-128 133-295 (374)
397 PRK10867 signal recognition pa 98.3 2.6E-06 5.6E-11 65.3 7.3 24 10-33 98-121 (433)
398 COG0523 Putative GTPases (G3E 98.3 2.9E-05 6.2E-10 57.5 12.4 133 15-156 4-184 (323)
399 TIGR00959 ffh signal recogniti 98.3 3.4E-06 7.4E-11 64.6 7.0 79 55-140 181-266 (428)
400 PRK00098 GTPase RsgA; Reviewed 98.2 3.6E-06 7.8E-11 61.8 6.1 24 13-36 165-188 (298)
401 PRK11537 putative GTP-binding 98.2 1.9E-05 4.2E-10 58.4 10.0 21 14-34 6-26 (318)
402 cd01854 YjeQ_engC YjeQ/EngC. 98.2 4.1E-06 8.8E-11 61.2 6.2 24 13-36 162-185 (287)
403 COG1419 FlhF Flagellar GTP-bin 98.2 1.2E-05 2.6E-10 60.4 8.6 111 11-128 202-352 (407)
404 PRK11889 flhF flagellar biosyn 98.2 4.9E-06 1.1E-10 62.7 5.9 112 11-129 240-392 (436)
405 PF09547 Spore_IV_A: Stage IV 98.2 0.00014 3.1E-09 55.1 13.4 23 12-34 17-39 (492)
406 PRK14721 flhF flagellar biosyn 98.1 1.5E-05 3.3E-10 60.9 8.0 112 10-128 189-340 (420)
407 PRK12727 flagellar biosynthesi 98.1 2.9E-05 6.3E-10 60.7 9.2 112 10-128 348-498 (559)
408 PRK12726 flagellar biosynthesi 98.1 9.7E-05 2.1E-09 55.7 10.9 26 8-33 202-227 (407)
409 PRK13695 putative NTPase; Prov 98.0 0.00032 6.9E-09 47.5 12.3 21 13-33 1-21 (174)
410 PRK12723 flagellar biosynthesi 98.0 9E-05 2E-09 56.3 10.4 111 11-128 173-326 (388)
411 PF00005 ABC_tran: ABC transpo 98.0 5.2E-06 1.1E-10 53.8 3.3 32 3-34 2-33 (137)
412 COG1126 GlnQ ABC-type polar am 98.0 8E-06 1.7E-10 56.3 4.0 31 3-33 19-49 (240)
413 PRK00771 signal recognition pa 98.0 1.6E-05 3.4E-10 61.2 6.0 24 10-33 93-116 (437)
414 PRK12724 flagellar biosynthesi 98.0 2.3E-05 4.9E-10 59.7 6.8 110 12-128 223-373 (432)
415 cd01983 Fer4_NifH The Fer4_Nif 98.0 0.00011 2.3E-09 44.3 8.7 69 15-93 2-71 (99)
416 KOG0780 Signal recognition par 98.0 1.2E-05 2.6E-10 59.8 4.6 97 10-106 99-239 (483)
417 KOG2484 GTPase [General functi 98.0 8.4E-06 1.8E-10 60.7 3.6 56 9-66 249-306 (435)
418 PF13207 AAA_17: AAA domain; P 98.0 8.4E-06 1.8E-10 51.7 3.2 21 14-34 1-21 (121)
419 TIGR02475 CobW cobalamin biosy 97.9 0.00013 2.8E-09 54.7 9.9 20 15-34 7-26 (341)
420 COG1116 TauB ABC-type nitrate/ 97.9 8.4E-06 1.8E-10 57.3 3.2 32 3-34 20-51 (248)
421 COG0541 Ffh Signal recognition 97.9 2.5E-05 5.5E-10 59.1 5.9 28 6-33 94-121 (451)
422 PF06858 NOG1: Nucleolar GTP-b 97.9 1.7E-05 3.7E-10 42.8 3.7 46 78-125 11-58 (58)
423 PRK14723 flhF flagellar biosyn 97.9 5.4E-05 1.2E-09 61.7 8.1 23 12-34 185-207 (767)
424 KOG0057 Mitochondrial Fe/S clu 97.9 3.9E-05 8.5E-10 59.6 6.9 31 3-33 369-399 (591)
425 COG1162 Predicted GTPases [Gen 97.9 0.00014 3E-09 52.9 9.1 88 77-172 76-165 (301)
426 PRK06731 flhF flagellar biosyn 97.9 0.00014 2.9E-09 52.7 9.1 111 12-129 75-226 (270)
427 COG3523 IcmF Type VI protein s 97.9 9.1E-05 2E-09 62.9 9.3 113 15-129 128-271 (1188)
428 PRK06995 flhF flagellar biosyn 97.9 8.9E-05 1.9E-09 57.7 8.5 24 11-34 255-278 (484)
429 COG1117 PstB ABC-type phosphat 97.9 1.1E-05 2.4E-10 55.6 3.2 31 3-33 24-54 (253)
430 COG3640 CooC CO dehydrogenase 97.9 6.1E-05 1.3E-09 52.6 6.8 48 76-127 151-198 (255)
431 TIGR03574 selen_PSTK L-seryl-t 97.9 0.00011 2.4E-09 52.7 8.5 19 15-33 2-20 (249)
432 COG1136 SalX ABC-type antimicr 97.9 1.2E-05 2.6E-10 56.2 3.2 31 3-33 22-52 (226)
433 cd03110 Fer4_NifH_child This p 97.9 0.00048 1E-08 46.8 11.1 67 55-128 91-157 (179)
434 KOG0469 Elongation factor 2 [T 97.9 9.1E-06 2E-10 62.5 2.7 113 10-127 17-163 (842)
435 PF13555 AAA_29: P-loop contai 97.9 1.6E-05 3.5E-10 43.9 3.0 20 14-33 25-44 (62)
436 PRK08118 topology modulation p 97.9 1.4E-05 3E-10 53.8 3.2 21 14-34 3-23 (167)
437 cd03238 ABC_UvrA The excision 97.9 1.6E-05 3.6E-10 53.8 3.4 31 3-33 12-42 (176)
438 KOG1533 Predicted GTPase [Gene 97.8 3.2E-05 7E-10 53.9 4.8 21 13-33 3-23 (290)
439 PRK07261 topology modulation p 97.8 1.5E-05 3.3E-10 53.8 3.2 20 14-33 2-21 (171)
440 COG0552 FtsY Signal recognitio 97.8 4.4E-05 9.5E-10 56.0 5.5 111 10-127 137-297 (340)
441 COG4619 ABC-type uncharacteriz 97.8 1.8E-05 3.9E-10 52.6 3.2 32 2-33 19-50 (223)
442 COG1120 FepC ABC-type cobalami 97.8 1.8E-05 3.9E-10 56.5 3.4 32 3-34 19-50 (258)
443 COG0563 Adk Adenylate kinase a 97.8 1.7E-05 3.6E-10 53.9 3.1 23 13-35 1-23 (178)
444 PRK05703 flhF flagellar biosyn 97.8 0.00017 3.7E-09 55.6 8.8 110 12-128 221-371 (424)
445 PF13671 AAA_33: AAA domain; P 97.8 1.9E-05 4E-10 51.5 3.0 19 15-33 2-20 (143)
446 cd03264 ABC_drug_resistance_li 97.8 1.9E-05 4.2E-10 55.1 3.2 32 3-35 17-48 (211)
447 cd02038 FleN-like FleN is a me 97.8 0.0006 1.3E-08 44.4 9.8 105 17-127 5-110 (139)
448 cd00820 PEPCK_HprK Phosphoenol 97.8 3.2E-05 7E-10 47.7 3.5 30 4-33 7-36 (107)
449 cd00009 AAA The AAA+ (ATPases 97.8 0.0004 8.7E-09 44.9 9.0 25 11-35 18-42 (151)
450 cd04178 Nucleostemin_like Nucl 97.8 3.6E-05 7.9E-10 52.0 4.0 56 82-140 1-56 (172)
451 PF05729 NACHT: NACHT domain 97.7 0.00034 7.5E-09 46.5 8.5 20 15-34 3-22 (166)
452 cd02019 NK Nucleoside/nucleoti 97.7 3.3E-05 7.2E-10 43.9 3.0 20 15-34 2-21 (69)
453 COG1124 DppF ABC-type dipeptid 97.7 3.1E-05 6.7E-10 54.3 3.3 33 2-34 23-55 (252)
454 COG0529 CysC Adenylylsulfate k 97.7 0.0013 2.9E-08 44.1 10.6 155 7-176 18-192 (197)
455 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.7 3.7E-05 7.9E-10 53.9 3.6 32 4-35 22-53 (218)
456 TIGR00960 3a0501s02 Type II (G 97.7 3.6E-05 7.9E-10 53.9 3.6 32 4-35 21-52 (216)
457 PF13521 AAA_28: AAA domain; P 97.7 2.1E-05 4.6E-10 52.6 2.3 22 14-35 1-22 (163)
458 PF03266 NTPase_1: NTPase; In 97.7 3.3E-05 7.1E-10 52.0 3.2 20 14-33 1-20 (168)
459 COG1134 TagH ABC-type polysacc 97.7 3.4E-05 7.4E-10 54.1 3.3 32 2-33 43-74 (249)
460 cd03261 ABC_Org_Solvent_Resist 97.7 3.8E-05 8.3E-10 54.5 3.6 33 3-35 17-49 (235)
461 cd03224 ABC_TM1139_LivF_branch 97.7 4.1E-05 8.8E-10 53.8 3.7 33 3-35 17-49 (222)
462 cd03226 ABC_cobalt_CbiO_domain 97.7 3.9E-05 8.5E-10 53.3 3.5 33 3-35 17-49 (205)
463 TIGR02673 FtsE cell division A 97.7 3.7E-05 8E-10 53.7 3.4 33 3-35 19-51 (214)
464 COG3839 MalK ABC-type sugar tr 97.7 3.6E-05 7.9E-10 57.0 3.4 31 4-34 21-51 (338)
465 TIGR01166 cbiO cobalt transpor 97.7 4E-05 8.6E-10 52.6 3.5 33 3-35 9-41 (190)
466 cd03229 ABC_Class3 This class 97.7 4.5E-05 9.7E-10 51.8 3.6 33 3-35 17-49 (178)
467 TIGR03608 L_ocin_972_ABC putat 97.7 4E-05 8.7E-10 53.2 3.5 33 3-35 15-47 (206)
468 PRK15177 Vi polysaccharide exp 97.7 4.3E-05 9.3E-10 53.5 3.6 33 3-35 4-36 (213)
469 cd03301 ABC_MalK_N The N-termi 97.7 4.2E-05 9.2E-10 53.4 3.5 33 3-35 17-49 (213)
470 cd03293 ABC_NrtD_SsuB_transpor 97.7 4.1E-05 8.9E-10 53.8 3.5 32 4-35 22-53 (220)
471 cd03259 ABC_Carb_Solutes_like 97.7 4.2E-05 9.1E-10 53.5 3.5 33 3-35 17-49 (213)
472 KOG2485 Conserved ATP/GTP bind 97.7 9.3E-05 2E-09 53.7 5.2 25 10-34 141-165 (335)
473 cd03265 ABC_DrrA DrrA is the A 97.7 4.1E-05 9E-10 53.8 3.4 33 3-35 17-49 (220)
474 COG3638 ABC-type phosphate/pho 97.7 4.7E-05 1E-09 53.2 3.6 32 3-34 21-52 (258)
475 cd03292 ABC_FtsE_transporter F 97.7 4.5E-05 9.7E-10 53.3 3.6 32 4-35 19-50 (214)
476 PRK10751 molybdopterin-guanine 97.7 0.00016 3.6E-09 48.7 6.1 23 12-34 6-28 (173)
477 cd03216 ABC_Carb_Monos_I This 97.7 4.9E-05 1.1E-09 50.9 3.6 33 3-35 17-49 (163)
478 cd03225 ABC_cobalt_CbiO_domain 97.7 4.5E-05 9.7E-10 53.2 3.5 32 4-35 19-50 (211)
479 cd03269 ABC_putative_ATPase Th 97.7 4.9E-05 1.1E-09 53.0 3.7 33 3-35 17-49 (210)
480 KOG0054 Multidrug resistance-a 97.7 0.0002 4.3E-09 61.8 7.7 33 3-35 538-570 (1381)
481 cd03262 ABC_HisP_GlnQ_permease 97.7 4.4E-05 9.5E-10 53.3 3.4 32 4-35 18-49 (213)
482 PRK11248 tauB taurine transpor 97.7 4.8E-05 1E-09 54.7 3.6 33 3-35 18-50 (255)
483 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.7 5.4E-05 1.2E-09 49.6 3.5 32 4-35 18-49 (144)
484 cd03263 ABC_subfamily_A The AB 97.7 4.9E-05 1.1E-09 53.4 3.5 33 3-35 19-51 (220)
485 cd03260 ABC_PstB_phosphate_tra 97.7 5.2E-05 1.1E-09 53.5 3.6 33 3-35 17-49 (227)
486 cd02042 ParA ParA and ParB of 97.7 0.00049 1.1E-08 42.3 7.6 81 15-104 2-84 (104)
487 PRK13539 cytochrome c biogenes 97.7 5.3E-05 1.1E-09 52.8 3.5 33 3-35 19-51 (207)
488 TIGR02211 LolD_lipo_ex lipopro 97.7 5.4E-05 1.2E-09 53.2 3.6 32 4-35 23-54 (221)
489 PRK13540 cytochrome c biogenes 97.6 5.6E-05 1.2E-09 52.3 3.6 33 3-35 18-50 (200)
490 TIGR00235 udk uridine kinase. 97.6 5.7E-05 1.2E-09 52.6 3.6 26 9-34 3-28 (207)
491 PRK11629 lolD lipoprotein tran 97.6 5.5E-05 1.2E-09 53.6 3.6 33 3-35 26-58 (233)
492 cd03230 ABC_DR_subfamily_A Thi 97.6 5.9E-05 1.3E-09 51.0 3.6 33 3-35 17-49 (173)
493 cd03218 ABC_YhbG The ABC trans 97.6 5.2E-05 1.1E-09 53.7 3.4 33 3-35 17-49 (232)
494 TIGR02315 ABC_phnC phosphonate 97.6 5.2E-05 1.1E-09 54.1 3.4 32 4-35 20-51 (243)
495 TIGR01978 sufC FeS assembly AT 97.6 5.3E-05 1.1E-09 54.0 3.4 33 3-35 17-49 (243)
496 KOG0781 Signal recognition par 97.6 0.00034 7.4E-09 53.7 7.7 119 10-129 376-545 (587)
497 cd03257 ABC_NikE_OppD_transpor 97.6 5.2E-05 1.1E-09 53.5 3.3 32 4-35 23-54 (228)
498 TIGR01189 ccmA heme ABC export 97.6 6.4E-05 1.4E-09 51.9 3.7 33 3-35 17-49 (198)
499 cd03258 ABC_MetN_methionine_tr 97.6 5.6E-05 1.2E-09 53.6 3.4 32 4-35 23-54 (233)
500 cd03219 ABC_Mj1267_LivG_branch 97.6 5.2E-05 1.1E-09 53.8 3.3 32 4-35 18-49 (236)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-37 Score=203.38 Aligned_cols=161 Identities=29% Similarity=0.468 Sum_probs=138.7
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE----EeCCEEEEEEecCCchhhHHhHHHHhcCCC
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQRRFRTMWERYCRGVS 82 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d 82 (177)
....+.+||+++|+.|+|||+|+.||.++.|...+.+|++.++... +.+.+.+++|||+||++|++....++++++
T Consensus 4 ~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ah 83 (205)
T KOG0084|consen 4 PEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 83 (205)
T ss_pred cccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCC
Confidence 3567789999999999999999999999999999999999887763 355689999999999999999999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH-----HHHHHHhCcccccCCcee-EEEeee
Q 030429 83 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-----QALVDQLGLESITDREVC-CYMISC 156 (177)
Q Consensus 83 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~Sa 156 (177)
++|+|||+++.+||.++..|+.++..+.. .++|.++|+||+|+.+.... +++...++ .+ ++++||
T Consensus 84 Gii~vyDiT~~~SF~~v~~Wi~Ei~~~~~-~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~--------~~~f~ETSA 154 (205)
T KOG0084|consen 84 GIIFVYDITKQESFNNVKRWIQEIDRYAS-ENVPKLLVGNKCDLTEKRVVSTEEAQEFADELG--------IPIFLETSA 154 (205)
T ss_pred eEEEEEEcccHHHhhhHHHHHHHhhhhcc-CCCCeEEEeeccccHhheecCHHHHHHHHHhcC--------Ccceeeccc
Confidence 99999999999999999999999977644 56899999999999764322 22233332 24 899999
Q ss_pred cCCCChHHHHHHHHHHhhhc
Q 030429 157 KDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 157 ~~~~~i~~l~~~l~~~~~~~ 176 (177)
+++.|+++.|..+...++++
T Consensus 155 K~~~NVe~~F~~la~~lk~~ 174 (205)
T KOG0084|consen 155 KDSTNVEDAFLTLAKELKQR 174 (205)
T ss_pred CCccCHHHHHHHHHHHHHHh
Confidence 99999999999999988764
No 2
>PLN00223 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=1.6e-35 Score=201.72 Aligned_cols=167 Identities=34% Similarity=0.624 Sum_probs=144.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
.++.+||+++|.+|||||||++++..+.+. ...+|.+.....++.+++.+++||+||++++...+..+++++|++++|+
T Consensus 14 ~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~ 92 (181)
T PLN00223 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence 456799999999999999999999877765 4568888887778888999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDW 168 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 168 (177)
|+++++++.+...++..+.......+.|+++|+||+|+.+....+++.+.++......+.+.++++||++|+|++++|++
T Consensus 93 D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~ 172 (181)
T PLN00223 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
T ss_pred eCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHH
Confidence 99999999999888888876544457899999999999877777777777776544455566778999999999999999
Q ss_pred HHHHhhhc
Q 030429 169 LIKHSKTA 176 (177)
Q Consensus 169 l~~~~~~~ 176 (177)
|.+.+.++
T Consensus 173 l~~~~~~~ 180 (181)
T PLN00223 173 LSNNIANK 180 (181)
T ss_pred HHHHHhhc
Confidence 99987754
No 3
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=100.00 E-value=2.3e-35 Score=200.15 Aligned_cols=165 Identities=33% Similarity=0.621 Sum_probs=141.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
.++.+||+++|++|||||||++++..+.+. .+.+|.+........+++.+++||+||+.++...+..+++++|++++|+
T Consensus 10 ~~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~ 88 (175)
T smart00177 10 GNKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVV 88 (175)
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEE
Confidence 466799999999999999999999877764 4567888777777788899999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDW 168 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 168 (177)
|+++++++++...++..+.......+.|+++|+||+|+.+....+++.+.++......+.+.++++||++|.|++++|++
T Consensus 89 D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~ 168 (175)
T smart00177 89 DSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTW 168 (175)
T ss_pred ECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHH
Confidence 99999999999999998876544457899999999999766556677777765555556677889999999999999999
Q ss_pred HHHHhh
Q 030429 169 LIKHSK 174 (177)
Q Consensus 169 l~~~~~ 174 (177)
|.+.+.
T Consensus 169 l~~~~~ 174 (175)
T smart00177 169 LSNNLK 174 (175)
T ss_pred HHHHhc
Confidence 988754
No 4
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=100.00 E-value=3.2e-35 Score=198.15 Aligned_cols=162 Identities=35% Similarity=0.631 Sum_probs=136.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
.++.+||+++|.+|||||||++++..+.+. .+.+|.+.....+...++.+++||+||++++...+..++.++|++++|+
T Consensus 6 ~~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~ 84 (168)
T cd04149 6 GNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV 84 (168)
T ss_pred CCCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence 356799999999999999999999876664 3567777777777778899999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDW 168 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 168 (177)
|++++.++.+...++..+.......+.|+++|+||+|+.+....+++.+.++........++++++||++|.|++++|++
T Consensus 85 D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~ 164 (168)
T cd04149 85 DSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTW 164 (168)
T ss_pred eCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHH
Confidence 99999999999999888876544457899999999999765556666666654444445567899999999999999999
Q ss_pred HHH
Q 030429 169 LIK 171 (177)
Q Consensus 169 l~~ 171 (177)
|.+
T Consensus 165 l~~ 167 (168)
T cd04149 165 LSS 167 (168)
T ss_pred Hhc
Confidence 864
No 5
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=3.8e-35 Score=200.12 Aligned_cols=168 Identities=33% Similarity=0.615 Sum_probs=142.2
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
+..++.+||+++|++|||||||++++..+.+.. +.+|.+.....+...++.+++||+||+++++..+..+++++|++++
T Consensus 12 ~~~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 12 LFGKKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 345678999999999999999999998777754 5678787777777888999999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
|+|++++.++.....++..+.......+.|+++|+||.|+.+....+++.+.++......+.+.++++||++|.|++++|
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~ 170 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGL 170 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHH
Confidence 99999999999998888887665444568999999999997665566677777665455556678899999999999999
Q ss_pred HHHHHHhhh
Q 030429 167 DWLIKHSKT 175 (177)
Q Consensus 167 ~~l~~~~~~ 175 (177)
++|.+.+.+
T Consensus 171 ~~l~~~i~~ 179 (182)
T PTZ00133 171 DWLSANIKK 179 (182)
T ss_pred HHHHHHHHH
Confidence 999987765
No 6
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.9e-36 Score=196.57 Aligned_cols=163 Identities=22% Similarity=0.341 Sum_probs=138.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE----EeCCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
-+.+|++++|+.++||||||+|+..+.+...+..|+++++... ....+++++|||+||++|+.+.+.|++++.++|
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav 99 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 99 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence 3459999999999999999999999999999999999888763 345689999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|||+++..+|++..+|+.++.......+.-+++|+||.|+.+.... ...-+.......++.|.++||+.|.||+++
T Consensus 100 iVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqv---s~eEg~~kAkel~a~f~etsak~g~NVk~l 176 (221)
T KOG0094|consen 100 IVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQV---SIEEGERKAKELNAEFIETSAKAGENVKQL 176 (221)
T ss_pred EEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhh---hHHHHHHHHHHhCcEEEEecccCCCCHHHH
Confidence 99999999999999999999998877667889999999999876332 211111222223347999999999999999
Q ss_pred HHHHHHHhhh
Q 030429 166 IDWLIKHSKT 175 (177)
Q Consensus 166 ~~~l~~~~~~ 175 (177)
|..|...+..
T Consensus 177 FrrIaa~l~~ 186 (221)
T KOG0094|consen 177 FRRIAAALPG 186 (221)
T ss_pred HHHHHHhccC
Confidence 9998887654
No 7
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=100.00 E-value=6.7e-35 Score=195.00 Aligned_cols=158 Identities=33% Similarity=0.637 Sum_probs=133.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAAD 92 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 92 (177)
+||+++|.+|||||||++++..+.+. .+.+|.+.....+....+.+.+||+||++++...+..+++++|++++|+|+++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~ 79 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCC
Confidence 48999999999999999999877776 46677777776677788999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHH
Q 030429 93 RDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171 (177)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 171 (177)
+.+++....++..+.........|+++++||+|+.+....++..+.++......+.+.++++||++|.|++++|++|.+
T Consensus 80 ~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 80 RERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 9999999998888876544456899999999999765445566666654444455667889999999999999999864
No 8
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-36 Score=198.06 Aligned_cols=161 Identities=25% Similarity=0.423 Sum_probs=134.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
...+||+++|..++|||||+.|+..+.|.....+|++--+ ..+..++ +.|.+|||+|+++|+++.+.|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 4578999999999999999999999999998889988444 4444444 88999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
+|||+++.+||...+.|+.++-.... +++-+.+|+||+|+.+.. ..++..... ...+..+|++||++|.|++
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~yA-----e~~gll~~ETSAKTg~Nv~ 156 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAYA-----ESQGLLFFETSAKTGENVN 156 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHHH-----HhcCCEEEEEecccccCHH
Confidence 99999999999999999999977755 667788899999998732 222222222 2244579999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030429 164 AVIDWLIKHSKTA 176 (177)
Q Consensus 164 ~l~~~l~~~~~~~ 176 (177)
++|..|.+.+...
T Consensus 157 ~if~~Ia~~lp~~ 169 (200)
T KOG0092|consen 157 EIFQAIAEKLPCS 169 (200)
T ss_pred HHHHHHHHhccCc
Confidence 9999999987653
No 9
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=100.00 E-value=1.5e-33 Score=190.25 Aligned_cols=161 Identities=30% Similarity=0.583 Sum_probs=134.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADR 93 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 93 (177)
||+++|.+|||||||++++.++.+.. +.+|.+.....++..++.+++||+||+.++...+..++..+|++++|+|++++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~ 79 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHR 79 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcH
Confidence 68999999999999999999876654 67788877777888899999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccc-cCCceeEEEeeecCCCChHHHHHHHHHH
Q 030429 94 DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI-TDREVCCYMISCKDSINIDAVIDWLIKH 172 (177)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 172 (177)
.++++...|+..+.......+.|+++|+||+|+.+....++..+.+..... ..+.+.++++||++|.|++++|++|.+.
T Consensus 80 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~ 159 (169)
T cd04158 80 DRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQ 159 (169)
T ss_pred HHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHH
Confidence 999999999999876644456899999999999765555555555433222 1234578899999999999999999987
Q ss_pred hhh
Q 030429 173 SKT 175 (177)
Q Consensus 173 ~~~ 175 (177)
+..
T Consensus 160 ~~~ 162 (169)
T cd04158 160 LVA 162 (169)
T ss_pred Hhh
Confidence 654
No 10
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=3.6e-34 Score=197.49 Aligned_cols=159 Identities=21% Similarity=0.364 Sum_probs=126.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
+.|+++|..|||||||++++..+.+...+.+|.+..+. .+..++ +.+++|||+|+++|..++..+++++|++++||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 46899999999999999999999998888888765543 345444 88999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH-HHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
|++++++|+++..|+..+... ...+.|+++|+||+|+.+.... .+..+.+... ..++.+++|||++|.|++++|+
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~-~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~---~~~~~~~etSAktg~gV~e~F~ 156 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREISRQQGEKFAQQ---ITGMRFCEASAKDNFNVDEIFL 156 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHh---cCCCEEEEecCCCCCCHHHHHH
Confidence 999999999999888766443 3357999999999998653221 1111111111 1234799999999999999999
Q ss_pred HHHHHhhh
Q 030429 168 WLIKHSKT 175 (177)
Q Consensus 168 ~l~~~~~~ 175 (177)
++.+.+.+
T Consensus 157 ~l~~~~~~ 164 (202)
T cd04120 157 KLVDDILK 164 (202)
T ss_pred HHHHHHHH
Confidence 99987654
No 11
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=2.3e-34 Score=196.73 Aligned_cols=159 Identities=20% Similarity=0.340 Sum_probs=128.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
...+||+++|.+|||||||+.++.++.+...+.++.+.... .+..+ .+.+++||++|++++..++..+++++|+++
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 45699999999999999999999988887776666654432 33333 488999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
+|||++++.+++++..|+..+.... ++.|+++|+||+|+.+.. ..++..+.. ...++++++|||++|.|++
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~~a-----~~~~~~~~e~SAk~g~~V~ 156 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQAYA-----ERNGMTFFEVSPLCNFNIT 156 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHHHH-----HHcCCEEEEecCCCCCCHH
Confidence 9999999999999999999986543 478999999999996532 222222211 1234579999999999999
Q ss_pred HHHHHHHHHhhh
Q 030429 164 AVIDWLIKHSKT 175 (177)
Q Consensus 164 ~l~~~l~~~~~~ 175 (177)
++|++|.+.+..
T Consensus 157 ~~F~~l~~~i~~ 168 (189)
T cd04121 157 ESFTELARIVLM 168 (189)
T ss_pred HHHHHHHHHHHH
Confidence 999999987764
No 12
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=3.7e-35 Score=191.35 Aligned_cols=168 Identities=24% Similarity=0.395 Sum_probs=137.8
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EE--eCCEEEEEEecCCchhhHHhHHHHhcCCCE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSA 83 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (177)
..+..+||+++|++|+|||||++++++..|...+..|++..+.+ +. ...+.+++|||+|+++|.++-..+++++|.
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc 84 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC 84 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence 34567999999999999999999999999999999999855544 33 344789999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHcCCCC---CCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCC
Q 030429 84 ILYVVDAADRDSVPIARSELHELLMKPSL---SGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSI 160 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (177)
+++|||++++.+|+.+..|..+++.+... ..-|+++++||+|+........-.+..+........+|||++|||+..
T Consensus 85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~ 164 (210)
T KOG0394|consen 85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT 164 (210)
T ss_pred EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence 99999999999999999999999887553 236999999999997754322222222223334457799999999999
Q ss_pred ChHHHHHHHHHHhhh
Q 030429 161 NIDAVIDWLIKHSKT 175 (177)
Q Consensus 161 ~i~~l~~~l~~~~~~ 175 (177)
|+++.|+.+.+.+..
T Consensus 165 NV~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 165 NVDEAFEEIARRALA 179 (210)
T ss_pred cHHHHHHHHHHHHHh
Confidence 999999999987653
No 13
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=100.00 E-value=2.2e-33 Score=190.19 Aligned_cols=161 Identities=32% Similarity=0.605 Sum_probs=134.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
...++|+++|++|||||||++++.+..+ ....+|.+.....+..+++.+.+||+||++.+...+..++..+|++++|+|
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVD 90 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence 4568999999999999999999997644 345567777777777788999999999999999888999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHH
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 169 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 169 (177)
++++.++.+...|+..+.......+.|+++|+||+|+.+....++..+.++........++++++||++|.|++++|+++
T Consensus 91 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 170 (173)
T cd04154 91 SSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWL 170 (173)
T ss_pred CCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHH
Confidence 99999999988888888765444679999999999997765556666655543334456789999999999999999998
Q ss_pred HH
Q 030429 170 IK 171 (177)
Q Consensus 170 ~~ 171 (177)
.+
T Consensus 171 ~~ 172 (173)
T cd04154 171 VD 172 (173)
T ss_pred hc
Confidence 64
No 14
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=3.3e-34 Score=193.89 Aligned_cols=159 Identities=18% Similarity=0.264 Sum_probs=127.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
.+||+++|.+|||||||++++.++.+...+.+|.+.... .+..+ .+.+++||+||+.++..++..++..+|++++||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 479999999999999999999999888777777764443 23333 478999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH--HHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK--QALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
|++++.++.....|+..+.......+.|+++|+||+|+.+.... ++.. .+. ...++++++|||++|.||+++|
T Consensus 82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~-~~a----~~~~~~~~e~Sa~~~~~v~~~f 156 (172)
T cd04141 82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGR-NLA----REFNCPFFETSAALRHYIDDAF 156 (172)
T ss_pred ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHH-HHH----HHhCCEEEEEecCCCCCHHHHH
Confidence 99999999999887766655433457999999999998653221 2221 111 1234589999999999999999
Q ss_pred HHHHHHhhh
Q 030429 167 DWLIKHSKT 175 (177)
Q Consensus 167 ~~l~~~~~~ 175 (177)
++|.+.+.+
T Consensus 157 ~~l~~~~~~ 165 (172)
T cd04141 157 HGLVREIRR 165 (172)
T ss_pred HHHHHHHHH
Confidence 999987764
No 15
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=100.00 E-value=2.7e-33 Score=189.89 Aligned_cols=161 Identities=30% Similarity=0.578 Sum_probs=136.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
++.++|+++|++|+|||||++++..+.+.. ..+|.+.....+..+++.+.+||+||+..+...+..+++++|++++|+|
T Consensus 13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D 91 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVID 91 (174)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEE
Confidence 457899999999999999999999877764 5677777777788889999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHH
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 169 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 169 (177)
+++++++.....++..+.......+.|+++++||+|+.+....++..+.++........++++++||++|.|++++|++|
T Consensus 92 ~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l 171 (174)
T cd04153 92 STDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWI 171 (174)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHH
Confidence 99998898888888888665444578999999999997655566666776644444456689999999999999999999
Q ss_pred HH
Q 030429 170 IK 171 (177)
Q Consensus 170 ~~ 171 (177)
.+
T Consensus 172 ~~ 173 (174)
T cd04153 172 AS 173 (174)
T ss_pred hc
Confidence 75
No 16
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-34 Score=191.93 Aligned_cols=164 Identities=24% Similarity=0.381 Sum_probs=136.7
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE--E--eCCEEEEEEecCCchhhHHhHHHHhcCCCE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV--T--KGNVTIKLWDLGGQRRFRTMWERYCRGVSA 83 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~--~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (177)
.....+||+++|++|||||+|+.+|..+.+...+.+|+++++... . ...+.+++|||+||++|+.....|+++|+.
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 356779999999999999999999999999999999999777763 3 345789999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH-HHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 84 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
+++|||+++..+|+++..|+..+-++ .....|.++|+||+|+...... .+.-+.+ +...++.|+++||++|.||
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~-a~~~v~~~LvGNK~D~~~~R~V~~e~ge~l----A~e~G~~F~EtSAk~~~NI 162 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEH-ASDDVVKILVGNKCDLEEKRQVSKERGEAL----AREYGIKFFETSAKTNFNI 162 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhh-CCCCCcEEEeeccccccccccccHHHHHHH----HHHhCCeEEEccccCCCCH
Confidence 99999999999999999988887555 4468999999999999773221 1222222 1122457999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030429 163 DAVIDWLIKHSKTA 176 (177)
Q Consensus 163 ~~l~~~l~~~~~~~ 176 (177)
++.|-.|.+.+.++
T Consensus 163 ~eaF~~La~~i~~k 176 (207)
T KOG0078|consen 163 EEAFLSLARDILQK 176 (207)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988753
No 17
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=100.00 E-value=4.1e-33 Score=186.76 Aligned_cols=158 Identities=32% Similarity=0.664 Sum_probs=129.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGG-YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAAD 92 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 92 (177)
+|+++|++|||||||++++.+.. +...+.+|.+.....+..+++.+.+||+||+.++...+..+++++|++++|+|+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence 58999999999999999999765 35566778887776677788999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHcCCC--CCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHH
Q 030429 93 RDSVPIARSELHELLMKPS--LSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLI 170 (177)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~--~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 170 (177)
+.++.....++..+..... ..++|+++|+||+|+.+....++..+.++........+.++++||++|.|++++|++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence 9999888888887765422 24689999999999977655555555554433233445789999999999999999986
Q ss_pred H
Q 030429 171 K 171 (177)
Q Consensus 171 ~ 171 (177)
+
T Consensus 161 ~ 161 (162)
T cd04157 161 A 161 (162)
T ss_pred c
Confidence 5
No 18
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=100.00 E-value=8.4e-33 Score=184.72 Aligned_cols=157 Identities=39% Similarity=0.707 Sum_probs=128.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADR 93 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 93 (177)
||+++|+++||||||++++..+.+. ...+|.+.....+...+..+++||+||+..+...+..+++.+|++++|+|++++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 79 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDR 79 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCH
Confidence 6899999999999999999877665 345677776667777889999999999999999999999999999999999998
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHH
Q 030429 94 DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171 (177)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 171 (177)
.++.....++..+.......+.|+++|+||+|+.+.....++.+.++.........+++++||++|.|++++|++|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 80 DRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 777777777776655443457899999999999765555566665554333344568999999999999999999975
No 19
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=3.4e-33 Score=189.06 Aligned_cols=157 Identities=23% Similarity=0.323 Sum_probs=125.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-EE--eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
+||+++|++|||||||+.++..+.+...+.+|.+..... +. ...+.+.+|||+|++++......+++++|++++|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 689999999999999999999999988888888644432 22 345889999999999999999999999999999999
Q ss_pred CCCCCCHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCccccc------------CHHHHHHHhCcccccCCce-eEEEee
Q 030429 90 AADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEAL------------SKQALVDQLGLESITDREV-CCYMIS 155 (177)
Q Consensus 90 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~S 155 (177)
++++++|+++ ..|+..+.... .+.|+++|+||+|+.+.. ..++..+ + ....+. ++++||
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~-~----a~~~~~~~~~E~S 154 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEE-L----RKQIGAAAYIECS 154 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHH-H----HHHcCCCEEEECC
Confidence 9999999998 57887775443 469999999999996531 1111111 1 111223 599999
Q ss_pred ecCCCChHHHHHHHHHHhhhc
Q 030429 156 CKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 156 a~~~~~i~~l~~~l~~~~~~~ 176 (177)
|++|.||+++|+.+.+.+.+.
T Consensus 155 Ak~~~nV~~~F~~~~~~~~~~ 175 (176)
T cd04133 155 SKTQQNVKAVFDAAIKVVLQP 175 (176)
T ss_pred CCcccCHHHHHHHHHHHHhcC
Confidence 999999999999999987543
No 20
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=5.7e-33 Score=190.80 Aligned_cols=162 Identities=19% Similarity=0.252 Sum_probs=124.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
.+||+++|++|||||||+.++..+.+...+.+|.+..... +....+.+++|||+|+++|..++..+++++|++++||
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvy 82 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICF 82 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEE
Confidence 5799999999999999999999999988888888754432 3334578999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHH-HHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCc---------cccc-CCceeEEEeeec
Q 030429 89 DAADRDSVPIARS-ELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGL---------ESIT-DREVCCYMISCK 157 (177)
Q Consensus 89 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~Sa~ 157 (177)
|++++++|+++.. |...+... ..+.|+++|+||+|+.+.....+....... .... ...++++++||+
T Consensus 83 dit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 83 SIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 9999999999975 55555433 247999999999999654221111111100 0111 122579999999
Q ss_pred CCCChHHHHHHHHHHhhh
Q 030429 158 DSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 158 ~~~~i~~l~~~l~~~~~~ 175 (177)
+|.|++++|+++.+.+..
T Consensus 161 ~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 161 NQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999987653
No 21
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=4e-33 Score=190.02 Aligned_cols=160 Identities=20% Similarity=0.352 Sum_probs=129.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEe------------CCEEEEEEecCCchhhHHhHHH
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTK------------GNVTIKLWDLGGQRRFRTMWER 76 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~------------~~~~~~~~D~~g~~~~~~~~~~ 76 (177)
+.+||+++|++|||||||++++.++.+...+.+|.+..... +.. ..+.+.+||+||++++...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 56899999999999999999999999988888887755543 221 2478999999999999999999
Q ss_pred HhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEe
Q 030429 77 YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMI 154 (177)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 154 (177)
+++++|++++|+|+++++++..+..|+..+.......+.|+++|+||+|+.+... .++..+.... .+.+++++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~e~ 157 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADK-----YGIPYFET 157 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHH-----cCCeEEEE
Confidence 9999999999999999999999999998886654445789999999999865322 2222211111 12479999
Q ss_pred eecCCCChHHHHHHHHHHhhh
Q 030429 155 SCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 155 Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
||++|.|++++|++|.+.+.+
T Consensus 158 Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 158 SAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred eCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999987654
No 22
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=6e-34 Score=181.83 Aligned_cols=165 Identities=25% Similarity=0.412 Sum_probs=137.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EEeCCEEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
....+||+++|+.|+|||||+.+|....|.+....|++.++.. +..+.+.+.+|||+|+++|+.+.+.|++++.++
T Consensus 8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGi 87 (209)
T KOG0080|consen 8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGI 87 (209)
T ss_pred cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCcee
Confidence 3456999999999999999999999999998888888866654 345568899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
|+|||++.+++|..+..|+.++-.+...+++-.++|+||+|..+. +.+....+..++....+-|+++||++.+|++.
T Consensus 88 IlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~---R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~ 164 (209)
T KOG0080|consen 88 ILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESE---RVVDREEGLKFARKHRCLFIECSAKTRENVQC 164 (209)
T ss_pred EEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhc---ccccHHHHHHHHHhhCcEEEEcchhhhccHHH
Confidence 999999999999999999999988877778888999999997643 12222223333333445689999999999999
Q ss_pred HHHHHHHHhhhc
Q 030429 165 VIDWLIKHSKTA 176 (177)
Q Consensus 165 l~~~l~~~~~~~ 176 (177)
.|+.++.++.+.
T Consensus 165 ~FeelveKIi~t 176 (209)
T KOG0080|consen 165 CFEELVEKIIET 176 (209)
T ss_pred HHHHHHHHHhcC
Confidence 999999988653
No 23
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=7.8e-33 Score=186.25 Aligned_cols=157 Identities=23% Similarity=0.438 Sum_probs=128.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEE----eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
+||+++|++|||||||+++++.+.+...+.+|.+....... ...+.+.+|||||++.+......++..+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988888777888776655533 24578999999999998888888999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDW 168 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 168 (177)
|++++.++..+..|+..+..... +.|+++|+||+|+.+.....+..+.. ......++++||++|.|++++|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~--~~piiiv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~~~f~~ 153 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG--NIPIVLCGNKVDIKDRKVKAKQITFH-----RKKNLQYYEISAKSNYNFEKPFLW 153 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC--CCcEEEEEEchhcccccCCHHHHHHH-----HHcCCEEEEEeCCCCCChHHHHHH
Confidence 99999999999999888866543 79999999999997433222221111 123457999999999999999999
Q ss_pred HHHHhhhc
Q 030429 169 LIKHSKTA 176 (177)
Q Consensus 169 l~~~~~~~ 176 (177)
|.+.+.+.
T Consensus 154 l~~~~~~~ 161 (166)
T cd00877 154 LARKLLGN 161 (166)
T ss_pred HHHHHHhc
Confidence 99887653
No 24
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=100.00 E-value=2.8e-32 Score=183.74 Aligned_cols=157 Identities=34% Similarity=0.574 Sum_probs=134.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADR 93 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 93 (177)
+|+++|++|||||||++++.+. +...+.+|.+.....+..+++.+++||+||+..++..+..+++.+|++++|+|++++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~ 79 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDD 79 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCch
Confidence 4899999999999999999865 666777888888778888899999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCccccc---CCceeEEEeeecCC------CChHH
Q 030429 94 DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESIT---DREVCCYMISCKDS------INIDA 164 (177)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~------~~i~~ 164 (177)
.++.+...++..+.......+.|+++|+||+|+.+.....++.+.+...... ...+.+++|||++| .|+++
T Consensus 80 ~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~ 159 (167)
T cd04161 80 DRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVE 159 (167)
T ss_pred hHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHH
Confidence 9999999999988776555678999999999998876667777766544432 23467888999998 89999
Q ss_pred HHHHHHH
Q 030429 165 VIDWLIK 171 (177)
Q Consensus 165 l~~~l~~ 171 (177)
.|+||.+
T Consensus 160 ~~~wl~~ 166 (167)
T cd04161 160 GLRWLLA 166 (167)
T ss_pred HHHHHhc
Confidence 9999975
No 25
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=100.00 E-value=9.6e-33 Score=187.06 Aligned_cols=164 Identities=37% Similarity=0.743 Sum_probs=147.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
.++.++|+++|+.||||||+++++..+... ...||.+.....+..+++.+.+||++|+..++..|+.++.++|++++|+
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVv 89 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVV 89 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccceeeeCcEEEEEEeccccccccccceeeccccceeEEEE
Confidence 378899999999999999999999865443 3778999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCccccc-CCceeEEEeeecCCCChHHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESIT-DREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
|+++++.+.+....+..++.......+|+++++||+|+.+....+++.+.+...... .+.+.++.|||.+|.|+++.++
T Consensus 90 Dssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~ 169 (175)
T PF00025_consen 90 DSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLE 169 (175)
T ss_dssp ETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHH
T ss_pred ecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHH
Confidence 999999999999999999887666789999999999998887788888888766655 6788899999999999999999
Q ss_pred HHHHHh
Q 030429 168 WLIKHS 173 (177)
Q Consensus 168 ~l~~~~ 173 (177)
||.+.+
T Consensus 170 WL~~~~ 175 (175)
T PF00025_consen 170 WLIEQI 175 (175)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999864
No 26
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-33 Score=184.72 Aligned_cols=156 Identities=21% Similarity=0.320 Sum_probs=133.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
...+|++++|+.|||||+|+.+++...|.+.+..|+++.+.. ++...+.+++|||+|++.|++....|++++.+++
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 356899999999999999999999999999999998865543 4456688999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC-----HHHHHHHhCcccccCCceeEEEeeecCCC
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-----KQALVDQLGLESITDREVCCYMISCKDSI 160 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (177)
+|||++.+++|..+..|+.++.++. .++..+++++||+|+....+ -+.+.++.+ ..++++||++++
T Consensus 84 LVydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehg--------LifmETSakt~~ 154 (216)
T KOG0098|consen 84 LVYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEARREVSKEEGEAFAREHG--------LIFMETSAKTAE 154 (216)
T ss_pred EEEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhccccccHHHHHHHHHHcC--------ceeehhhhhhhh
Confidence 9999999999999999999997664 47889999999999965432 233444443 378899999999
Q ss_pred ChHHHHHHHHHHhh
Q 030429 161 NIDAVIDWLIKHSK 174 (177)
Q Consensus 161 ~i~~l~~~l~~~~~ 174 (177)
|++|.|......+-
T Consensus 155 ~VEEaF~nta~~Iy 168 (216)
T KOG0098|consen 155 NVEEAFINTAKEIY 168 (216)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999998877653
No 27
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=8.8e-33 Score=188.08 Aligned_cols=164 Identities=17% Similarity=0.237 Sum_probs=125.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEE--eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
...+||+++|++|||||||++++..+.+...+.+|.+.... .+. ...+.+++|||+|+++|....+.+++++|++++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 45789999999999999999999999998888888764443 233 345789999999999999999999999999999
Q ss_pred EEeCCCCCCHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH---------HHHHHHhCcccccCCc-eeEEEee
Q 030429 87 VVDAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEALSK---------QALVDQLGLESITDRE-VCCYMIS 155 (177)
Q Consensus 87 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~~S 155 (177)
|||++++.+|+++ ..|+..+.... +..|+++|+||+|+.+.... ..+....+.......+ .+|++||
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 160 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 160 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 9999999999997 67777765543 46899999999998542100 0000000111111123 3799999
Q ss_pred ecCCCC-hHHHHHHHHHHhhh
Q 030429 156 CKDSIN-IDAVIDWLIKHSKT 175 (177)
Q Consensus 156 a~~~~~-i~~l~~~l~~~~~~ 175 (177)
|++|.| |+++|+.+.+.+.+
T Consensus 161 Ak~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 161 ALQSENSVRDIFHVATLACVN 181 (182)
T ss_pred cCCCCCCHHHHHHHHHHHHhc
Confidence 999998 99999999986543
No 28
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=9.3e-33 Score=188.25 Aligned_cols=161 Identities=25% Similarity=0.435 Sum_probs=126.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
+||+++|.+|||||||+++++++.+...+.+|.+.... .+..+ .+.+.+||++|++++...+..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998888888886653 34444 478999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc---CHHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL---SKQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
|++++.+++++..|+..+..... ...| ++|+||+|+.... ..+...+.. .......+++++++||++|.|++++
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~-~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~-~~~a~~~~~~~~e~SAk~g~~v~~l 157 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNK-TAIP-ILVGTKYDLFADLPPEEQEEITKQA-RKYAKAMKAPLIFCSTSHSINVQKI 157 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCE-EEEEEchhccccccchhhhhhHHHH-HHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999888865432 3466 5789999985321 111111111 1111222357999999999999999
Q ss_pred HHHHHHHhhhc
Q 030429 166 IDWLIKHSKTA 176 (177)
Q Consensus 166 ~~~l~~~~~~~ 176 (177)
|+++.+.+.+.
T Consensus 158 f~~l~~~l~~~ 168 (182)
T cd04128 158 FKIVLAKAFDL 168 (182)
T ss_pred HHHHHHHHHhc
Confidence 99999887653
No 29
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=100.00 E-value=1.7e-32 Score=184.23 Aligned_cols=155 Identities=35% Similarity=0.629 Sum_probs=132.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCC
Q 030429 15 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD 94 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 94 (177)
|+++|++|||||||++++.++.+...+.+|.+.....+..+++.+.+||+||+.++...+..+++++|++++|+|++++.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~ 81 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSE 81 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHH
Confidence 79999999999999999998888777888888777777788899999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccc-cCCceeEEEeeecC------CCChHHHHH
Q 030429 95 SVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI-TDREVCCYMISCKD------SINIDAVID 167 (177)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~------~~~i~~l~~ 167 (177)
++.....|+..+.... .++|+++|+||+|+.......++.+.++.... ....+.++++||++ ++|++++|+
T Consensus 82 s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~ 159 (164)
T cd04162 82 RLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLS 159 (164)
T ss_pred HHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHH
Confidence 9999988888886543 57999999999999776666666555544443 34567889999988 999999999
Q ss_pred HHHH
Q 030429 168 WLIK 171 (177)
Q Consensus 168 ~l~~ 171 (177)
.++.
T Consensus 160 ~~~~ 163 (164)
T cd04162 160 QLIN 163 (164)
T ss_pred HHhc
Confidence 8864
No 30
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.5e-32 Score=190.23 Aligned_cols=159 Identities=26% Similarity=0.378 Sum_probs=126.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEe---CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTK---GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
+||+++|++|||||||+++|+++.+...+.+|.+.... .+.. ..+.+.+|||||++++...+..+++++|++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 58999999999999999999998888888888775433 2333 357899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCC---CCCCCcEEEEeeCCCccc--ccCHHHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 88 VDAADRDSVPIARSELHELLMKP---SLSGIPLLVLGNKIDKSE--ALSKQALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~iiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
||++++++++.+..|+..+.... ...++|+++|+||+|+.+ ....++..+..... ....++++||++|.|+
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~e~Sak~~~~v 156 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKEN----GFIGWFETSAKEGINI 156 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHc----CCceEEEEeCCCCCCH
Confidence 99999999999998887765432 235689999999999963 22233332222211 1146999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030429 163 DAVIDWLIKHSKT 175 (177)
Q Consensus 163 ~~l~~~l~~~~~~ 175 (177)
+++|++|.+.+.+
T Consensus 157 ~e~f~~l~~~l~~ 169 (201)
T cd04107 157 EEAMRFLVKNILA 169 (201)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 31
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=4.2e-33 Score=187.59 Aligned_cols=158 Identities=20% Similarity=0.298 Sum_probs=126.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
.+||+++|++|||||||++++.++.+...+.+|.+..... +.. ..+.+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 3799999999999999999999998887777776655432 333 347889999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|++++++++.+..|+..+... ..++.|+++|+||+|+.+... .++..+... ...++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~e~ 155 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQFAD-----ENGLLFLECSAKTGENVEDA 155 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHH
Confidence 9999999999999998877543 235689999999999865432 222222211 12347999999999999999
Q ss_pred HHHHHHHhhh
Q 030429 166 IDWLIKHSKT 175 (177)
Q Consensus 166 ~~~l~~~~~~ 175 (177)
|+.+.+.+.+
T Consensus 156 f~~l~~~~~~ 165 (166)
T cd04122 156 FLETAKKIYQ 165 (166)
T ss_pred HHHHHHHHhh
Confidence 9999987754
No 32
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=100.00 E-value=3.6e-32 Score=185.72 Aligned_cols=164 Identities=28% Similarity=0.515 Sum_probs=129.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEe-----CCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK-----GNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
+.+||+++|.+|||||||++++..+.+... .+|.+........ .++.+.+|||||++++...+..+++.+|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 468999999999999999999998776544 4666555444332 4689999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccc-cCCceeEEEeeecCCCChHH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI-TDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~ 164 (177)
+|+|++++.++.....++..+.......+.|+++|+||+|+.+....++..+.++.... .....+++++||++|.|+++
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 160 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQE 160 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHH
Confidence 99999998888888888877765544457899999999999765444554444432222 12345789999999999999
Q ss_pred HHHHHHHHhhh
Q 030429 165 VIDWLIKHSKT 175 (177)
Q Consensus 165 l~~~l~~~~~~ 175 (177)
++++|.+.+.+
T Consensus 161 l~~~l~~~l~~ 171 (183)
T cd04152 161 GLEKLYEMILK 171 (183)
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 33
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=100.00 E-value=3.1e-33 Score=176.00 Aligned_cols=170 Identities=75% Similarity=1.227 Sum_probs=161.5
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
...+..+.+.++|..+||||||+|....+.+.++..+|.+++.+.++.+++.+.+||+||+++|+++|..|.+++++++|
T Consensus 15 ~f~k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 15 SFWKEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred HHHHheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
|+|+++++..+..+..+..++......++|+++.+||.|+........+.+++++.....+.+.+|.+|+++..|++.+.
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~ 174 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITL 174 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHH
Confidence 99999999999999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhc
Q 030429 167 DWLIKHSKTA 176 (177)
Q Consensus 167 ~~l~~~~~~~ 176 (177)
+||.+.-+..
T Consensus 175 ~Wli~hsk~~ 184 (186)
T KOG0075|consen 175 DWLIEHSKSL 184 (186)
T ss_pred HHHHHHhhhh
Confidence 9999876543
No 34
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=4.2e-32 Score=185.49 Aligned_cols=162 Identities=31% Similarity=0.555 Sum_probs=137.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
++.++|+++|.+|||||||++++.++.+.. ..+|.+.....+..+++.+.+||+||+..++..+..++.++|++++|+|
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD 93 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVD 93 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence 677999999999999999999999776543 3566666667777788999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCccccc-------CCceeEEEeeecCCCCh
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESIT-------DREVCCYMISCKDSINI 162 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~~~~i 162 (177)
+++++++.....++..+.......++|+++|+||+|+......+++.+.++..... .+...+++|||++|.|+
T Consensus 94 ~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~ 173 (184)
T smart00178 94 AYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGY 173 (184)
T ss_pred CCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCCh
Confidence 99999898888888887765444578999999999997766677777777654422 25667999999999999
Q ss_pred HHHHHHHHHH
Q 030429 163 DAVIDWLIKH 172 (177)
Q Consensus 163 ~~l~~~l~~~ 172 (177)
++++++|...
T Consensus 174 ~~~~~wl~~~ 183 (184)
T smart00178 174 GEGFKWLSQY 183 (184)
T ss_pred HHHHHHHHhh
Confidence 9999999865
No 35
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=2.7e-32 Score=190.16 Aligned_cols=160 Identities=24% Similarity=0.415 Sum_probs=127.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAAD 92 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 92 (177)
+||+++|.+|||||||++++.++.+.. ..+|.+..+.......+.+.+||++|++.+...+..+++.+|++++|||+++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~ 79 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSN 79 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCC
Confidence 589999999999999999999988865 5677777666666677899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc---------------------CHH---HHHHHhCcc------
Q 030429 93 RDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL---------------------SKQ---ALVDQLGLE------ 142 (177)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~---------------------~~~---~~~~~~~~~------ 142 (177)
+.+|+.+..|+..+... .....|+++|+||+|+.+.. ..+ .+.+.....
T Consensus 80 ~~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~ 158 (220)
T cd04126 80 VQSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDED 158 (220)
T ss_pred HHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccccccc
Confidence 99999999999888654 23568999999999986510 111 122222100
Q ss_pred cccCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 143 SITDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 143 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
.......+|++|||++|.||+++|+.+++.+.
T Consensus 159 ~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 159 LSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred ccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 00012257999999999999999999998765
No 36
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=4.4e-33 Score=186.83 Aligned_cols=158 Identities=20% Similarity=0.320 Sum_probs=124.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcccee-EEEEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN-MRKVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
.+||+++|++|||||||++++.++.+...+.+|.+.. ...+..+ .+.+++|||||++++...+..+++++|++++|+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 3699999999999999999999888877776766522 2223333 467889999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH-HHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
|++++.+++....|+..+.......+.|+++|+||+|+.+.... .+....+.. ..+.+++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALAR----QWGCPFYETSAKSKINVDEVFA 156 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHH----HcCCeEEEecCCCCCCHHHHHH
Confidence 99999999999999888876544467899999999998653221 111111211 1124799999999999999999
Q ss_pred HHHHHh
Q 030429 168 WLIKHS 173 (177)
Q Consensus 168 ~l~~~~ 173 (177)
++.+.+
T Consensus 157 ~l~~~~ 162 (163)
T cd04136 157 DLVRQI 162 (163)
T ss_pred HHHHhc
Confidence 998764
No 37
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=100.00 E-value=5.9e-32 Score=180.58 Aligned_cols=157 Identities=38% Similarity=0.714 Sum_probs=135.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADR 93 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 93 (177)
||+++|.+|||||||++++.++. .....++.+.....+....+.+.+||+||+..+...+..+++++|++++|+|++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~ 79 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDR 79 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence 68999999999999999999776 34556677777777888889999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHH
Q 030429 94 DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171 (177)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 171 (177)
+++.....++..+.......+.|+++|+||+|+......++..+.++........++++++||++|.|++++|++|..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 80 ERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 999999999888877655567999999999999877666677777665544456678999999999999999999875
No 38
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=2.1e-32 Score=183.79 Aligned_cols=158 Identities=20% Similarity=0.327 Sum_probs=125.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
++||+++|.+|||||||+++++.+.+...+.+|.+.... .+..+ .+.+.+|||||++++...+..+++++|++++|+
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 369999999999999999999988887776676653322 23333 567889999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
|.+++.+++....|+..+.......+.|+++|+||+|+.+... .++. +.+.. ...++++++||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~----~~~~~~~~~Sa~~~~~v~~~~ 155 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQG-QNLAR----QWGCAFLETSAKAKINVNEIF 155 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHH-HHHHH----HhCCEEEEeeCCCCCCHHHHH
Confidence 9999999999999999887655556799999999999965322 1211 11111 112479999999999999999
Q ss_pred HHHHHHhh
Q 030429 167 DWLIKHSK 174 (177)
Q Consensus 167 ~~l~~~~~ 174 (177)
+++.+.+.
T Consensus 156 ~~l~~~l~ 163 (164)
T cd04175 156 YDLVRQIN 163 (164)
T ss_pred HHHHHHhh
Confidence 99998764
No 39
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=2e-32 Score=185.64 Aligned_cols=159 Identities=19% Similarity=0.224 Sum_probs=122.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
+||+++|.+|||||||++++.++.+...+.+|.+.... .+..++ +.+++||++|++++...+..+++++|++++|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 68999999999999999999999998888888775443 334444 789999999999999888889999999999999
Q ss_pred CCCCCCHHHHHH-HHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhC---------cccc-cCCceeEEEeeecC
Q 030429 90 AADRDSVPIARS-ELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLG---------LESI-TDREVCCYMISCKD 158 (177)
Q Consensus 90 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~~Sa~~ 158 (177)
++++++++++.. |+..+.... ++.|+++|+||+|+.+.....+...... .... ....+.++++||++
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHHC--PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 999999999975 655554332 4689999999999865422111111100 0001 11235799999999
Q ss_pred CCChHHHHHHHHHHh
Q 030429 159 SINIDAVIDWLIKHS 173 (177)
Q Consensus 159 ~~~i~~l~~~l~~~~ 173 (177)
|.|++++|+.++..+
T Consensus 160 g~~v~~~f~~~~~~~ 174 (175)
T cd01874 160 QKGLKNVFDEAILAA 174 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998754
No 40
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=5.9e-33 Score=190.53 Aligned_cols=160 Identities=21% Similarity=0.308 Sum_probs=128.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
..+||+++|.+|||||||++++.++.+...+.+|.+..+.. ++...+.+++|||||++++...+..+++.+|++++|
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv 83 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCV 83 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEE
Confidence 46899999999999999999999888877777777654432 334457788999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|++++++++....|+..+.......+.|+++|+||+|+.+.. ...+..+... ....+++++||++|.|++++
T Consensus 84 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~-----~~~~~~~e~Sak~~~gi~~~ 158 (189)
T PTZ00369 84 YSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAK-----SFGIPFLETSAKQRVNVDEA 158 (189)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH-----HhCCEEEEeeCCCCCCHHHH
Confidence 9999999999999998888765545678999999999986432 2222222111 11247999999999999999
Q ss_pred HHHHHHHhhh
Q 030429 166 IDWLIKHSKT 175 (177)
Q Consensus 166 ~~~l~~~~~~ 175 (177)
|++|.+.+.+
T Consensus 159 ~~~l~~~l~~ 168 (189)
T PTZ00369 159 FYELVREIRK 168 (189)
T ss_pred HHHHHHHHHH
Confidence 9999987654
No 41
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=100.00 E-value=9.7e-32 Score=184.69 Aligned_cols=163 Identities=33% Similarity=0.576 Sum_probs=135.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
.+..+|+++|++|||||||++++.++.+. .+.+|.+.....+..++..+.+||+||+..+...+..+++++|++++|+|
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D 95 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVD 95 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEE
Confidence 45799999999999999999999977664 45667777777788888999999999999999888899999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccc-----------cCCceeEEEeeecC
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI-----------TDREVCCYMISCKD 158 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Sa~~ 158 (177)
+++..++.....++..+.......+.|+++++||+|+......++..+.++.... ....+.+++|||++
T Consensus 96 ~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 175 (190)
T cd00879 96 AADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVK 175 (190)
T ss_pred CCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecC
Confidence 9999889888888888876655567999999999999765556666666653221 12346799999999
Q ss_pred CCChHHHHHHHHHHh
Q 030429 159 SINIDAVIDWLIKHS 173 (177)
Q Consensus 159 ~~~i~~l~~~l~~~~ 173 (177)
|.|++++|++|.+.+
T Consensus 176 ~~gv~e~~~~l~~~~ 190 (190)
T cd00879 176 RQGYGEAFRWLSQYL 190 (190)
T ss_pred CCChHHHHHHHHhhC
Confidence 999999999998753
No 42
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.9e-32 Score=186.03 Aligned_cols=161 Identities=18% Similarity=0.225 Sum_probs=122.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EE--EeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KV--TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
.+||+++|++|||||||++++.++.+...+.+|.+.... .+ ....+.+++|||+|++.+....+.+++++|++++||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 368999999999999999999999998888888764432 22 334578999999999999988889999999999999
Q ss_pred eCCCCCCHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCcccccC-HHH--------HHHHhCcccccCCce-eEEEeeec
Q 030429 89 DAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQA--------LVDQLGLESITDREV-CCYMISCK 157 (177)
Q Consensus 89 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~ 157 (177)
|++++++|+.+ ..|+..+.... +..|+++|+||+|+.+... ..+ +....+.......++ ++++|||+
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 99999999996 67777775543 4789999999999854200 000 000000111112232 69999999
Q ss_pred CCCC-hHHHHHHHHHHhh
Q 030429 158 DSIN-IDAVIDWLIKHSK 174 (177)
Q Consensus 158 ~~~~-i~~l~~~l~~~~~ 174 (177)
+|.| ++++|+.+.+...
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 9995 9999999998644
No 43
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=1.3e-32 Score=185.73 Aligned_cols=159 Identities=23% Similarity=0.362 Sum_probs=126.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
||+++|.+|||||||+++++++.+...+.+|.+.... .+.. ..+.+++||+||++++...+..+++++|++++|+|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 7999999999999999999999998888888875553 2333 34789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH---HHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK---QALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
++++.++.....|+..+.........|+++|+||+|+.+.... ++....+. .....+++++||++|.|++++|
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~g~~v~~lf 157 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLA----AEMQAEYWSVSALSGENVREFF 157 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHH----HHcCCeEEEEECCCCCCHHHHH
Confidence 9999999999999888766543345789999999998653221 11111111 1112468999999999999999
Q ss_pred HHHHHHhhhc
Q 030429 167 DWLIKHSKTA 176 (177)
Q Consensus 167 ~~l~~~~~~~ 176 (177)
+.|.+.+.+.
T Consensus 158 ~~l~~~~~~~ 167 (170)
T cd04108 158 FRVAALTFEL 167 (170)
T ss_pred HHHHHHHHHc
Confidence 9999987653
No 44
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=100.00 E-value=8.6e-32 Score=181.28 Aligned_cols=158 Identities=34% Similarity=0.667 Sum_probs=129.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC------CCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGY------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
+|+++|++|||||||++++.+... ...+.+|.+.....+..++..+.+||+||+..+...+..++..+|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 589999999999999999975322 23445677777777788899999999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCccc--ccCCceeEEEeeecCCCChHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES--ITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|+++++++.....++..+.......+.|+++++||+|+.+.....+..+.+.... ......+++++||++|.|++++
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREG 160 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHH
Confidence 99999888888888888887765556799999999999977655555555544322 2234568999999999999999
Q ss_pred HHHHHH
Q 030429 166 IDWLIK 171 (177)
Q Consensus 166 ~~~l~~ 171 (177)
+++|.+
T Consensus 161 ~~~l~~ 166 (167)
T cd04160 161 IEWLVE 166 (167)
T ss_pred HHHHhc
Confidence 999975
No 45
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=3.7e-32 Score=190.26 Aligned_cols=159 Identities=22% Similarity=0.371 Sum_probs=130.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEE----eCCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
...+||+++|.+|||||||+++++.+.+...+.+|.+....... ...+.+.+|||+|++++...+..+++++|+++
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 66799999999999999999999999998888888886665433 24589999999999999998899999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|||+++++++..+..|+..+.... .+.|+++|+||+|+.+.....+.. .+ ....++.+++|||++|.|++++
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-~~----~~~~~~~~~e~SAk~~~~i~~~ 163 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-TF----HRKKNLQYYEISAKSNYNFEKP 163 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhhhhccCCHHHH-HH----HHhcCCEEEEcCCCCCCCHHHH
Confidence 9999999999999999988886543 478999999999986432211111 11 1123457999999999999999
Q ss_pred HHHHHHHhhh
Q 030429 166 IDWLIKHSKT 175 (177)
Q Consensus 166 ~~~l~~~~~~ 175 (177)
|++|.+.+.+
T Consensus 164 f~~l~~~~~~ 173 (219)
T PLN03071 164 FLYLARKLAG 173 (219)
T ss_pred HHHHHHHHHc
Confidence 9999988753
No 46
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=5.6e-32 Score=189.62 Aligned_cols=168 Identities=20% Similarity=0.248 Sum_probs=126.7
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-E--EeCCEEEEEEecCCchhhHHhHHHHhcCCC
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-V--TKGNVTIKLWDLGGQRRFRTMWERYCRGVS 82 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d 82 (177)
+...-..+||+++|++|||||||+++|.++.+...+.+|.+..... + ....+.+.+|||+|+++|......+++++|
T Consensus 7 ~~~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad 86 (232)
T cd04174 7 PQPLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD 86 (232)
T ss_pred CcCceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCc
Confidence 3334467899999999999999999999999988888887654432 2 234588999999999999999999999999
Q ss_pred EEEEEEeCCCCCCHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH---------HHHHHHhCcccccCCce-eE
Q 030429 83 AILYVVDAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEALSK---------QALVDQLGLESITDREV-CC 151 (177)
Q Consensus 83 ~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~---------~~~~~~~~~~~~~~~~~-~~ 151 (177)
++++|||++++.+|+.. ..|+..+.... +..|+++|+||+|+.+.... ..+....+.......++ .|
T Consensus 87 ~vIlVyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~ 164 (232)
T cd04174 87 AVLLCFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVY 164 (232)
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEE
Confidence 99999999999999985 77777775543 46899999999998542100 00000001111112233 58
Q ss_pred EEeeecCCC-ChHHHHHHHHHHhhh
Q 030429 152 YMISCKDSI-NIDAVIDWLIKHSKT 175 (177)
Q Consensus 152 ~~~Sa~~~~-~i~~l~~~l~~~~~~ 175 (177)
++|||++|. |++++|+.++..+.+
T Consensus 165 ~EtSAktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 165 LECSAFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred EEccCCcCCcCHHHHHHHHHHHHHH
Confidence 999999998 899999999887654
No 47
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=1.1e-31 Score=180.53 Aligned_cols=157 Identities=22% Similarity=0.403 Sum_probs=125.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
+||+++|++|||||||++++.++.+...+.++.+.... .+.. ..+.+.+||+||++++...+..+++++|++++|+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 69999999999999999999999888777777765443 2322 3478999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
|++++++++.+..|+..+.... ....|+++|+||+|+.+... .++..+... ..+++++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l~ 155 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYS-WDNAQVILVGNKCDMEDERVVSSERGRQLAD-----QLGFEFFEASAKENINVKQVF 155 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCCEEEEEECcccCcccccCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHHH
Confidence 9999999999999988875432 24689999999999965432 122211111 112369999999999999999
Q ss_pred HHHHHHhhh
Q 030429 167 DWLIKHSKT 175 (177)
Q Consensus 167 ~~l~~~~~~ 175 (177)
+++.+.+..
T Consensus 156 ~~l~~~~~~ 164 (165)
T cd01865 156 ERLVDIICD 164 (165)
T ss_pred HHHHHHHHh
Confidence 999987654
No 48
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=6.4e-32 Score=181.85 Aligned_cols=157 Identities=20% Similarity=0.334 Sum_probs=126.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEE--eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
+||+++|++|||||||+++++++.+...+.++.+.... .+. ...+.+++|||||++.+...+..+++++|++++|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999888888888775543 233 34578999999999999988889999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCC----CCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 89 DAADRDSVPIARSELHELLMKPSL----SGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
|++++++++....|+..+...... .+.|+++|+||+|+.+.. ..++..+... ....+++++||++|.|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi 155 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAE-----SKGFKYFETSACTGEGV 155 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHH-----HcCCeEEEEECCCCCCH
Confidence 999999999999998888665432 568999999999997422 2222222111 12247999999999999
Q ss_pred HHHHHHHHHHhh
Q 030429 163 DAVIDWLIKHSK 174 (177)
Q Consensus 163 ~~l~~~l~~~~~ 174 (177)
+++|++|.+.+.
T Consensus 156 ~~l~~~l~~~l~ 167 (168)
T cd04119 156 NEMFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 49
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=100.00 E-value=2.1e-31 Score=177.54 Aligned_cols=157 Identities=71% Similarity=1.180 Sum_probs=135.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCC
Q 030429 15 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD 94 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 94 (177)
|+++|++|||||||++++.+..+...+.++.+.....+..+++.+.+||+||+..+...+..++..+|++++|+|+++++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 81 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT 81 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH
Confidence 79999999999999999999988888888888888888788899999999999999999999999999999999999988
Q ss_pred CHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHH
Q 030429 95 SVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171 (177)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 171 (177)
++.....++..+.......+.|+++|+||+|+.+....++..+.+..........+++++|+++|.|+++++++|.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 82 ALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 88888888888876554567899999999999776555556666554444445678999999999999999999975
No 50
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=4.5e-32 Score=181.57 Aligned_cols=156 Identities=18% Similarity=0.278 Sum_probs=124.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
+||+++|++|||||||+++++++.+...+.+|.+.... ....+ .+.+.+||+||++++..++..+++.+|++++|+|
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~ 81 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 81 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEE
Confidence 68999999999999999999988887777776654332 23333 3668899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC-HHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHH
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKDSINIDAVIDW 168 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 168 (177)
++++.++.+...|+..+.......+.|+++|+||+|+.+... ..+..+... ....+++++||++|.|++++|++
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~ 156 (162)
T cd04138 82 INSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAK-----SYGIPYIETSAKTRQGVEEAFYT 156 (162)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHH-----HhCCeEEEecCCCCCCHHHHHHH
Confidence 999999999988888887655446789999999999876322 222222211 11347999999999999999999
Q ss_pred HHHHh
Q 030429 169 LIKHS 173 (177)
Q Consensus 169 l~~~~ 173 (177)
+.+.+
T Consensus 157 l~~~~ 161 (162)
T cd04138 157 LVREI 161 (162)
T ss_pred HHHHh
Confidence 98765
No 51
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=100.00 E-value=1.2e-31 Score=179.46 Aligned_cols=157 Identities=28% Similarity=0.558 Sum_probs=127.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEe-CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK-GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAAD 92 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 92 (177)
+|+++|++|||||||++++.++.+.. ..+|.+.....+.. ..+.+.+||+||+..+...+..++..+|++++|+|+++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~ 79 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSD 79 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCc
Confidence 58999999999999999999887754 35666666555543 45899999999999999888889999999999999999
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCccccc-CCceeEEEeeecCCCChHHHHHHHHH
Q 030429 93 RDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESIT-DREVCCYMISCKDSINIDAVIDWLIK 171 (177)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~~l~~ 171 (177)
+.++.....++..+.......+.|+++|+||+|+......+++...++..... ...+++++|||++|.|++++|++|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 80 EARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 98899988888888765444579999999999997655555666555432222 24567999999999999999999864
No 52
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=9.2e-32 Score=181.24 Aligned_cols=159 Identities=26% Similarity=0.411 Sum_probs=128.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
..+||+++|++|+|||||++++.++.+...+.++.+.... .+..+ .+.+++||+||++++......+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 4589999999999999999999999888888888775443 33333 4689999999999999988899999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
|+|+++++++..+..|+..+... ...+.|+++|+||+|+.+.. ..++..+... ....+++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~ 155 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALAD-----EYGIKFLETSAKANINVEE 155 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHH
Confidence 99999999999999988887654 23568999999999997532 2222222221 1224799999999999999
Q ss_pred HHHHHHHHhhh
Q 030429 165 VIDWLIKHSKT 175 (177)
Q Consensus 165 l~~~l~~~~~~ 175 (177)
+|+++.+.+.+
T Consensus 156 ~~~~i~~~~~~ 166 (167)
T cd01867 156 AFFTLAKDIKK 166 (167)
T ss_pred HHHHHHHHHHh
Confidence 99999998765
No 53
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=4.1e-32 Score=181.94 Aligned_cols=155 Identities=23% Similarity=0.374 Sum_probs=123.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
+||+++|++|||||||++++.++.+...+.+|.+.... .+..+ .+.+.+||++|++++...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 48999999999999999999999998888888776543 34444 367899999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH-HHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
|++++++++.+..|+..+.... ..+.|+++|+||+|+.+.... .+....+.. ....+++++||++|.|++++|+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~----~~~~~~~e~Sa~~~~~v~~~f~ 155 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYA-PEGVQKILIGNKADEEQKRQVGDEQGNKLAK----EYGMDFFETSACTNSNIKESFT 155 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHHHH----HcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999988775542 346899999999998654321 111111111 1124799999999999999999
Q ss_pred HHHHH
Q 030429 168 WLIKH 172 (177)
Q Consensus 168 ~l~~~ 172 (177)
+|.+.
T Consensus 156 ~l~~~ 160 (161)
T cd04117 156 RLTEL 160 (161)
T ss_pred HHHhh
Confidence 99875
No 54
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=4.2e-32 Score=189.74 Aligned_cols=159 Identities=21% Similarity=0.313 Sum_probs=126.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEe---CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTK---GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
+||+++|++|||||||+++|.++.+...+.+|.+..... +.. ..+.+++||+||++.+...+..+++++|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 589999999999999999999998888888888765433 333 258899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCC--CCCCcEEEEeeCCCcccccCH-HHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPS--LSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
+|++++++++.+..|+..+..... ....|+++|+||+|+.+.... .+..+.+.. ...++++++||++|.|+++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~----~~~~~~~~iSAktg~gv~~ 156 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQ----ANGMESCLVSAKTGDRVNL 156 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHH----HcCCEEEEEECCCCCCHHH
Confidence 999999999999988888766532 234689999999999643211 111111111 1124689999999999999
Q ss_pred HHHHHHHHhhh
Q 030429 165 VIDWLIKHSKT 175 (177)
Q Consensus 165 l~~~l~~~~~~ 175 (177)
+|++|.+.+.+
T Consensus 157 lf~~l~~~l~~ 167 (215)
T cd04109 157 LFQQLAAELLG 167 (215)
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 55
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=1.3e-32 Score=188.99 Aligned_cols=158 Identities=17% Similarity=0.270 Sum_probs=123.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDA 90 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 90 (177)
||+++|.+|||||||+++|+++.+...+.+|.+.... ....+ .+.+++|||||++++...+..+++.+|++++|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 5899999999999999999988887777777664332 22333 36689999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCC--CCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 91 ADRDSVPIARSELHELLMKPS--LSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
+++.+++.+..|+..+..... ..+.|+++|+||+|+.+... ..+..+.. ...+++++++||++|.|++++|
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~SAk~~~~v~~l~ 155 (190)
T cd04144 81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALA-----RRLGCEFIEASAKTNVNVERAF 155 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHH-----HHhCCEEEEecCCCCCCHHHHH
Confidence 999999999998887755422 25689999999999865322 12211111 1122479999999999999999
Q ss_pred HHHHHHhhhc
Q 030429 167 DWLIKHSKTA 176 (177)
Q Consensus 167 ~~l~~~~~~~ 176 (177)
+++.+.+.++
T Consensus 156 ~~l~~~l~~~ 165 (190)
T cd04144 156 YTLVRALRQQ 165 (190)
T ss_pred HHHHHHHHHh
Confidence 9999887653
No 56
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=3e-32 Score=183.02 Aligned_cols=158 Identities=22% Similarity=0.332 Sum_probs=124.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEE--eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
+||+++|++|||||||++++.++.+...+.++...... ... ...+.+.+||+||++++...+..+++.+|++++|+|
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 48999999999999999999988877766666552222 222 334788999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
++++++++.+..|+..+.......+.|+++|+||+|+.+.. ..++..+.... ...+++++||++|.|++++|+
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~l~~ 155 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQ-----WGCPFLETSAKERVNVDEAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHH-----cCCEEEEeecCCCCCHHHHHH
Confidence 99999999999988887665554578999999999986532 22222222111 124799999999999999999
Q ss_pred HHHHHhhh
Q 030429 168 WLIKHSKT 175 (177)
Q Consensus 168 ~l~~~~~~ 175 (177)
+|.+.+.+
T Consensus 156 ~l~~~~~~ 163 (164)
T smart00173 156 DLVREIRK 163 (164)
T ss_pred HHHHHHhh
Confidence 99987754
No 57
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=1.2e-31 Score=179.72 Aligned_cols=157 Identities=25% Similarity=0.391 Sum_probs=124.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
+||+++|.+|||||||++++.++.+.....++.+..... +....+.+++|||||++++...+..+++++|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999888877766666544332 2234578999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDW 168 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 168 (177)
|++++.++.....|+..+.... .+.|+++|+||+|+.+.. ..+.. .+. ....++++++||++|.|++++|+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~--~~~p~ivv~nK~Dl~~~~-~~~~~-~~~----~~~~~~~~~~Sa~~~~gv~~l~~~ 152 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR--PEIPCIVVANKIDLDPSV-TQKKF-NFA----EKHNLPLYYVSAADGTNVVKLFQD 152 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEECccCchhH-HHHHH-HHH----HHcCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999988888875432 468999999999985421 11111 111 112357999999999999999999
Q ss_pred HHHHhhhcC
Q 030429 169 LIKHSKTAK 177 (177)
Q Consensus 169 l~~~~~~~~ 177 (177)
+.+.+.++|
T Consensus 153 l~~~~~~~~ 161 (161)
T cd04124 153 AIKLAVSYK 161 (161)
T ss_pred HHHHHHhcC
Confidence 999887765
No 58
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=3e-32 Score=182.91 Aligned_cols=157 Identities=21% Similarity=0.291 Sum_probs=124.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
.+||+++|++|+|||||++++.++.+.....++...... .... ..+.+++|||||+.++...+..+++++|++++|+
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 479999999999999999999988777666666553322 2223 3467899999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
|++++.+++....|+..+.......+.|+++|+||+|+..... .++..+... ..+++++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~l~ 156 (164)
T cd04145 82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELAR-----KLKIPYIETSAKDRLNVDKAF 156 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHH-----HcCCcEEEeeCCCCCCHHHHH
Confidence 9999999999999988887654446789999999999865422 122222111 123479999999999999999
Q ss_pred HHHHHHh
Q 030429 167 DWLIKHS 173 (177)
Q Consensus 167 ~~l~~~~ 173 (177)
++|.+.+
T Consensus 157 ~~l~~~~ 163 (164)
T cd04145 157 HDLVRVI 163 (164)
T ss_pred HHHHHhh
Confidence 9998765
No 59
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=4.5e-32 Score=182.55 Aligned_cols=158 Identities=25% Similarity=0.420 Sum_probs=126.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
.+||+++|++|||||||++++.++.+...+.++.+.... .+..+ .+.+++||+||++++...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 479999999999999999999988887777777664443 33333 46889999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+... .++..+... ...++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~ 155 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEFAD-----ELGIPFLETSAKNATNVEQA 155 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHHHHH-----HcCCeEEEEECCCCcCHHHH
Confidence 99999999999999888875542 34689999999999865422 222222111 12347999999999999999
Q ss_pred HHHHHHHhhh
Q 030429 166 IDWLIKHSKT 175 (177)
Q Consensus 166 ~~~l~~~~~~ 175 (177)
|+.|.+.+.+
T Consensus 156 ~~~i~~~~~~ 165 (166)
T cd01869 156 FMTMAREIKK 165 (166)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 60
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=2.6e-32 Score=183.60 Aligned_cols=157 Identities=21% Similarity=0.296 Sum_probs=121.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
+||+++|++|||||||+++++++.+...+.++.+..... .....+.+.+||+||++++......+++.+|++++|+|
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 789999999999999999999998877777776644432 22345789999999999999888888999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCC--CCCCCcEEEEeeCCCcccccCH-HHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 90 AADRDSVPIARSELHELLMKP--SLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
++++.+++++..|+..+.... ...+.|+++|+||+|+.+.... .+....+. .....+++++||++|.|++++|
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~~~~~~~~e~SA~~g~~v~~~f 157 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACA----TEWNCAFMETSAKTNHNVQELF 157 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHH----HHhCCcEEEeecCCCCCHHHHH
Confidence 999999999988887664432 2256899999999999653221 11111111 1123478999999999999999
Q ss_pred HHHHHHh
Q 030429 167 DWLIKHS 173 (177)
Q Consensus 167 ~~l~~~~ 173 (177)
++|..+.
T Consensus 158 ~~l~~~~ 164 (165)
T cd04140 158 QELLNLE 164 (165)
T ss_pred HHHHhcc
Confidence 9998653
No 61
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=2.8e-32 Score=183.01 Aligned_cols=158 Identities=16% Similarity=0.309 Sum_probs=123.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccc-eeEEEEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG-FNMRKVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
++||+++|.+|||||||+++++.+.+...+.+|.+ .....+..+ .+.+++||+||++++...+..+++++|++++|+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 47999999999999999999999888777766654 222233333 467889999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHH-HHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ-ALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
|++++.++.++..|+..+.......++|+++|+||+|+.+..... .....+.. ....+++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAE----EWGCPFMETSAKSKTMVNELFA 156 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHH----HhCCEEEEecCCCCCCHHHHHH
Confidence 999999999999998888765444679999999999986532211 11122211 1124789999999999999999
Q ss_pred HHHHHh
Q 030429 168 WLIKHS 173 (177)
Q Consensus 168 ~l~~~~ 173 (177)
++.+.+
T Consensus 157 ~l~~~l 162 (163)
T cd04176 157 EIVRQM 162 (163)
T ss_pred HHHHhc
Confidence 998765
No 62
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=4.3e-31 Score=177.62 Aligned_cols=158 Identities=26% Similarity=0.382 Sum_probs=124.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcccee--EEEEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN--MRKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
+.+||+++|++|+|||||++++..+.+.....++.+.. ...+..++ +.+++||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 45899999999999999999999888877777766543 34455555 688999999999999988999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+... ..+..+.... .....++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~v~~ 156 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKY-GASNVVLLLIGNKCDLEEQREVLFEEACTLAEK----NGMLAVLETSAKESQNVEE 156 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHH----cCCcEEEEEECCCCCCHHH
Confidence 99999999999999998888553 235789999999999875432 1222221111 1123689999999999999
Q ss_pred HHHHHHHHh
Q 030429 165 VIDWLIKHS 173 (177)
Q Consensus 165 l~~~l~~~~ 173 (177)
+|+++.+.+
T Consensus 157 ~~~~l~~~l 165 (165)
T cd01864 157 AFLLMATEL 165 (165)
T ss_pred HHHHHHHhC
Confidence 999998753
No 63
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=1.4e-31 Score=181.38 Aligned_cols=158 Identities=20% Similarity=0.254 Sum_probs=119.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
+||+++|.+|||||||+.++..+.+...+.+|.+.... .+.. ..+.+.+|||||++.+...+..++.++|++++|||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 81 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFS 81 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEE
Confidence 69999999999999999999998888887777753322 2233 34789999999999999988999999999999999
Q ss_pred CCCCCCHHHHHH-HHHHHHcCCCCCCCcEEEEeeCCCcccccC-HHHHHHHhCc--------ccc-cCCceeEEEeeecC
Q 030429 90 AADRDSVPIARS-ELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGL--------ESI-TDREVCCYMISCKD 158 (177)
Q Consensus 90 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~--------~~~-~~~~~~~~~~Sa~~ 158 (177)
+++++++.++.. |+..+... .++.|+++|+||+|+.+... .+...+.... ... .....++++|||++
T Consensus 82 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 82 LVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999964 55555433 24789999999999864321 1111111000 000 11224799999999
Q ss_pred CCChHHHHHHHHHH
Q 030429 159 SINIDAVIDWLIKH 172 (177)
Q Consensus 159 ~~~i~~l~~~l~~~ 172 (177)
|.|++++|+.+.+.
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999999864
No 64
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=100.00 E-value=6.4e-31 Score=178.04 Aligned_cols=163 Identities=33% Similarity=0.626 Sum_probs=137.3
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
...+.++|+++|++|||||||++++.+..+. ...++.+.....+...+..+.+||+||+..+...+..+++.+|++++|
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 88 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYV 88 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence 3455799999999999999999999976543 355677777777778889999999999999888888889999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
+|+++..++.....++..+.......++|+++++||+|+.+....+++.+.++......+.++++++||++|.|++++|+
T Consensus 89 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 168 (173)
T cd04155 89 IDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMN 168 (173)
T ss_pred EeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHH
Confidence 99999888888888888877665555799999999999987766777777777655555666788999999999999999
Q ss_pred HHHH
Q 030429 168 WLIK 171 (177)
Q Consensus 168 ~l~~ 171 (177)
+|.+
T Consensus 169 ~l~~ 172 (173)
T cd04155 169 WVCK 172 (173)
T ss_pred HHhc
Confidence 9975
No 65
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=7e-32 Score=187.90 Aligned_cols=159 Identities=24% Similarity=0.392 Sum_probs=127.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEe---CCEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTK---GNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
.+||+++|++|||||||++++.++.+.....+|.+..... +.. ..+.+++|||||++.+...+..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 4799999999999999999999988887777777655433 322 24789999999999999988999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
|||++++.+++++..|+..+.........|+++|+||+|+.+... .++. +.+.. ..+.+++++||++|.|+++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~-~~~~~----~~~~~~~e~Sak~g~~v~e 156 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEA-EKLAK----DLGMKYIETSARTGDNVEE 156 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHH-HHHHH----HhCCEEEEEeCCCCCCHHH
Confidence 999999999999999999886654444678999999999875322 1221 12211 1225799999999999999
Q ss_pred HHHHHHHHhhh
Q 030429 165 VIDWLIKHSKT 175 (177)
Q Consensus 165 l~~~l~~~~~~ 175 (177)
+|++|.+.+.+
T Consensus 157 ~f~~l~~~~~~ 167 (211)
T cd04111 157 AFELLTQEIYE 167 (211)
T ss_pred HHHHHHHHHHH
Confidence 99999987654
No 66
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=8.5e-32 Score=179.63 Aligned_cols=152 Identities=22% Similarity=0.320 Sum_probs=115.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDA 90 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 90 (177)
+||+++|++|||||||+.++..+.+.....++.+.....+..++ +.+.+||++|++.. .+++.+|++++|||+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~~-----~~~~~~~~~ilv~d~ 75 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPDA-----QFASWVDAVIFVFSL 75 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCch-----hHHhcCCEEEEEEEC
Confidence 48999999999999999999988877665554443334455554 77999999998652 356789999999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--cCH-HHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 91 ADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA--LSK-QALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
+++.+|+++..|+..+.........|+++|+||.|+... ... .+..+.+.. ....+.+++|||++|.||+++|+
T Consensus 76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~---~~~~~~~~e~SAk~~~~i~~~f~ 152 (158)
T cd04103 76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCA---DMKRCSYYETCATYGLNVERVFQ 152 (158)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHH---HhCCCcEEEEecCCCCCHHHHHH
Confidence 999999999999998877655567899999999998431 111 111122211 11235799999999999999999
Q ss_pred HHHHH
Q 030429 168 WLIKH 172 (177)
Q Consensus 168 ~l~~~ 172 (177)
.+.+.
T Consensus 153 ~~~~~ 157 (158)
T cd04103 153 EAAQK 157 (158)
T ss_pred HHHhh
Confidence 99865
No 67
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.6e-32 Score=176.73 Aligned_cols=171 Identities=34% Similarity=0.665 Sum_probs=160.5
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
.+...+..+|+++|--++||||++.++..+..... .||++++...+.++++.|++||++|+.+++..|..|++..+++|
T Consensus 11 ~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI 89 (181)
T KOG0070|consen 11 GLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLI 89 (181)
T ss_pred hccCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEE
Confidence 56788999999999999999999999987766655 89999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|+|.+|++.+.+.+..+..++........|+++++||.|++......++.+.+++.....+.+.+..|||.+|+|+.|.
T Consensus 90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~eg 169 (181)
T KOG0070|consen 90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEG 169 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHHHH
Confidence 99999999999999999999999877778999999999999999899999999999888889999999999999999999
Q ss_pred HHHHHHHhhhcC
Q 030429 166 IDWLIKHSKTAK 177 (177)
Q Consensus 166 ~~~l~~~~~~~~ 177 (177)
++++.+.+.+++
T Consensus 170 l~wl~~~~~~~~ 181 (181)
T KOG0070|consen 170 LDWLSNNLKKRR 181 (181)
T ss_pred HHHHHHHHhccC
Confidence 999999988754
No 68
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=1.1e-31 Score=185.69 Aligned_cols=159 Identities=25% Similarity=0.431 Sum_probs=127.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
...+||+++|++|||||||++++.++.+...+.+|.+.... .+..+ .+.+.+||+||++.+...+..+++++++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 35689999999999999999999988887777777775543 33333 468899999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
+|+|++++++++.+..|+..+.... ...|+++|+||+|+.+... .++..+.... .+.+++++||++|.|++
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~e~Sa~~~~gi~ 156 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYKFAGQ-----MGISLFETSAKENINVE 156 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHHHHHH-----cCCEEEEEECCCCcCHH
Confidence 9999999999999999988875542 4689999999999876432 1222222111 12479999999999999
Q ss_pred HHHHHHHHHhhh
Q 030429 164 AVIDWLIKHSKT 175 (177)
Q Consensus 164 ~l~~~l~~~~~~ 175 (177)
++|++|.+.+.+
T Consensus 157 ~lf~~l~~~~~~ 168 (199)
T cd04110 157 EMFNCITELVLR 168 (199)
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 69
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.9e-32 Score=171.31 Aligned_cols=161 Identities=24% Similarity=0.367 Sum_probs=133.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
+.-+||+++|..|+|||+|++++.++-|++....|++.++.. ++.+.+.+++|||+|+++|++....|++.+++++
T Consensus 5 kflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahali 84 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEE
Confidence 456899999999999999999999999999999999855443 4456689999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|||++...+|+-+..|+.++-.+.. .+.--|+|+||+|+.+.. ++.++.+..+......-|+++||++..|++.|
T Consensus 85 lvydiscqpsfdclpewlreie~yan-~kvlkilvgnk~d~~drr---evp~qigeefs~~qdmyfletsakea~nve~l 160 (213)
T KOG0095|consen 85 LVYDISCQPSFDCLPEWLREIEQYAN-NKVLKILVGNKIDLADRR---EVPQQIGEEFSEAQDMYFLETSAKEADNVEKL 160 (213)
T ss_pred EEEecccCcchhhhHHHHHHHHHHhh-cceEEEeeccccchhhhh---hhhHHHHHHHHHhhhhhhhhhcccchhhHHHH
Confidence 99999999999999999999977654 456678899999998762 33333333333334445789999999999999
Q ss_pred HHHHHHHhh
Q 030429 166 IDWLIKHSK 174 (177)
Q Consensus 166 ~~~l~~~~~ 174 (177)
|..+...+.
T Consensus 161 f~~~a~rli 169 (213)
T KOG0095|consen 161 FLDLACRLI 169 (213)
T ss_pred HHHHHHHHH
Confidence 999887654
No 70
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=4.2e-31 Score=178.45 Aligned_cols=159 Identities=25% Similarity=0.395 Sum_probs=125.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEE--eCCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
...+||+++|++|||||||++++.++.+.....++.+.... .+. ...+.+.+||+||++++...+..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 35689999999999999999999998888777777765432 233 34578899999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCC---CCCCcEEEEeeCCCccccc-CHHHHHHHhCcccccCCceeEEEeeecCCCC
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPS---LSGIPLLVLGNKIDKSEAL-SKQALVDQLGLESITDREVCCYMISCKDSIN 161 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 161 (177)
+|||++++++++.+..|...+..... ..+.|+++|+||+|+.+.. ..++..+.... ....+++++||++|.|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~ 158 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRE----NGDYPYFETSAKDATN 158 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHH----CCCCeEEEEECCCCCC
Confidence 99999999999999988887765432 2468999999999986432 22333222211 1223689999999999
Q ss_pred hHHHHHHHHHH
Q 030429 162 IDAVIDWLIKH 172 (177)
Q Consensus 162 i~~l~~~l~~~ 172 (177)
++++|+.+.+.
T Consensus 159 v~~~~~~~~~~ 169 (170)
T cd04116 159 VAAAFEEAVRR 169 (170)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 71
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.98 E-value=6.5e-31 Score=168.38 Aligned_cols=166 Identities=31% Similarity=0.594 Sum_probs=150.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
.++.++|+++|..|+||||++++|.+.. .....+|.+++..+...+++++++||++||...++.|+.|+.+.|++|+|+
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvv 91 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVV 91 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEE
Confidence 4568999999999999999999997444 677889999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccc-cCCceeEEEeeecCCCChHHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI-TDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
|.+|+..+++....+..++...+..+.|++++.||.|+......+++...+..... ...+++.+.||+.+|+++.+-+.
T Consensus 92 DssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gid 171 (185)
T KOG0073|consen 92 DSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGID 171 (185)
T ss_pred ECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHH
Confidence 99999999999999999988877778899999999999987777888887777666 66788999999999999999999
Q ss_pred HHHHHhhh
Q 030429 168 WLIKHSKT 175 (177)
Q Consensus 168 ~l~~~~~~ 175 (177)
||.+.+..
T Consensus 172 WL~~~l~~ 179 (185)
T KOG0073|consen 172 WLCDDLMS 179 (185)
T ss_pred HHHHHHHH
Confidence 99887654
No 72
>PLN03110 Rab GTPase; Provisional
Probab=99.98 E-value=2e-31 Score=186.33 Aligned_cols=163 Identities=21% Similarity=0.328 Sum_probs=130.0
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSA 83 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (177)
.....+||+++|++|||||||+++|.++.+...+.+|.+.... .+..+ .+.+++||+||++++...+..+++.+++
T Consensus 8 ~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~ 87 (216)
T PLN03110 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (216)
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCE
Confidence 3456789999999999999999999988887777777775543 33333 4789999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH-HHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 84 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
+++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.... .+....+.. ...++++++||++|.|+
T Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~----~~~~~~~e~SA~~g~~v 162 (216)
T PLN03110 88 ALLVYDITKRQTFDNVQRWLRELRDHA-DSNIVIMMAGNKSDLNHLRSVAEEDGQALAE----KEGLSFLETSALEATNV 162 (216)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEEChhcccccCCCHHHHHHHHH----HcCCEEEEEeCCCCCCH
Confidence 999999999999999999988775542 357899999999998653321 122222221 23458999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030429 163 DAVIDWLIKHSKT 175 (177)
Q Consensus 163 ~~l~~~l~~~~~~ 175 (177)
+++|+.|.+.+.+
T Consensus 163 ~~lf~~l~~~i~~ 175 (216)
T PLN03110 163 EKAFQTILLEIYH 175 (216)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987754
No 73
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.98 E-value=1.2e-31 Score=184.08 Aligned_cols=161 Identities=20% Similarity=0.255 Sum_probs=122.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-EE--eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
.||+++|++|||||||++++.++.+...+.+|.+..... +. ...+.+++||++|++.+...+..++.++|++++|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 389999999999999999999998887777776544332 22 234789999999999998888888999999999999
Q ss_pred CCCCCCHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHh---------Ccccc-cCCceeEEEeeecC
Q 030429 90 AADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQL---------GLESI-TDREVCCYMISCKD 158 (177)
Q Consensus 90 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~---------~~~~~-~~~~~~~~~~Sa~~ 158 (177)
++++++++.+. .|+..+.... .+.|+++|+||+|+.+.....+..... +.... ....+++++|||++
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~--~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHC--PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 99999999886 4666665432 478999999999997643222111111 00001 11235799999999
Q ss_pred CCChHHHHHHHHHHhhh
Q 030429 159 SINIDAVIDWLIKHSKT 175 (177)
Q Consensus 159 ~~~i~~l~~~l~~~~~~ 175 (177)
|.|++++|++|.+.+..
T Consensus 159 ~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 159 NRGVNEAFTEAARVALN 175 (189)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999988764
No 74
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.98 E-value=4.7e-31 Score=184.08 Aligned_cols=162 Identities=18% Similarity=0.263 Sum_probs=122.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEE--eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
+||+++|++|||||||+.+|.++.+...+.+|.+..+. .+. ...+.+.+|||+|++.|....+.++.++|++++|||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd 81 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD 81 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence 69999999999999999999999998888888775543 233 345789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH-HHH--------HHHhCcccccCCc-eeEEEeeecCC
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QAL--------VDQLGLESITDRE-VCCYMISCKDS 159 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~--------~~~~~~~~~~~~~-~~~~~~Sa~~~ 159 (177)
++++++++.+..+|...... ..++.|+++|+||+|+.+.... ... ....+.......+ .+|++|||+++
T Consensus 82 is~~~Sf~~i~~~w~~~~~~-~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~ 160 (222)
T cd04173 82 ISRPETLDSVLKKWQGETQE-FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSS 160 (222)
T ss_pred CCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 99999999996555443333 2257899999999999653211 100 0000111111122 47999999999
Q ss_pred CC-hHHHHHHHHHHhhh
Q 030429 160 IN-IDAVIDWLIKHSKT 175 (177)
Q Consensus 160 ~~-i~~l~~~l~~~~~~ 175 (177)
.+ |+++|+.+......
T Consensus 161 ~~~V~~~F~~~~~~~~~ 177 (222)
T cd04173 161 ERSVRDVFHVATVASLG 177 (222)
T ss_pred CcCHHHHHHHHHHHHHh
Confidence 85 99999999886544
No 75
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.98 E-value=2.3e-31 Score=179.81 Aligned_cols=159 Identities=28% Similarity=0.451 Sum_probs=125.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeC--CEEEEEEecCCchhhH-HhHHHHhcCCCEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFR-TMWERYCRGVSAILY 86 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~-~~~~~~~~~~d~~i~ 86 (177)
.+||+++|++|||||||+++++++.+...+.++.+.... .+..+ .+.+++||+||++++. ..+..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 479999999999999999999988887777777765443 23333 4789999999999887 467778999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH-HHHHHHhCcccccCCceeEEEeeecC---CCCh
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKD---SINI 162 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i 162 (177)
|+|+++++++.....|+..+.......+.|+++|+||+|+...... .+..+.+.. ....+++++||++ +.++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~~~~i 157 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFAD----AHSMPLFETSAKDPSENDHV 157 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHH----HcCCcEEEEeccCCcCCCCH
Confidence 9999999999999999888876655567999999999998654321 122222211 1225799999999 8999
Q ss_pred HHHHHHHHHHhh
Q 030429 163 DAVIDWLIKHSK 174 (177)
Q Consensus 163 ~~l~~~l~~~~~ 174 (177)
+++|..+.+.++
T Consensus 158 ~~~f~~l~~~~~ 169 (170)
T cd04115 158 EAIFMTLAHKLK 169 (170)
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
No 76
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.98 E-value=8.3e-31 Score=180.16 Aligned_cols=158 Identities=28% Similarity=0.436 Sum_probs=123.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEE--EEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSE-DMIPTVGFNMRK--VTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
+||+++|++|||||||++++.++.+.. .+.+|.+..... +.. ..+.+++|||||+.++......+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999888753 455666544432 333 347899999999999998888999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|++++++++++..|+..+.... ....|+++|+||+|+..... .++.. .+.. ....+++++||++|.|++++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~~-~l~~----~~~~~~~e~Sa~~~~~v~~l 154 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYA-QEDVVIMLLGNKADMSGERVVKREDGE-RLAK----EYGVPFMETSAKTGLNVELA 154 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccchhccccCHHHHH-HHHH----HcCCeEEEEeCCCCCCHHHH
Confidence 99999999999999888876543 24689999999999864321 22211 1111 11247999999999999999
Q ss_pred HHHHHHHhhhc
Q 030429 166 IDWLIKHSKTA 176 (177)
Q Consensus 166 ~~~l~~~~~~~ 176 (177)
|++|.+.+.+.
T Consensus 155 ~~~l~~~~~~~ 165 (191)
T cd04112 155 FTAVAKELKHR 165 (191)
T ss_pred HHHHHHHHHHh
Confidence 99999987654
No 77
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.98 E-value=1.3e-30 Score=174.75 Aligned_cols=153 Identities=23% Similarity=0.432 Sum_probs=122.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EE----eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VT----KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~----~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
+||+++|.+|+|||||++++.++.+...+.+|.+..... +. ...+.+++||+||++++...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 489999999999999999999988887777777755533 22 335789999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
|+|++++++++.+..|+..+.... .+.|+++|+||+|+..... .++..+.... ...+++++||++|.|+++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~ 153 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC--GDIPMVLVQTKIDLLDQAVITNEEAEALAKR-----LQLPLFRTSVKDDFNVTE 153 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhcccccCCCHHHHHHHHHH-----cCCeEEEEECCCCCCHHH
Confidence 999999999999998888775432 4789999999999865322 2222221111 123799999999999999
Q ss_pred HHHHHHHH
Q 030429 165 VIDWLIKH 172 (177)
Q Consensus 165 l~~~l~~~ 172 (177)
++++|.+.
T Consensus 154 l~~~l~~~ 161 (162)
T cd04106 154 LFEYLAEK 161 (162)
T ss_pred HHHHHHHh
Confidence 99999764
No 78
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.98 E-value=4e-31 Score=178.29 Aligned_cols=158 Identities=21% Similarity=0.298 Sum_probs=125.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
.+||+++|.+|||||||++++.++.+.....++.+.... .+..+ ...+.+||+||++++......+++.+|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 479999999999999999999988877776666654432 23333 47899999999999998888999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|++++.++..+..|+..+.... .++.|+++|+||+|+.+.. ..++...... ..++.++++||+++.|++++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~~~ 157 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFAK-----EHGLIFMETSAKTASNVEEA 157 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999998886543 3578999999999987432 2222222211 12347999999999999999
Q ss_pred HHHHHHHhhh
Q 030429 166 IDWLIKHSKT 175 (177)
Q Consensus 166 ~~~l~~~~~~ 175 (177)
|+++.+.+.+
T Consensus 158 ~~~~~~~~~~ 167 (168)
T cd01866 158 FINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 79
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.98 E-value=3.2e-31 Score=181.83 Aligned_cols=157 Identities=24% Similarity=0.371 Sum_probs=124.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
+||+++|++|||||||++++.++.+...+.++.+.... .+.. ..+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999887767777764433 3333 3477899999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
|+++++++..+..|+..+.... ....|+++|+||+|+.+... .++.. .+.. ...++++++||++|.|++++|
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~-~~~~----~~~~~~~evSa~~~~~i~~~f 154 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAK-SFCD----SLNIPFFETSAKQSINVEEAF 154 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHH-HHHH----HcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999888876542 24589999999999875332 12211 1111 123479999999999999999
Q ss_pred HHHHHHhhh
Q 030429 167 DWLIKHSKT 175 (177)
Q Consensus 167 ~~l~~~~~~ 175 (177)
++|.+.+.+
T Consensus 155 ~~l~~~~~~ 163 (188)
T cd04125 155 ILLVKLIIK 163 (188)
T ss_pred HHHHHHHHH
Confidence 999998765
No 80
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.98 E-value=1.3e-30 Score=178.61 Aligned_cols=157 Identities=20% Similarity=0.284 Sum_probs=121.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-EEe---CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTK---GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
+||+++|++|||||||++++.++.+...+.++.+..+.. +.. ..+.+.+|||||++++......++.++|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 589999999999999999999998887777776644332 322 3578999999999999998888999999999999
Q ss_pred eCCCCCCHHHHHH-HHHHHHcCCCCCCCcEEEEeeCCCccccc------CHHHHHHHhCcccccCCceeEEEeeecCCCC
Q 030429 89 DAADRDSVPIARS-ELHELLMKPSLSGIPLLVLGNKIDKSEAL------SKQALVDQLGLESITDREVCCYMISCKDSIN 161 (177)
Q Consensus 89 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~D~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 161 (177)
|++++.+++++.. |+..+... ..+.|+++|+||+|+.+.. ..++..+... .....+++++||++|.|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~----~~~~~~~~e~Sa~~~~~ 154 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAK----KQGAFAYLECSAKTMEN 154 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHH----HcCCcEEEEccCCCCCC
Confidence 9999999999865 55554332 2478999999999986532 1122111111 01112689999999999
Q ss_pred hHHHHHHHHHHhhh
Q 030429 162 IDAVIDWLIKHSKT 175 (177)
Q Consensus 162 i~~l~~~l~~~~~~ 175 (177)
++++|+.+.+.+.+
T Consensus 155 v~~~f~~l~~~~~~ 168 (187)
T cd04132 155 VEEVFDTAIEEALK 168 (187)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988764
No 81
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.5e-31 Score=178.27 Aligned_cols=161 Identities=24% Similarity=0.398 Sum_probs=136.8
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EEeCCEEEEEEecCCchhhHHhHHHHhcCC
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGV 81 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 81 (177)
+-...+.+||+++|++++|||-|+.|+....|.....+|++..+.+ ++.+.+..++|||+||++|+.....|++++
T Consensus 8 ~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgA 87 (222)
T KOG0087|consen 8 SEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGA 87 (222)
T ss_pred ccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccc
Confidence 3566788999999999999999999999999999999999966665 334558899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc-----cCHHHHHHHhCcccccCCceeEEEeee
Q 030429 82 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA-----LSKQALVDQLGLESITDREVCCYMISC 156 (177)
Q Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (177)
.++++|||++...+|+++..|+.++..+.. .++++++|+||+|+... ++...+.+..+ ..++++||
T Consensus 88 vGAllVYDITr~~Tfenv~rWL~ELRdhad-~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~--------l~f~EtSA 158 (222)
T KOG0087|consen 88 VGALLVYDITRRQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEG--------LFFLETSA 158 (222)
T ss_pred ceeEEEEechhHHHHHHHHHHHHHHHhcCC-CCeEEEEeecchhhhhccccchhhhHhHHHhcC--------ceEEEecc
Confidence 999999999999999999999999977654 68999999999999662 12223333332 36899999
Q ss_pred cCCCChHHHHHHHHHHhhh
Q 030429 157 KDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 157 ~~~~~i~~l~~~l~~~~~~ 175 (177)
.++.|+++.|+.+...+.+
T Consensus 159 l~~tNVe~aF~~~l~~I~~ 177 (222)
T KOG0087|consen 159 LDATNVEKAFERVLTEIYK 177 (222)
T ss_pred cccccHHHHHHHHHHHHHH
Confidence 9999999999998887653
No 82
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.7e-31 Score=166.27 Aligned_cols=158 Identities=25% Similarity=0.461 Sum_probs=135.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEE----eCCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
...+|++++|+..+|||||+.++++..+.....+|.++.+.... .+.+.+++|||.|+++++...-.++++++++|
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi 98 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence 45679999999999999999999999999999999998766532 34589999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC-----HHHHHHHhCcccccCCceeEEEeeecCCC
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-----KQALVDQLGLESITDREVCCYMISCKDSI 160 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (177)
++||+++.+++...+.|.-.+... .-.+.|+|+|+||||+.++.. ...+.++++. .+|++||+.+.
T Consensus 99 LmyDitNeeSf~svqdw~tqIkty-sw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGf--------efFEtSaK~Ni 169 (193)
T KOG0093|consen 99 LMYDITNEESFNSVQDWITQIKTY-SWDNAQVILVGNKCDMDSERVISHERGRQLADQLGF--------EFFETSAKENI 169 (193)
T ss_pred EEEecCCHHHHHHHHHHHHHheee-eccCceEEEEecccCCccceeeeHHHHHHHHHHhCh--------HHhhhcccccc
Confidence 999999999999999998887444 446789999999999976532 3456666665 58999999999
Q ss_pred ChHHHHHHHHHHhhhc
Q 030429 161 NIDAVIDWLIKHSKTA 176 (177)
Q Consensus 161 ~i~~l~~~l~~~~~~~ 176 (177)
|++++|+.++..+-++
T Consensus 170 nVk~~Fe~lv~~Ic~k 185 (193)
T KOG0093|consen 170 NVKQVFERLVDIICDK 185 (193)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 9999999999887643
No 83
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.97 E-value=4.7e-31 Score=177.38 Aligned_cols=156 Identities=22% Similarity=0.363 Sum_probs=124.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
.+||+++|++|||||||++++.++.+.....++.+.... .+..++ +.+++||+||+..+...+..+++.++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 479999999999999999999988887777777765433 344443 6789999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+... .++...... ..+.+++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l 156 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAE-----KNGLSFIETSALDGTNVEEA 156 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHH
Confidence 99999999999999888876543 23589999999999865322 222222221 12357999999999999999
Q ss_pred HHHHHHHh
Q 030429 166 IDWLIKHS 173 (177)
Q Consensus 166 ~~~l~~~~ 173 (177)
|+++.+.+
T Consensus 157 ~~~l~~~i 164 (165)
T cd01868 157 FKQLLTEI 164 (165)
T ss_pred HHHHHHHh
Confidence 99998765
No 84
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.97 E-value=3.3e-30 Score=182.89 Aligned_cols=157 Identities=20% Similarity=0.341 Sum_probs=124.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccc-eeEEEEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG-FNMRKVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
+||+++|.+|||||||+++++++.+...+.+|.+ .....+..+ .+.+++|||+|++.+..+...++..+|++++|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 4899999999999999999999988877777765 233334444 4788999999999998888888899999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCC--------CCCCCcEEEEeeCCCcccc--cCHHHHHHHhCcccccCCceeEEEeeecCC
Q 030429 90 AADRDSVPIARSELHELLMKP--------SLSGIPLLVLGNKIDKSEA--LSKQALVDQLGLESITDREVCCYMISCKDS 159 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 159 (177)
++++++|+++..|+..+.... ...+.|+++|+||+|+.+. ...++..+.++. ...+.++++||++|
T Consensus 81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~----~~~~~~~evSAktg 156 (247)
T cd04143 81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGG----DENCAYFEVSAKKN 156 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHh----cCCCEEEEEeCCCC
Confidence 999999999998888876431 2246899999999999752 233444443321 12457999999999
Q ss_pred CChHHHHHHHHHHh
Q 030429 160 INIDAVIDWLIKHS 173 (177)
Q Consensus 160 ~~i~~l~~~l~~~~ 173 (177)
.|++++|++|.+.+
T Consensus 157 ~gI~elf~~L~~~~ 170 (247)
T cd04143 157 SNLDEMFRALFSLA 170 (247)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999865
No 85
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=2.2e-30 Score=174.78 Aligned_cols=157 Identities=17% Similarity=0.198 Sum_probs=123.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeE--EEEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYS-EDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
++.+||+++|.+|||||||+++++++.+. ..+.+|.+... ..+..++ +.+.+||++|+..+......++.++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 57799999999999999999999998887 77777776443 2333333 7889999999999988888889999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc-----CHHHHHHHhCcccccCCceeEEEeeecCC
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL-----SKQALVDQLGLESITDREVCCYMISCKDS 159 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 159 (177)
++|+|++++.+++.+..|+..+... .+.|+++|+||+|+.+.. ..+++.+.++. ..++++||++|
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~ 151 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML---GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGL-------PPPLHFSSKLG 151 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC---CCCeEEEEEEcccccccccccccCHHHHHHHcCC-------CCCEEEEeccC
Confidence 9999999999998888877765322 368999999999986432 12333333321 13589999999
Q ss_pred CChHHHHHHHHHHhhhc
Q 030429 160 INIDAVIDWLIKHSKTA 176 (177)
Q Consensus 160 ~~i~~l~~~l~~~~~~~ 176 (177)
.|++++|+.+.+.+...
T Consensus 152 ~~v~~lf~~l~~~~~~~ 168 (169)
T cd01892 152 DSSNELFTKLATAAQYP 168 (169)
T ss_pred ccHHHHHHHHHHHhhCC
Confidence 99999999999987643
No 86
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.97 E-value=4.5e-31 Score=176.80 Aligned_cols=155 Identities=22% Similarity=0.343 Sum_probs=122.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
+||+++|++|||||||++++.++.+.....++.+.... .+..+ .+.+++||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999988887777776664433 23333 478899999999999998899999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
|+++++++..+..|+..+... ..++.|+++|+||+|+.+... .++....... .++.++++||+++.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~~~ 154 (161)
T cd04113 81 DITNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFAQE-----NGLLFLETSALTGENVEEAF 154 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHHHH-----cCCEEEEEECCCCCCHHHHH
Confidence 999999999999888876443 236789999999999865322 2222222211 12579999999999999999
Q ss_pred HHHHHHh
Q 030429 167 DWLIKHS 173 (177)
Q Consensus 167 ~~l~~~~ 173 (177)
+++.+.+
T Consensus 155 ~~~~~~~ 161 (161)
T cd04113 155 LKCARSI 161 (161)
T ss_pred HHHHHhC
Confidence 9998753
No 87
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.97 E-value=1.5e-30 Score=179.32 Aligned_cols=151 Identities=22% Similarity=0.418 Sum_probs=123.0
Q ss_pred EcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEE----eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCC
Q 030429 18 IGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADR 93 (177)
Q Consensus 18 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 93 (177)
+|.+|||||||+++++.+.+...+.+|.+....... ...+.+.+|||+|+++|..++..+++++|++++|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 699999999999999988888888888876654432 3468999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHHHh
Q 030429 94 DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 173 (177)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 173 (177)
.++..+..|+..+.... .+.|+++|+||+|+.......+..+ + .....+.+++|||++|.||+++|++|.+.+
T Consensus 81 ~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~~-~----~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSIT-F----HRKKNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred HHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHHH-H----HHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999888886643 4789999999999854321111111 1 122356899999999999999999999877
Q ss_pred hh
Q 030429 174 KT 175 (177)
Q Consensus 174 ~~ 175 (177)
.+
T Consensus 154 ~~ 155 (200)
T smart00176 154 IG 155 (200)
T ss_pred Hh
Confidence 54
No 88
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.1e-31 Score=166.63 Aligned_cols=161 Identities=22% Similarity=0.331 Sum_probs=133.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EEeCCEEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
...-+|++++|+.|+|||+|+.+|....+..+...|+++.+.. +-.+.+.+++|||+|+++|++..+.|++++.++
T Consensus 6 YDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGA 85 (214)
T KOG0086|consen 6 YDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 85 (214)
T ss_pred hhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence 4556899999999999999999999999999988888865554 345668999999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH--HHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK--QALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
++|||++++++|..+..|+.+.... ..+++-+++++||.|+.+..+. .+.. .+.......+.++|+++|+|+
T Consensus 86 lLVYD~TsrdsfnaLtnWL~DaR~l-As~nIvviL~GnKkDL~~~R~VtflEAs-----~FaqEnel~flETSa~TGeNV 159 (214)
T KOG0086|consen 86 LLVYDITSRDSFNALTNWLTDARTL-ASPNIVVILCGNKKDLDPEREVTFLEAS-----RFAQENELMFLETSALTGENV 159 (214)
T ss_pred EEEEeccchhhHHHHHHHHHHHHhh-CCCcEEEEEeCChhhcChhhhhhHHHHH-----hhhcccceeeeeecccccccH
Confidence 9999999999999999999998554 3367788999999999775432 2222 223334557899999999999
Q ss_pred HHHHHHHHHHhhh
Q 030429 163 DAVIDWLIKHSKT 175 (177)
Q Consensus 163 ~~l~~~l~~~~~~ 175 (177)
+|.|-...+.+..
T Consensus 160 EEaFl~c~~tIl~ 172 (214)
T KOG0086|consen 160 EEAFLKCARTILN 172 (214)
T ss_pred HHHHHHHHHHHHH
Confidence 9999888776643
No 89
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.97 E-value=9.5e-31 Score=175.16 Aligned_cols=156 Identities=21% Similarity=0.349 Sum_probs=122.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
+||+++|++|||||||++++.++.+.....++.+.... .+..++ +.+++||+||+..+...+..+++.+|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999988887766666654433 333333 67999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC-HHHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
|+++++++.....|+..+..... .+.|+++|+||+|+.+... ..+....+.. ...++++++||+++.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~~l~~ 155 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKAK----ELNAMFIETSAKAGHNVKELFR 155 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHHH----HhCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999888765432 3689999999999954321 1111122111 1235799999999999999999
Q ss_pred HHHHHh
Q 030429 168 WLIKHS 173 (177)
Q Consensus 168 ~l~~~~ 173 (177)
+|.+.+
T Consensus 156 ~i~~~l 161 (161)
T cd01861 156 KIASAL 161 (161)
T ss_pred HHHHhC
Confidence 998753
No 90
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.97 E-value=1.3e-30 Score=175.05 Aligned_cols=155 Identities=16% Similarity=0.303 Sum_probs=121.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCccceeEEE--EE---eCCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATG--GYSEDMIPTVGFNMRK--VT---KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~--~~~~~~~~t~~~~~~~--~~---~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
+||+++|++|||||||++++... .+...+.++.+..... +. ...+.+.+||+||+..+..++..++.++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999854 5667777777655432 22 34589999999999999998899999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHH-HHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQA-LVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
+|+|+++++++..+..|+..+.... ...|+++|+||+|+.+...... ..+.+. ...+.+++++||+++.|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~ 154 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFA----QANQLKFFKTSALRGVGYEE 154 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHH----HHcCCeEEEEeCCCCCChHH
Confidence 9999999999999888888776543 4689999999999865432211 111111 11124789999999999999
Q ss_pred HHHHHHHHh
Q 030429 165 VIDWLIKHS 173 (177)
Q Consensus 165 l~~~l~~~~ 173 (177)
+|+.+.+.+
T Consensus 155 l~~~l~~~~ 163 (164)
T cd04101 155 PFESLARAF 163 (164)
T ss_pred HHHHHHHHh
Confidence 999999875
No 91
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.97 E-value=3.6e-30 Score=172.72 Aligned_cols=156 Identities=27% Similarity=0.416 Sum_probs=124.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEE--eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
.+||+++|++|||||||++++.++.+.....++.+... ..+. ...+.+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999998887775666665332 2333 3457899999999999998888899999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|+++++++.....|+..+..... ...|+++++||+|+.+.. ..++..+.... ....++++||++|.|++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~l 154 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYADE-----NGLLFFETSAKTGENVNEL 154 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHHHH-----cCCEEEEEECCCCCCHHHH
Confidence 999999999999999888866543 678999999999987422 22222222211 1247999999999999999
Q ss_pred HHHHHHHh
Q 030429 166 IDWLIKHS 173 (177)
Q Consensus 166 ~~~l~~~~ 173 (177)
+++|.+.+
T Consensus 155 ~~~l~~~l 162 (163)
T cd01860 155 FTEIAKKL 162 (163)
T ss_pred HHHHHHHh
Confidence 99999875
No 92
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.97 E-value=1.8e-30 Score=174.25 Aligned_cols=157 Identities=25% Similarity=0.458 Sum_probs=125.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
+||+++|++|||||||++++.+..+.....++.+.... .+..++ +.+++||+||+..+......+++.+|++++|+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999988887776676665433 344444 78999999999999998899999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
|++++++++.+..|+..+..... ...|+++|+||+|+.+.. ..+...+... ..+++++++|+++|.|+++++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~~l~ 154 (164)
T smart00175 81 DITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEAFAE-----EHGLPFFETSAKTNTNVEEAF 154 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999888887765532 579999999999987532 2222222211 122469999999999999999
Q ss_pred HHHHHHhhh
Q 030429 167 DWLIKHSKT 175 (177)
Q Consensus 167 ~~l~~~~~~ 175 (177)
++|.+.+.+
T Consensus 155 ~~i~~~~~~ 163 (164)
T smart00175 155 EELAREILK 163 (164)
T ss_pred HHHHHHHhh
Confidence 999998765
No 93
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.97 E-value=1.2e-30 Score=179.83 Aligned_cols=160 Identities=20% Similarity=0.253 Sum_probs=118.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEeCC--EEEEEEecCCchhhH--------HhHHHHhcC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQRRFR--------TMWERYCRG 80 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~--------~~~~~~~~~ 80 (177)
+||+++|.+|||||||++++.++.+...+.++.+... ..+..++ +.+++|||||...+. .....+++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999888877777765333 2333444 788999999965431 112345788
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHcCC--CCCCCcEEEEeeCCCcccccCH-HHHHHHhCcccccCCceeEEEeeec
Q 030429 81 VSAILYVVDAADRDSVPIARSELHELLMKP--SLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCK 157 (177)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (177)
+|++++|||++++++++.+..|+..+.... ...++|+++|+||+|+.+.... .+..+.+.. ...++++++|||+
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~e~Sak 157 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVR---KSWKCGYLECSAK 157 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHH---HhcCCcEEEecCC
Confidence 999999999999999999998888776643 2357899999999999653211 111122111 1124579999999
Q ss_pred CCCChHHHHHHHHHHhhh
Q 030429 158 DSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 158 ~~~~i~~l~~~l~~~~~~ 175 (177)
+|.|++++|+.+.+.+..
T Consensus 158 ~g~~v~~lf~~i~~~~~~ 175 (198)
T cd04142 158 YNWHILLLFKELLISATT 175 (198)
T ss_pred CCCCHHHHHHHHHHHhhc
Confidence 999999999999987653
No 94
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.97 E-value=8.8e-30 Score=172.18 Aligned_cols=160 Identities=27% Similarity=0.437 Sum_probs=123.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
+||+++|++|||||||++++.++.+.....++.+.+.. .+.. ..+.+++||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999988887776666664432 2333 3467889999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCC---CCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 89 DAADRDSVPIARSELHELLMKPS---LSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
|++++.++++...|...+..... ..++|+++|+||+|+.+.. ..++....... ....+++++|+++|.|++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gv~ 156 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQS----NGNIPYFETSAKEAINVE 156 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHH----cCCceEEEEECCCCCCHH
Confidence 99999999888887776654432 2378999999999997421 22332222211 112479999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030429 164 AVIDWLIKHSKTA 176 (177)
Q Consensus 164 ~l~~~l~~~~~~~ 176 (177)
++++++.+.+.++
T Consensus 157 ~l~~~i~~~~~~~ 169 (172)
T cd01862 157 QAFETIARKALEQ 169 (172)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999877653
No 95
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=9.5e-32 Score=169.60 Aligned_cols=159 Identities=25% Similarity=0.410 Sum_probs=130.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
-++.+|+|++|+|||||+.+|....|...+..|++.++.. ++...+.+++||++|+++|+.+...++++.+++++|
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vV 87 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 87 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEE
Confidence 4678999999999999999999998998888888855543 335568999999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
||.++.+||.+...|+.++...+. ..|-++|+||.|.++..-...... .......++.+|++|+++++|++..|.
T Consensus 88 YDVTn~ESF~Nv~rWLeei~~ncd--sv~~vLVGNK~d~~~RrvV~t~dA---r~~A~~mgie~FETSaKe~~NvE~mF~ 162 (198)
T KOG0079|consen 88 YDVTNGESFNNVKRWLEEIRNNCD--SVPKVLVGNKNDDPERRVVDTEDA---RAFALQMGIELFETSAKENENVEAMFH 162 (198)
T ss_pred EECcchhhhHhHHHHHHHHHhcCc--cccceecccCCCCccceeeehHHH---HHHHHhcCchheehhhhhcccchHHHH
Confidence 999999999999999999977654 788999999999876532211100 111222344799999999999999999
Q ss_pred HHHHHhhh
Q 030429 168 WLIKHSKT 175 (177)
Q Consensus 168 ~l~~~~~~ 175 (177)
.|.+...+
T Consensus 163 cit~qvl~ 170 (198)
T KOG0079|consen 163 CITKQVLQ 170 (198)
T ss_pred HHHHHHHH
Confidence 99887654
No 96
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.97 E-value=4.6e-30 Score=171.90 Aligned_cols=155 Identities=26% Similarity=0.441 Sum_probs=123.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
+||+++|++|||||||++++.++.+.....++.+..... +.. ..+.+.+||+||++.+......+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999888766666666644332 233 3478999999999999888888999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc-CHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL-SKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
|++++.++.....|+..+.........|+++|+||+|+.... ..++..+... ...++++++||++|.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~~~~ 155 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFAR-----KHNMLFIETSAKTRDGVQQAFE 155 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHH-----HcCCEEEEEecCCCCCHHHHHH
Confidence 999999999999888877666555679999999999997432 2222222221 1234799999999999999999
Q ss_pred HHHHH
Q 030429 168 WLIKH 172 (177)
Q Consensus 168 ~l~~~ 172 (177)
.+.+.
T Consensus 156 ~~~~~ 160 (161)
T cd01863 156 ELVEK 160 (161)
T ss_pred HHHHh
Confidence 99875
No 97
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=3.5e-30 Score=173.40 Aligned_cols=160 Identities=20% Similarity=0.244 Sum_probs=116.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDA 90 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 90 (177)
+||+++|.+|||||||++++.++.+......+.+..... +....+.+.+||+||+..+...+..++..+|++++|+|+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 489999999999999999999888865544433322222 334568899999999988887777788999999999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHH---HHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 91 ADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ---ALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
+++.+++.+..+|...+.... .+.|+++|+||+|+.+..... +....+... . ....+++++||++|.|++++|+
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~-~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNE-F-REIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHH-H-hcccEEEEeccccccCHHHHHH
Confidence 999999998654443333222 378999999999997654321 111111000 0 0112689999999999999999
Q ss_pred HHHHHhhh
Q 030429 168 WLIKHSKT 175 (177)
Q Consensus 168 ~l~~~~~~ 175 (177)
.+.+.+.+
T Consensus 158 ~~~~~~~~ 165 (166)
T cd01893 158 YAQKAVLH 165 (166)
T ss_pred HHHHHhcC
Confidence 99987654
No 98
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.97 E-value=1.4e-30 Score=175.66 Aligned_cols=158 Identities=20% Similarity=0.306 Sum_probs=124.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEE--eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
.+||+++|.+|||||||++++.++.+...+.++.+.... ... ...+.+++||+||++++..++..+++.++++++|+
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 368999999999999999999988887776676653332 223 33478899999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
|++++++++....|...+.......+.|+++++||.|+.+... .++...... .....+++++||+++.|++++|
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~~~SA~~~~~i~~~f 156 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQ----QWGNVPFYETSARKRTNVDEVF 156 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHH----HcCCceEEEeeCCCCCCHHHHH
Confidence 9999999999998888876644446799999999999865332 122111111 1122579999999999999999
Q ss_pred HHHHHHh
Q 030429 167 DWLIKHS 173 (177)
Q Consensus 167 ~~l~~~~ 173 (177)
+++...+
T Consensus 157 ~~i~~~~ 163 (168)
T cd04177 157 IDLVRQI 163 (168)
T ss_pred HHHHHHH
Confidence 9998765
No 99
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.97 E-value=2.2e-30 Score=178.41 Aligned_cols=156 Identities=23% Similarity=0.329 Sum_probs=120.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEE--EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSE-DMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
+||+++|++|||||||+++++++.+.. .+.+|.+..+. .+..+ .+.+.+||+||++++......++.++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999888764 46666664432 33433 36778999999999988888889999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC------HHHHHHHhCcccccCCceeEEEeeecCCCC
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS------KQALVDQLGLESITDREVCCYMISCKDSIN 161 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 161 (177)
+|++++.+++....|+..+... ..+.|+++|+||+|+.+... ..+..+ +. .....+++++||++|.|
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~-~~----~~~~~~~~~~Sa~~~~g 153 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQD-FA----DEIKAQHFETSSKTGQN 153 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHH-HH----HHcCCeEEEEeCCCCCC
Confidence 9999999999988888777553 23689999999999864321 111111 11 11234789999999999
Q ss_pred hHHHHHHHHHHhhh
Q 030429 162 IDAVIDWLIKHSKT 175 (177)
Q Consensus 162 i~~l~~~l~~~~~~ 175 (177)
++++|+++.+.+.+
T Consensus 154 v~~l~~~i~~~~~~ 167 (193)
T cd04118 154 VDELFQKVAEDFVS 167 (193)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987754
No 100
>PLN03108 Rab family protein; Provisional
Probab=99.97 E-value=3.2e-30 Score=179.53 Aligned_cols=160 Identities=19% Similarity=0.283 Sum_probs=126.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
...+||+++|++|||||||++++++..+...+.++.+.... .+.. ..+.+.+||++|++.+...+..++..+|+++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 45689999999999999999999988887777777765433 2333 3467899999999999998899999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
+|+|+++++++..+..|+..+.... ....|+++|+||+|+.+.. ..++..+... ..+++++++||+++.|++
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~v~ 157 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-----EHGLIFMEASAKTAQNVE 157 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHH
Confidence 9999999999999988887765432 2578999999999986532 2222222221 123479999999999999
Q ss_pred HHHHHHHHHhhh
Q 030429 164 AVIDWLIKHSKT 175 (177)
Q Consensus 164 ~l~~~l~~~~~~ 175 (177)
++|+++.+.+.+
T Consensus 158 e~f~~l~~~~~~ 169 (210)
T PLN03108 158 EAFIKTAAKIYK 169 (210)
T ss_pred HHHHHHHHHHHH
Confidence 999999987654
No 101
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=1.1e-29 Score=170.41 Aligned_cols=158 Identities=22% Similarity=0.322 Sum_probs=125.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
+||+++|++|||||||++++.+..+.....++....... .....+.+.+||+||+..+......+++.++++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 589999999999999999999888777766665533322 22345789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--cCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA--LSKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
++++.++.....|+..+.......+.|+++|+||+|+.+. ....+..+.... .+.+++++||++|.|++++|+
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~~ 155 (164)
T cd04139 81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQ-----WGVPYVETSAKTRQNVEKAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHH-----hCCeEEEeeCCCCCCHHHHHH
Confidence 9999999999999888877655567999999999999762 122222221111 123799999999999999999
Q ss_pred HHHHHhhh
Q 030429 168 WLIKHSKT 175 (177)
Q Consensus 168 ~l~~~~~~ 175 (177)
.+.+.+.+
T Consensus 156 ~l~~~~~~ 163 (164)
T cd04139 156 DLVREIRQ 163 (164)
T ss_pred HHHHHHHh
Confidence 99988764
No 102
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.97 E-value=3.7e-30 Score=174.42 Aligned_cols=159 Identities=23% Similarity=0.276 Sum_probs=117.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCC
Q 030429 15 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAA 91 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 91 (177)
|+++|++|||||||++++.++.+...+.++...... .+.. ..+.+.+|||||++.+......++.++|++++|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 589999999999999999998887776666553332 2323 3467999999999999888888999999999999999
Q ss_pred CCCCHHHHHH-HHHHHHcCCCCCCCcEEEEeeCCCcccccCH-HHHHHH--------hCccccc-CCceeEEEeeecCCC
Q 030429 92 DRDSVPIARS-ELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQ--------LGLESIT-DREVCCYMISCKDSI 160 (177)
Q Consensus 92 ~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~--------~~~~~~~-~~~~~~~~~Sa~~~~ 160 (177)
++++++.+.. |+..+.... ++.|+++|+||+|+.+.... .++.+. ....... .....++++||++|.
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFC--PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhC--CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999864 666554432 47899999999998653211 000000 0000011 112378999999999
Q ss_pred ChHHHHHHHHHHhhh
Q 030429 161 NIDAVIDWLIKHSKT 175 (177)
Q Consensus 161 ~i~~l~~~l~~~~~~ 175 (177)
|++++|+.+.+.+.+
T Consensus 159 ~v~~lf~~l~~~~~~ 173 (174)
T smart00174 159 GVREVFEEAIRAALN 173 (174)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999987643
No 103
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.97 E-value=9.3e-30 Score=170.57 Aligned_cols=155 Identities=29% Similarity=0.488 Sum_probs=127.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
||+++|++|||||||+++|.++.+...+.+|.+..... +.. ..+.+++||++|++++......++.++|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999988888887655544 333 45789999999999999888889999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
+++++++..+..|+..+..... ...|+++++||.|+.+.. ..++..+.... . +.+++++||+++.|+.++|.
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~----~-~~~~~e~Sa~~~~~v~~~f~ 154 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAKE----L-GVPYFEVSAKNGENVKEIFQ 154 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHHH----T-TSEEEEEBTTTTTTHHHHHH
T ss_pred cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHHHH----h-CCEEEEEECCCCCCHHHHHH
Confidence 9999999999999988866544 468999999999988632 22222222111 1 14799999999999999999
Q ss_pred HHHHHhh
Q 030429 168 WLIKHSK 174 (177)
Q Consensus 168 ~l~~~~~ 174 (177)
.+++.+.
T Consensus 155 ~~i~~i~ 161 (162)
T PF00071_consen 155 ELIRKIL 161 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998874
No 104
>PLN03118 Rab family protein; Provisional
Probab=99.97 E-value=6e-30 Score=178.44 Aligned_cols=161 Identities=22% Similarity=0.394 Sum_probs=122.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
....+||+++|++|||||||+++|.++.+. ...++.+... ..+..+ .+.+.+|||||++++...+..+++.+|++
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 89 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGI 89 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 445789999999999999999999987664 4455655443 233333 47889999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcC-CCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCC
Q 030429 85 LYVVDAADRDSVPIARSELHELLMK-PSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSIN 161 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 161 (177)
++|+|++++++++.+...|...... ......|+++|+||+|+..... .++..+... ....+++++||+++.|
T Consensus 90 vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~-----~~~~~~~e~SAk~~~~ 164 (211)
T PLN03118 90 ILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAK-----EHGCLFLECSAKTREN 164 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH-----HcCCEEEEEeCCCCCC
Confidence 9999999999999997755544332 2234679999999999865422 222222111 1234799999999999
Q ss_pred hHHHHHHHHHHhhh
Q 030429 162 IDAVIDWLIKHSKT 175 (177)
Q Consensus 162 i~~l~~~l~~~~~~ 175 (177)
++++|++|.+.+.+
T Consensus 165 v~~l~~~l~~~~~~ 178 (211)
T PLN03118 165 VEQCFEELALKIME 178 (211)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988754
No 105
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=9.7e-30 Score=172.39 Aligned_cols=160 Identities=20% Similarity=0.250 Sum_probs=117.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM-RKVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
+||+++|++|+|||||++++.++.+...+.++..... ..+..+ .+.+.+||+||+..+......+++.+|++++|+|
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 5899999999999999999998888766666654222 223333 4668899999999998888888999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCc----------ccccCCceeEEEeeecCC
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGL----------ESITDREVCCYMISCKDS 159 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~Sa~~~ 159 (177)
++++.+++.....|...+... ..+.|+++|+||+|+.+............. ........+++++||++|
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 159 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ 159 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence 999999998865444333332 467999999999998653221111110000 000112236899999999
Q ss_pred CChHHHHHHHHHHh
Q 030429 160 INIDAVIDWLIKHS 173 (177)
Q Consensus 160 ~~i~~l~~~l~~~~ 173 (177)
.|++++|+.+++.+
T Consensus 160 ~gi~~~f~~~~~~~ 173 (174)
T cd04135 160 KGLKTVFDEAILAI 173 (174)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998865
No 106
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=4.5e-30 Score=179.95 Aligned_cols=155 Identities=19% Similarity=0.198 Sum_probs=116.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccc--eeEEEEE--eCCEEEEEEecCCchhhHHhHHHHhc-CCCEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYS-EDMIPTVG--FNMRKVT--KGNVTIKLWDLGGQRRFRTMWERYCR-GVSAILY 86 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~t~~--~~~~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~-~~d~~i~ 86 (177)
+||+++|++|||||||++++..+.+. ..+.++.+ .....+. .....+.+||+||++. .....++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999877775 55555553 2233333 3557899999999872 22334556 8999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH--HHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK--QALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
|||++++.+++....|+..+.......+.|+++|+||+|+.+.... ++. +.+. ....++++++||+++.|+++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~-~~~a----~~~~~~~~e~SA~~~~gv~~ 153 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEG-RACA----VVFDCKFIETSAGLQHNVDE 153 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHH-HHHH----HHcCCeEEEecCCCCCCHHH
Confidence 9999999999999999888866544457999999999998654321 111 1111 11234789999999999999
Q ss_pred HHHHHHHHhh
Q 030429 165 VIDWLIKHSK 174 (177)
Q Consensus 165 l~~~l~~~~~ 174 (177)
+|+++.+.+.
T Consensus 154 l~~~l~~~~~ 163 (221)
T cd04148 154 LLEGIVRQIR 163 (221)
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 107
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=1.8e-29 Score=174.46 Aligned_cols=157 Identities=22% Similarity=0.290 Sum_probs=123.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccc-eeEEEEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG-FNMRKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDA 90 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 90 (177)
||+++|.+|||||||+++++++.+...+.++.. .....+..++ +.+++||+||+..+......++.++|++++|+|+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 689999999999999999998888776666553 3333344444 7899999999999988888899999999999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC---HHHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 91 ADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS---KQALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
+++.+++....|+..+.......++|+++|+||+|+.+... .+...+... .....+++++||++|.|++++|+
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~g~gv~~l~~ 156 (198)
T cd04147 81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE----LDWNCGFVETSAKDNENVLEVFK 156 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH----hhcCCcEEEecCCCCCCHHHHHH
Confidence 99999999999888887765556799999999999865321 112111111 11224689999999999999999
Q ss_pred HHHHHhh
Q 030429 168 WLIKHSK 174 (177)
Q Consensus 168 ~l~~~~~ 174 (177)
++.+.+.
T Consensus 157 ~l~~~~~ 163 (198)
T cd04147 157 ELLRQAN 163 (198)
T ss_pred HHHHHhh
Confidence 9998764
No 108
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.97 E-value=2.4e-30 Score=173.95 Aligned_cols=156 Identities=19% Similarity=0.247 Sum_probs=116.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EE--EEeCCEEEEEEecCCchh-hHHhHHHHhcCCCEEEEEEe
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM-RK--VTKGNVTIKLWDLGGQRR-FRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~--~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~d~~i~v~d 89 (177)
||+++|++|||||||+++++++.+...+.++..... .. ++...+.+++||+||+.. +......+++.+|++++|+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 589999999999999999998777666666553222 22 333456789999999885 34456678899999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCC-CCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCC-CChHHH
Q 030429 90 AADRDSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDS-INIDAV 165 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~~i~~l 165 (177)
++++.+++.+..|+..+..... ..+.|+++|+||+|+.+.. ..++..+... ..+.+++++||++| .|++++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~~~~v~~~ 155 (165)
T cd04146 81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLAS-----ELGCLFFEVSAAEDYDGVHSV 155 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHH-----HcCCEEEEeCCCCCchhHHHH
Confidence 9999999999888877655432 3579999999999986432 1222211111 11247999999999 599999
Q ss_pred HHHHHHHhh
Q 030429 166 IDWLIKHSK 174 (177)
Q Consensus 166 ~~~l~~~~~ 174 (177)
|+.+.+.+.
T Consensus 156 f~~l~~~~~ 164 (165)
T cd04146 156 FHELCREVR 164 (165)
T ss_pred HHHHHHHHh
Confidence 999998765
No 109
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.8e-29 Score=157.00 Aligned_cols=169 Identities=36% Similarity=0.640 Sum_probs=156.5
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
.+...++++|+.+|..++||||++..++-+ -.....+|.++.+..+.++++.|++||++|+++.+..|+.|+.+..++|
T Consensus 11 k~f~~KE~~ilmlGLd~aGKTtiLyKLkl~-~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglI 89 (180)
T KOG0071|consen 11 KIFGNKEMRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 89 (180)
T ss_pred HHhCcccceEEEEecccCCceehhhHHhcC-CCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEE
Confidence 456778999999999999999999999843 3445668999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|+|.++.+..++.+..+..++........|+++..||.|++....++++...+++.....+.+.+.++|+.+|.|+.|-
T Consensus 90 FV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eg 169 (180)
T KOG0071|consen 90 FVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEG 169 (180)
T ss_pred EEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhHHHH
Confidence 99999999999999999999999988888999999999999999999999999999888889999999999999999999
Q ss_pred HHHHHHHhhh
Q 030429 166 IDWLIKHSKT 175 (177)
Q Consensus 166 ~~~l~~~~~~ 175 (177)
|.||...++.
T Consensus 170 lswlsnn~~~ 179 (180)
T KOG0071|consen 170 LSWLSNNLKE 179 (180)
T ss_pred HHHHHhhccC
Confidence 9999988764
No 110
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.97 E-value=8.4e-30 Score=170.54 Aligned_cols=155 Identities=25% Similarity=0.353 Sum_probs=120.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEE--eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
+||+++|++|||||||+++++++.+.....++..... ..+. ...+.+.+||+||+..+...+..+++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 5899999999999999999998877665555543332 2233 23467999999999999998888999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
|+++++++.....|+..+..... .+.|+++|+||+|+..... .++..+... ..+.+++++|++++.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~gi~~~~ 154 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYAK-----SVGAKHFETSAKTGKGIEELF 154 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999888877755533 3789999999999875322 222222211 123468999999999999999
Q ss_pred HHHHHHh
Q 030429 167 DWLIKHS 173 (177)
Q Consensus 167 ~~l~~~~ 173 (177)
+++.+.+
T Consensus 155 ~~l~~~~ 161 (162)
T cd04123 155 LSLAKRM 161 (162)
T ss_pred HHHHHHh
Confidence 9998865
No 111
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=3.4e-29 Score=168.96 Aligned_cols=159 Identities=24% Similarity=0.364 Sum_probs=122.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
+...+|+++|++|||||||++++.++.+.....++.+... ..+...+ +.+.+||+||+..+......++..+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 4568999999999999999999998877776666665333 2334444 67899999999999988889999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH-HHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
+|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+..+. .+..+.+.. ....+++++||++|.|+++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~----~~~~~~~~~Sa~~~~gv~~ 159 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEEFSD----AQDMYYLETSAKESDNVEK 159 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHHH----HcCCeEEEeeCCCCCCHHH
Confidence 999999998998888887766433 2246899999999998754322 122222211 1124789999999999999
Q ss_pred HHHHHHHHh
Q 030429 165 VIDWLIKHS 173 (177)
Q Consensus 165 l~~~l~~~~ 173 (177)
+|+.|.+.+
T Consensus 160 l~~~i~~~~ 168 (169)
T cd04114 160 LFLDLACRL 168 (169)
T ss_pred HHHHHHHHh
Confidence 999998764
No 112
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=7.1e-31 Score=167.53 Aligned_cols=164 Identities=27% Similarity=0.357 Sum_probs=131.1
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccc--eeEEEE--EeCCEEEEEEecCCchhhHHhHHHHhcCCCE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKV--TKGNVTIKLWDLGGQRRFRTMWERYCRGVSA 83 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~--~~~~~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (177)
....++|++++|+.-+|||||+-+++...|.....+|.. +....+ .....++++|||+|+++|+.+-+-|++++++
T Consensus 9 g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnG 88 (218)
T KOG0088|consen 9 GKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNG 88 (218)
T ss_pred CCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCc
Confidence 455679999999999999999999999999888887665 333333 3455789999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 84 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
+++|||++|+++|+..+.|..++..... ..+-+++|+||+|+.++... ..+-........++.++++||+++.||.
T Consensus 89 alLVyDITDrdSFqKVKnWV~Elr~mlG-nei~l~IVGNKiDLEeeR~V---t~qeAe~YAesvGA~y~eTSAk~N~Gi~ 164 (218)
T KOG0088|consen 89 ALLVYDITDRDSFQKVKNWVLELRTMLG-NEIELLIVGNKIDLEEERQV---TRQEAEAYAESVGALYMETSAKDNVGIS 164 (218)
T ss_pred eEEEEeccchHHHHHHHHHHHHHHHHhC-CeeEEEEecCcccHHHhhhh---hHHHHHHHHHhhchhheecccccccCHH
Confidence 9999999999999999999999966543 45788999999999764322 1111111122334469999999999999
Q ss_pred HHHHHHHHHhhh
Q 030429 164 AVIDWLIKHSKT 175 (177)
Q Consensus 164 ~l~~~l~~~~~~ 175 (177)
++|+.|.....+
T Consensus 165 elFe~Lt~~MiE 176 (218)
T KOG0088|consen 165 ELFESLTAKMIE 176 (218)
T ss_pred HHHHHHHHHHHH
Confidence 999999886543
No 113
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=2.6e-29 Score=170.40 Aligned_cols=159 Identities=19% Similarity=0.256 Sum_probs=117.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
.||+++|++|||||||++++.++.+...+.++...... .+.. ..+.+.+|||||++.+......++.++|++++|+|
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~ 81 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 81 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence 58999999999999999999998887777776654332 2333 44688999999999988877778899999999999
Q ss_pred CCCCCCHHHHHH-HHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcc----------cccCCceeEEEeeecC
Q 030429 90 AADRDSVPIARS-ELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLE----------SITDREVCCYMISCKD 158 (177)
Q Consensus 90 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~Sa~~ 158 (177)
++++++++.... |...+... ..+.|+++|+||+|+.+.....+........ .......++++|||++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 82 IDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999999988865 44444332 2478999999999986542211111110000 0011234799999999
Q ss_pred CCChHHHHHHHHHHh
Q 030429 159 SINIDAVIDWLIKHS 173 (177)
Q Consensus 159 ~~~i~~l~~~l~~~~ 173 (177)
|.|++++|++|.+.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998765
No 114
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=4.5e-30 Score=173.93 Aligned_cols=153 Identities=21% Similarity=0.250 Sum_probs=114.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM-RKVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
+|++++|++|||||||+.++.++.+...+.+|..... ..+.. ..+.+.+||+||+.++...+..+++++|++++|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 5899999999999999999998888877777653211 12233 34788999999999998888888999999999999
Q ss_pred CCCCCCHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCcccccC--------------HHHHHHHhCcccccCCceeEEEe
Q 030429 90 AADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEALS--------------KQALVDQLGLESITDREVCCYMI 154 (177)
Q Consensus 90 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~ 154 (177)
++++++++.+. .|+..+... ..+.|+++|+||+|+.+... .++..+ +.. ......++++
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~a~---~~~~~~~~e~ 154 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKA-LAE---KIGACEYIEC 154 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHH-HHH---HhCCCeEEEE
Confidence 99999999885 466555432 24689999999999864321 111111 110 1112379999
Q ss_pred eecCCCChHHHHHHHHH
Q 030429 155 SCKDSINIDAVIDWLIK 171 (177)
Q Consensus 155 Sa~~~~~i~~l~~~l~~ 171 (177)
||++|.|++++|+.+.-
T Consensus 155 Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 155 SALTQKNLKEVFDTAIL 171 (173)
T ss_pred eCCCCCCHHHHHHHHHh
Confidence 99999999999998764
No 115
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=1.1e-29 Score=162.75 Aligned_cols=162 Identities=24% Similarity=0.367 Sum_probs=132.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EE-eCCEEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VT-KGNVTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~----~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
...++++++|+.-+|||||++.+.++.+..-..||.+.++.. +. ...+.+++|||+|+++|++....|++++-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 456899999999999999999999999999999999876553 22 2347899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCC-cEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGI-PLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
++|||+++.++|+....|+.+.......+.+ -+++|++|+|+...... ..+-+.......++.|+++||++|.|++
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqV---t~EEaEklAa~hgM~FVETSak~g~NVe 162 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQV---TAEEAEKLAASHGMAFVETSAKNGCNVE 162 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccc---cHHHHHHHHHhcCceEEEecccCCCcHH
Confidence 9999999999999999999998777665554 46888999999754221 1111111222334579999999999999
Q ss_pred HHHHHHHHHhh
Q 030429 164 AVIDWLIKHSK 174 (177)
Q Consensus 164 ~l~~~l~~~~~ 174 (177)
+.|..|.+.+.
T Consensus 163 EAF~mlaqeIf 173 (213)
T KOG0091|consen 163 EAFDMLAQEIF 173 (213)
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 116
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=1.5e-28 Score=163.60 Aligned_cols=152 Identities=28% Similarity=0.472 Sum_probs=122.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEE--e--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT--K--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~--~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
+||+++|++|||||||++++.+..+.....++.+....... . ....+.+||+||+..+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999988888777777776555433 2 3588999999999999998999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc--cccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS--EALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
|+++++++.....|+..+..... ...|+++++||+|+. .....++..+.... ...+++++||+++.|+++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~~~~ 154 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAP-ENIPIILVGNKIDLEDQRQVSTEEAQQFAKE-----NGLLFFETSAKTGENVEELF 154 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEEcccccccccccHHHHHHHHHH-----cCCeEEEEecCCCCCHHHHH
Confidence 99999899999988887766532 468999999999996 22223333322221 34579999999999999999
Q ss_pred HHHH
Q 030429 167 DWLI 170 (177)
Q Consensus 167 ~~l~ 170 (177)
++|.
T Consensus 155 ~~i~ 158 (159)
T cd00154 155 QSLA 158 (159)
T ss_pred HHHh
Confidence 9986
No 117
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=1.1e-29 Score=174.67 Aligned_cols=157 Identities=19% Similarity=0.222 Sum_probs=109.9
Q ss_pred eeEEEEEcCCCCCHHHHHH-HHhcCC-----CCCCCCCccce-eEE------------EEEeCCEEEEEEecCCchhhHH
Q 030429 12 EMELSLIGLQNAGKTSLVN-TIATGG-----YSEDMIPTVGF-NMR------------KVTKGNVTIKLWDLGGQRRFRT 72 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~-~l~~~~-----~~~~~~~t~~~-~~~------------~~~~~~~~~~~~D~~g~~~~~~ 72 (177)
.+||+++|.+|||||||+. ++.++. +...+.+|.+. ... .+....+.+++|||+|++..
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4799999999999999995 665443 34455566641 111 23344689999999998753
Q ss_pred hHHHHhcCCCEEEEEEeCCCCCCHHHHHH-HHHHHHcCCCCCCCcEEEEeeCCCcccccC----------------HHHH
Q 030429 73 MWERYCRGVSAILYVVDAADRDSVPIARS-ELHELLMKPSLSGIPLLVLGNKIDKSEALS----------------KQAL 135 (177)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~----------------~~~~ 135 (177)
....+++++|++++|||++++.+++++.. |+..+.... .+.|+++|+||+|+.+... ...+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 34567899999999999999999999974 666654432 4689999999999864200 0000
Q ss_pred HHHhCcccccCCceeEEEeeecCCCChHHHHHHHHHH
Q 030429 136 VDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 172 (177)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 172 (177)
....+.......+++|++|||++|.|++++|+.++++
T Consensus 158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 1111111112233579999999999999999999875
No 118
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=1.4e-28 Score=167.61 Aligned_cols=159 Identities=17% Similarity=0.330 Sum_probs=125.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcccee-EEEEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN-MRKVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
.||+++|.+|||||||++++.++.+.....++.... ......+ .+.+++||+||+.++...+..++..++++++|+|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 589999999999999999999888776666665432 2333333 4678999999999999888889999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
.++..+++....++..+.......+.|+++|+||+|+..... .++...... ....+++++||+++.|++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l~~ 156 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAE-----SWGAAFLESSARENENVEEAFE 156 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999999887765556789999999999864322 112111111 1124789999999999999999
Q ss_pred HHHHHhhhc
Q 030429 168 WLIKHSKTA 176 (177)
Q Consensus 168 ~l~~~~~~~ 176 (177)
++.+.+.+.
T Consensus 157 ~l~~~~~~~ 165 (180)
T cd04137 157 LLIEEIEKV 165 (180)
T ss_pred HHHHHHHHh
Confidence 999887653
No 119
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.96 E-value=1.6e-28 Score=164.04 Aligned_cols=155 Identities=25% Similarity=0.356 Sum_probs=122.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDA 90 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 90 (177)
||+++|++|||||||++++.+..+.....++.+.... .+..+ .+.+++||+||+..+......+++.+|++++|+|+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 6899999999999999999988777776666552222 23344 47899999999999999888999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHH
Q 030429 91 ADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDW 168 (177)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 168 (177)
++++++.+...++..+.........|+++|+||+|+.+.. ..++..+..... ..+++++|++++.|+++++++
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~S~~~~~~i~~l~~~ 155 (160)
T cd00876 81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEW-----GCPFIETSAKDNINIDEVFKL 155 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHc-----CCcEEEeccCCCCCHHHHHHH
Confidence 9999999999999888776555679999999999987632 122222222111 147999999999999999999
Q ss_pred HHHHh
Q 030429 169 LIKHS 173 (177)
Q Consensus 169 l~~~~ 173 (177)
|.+.+
T Consensus 156 l~~~i 160 (160)
T cd00876 156 LVREI 160 (160)
T ss_pred HHhhC
Confidence 98753
No 120
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.96 E-value=8.9e-29 Score=167.11 Aligned_cols=158 Identities=18% Similarity=0.280 Sum_probs=114.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE---EEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
+||+++|++|||||||+++|.++.+...+.++...... ......+.+++||+||+..+.......++.+|++++|+|
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999988875555554432222 122345789999999999887777777889999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHH--------HHHhCc-ccccCCceeEEEeeecCCC
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQAL--------VDQLGL-ESITDREVCCYMISCKDSI 160 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~Sa~~~~ 160 (177)
++++.++......|........ .+.|+++|+||+|+.+....... ...... ........+++++||++|.
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 9998888887664444433322 37999999999998765432110 000000 1111122379999999999
Q ss_pred ChHHHHHHHHH
Q 030429 161 NIDAVIDWLIK 171 (177)
Q Consensus 161 ~i~~l~~~l~~ 171 (177)
|+++++++|.+
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999999875
No 121
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=1e-27 Score=167.68 Aligned_cols=161 Identities=23% Similarity=0.415 Sum_probs=129.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEE----eCCEEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
....+||+++|++|||||||++++..+.+...+.+|.+....... .+.+.+.+||++|+..+......++.+++++
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~ 85 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCA 85 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEE
Confidence 345689999999999999999999888888888888886665533 3568999999999999988888889999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
++|+|++++.++..+..|+..+.... .+.|+++++||+|+.+.....+..+.. ...++.++++||++|.|+++
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~~ 158 (215)
T PTZ00132 86 IIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQITFH-----RKKNLQYYDISAKSNYNFEK 158 (215)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999998888876542 468999999999986543222222211 12334789999999999999
Q ss_pred HHHHHHHHhhhc
Q 030429 165 VIDWLIKHSKTA 176 (177)
Q Consensus 165 l~~~l~~~~~~~ 176 (177)
.|.+|.+.+...
T Consensus 159 ~f~~ia~~l~~~ 170 (215)
T PTZ00132 159 PFLWLARRLTND 170 (215)
T ss_pred HHHHHHHHHhhc
Confidence 999999887653
No 122
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.96 E-value=8.5e-28 Score=164.70 Aligned_cols=157 Identities=21% Similarity=0.250 Sum_probs=115.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
.||+++|++|+|||||++++..+.+...+.++...... .+..+ .+.+.+||++|+..+......++..+|++++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~ 81 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA 81 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999987776665555443322 22323 4678899999998887766667889999999999
Q ss_pred CCCCCCHHHHHH-HHHHHHcCCCCCCCcEEEEeeCCCcccccC------------HHHHHHHhCcccccCCceeEEEeee
Q 030429 90 AADRDSVPIARS-ELHELLMKPSLSGIPLLVLGNKIDKSEALS------------KQALVDQLGLESITDREVCCYMISC 156 (177)
Q Consensus 90 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (177)
++++++++.+.. |+..+.... ++.|+++|+||+|+.+... .++. ..+.. .....++++|||
T Consensus 82 i~~~~s~~~~~~~~~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~e~Sa 155 (187)
T cd04129 82 VDTPDSLENVRTKWIEEVRRYC--PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQG-KRVAK---EIGAKKYMECSA 155 (187)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhhhCcccccccccCCcCCHHHH-HHHHH---HhCCcEEEEccC
Confidence 999999999875 555554332 4699999999999854211 0111 11110 011236999999
Q ss_pred cCCCChHHHHHHHHHHhhh
Q 030429 157 KDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 157 ~~~~~i~~l~~~l~~~~~~ 175 (177)
++|.|++++|+++.+.+..
T Consensus 156 ~~~~~v~~~f~~l~~~~~~ 174 (187)
T cd04129 156 LTGEGVDDVFEAATRAALL 174 (187)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999987654
No 123
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.1e-29 Score=162.19 Aligned_cols=156 Identities=23% Similarity=0.398 Sum_probs=133.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEE----e---------CCEEEEEEecCCchhhHHhHHHH
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----K---------GNVTIKLWDLGGQRRFRTMWERY 77 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~----~---------~~~~~~~~D~~g~~~~~~~~~~~ 77 (177)
.-+|.+.+|++|+||||++.++..+.|.+...+|.++++.+.. . ..+.+++|||+|+++|+++...+
T Consensus 8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAF 87 (219)
T KOG0081|consen 8 YLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAF 87 (219)
T ss_pred HHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHH
Confidence 4468889999999999999999999999999999998887622 1 13789999999999999999999
Q ss_pred hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH-----HHHHHHhCcccccCCceeEE
Q 030429 78 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-----QALVDQLGLESITDREVCCY 152 (177)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 152 (177)
++++-.+++++|+++..||.+.+.|+..+..+....+.-+++++||+|+.+.... ..+.+++ .+|||
T Consensus 88 fRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~ky--------glPYf 159 (219)
T KOG0081|consen 88 FRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKY--------GLPYF 159 (219)
T ss_pred HHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHh--------CCCee
Confidence 9999999999999999999999999999988887788889999999999765332 2233333 34899
Q ss_pred EeeecCCCChHHHHHHHHHHhh
Q 030429 153 MISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 153 ~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
++||-+|.|+++..+.|...+-
T Consensus 160 ETSA~tg~Nv~kave~LldlvM 181 (219)
T KOG0081|consen 160 ETSACTGTNVEKAVELLLDLVM 181 (219)
T ss_pred eeccccCcCHHHHHHHHHHHHH
Confidence 9999999999998888877654
No 124
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.96 E-value=4.6e-27 Score=158.35 Aligned_cols=153 Identities=18% Similarity=0.132 Sum_probs=107.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEeCCEEEEEEecCCchhh----H-----HhHHHHhcCCC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGNVTIKLWDLGGQRRF----R-----TMWERYCRGVS 82 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~----~-----~~~~~~~~~~d 82 (177)
+|+++|.+|+|||||++++.+..+... ...|..........++..+.+|||||+... + .........+|
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d 81 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRA 81 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccC
Confidence 799999999999999999998766432 223444555555667789999999997321 0 11111123368
Q ss_pred EEEEEEeCCCCCCH--HHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCC
Q 030429 83 AILYVVDAADRDSV--PIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSI 160 (177)
Q Consensus 83 ~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (177)
++++|+|+++..++ +....|+..+.... .+.|+++|+||+|+.+.....+ .+.+. .....+++++||++|.
T Consensus 82 ~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~-~~~~~----~~~~~~~~~~Sa~~~~ 154 (168)
T cd01897 82 AVLFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNKIDLLTFEDLSE-IEEEE----ELEGEEVLKISTLTEE 154 (168)
T ss_pred cEEEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEccccCchhhHHH-HHHhh----hhccCceEEEEecccC
Confidence 99999999987653 55556666554332 3789999999999976543333 11211 2234579999999999
Q ss_pred ChHHHHHHHHHHh
Q 030429 161 NIDAVIDWLIKHS 173 (177)
Q Consensus 161 ~i~~l~~~l~~~~ 173 (177)
|++++++++.+.+
T Consensus 155 gi~~l~~~l~~~~ 167 (168)
T cd01897 155 GVDEVKNKACELL 167 (168)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999999876
No 125
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.95 E-value=6.1e-27 Score=158.01 Aligned_cols=157 Identities=23% Similarity=0.220 Sum_probs=109.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEeCCE-EEEEEecCCchh----hHHhHH---HHhcCCCE
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGNV-TIKLWDLGGQRR----FRTMWE---RYCRGVSA 83 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~-~~~~~D~~g~~~----~~~~~~---~~~~~~d~ 83 (177)
+|+++|.+|||||||++++.+...... ...|.......+..++. .+.+|||||... ...... ..+..+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 689999999999999999986543211 22343444444555555 899999999632 111222 23456999
Q ss_pred EEEEEeCCCC-CCHHHHHHHHHHHHcCCC-CCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCC
Q 030429 84 ILYVVDAADR-DSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSIN 161 (177)
Q Consensus 84 ~i~v~d~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 161 (177)
+++|+|++++ .+++....|...+..... ...+|+++|+||+|+.+.....+..+.+.... ...+++++||+++.|
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~g 158 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKEL---WGKPVFPISALTGEG 158 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhC---CCCCEEEEecCCCCC
Confidence 9999999998 788888877776654321 23689999999999976544433333221111 234789999999999
Q ss_pred hHHHHHHHHHHh
Q 030429 162 IDAVIDWLIKHS 173 (177)
Q Consensus 162 i~~l~~~l~~~~ 173 (177)
++++++++.+.+
T Consensus 159 i~~l~~~i~~~~ 170 (170)
T cd01898 159 LDELLRKLAELL 170 (170)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 126
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.95 E-value=6.4e-27 Score=161.22 Aligned_cols=117 Identities=28% Similarity=0.394 Sum_probs=99.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEe-------CCEEEEEEecCCchhhHHhHHHHhcCCCE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTK-------GNVTIKLWDLGGQRRFRTMWERYCRGVSA 83 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~-------~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (177)
+||+++|++|||||||+++++++.+...+.+|.+.... .+.. ..+.+++||++|++++......+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 58999999999999999999999988888888874432 2332 35789999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHcCC------------------CCCCCcEEEEeeCCCcccc
Q 030429 84 ILYVVDAADRDSVPIARSELHELLMKP------------------SLSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~iiv~nK~D~~~~ 129 (177)
+++|||++++.+++++..|+..+.... ...+.|+++|+||+|+.+.
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 999999999999999999998886531 2246899999999999654
No 127
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.95 E-value=1.6e-26 Score=154.94 Aligned_cols=153 Identities=18% Similarity=0.170 Sum_probs=103.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC---CCCC--CCCccceeEEEEEeC-CEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGG---YSED--MIPTVGFNMRKVTKG-NVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~---~~~~--~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
+.|+++|.+|||||||++++.+.. +... ...|.+.....+... +..+.+|||||++++......++.++|++++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 368999999999999999998532 2211 123444444445554 7799999999999998777778889999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH----HHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK----QALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
|+|+++... ......+..+ ... ...|+++|+||+|+.+.... +++.+.+... .....+++++||+++.|+
T Consensus 81 V~d~~~~~~-~~~~~~~~~~-~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v 154 (164)
T cd04171 81 VVAADEGIM-PQTREHLEIL-ELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGT--FLADAPIFPVSAVTGEGI 154 (164)
T ss_pred EEECCCCcc-HhHHHHHHHH-HHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhc--CcCCCcEEEEeCCCCcCH
Confidence 999976321 2222222211 111 12489999999999764321 2222332211 113458999999999999
Q ss_pred HHHHHHHHH
Q 030429 163 DAVIDWLIK 171 (177)
Q Consensus 163 ~~l~~~l~~ 171 (177)
+++++.+.+
T Consensus 155 ~~l~~~l~~ 163 (164)
T cd04171 155 EELKEYLDE 163 (164)
T ss_pred HHHHHHHhh
Confidence 999998864
No 128
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.95 E-value=2.4e-27 Score=162.30 Aligned_cols=160 Identities=25% Similarity=0.357 Sum_probs=132.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
..+||+++|.+|+|||+|+.++..+.|...+.+|++..+.. +....+.+.++||+|+..+..+...++...|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 46799999999999999999999999999999999843333 334557888999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
|+++++.||+....++..+.........|+++|+||+|+..... .++-. .+ ...-.++|+++||+.+.+++++
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~-~l----a~~~~~~f~E~Sak~~~~v~~~ 156 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGK-AL----ARSWGCAFIETSAKLNYNVDEV 156 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHH-HH----HHhcCCcEEEeeccCCcCHHHH
Confidence 99999999999999999996666656789999999999976322 22211 11 2223346999999999999999
Q ss_pred HHHHHHHhhh
Q 030429 166 IDWLIKHSKT 175 (177)
Q Consensus 166 ~~~l~~~~~~ 175 (177)
|..|.+.+..
T Consensus 157 F~~L~r~~~~ 166 (196)
T KOG0395|consen 157 FYELVREIRL 166 (196)
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 129
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.95 E-value=2.4e-26 Score=169.04 Aligned_cols=169 Identities=20% Similarity=0.216 Sum_probs=122.5
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEe-CCEEEEEEecCCchh-------hHHh
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATGGYS--EDMIPTVGFNMRKVTK-GNVTIKLWDLGGQRR-------FRTM 73 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~-------~~~~ 73 (177)
...++.+--..|+++|.|+||||||++++.+.... .....|.......+.. +...+.+||+||... ....
T Consensus 150 ~~~lelk~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~ 229 (335)
T PRK12299 150 WLRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHR 229 (335)
T ss_pred EEEEEEcccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHH
Confidence 45566777789999999999999999999865432 2233455666666666 557899999999632 1222
Q ss_pred HHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-CCCCcEEEEeeCCCcccccCHH-HHHHHhCcccccCCceeE
Q 030429 74 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSEALSKQ-ALVDQLGLESITDREVCC 151 (177)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~ 151 (177)
...+++.++++++|+|+++.++++....|..++..+.. ..++|+++|+||+|+.+..... +..+.. ......++
T Consensus 230 flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~----~~~~~~~i 305 (335)
T PRK12299 230 FLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALE----LAALGGPV 305 (335)
T ss_pred HHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHH----HHhcCCCE
Confidence 33456789999999999988889888888887765422 2468999999999997643322 111111 01123479
Q ss_pred EEeeecCCCChHHHHHHHHHHhhhc
Q 030429 152 YMISCKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 152 ~~~Sa~~~~~i~~l~~~l~~~~~~~ 176 (177)
+++||+++.|+++++++|.+.+.+.
T Consensus 306 ~~iSAktg~GI~eL~~~L~~~l~~~ 330 (335)
T PRK12299 306 FLISAVTGEGLDELLRALWELLEEA 330 (335)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999988654
No 130
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=1.4e-28 Score=152.90 Aligned_cols=151 Identities=28% Similarity=0.465 Sum_probs=125.8
Q ss_pred EEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEE----EEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCC
Q 030429 17 LIGLQNAGKTSLVNTIATGGYS-EDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAA 91 (177)
Q Consensus 17 i~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 91 (177)
++|++++|||+|+-++..+.|- ....+|.++++.. +....+.+++|||+||++|++....|++++|+++++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 6899999999999999877654 3455677777665 3345688999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc-----cCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 92 DRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA-----LSKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
+..||++++.|+.++-++.. ..+.+++++||+|+..+ ++-+.+.+.++. |++++||++|.|++..|
T Consensus 82 nkasfdn~~~wlsei~ey~k-~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~i--------pfmetsaktg~nvd~af 152 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYAK-EAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGI--------PFMETSAKTGFNVDLAF 152 (192)
T ss_pred cchhHHHHHHHHHHHHHHHH-hhHhHhhhccccccchhhccccchHHHHHHHHCC--------CceeccccccccHhHHH
Confidence 99999999999999977633 45788999999999552 233555555554 89999999999999999
Q ss_pred HHHHHHhhhc
Q 030429 167 DWLIKHSKTA 176 (177)
Q Consensus 167 ~~l~~~~~~~ 176 (177)
-.|.+.+++.
T Consensus 153 ~~ia~~l~k~ 162 (192)
T KOG0083|consen 153 LAIAEELKKL 162 (192)
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 131
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.95 E-value=4.9e-26 Score=158.03 Aligned_cols=154 Identities=22% Similarity=0.279 Sum_probs=108.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEEeCC-EEEEEEecCCchh---------hHHhHHHH
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSE--DMIPTVGFNMRKVTKGN-VTIKLWDLGGQRR---------FRTMWERY 77 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~---------~~~~~~~~ 77 (177)
+..++|+++|++|||||||++++++..+.. ...+|.......+..++ ..+.+|||||... +.... ..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HH
Confidence 445899999999999999999999775332 23344444444555444 4899999999622 22211 23
Q ss_pred hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeec
Q 030429 78 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCK 157 (177)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (177)
+..+|++++|+|++++.+......+...+ ......++|+++|+||+|+.+..... +. ......+++++||+
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l-~~~~~~~~~viiV~NK~Dl~~~~~~~---~~-----~~~~~~~~~~~Sa~ 188 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVEKVL-KELGAEDIPMILVLNKIDLLDDEELE---ER-----LEAGRPDAVFISAK 188 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHHHHH-HHcCcCCCCEEEEEEccccCChHHHH---HH-----hhcCCCceEEEEcC
Confidence 56799999999999988877665544443 32233468999999999997653322 11 11234479999999
Q ss_pred CCCChHHHHHHHHHHh
Q 030429 158 DSINIDAVIDWLIKHS 173 (177)
Q Consensus 158 ~~~~i~~l~~~l~~~~ 173 (177)
++.|+++++++|.+.+
T Consensus 189 ~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 189 TGEGLDELLEAIEELL 204 (204)
T ss_pred CCCCHHHHHHHHHhhC
Confidence 9999999999998754
No 132
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.95 E-value=5.6e-26 Score=154.60 Aligned_cols=151 Identities=19% Similarity=0.288 Sum_probs=106.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC-------CCCCCCCcc------cee----EEEE-----EeCCEEEEEEecCCchhhH
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGG-------YSEDMIPTV------GFN----MRKV-----TKGNVTIKLWDLGGQRRFR 71 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~-------~~~~~~~t~------~~~----~~~~-----~~~~~~~~~~D~~g~~~~~ 71 (177)
+|+++|+++||||||+++|++.. +...+.++. +.. .... ...++.+++|||||+.++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 78999999999999999998632 111111111 111 1112 3356889999999999999
Q ss_pred HhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH---HHHHHHhCcccccCCc
Q 030429 72 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK---QALVDQLGLESITDRE 148 (177)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~ 148 (177)
..+..++.++|++++|+|+++..+......+.. ... .++|+++|+||+|+.+.... +++.+.++. ..
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~-~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~-----~~ 151 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYL-ALE----NNLEIIPVINKIDLPSADPERVKQQIEDVLGL-----DP 151 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHH-HHH----cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCC-----Cc
Confidence 999999999999999999998766665544432 222 36899999999998653211 222222221 12
Q ss_pred eeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 149 VCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 149 ~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
..++++||++|.|+++++++|.+.+.
T Consensus 152 ~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 152 SEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred ccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 35899999999999999999988763
No 133
>PRK15494 era GTPase Era; Provisional
Probab=99.94 E-value=1.4e-25 Score=165.94 Aligned_cols=158 Identities=20% Similarity=0.243 Sum_probs=110.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEeCCEEEEEEecCCchhh-HHh-------HHHHh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF-RTM-------WERYC 78 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-~~~-------~~~~~ 78 (177)
++..+|+++|.+|||||||+|+|++..+. +....|.......+..++.++.+|||||.... ... ....+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 45679999999999999999999987654 33334545555556778889999999997432 111 11246
Q ss_pred cCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecC
Q 030429 79 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKD 158 (177)
Q Consensus 79 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (177)
.++|++++|+|.++ ++.....++...+.. .+.|.++|+||+|+.+. ...+..+.+... .....++++||++
T Consensus 130 ~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~~---~~~~~i~~iSAkt 200 (339)
T PRK15494 130 HSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTEN---HPDSLLFPISALS 200 (339)
T ss_pred hhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHhc---CCCcEEEEEeccC
Confidence 78999999999755 455554444443332 24677889999998653 333344433221 1234799999999
Q ss_pred CCChHHHHHHHHHHhhhc
Q 030429 159 SINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 159 ~~~i~~l~~~l~~~~~~~ 176 (177)
|.|+++++++|.+.+...
T Consensus 201 g~gv~eL~~~L~~~l~~~ 218 (339)
T PRK15494 201 GKNIDGLLEYITSKAKIS 218 (339)
T ss_pred ccCHHHHHHHHHHhCCCC
Confidence 999999999999887653
No 134
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.94 E-value=1.5e-25 Score=150.92 Aligned_cols=156 Identities=22% Similarity=0.246 Sum_probs=109.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEEe---CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTK---GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
.|+++|.+|+|||||+++|.++.+...... +.......+.. .+..+.+|||||+..+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 489999999999999999997776554322 22233333444 3688999999999999888888889999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHH---HhCccc--ccCCceeEEEeeecCCCChH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVD---QLGLES--ITDREVCCYMISCKDSINID 163 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~Sa~~~~~i~ 163 (177)
|+++...... ...+..+.. .++|+++|+||+|+.+.. .+...+ .+.... ......+++++|+++|.|++
T Consensus 82 d~~~~~~~~~-~~~~~~~~~----~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (168)
T cd01887 82 AADDGVMPQT-IEAIKLAKA----ANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGID 155 (168)
T ss_pred ECCCCccHHH-HHHHHHHHH----cCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeecccCCCHH
Confidence 9987543222 222222222 368999999999987532 222222 221111 12245689999999999999
Q ss_pred HHHHHHHHHhhh
Q 030429 164 AVIDWLIKHSKT 175 (177)
Q Consensus 164 ~l~~~l~~~~~~ 175 (177)
+++++|.+...+
T Consensus 156 ~l~~~l~~~~~~ 167 (168)
T cd01887 156 DLLEAILLLAEK 167 (168)
T ss_pred HHHHHHHHhhhc
Confidence 999999987654
No 135
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.94 E-value=3.1e-25 Score=170.84 Aligned_cols=161 Identities=21% Similarity=0.180 Sum_probs=113.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEeCCEEEEEEecCCch----------hhHHhH-H
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQR----------RFRTMW-E 75 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~-~ 75 (177)
...++|+++|.+|||||||+++|++..+. .....|.......+..++..+.+|||||.. .+.... .
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~ 288 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTH 288 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHH
Confidence 35689999999999999999999977542 222334334444566778889999999952 222221 2
Q ss_pred HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEee
Q 030429 76 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMIS 155 (177)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 155 (177)
.+++.+|++++|+|++++.+..... ++..+.. .++|+++|+||+|+.+........+............+++++|
T Consensus 289 ~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S 363 (472)
T PRK03003 289 AAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS 363 (472)
T ss_pred HHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 3578899999999999988777653 3343333 3689999999999976433222222222112222345789999
Q ss_pred ecCCCChHHHHHHHHHHhhh
Q 030429 156 CKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 156 a~~~~~i~~l~~~l~~~~~~ 175 (177)
|++|.|++++|+.+.+.+.+
T Consensus 364 Ak~g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 364 AKTGRAVDKLVPALETALES 383 (472)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999987753
No 136
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.94 E-value=2.8e-25 Score=160.09 Aligned_cols=154 Identities=20% Similarity=0.165 Sum_probs=103.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC--C-CCCccceeEEEEEeCCEEEEEEecCCchhhH--------HhHHHHhcCCC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSE--D-MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR--------TMWERYCRGVS 82 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~--~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~~~~d 82 (177)
+|+++|.||||||||+|+|++..+.. . ...|..........++.++.+|||||..... .....++.++|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 68999999999999999999876431 2 2223222222334566789999999964321 11234578999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 83 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 83 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
++++|+|+++..+.. . ++...+.. .+.|+++|+||+|+.+........+.+... ....+++++||++|.|+
T Consensus 82 vvl~VvD~~~~~~~~--~-~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~v~~iSA~~g~gi 152 (270)
T TIGR00436 82 LILFVVDSDQWNGDG--E-FVLTKLQN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAIL---EDFKDIVPISALTGDNT 152 (270)
T ss_pred EEEEEEECCCCCchH--H-HHHHHHHh---cCCCEEEEEECeeCCCHHHHHHHHHHHHhh---cCCCceEEEecCCCCCH
Confidence 999999998876654 2 22333222 368999999999997533222222222111 11226899999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030429 163 DAVIDWLIKHSKTA 176 (177)
Q Consensus 163 ~~l~~~l~~~~~~~ 176 (177)
++++++|.+.+...
T Consensus 153 ~~L~~~l~~~l~~~ 166 (270)
T TIGR00436 153 SFLAAFIEVHLPEG 166 (270)
T ss_pred HHHHHHHHHhCCCC
Confidence 99999999887643
No 137
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.94 E-value=2.5e-25 Score=147.87 Aligned_cols=154 Identities=23% Similarity=0.328 Sum_probs=115.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
.+||+++|.+|+|||||++++..+.+.....++.+..... +..++ +.+.+||+||+..+...+......++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 3699999999999999999999888666665655554444 55666 8899999999999988888888899999999
Q ss_pred EeCCCC-CCHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 88 VDAADR-DSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 88 ~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|.... .++.... .+...+..... .+.|+++++||+|+............+.. ....+++++||+++.|++++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~sa~~~~gv~~~ 155 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFAK----LNGEPIIPLSAETGKNIDSA 155 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHhh----ccCCceEEeecCCCCCHHHH
Confidence 999776 5555554 44444444332 27899999999999765422333333222 12236999999999999999
Q ss_pred HHHHH
Q 030429 166 IDWLI 170 (177)
Q Consensus 166 ~~~l~ 170 (177)
+++|.
T Consensus 156 ~~~l~ 160 (161)
T TIGR00231 156 FKIVE 160 (161)
T ss_pred HHHhh
Confidence 99874
No 138
>PRK04213 GTP-binding protein; Provisional
Probab=99.94 E-value=3.9e-26 Score=158.19 Aligned_cols=162 Identities=25% Similarity=0.286 Sum_probs=105.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCC-----------chhhHHhHHHH
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG-----------QRRFRTMWERY 77 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~~~ 77 (177)
....++|+++|.+|+|||||++++.+..+.....++.......+..+ .+.+||||| ++.++..+..+
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRY 83 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHH
Confidence 34568999999999999999999998776544444333333333333 689999999 56666655555
Q ss_pred hc----CCCEEEEEEeCCCCCCHHH---------HHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcc
Q 030429 78 CR----GVSAILYVVDAADRDSVPI---------ARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLE 142 (177)
Q Consensus 78 ~~----~~d~~i~v~d~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~ 142 (177)
+. .++++++|+|.++...... ....+...... .++|+++|+||+|+.+.. ..+++.+.++..
T Consensus 84 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~ 160 (201)
T PRK04213 84 IEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLY 160 (201)
T ss_pred HHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcHHHHHHHHHHHhcCC
Confidence 43 4678889999865322100 01111222222 368999999999986543 223444444421
Q ss_pred ccc-CCceeEEEeeecCCCChHHHHHHHHHHhhhc
Q 030429 143 SIT-DREVCCYMISCKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 143 ~~~-~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 176 (177)
... ....+++++||++| |+++++++|.+.+.+.
T Consensus 161 ~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 161 PPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred ccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 111 11136899999999 9999999999987653
No 139
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.4e-26 Score=149.90 Aligned_cols=171 Identities=31% Similarity=0.591 Sum_probs=147.4
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHhcC-------CCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHh
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATG-------GYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYC 78 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~-------~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~ 78 (177)
.++.+..+.|+|+|..++|||||+.+.... --.....+|.+.+...+..++..+.+||.+|++..+++|..|+
T Consensus 11 ~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY 90 (197)
T KOG0076|consen 11 YMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYY 90 (197)
T ss_pred HHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHHHHHHHHHHH
Confidence 356678899999999999999999998631 1234466788899999888899999999999999999999999
Q ss_pred cCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCc-ccccCCceeEEEeeec
Q 030429 79 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGL-ESITDREVCCYMISCK 157 (177)
Q Consensus 79 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Sa~ 157 (177)
..++++++++|+++++.++.....+..+.......+.|+++.+||.|+.+..+..++...++. .....+..++.++||.
T Consensus 91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal 170 (197)
T KOG0076|consen 91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSAL 170 (197)
T ss_pred HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhh
Confidence 999999999999999999999999999988877788999999999999988777777776663 2333456789999999
Q ss_pred CCCChHHHHHHHHHHhhhc
Q 030429 158 DSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 158 ~~~~i~~l~~~l~~~~~~~ 176 (177)
+|+||++-.+|++..+.+.
T Consensus 171 ~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 171 TGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hcccHHHHHHHHHHHHhhc
Confidence 9999999999999987764
No 140
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.94 E-value=4.5e-25 Score=162.18 Aligned_cols=166 Identities=20% Similarity=0.200 Sum_probs=119.7
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEeCC-EEEEEEecCCchhh-------HHh
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATGGYS--EDMIPTVGFNMRKVTKGN-VTIKLWDLGGQRRF-------RTM 73 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~-------~~~ 73 (177)
...++.+.-..|+++|.|++|||||++++.+.... ....+|.......+..++ ..+.+||+||.... ...
T Consensus 149 ~~~lelk~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~ 228 (329)
T TIGR02729 149 WLRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHR 228 (329)
T ss_pred EEEEEeeccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHH
Confidence 45667777889999999999999999999976432 122345555666666666 89999999996421 122
Q ss_pred HHHHhcCCCEEEEEEeCCCC---CCHHHHHHHHHHHHcCC-CCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCce
Q 030429 74 WERYCRGVSAILYVVDAADR---DSVPIARSELHELLMKP-SLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREV 149 (177)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 149 (177)
...++..++++++|+|+++. ++++....|..++.... ....+|+++|+||+|+.+....++..+.+... ...
T Consensus 229 flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~----~~~ 304 (329)
T TIGR02729 229 FLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKA----LGK 304 (329)
T ss_pred HHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHH----cCC
Confidence 23345679999999999976 67777777766664432 12468999999999997654444444333211 124
Q ss_pred eEEEeeecCCCChHHHHHHHHHHh
Q 030429 150 CCYMISCKDSINIDAVIDWLIKHS 173 (177)
Q Consensus 150 ~~~~~Sa~~~~~i~~l~~~l~~~~ 173 (177)
+++++||+++.|+++++++|.+.+
T Consensus 305 ~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 305 PVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred cEEEEEccCCcCHHHHHHHHHHHh
Confidence 699999999999999999998865
No 141
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.2e-25 Score=141.29 Aligned_cols=160 Identities=21% Similarity=0.309 Sum_probs=129.4
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcccee----EEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN----MRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSA 83 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (177)
....-+|-+++|+-|+|||+|+.++....|..+...|++.. ..++....+.+++|||+|+++|+...+.+++++..
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag 86 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 86 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 34567899999999999999999999999888877777643 34456677999999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCC
Q 030429 84 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSIN 161 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 161 (177)
+++|+|++.+..+..+..|+.+..... .++.-+++++||.|+....+ .++..+... ..+..++++||++|.|
T Consensus 87 almvyditrrstynhlsswl~dar~lt-npnt~i~lignkadle~qrdv~yeeak~fae-----engl~fle~saktg~n 160 (215)
T KOG0097|consen 87 ALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLESQRDVTYEEAKEFAE-----ENGLMFLEASAKTGQN 160 (215)
T ss_pred eeEEEEehhhhhhhhHHHHHhhhhccC-CCceEEEEecchhhhhhcccCcHHHHHHHHh-----hcCeEEEEecccccCc
Confidence 999999999999999999999885543 36677889999999975432 333333322 2334789999999999
Q ss_pred hHHHHHHHHHHh
Q 030429 162 IDAVIDWLIKHS 173 (177)
Q Consensus 162 i~~l~~~l~~~~ 173 (177)
+++.|-...+.+
T Consensus 161 vedafle~akki 172 (215)
T KOG0097|consen 161 VEDAFLETAKKI 172 (215)
T ss_pred HHHHHHHHHHHH
Confidence 999887666554
No 142
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.5e-26 Score=145.40 Aligned_cols=171 Identities=35% Similarity=0.598 Sum_probs=151.6
Q ss_pred ccccc-ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 6 SLFFK-QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 6 ~~~~~-~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
.++++ +..+|+++|--|+||+|++.++.-+ .....-|++++....+..++..+++||.+|+...+..|+.|+.+.|++
T Consensus 11 ~L~g~e~e~rililgldGaGkttIlyrlqvg-evvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~av 89 (182)
T KOG0072|consen 11 ALQGPEREMRILILGLDGAGKTTILYRLQVG-EVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAV 89 (182)
T ss_pred HhcCCccceEEEEeeccCCCeeEEEEEcccC-cccccCCCCCcCccccccccccceeeEccCcccccHHHHHHhcccceE
Confidence 44555 8899999999999999999998533 333455888999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
|+|+|.+|.+........+..++......+-.++++.||.|........+....++......+.+.+|.+||..|+|+++
T Consensus 90 IyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~ 169 (182)
T KOG0072|consen 90 IYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDP 169 (182)
T ss_pred EEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcH
Confidence 99999999999998888888888887767777888899999988888888888898888888889999999999999999
Q ss_pred HHHHHHHHhhhcC
Q 030429 165 VIDWLIKHSKTAK 177 (177)
Q Consensus 165 l~~~l~~~~~~~~ 177 (177)
..+||.+.++.++
T Consensus 170 ~~DWL~~~l~~~~ 182 (182)
T KOG0072|consen 170 AMDWLQRPLKSRQ 182 (182)
T ss_pred HHHHHHHHHhccC
Confidence 9999999987653
No 143
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.94 E-value=1.1e-24 Score=149.14 Aligned_cols=156 Identities=19% Similarity=0.207 Sum_probs=113.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCC------------------CCccceeEEEEEeCCEEEEEEecCCchhhHHhHH
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDM------------------IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWE 75 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~------------------~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 75 (177)
+|+++|.+|+|||||++++.+....... ..+...........+..+.+||+||+..+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 5899999999999999999876554332 1222333344556678999999999998888888
Q ss_pred HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHH----HHHHHhCcccc-------
Q 030429 76 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ----ALVDQLGLESI------- 144 (177)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~----~~~~~~~~~~~------- 144 (177)
.++..+|++++|+|++++..... ..++..... .+.|+++|+||+|+....... ...+.++....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG 155 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence 88999999999999987654332 233333322 478999999999998643332 23333332221
Q ss_pred --cCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 145 --TDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 145 --~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
.....+++++||++|.|++++++++.+.+.
T Consensus 156 ~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 224578999999999999999999998875
No 144
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.93 E-value=9.4e-25 Score=161.82 Aligned_cols=151 Identities=23% Similarity=0.268 Sum_probs=109.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEe-CCEEEEEEecCCc---------hhhHHhHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYS--EDMIPTVGFNMRKVTK-GNVTIKLWDLGGQ---------RRFRTMWERYC 78 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~---------~~~~~~~~~~~ 78 (177)
..++|+++|.+|+|||||+|+|++.... ....+|.......+.. ++..+.+|||||. +.|...+ ..+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EEV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence 4489999999999999999999987643 2334566666677766 5689999999996 2233322 347
Q ss_pred cCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecC
Q 030429 79 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKD 158 (177)
Q Consensus 79 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (177)
.++|++++|+|++++.+.+....+...+ ......++|+++|+||+|+.+..... .... ...+++++||++
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~~~~L-~~l~~~~~piIlV~NK~Dl~~~~~v~---~~~~------~~~~~i~iSAkt 336 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAVEKVL-EELGAEDIPQLLVYNKIDLLDEPRIE---RLEE------GYPEAVFVSAKT 336 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHHHHHH-HHhccCCCCEEEEEEeecCCChHhHH---HHHh------CCCCEEEEEccC
Confidence 7899999999999988777665443332 33233468999999999997542221 1111 112589999999
Q ss_pred CCChHHHHHHHHHH
Q 030429 159 SINIDAVIDWLIKH 172 (177)
Q Consensus 159 ~~~i~~l~~~l~~~ 172 (177)
|.|+++++++|.+.
T Consensus 337 g~GI~eL~~~I~~~ 350 (351)
T TIGR03156 337 GEGLDLLLEAIAER 350 (351)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999999765
No 145
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.93 E-value=1.5e-24 Score=149.51 Aligned_cols=148 Identities=24% Similarity=0.278 Sum_probs=101.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc--CCCCCCC----------------CCccceeEEEEEeCCEEEEEEecCCchhhHHhH
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT--GGYSEDM----------------IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMW 74 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~--~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 74 (177)
-+|+++|.+++|||||+++|++ +.+.... ..+.......+..++..+++|||||+.+|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999996 4443321 112223334466778999999999999999999
Q ss_pred HHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC---HHHHHHHhCccc--ccCCce
Q 030429 75 ERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS---KQALVDQLGLES--ITDREV 149 (177)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~---~~~~~~~~~~~~--~~~~~~ 149 (177)
..+++.+|++++|+|+++.. ......++..... .++|+++|+||+|+.+... .++..+.+.... ......
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDF 157 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCcc
Confidence 99999999999999998742 3333334443322 3689999999999965322 122222221111 112256
Q ss_pred eEEEeeecCCCChHHH
Q 030429 150 CCYMISCKDSINIDAV 165 (177)
Q Consensus 150 ~~~~~Sa~~~~~i~~l 165 (177)
+++++||++|.|+.++
T Consensus 158 ~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 158 PVLYASAKNGWASLNL 173 (194)
T ss_pred CEEEeehhcccccccc
Confidence 8999999999776433
No 146
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.93 E-value=1.5e-25 Score=140.54 Aligned_cols=165 Identities=30% Similarity=0.538 Sum_probs=149.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCC-EEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGN-VTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
.++.+||+++|-.++|||||+..|. +.-.+...+|.++.+..++..+ ..+++||++|+...+..|..|+...|.+|+|
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~-sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyV 92 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLK-SEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYV 92 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHc-cCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEE
Confidence 4788999999999999999999997 4445567789999999998766 9999999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
+|.+|...|+++...+.++++.......|+++..||.|+.-....++....+.......+.+.+.+|||..++|+.+-.+
T Consensus 93 IDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~ 172 (185)
T KOG0074|consen 93 IDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSD 172 (185)
T ss_pred EeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcch
Confidence 99999999999999999999988888899999999999988878888888888888888899999999999999999999
Q ss_pred HHHHHhh
Q 030429 168 WLIKHSK 174 (177)
Q Consensus 168 ~l~~~~~ 174 (177)
|+.....
T Consensus 173 wv~sn~~ 179 (185)
T KOG0074|consen 173 WVQSNPE 179 (185)
T ss_pred hhhcCCC
Confidence 8887654
No 147
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.93 E-value=2.6e-25 Score=145.96 Aligned_cols=134 Identities=22% Similarity=0.223 Sum_probs=91.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCch-----hhHHhHHHHhcCCCEEEEEE
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQR-----RFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~-----~~~~~~~~~~~~~d~~i~v~ 88 (177)
||+++|++|||||||++++.+..+. +.+|.+ .+... .+|||||+. .+.... ..++++|++++|+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~-----~~~~~---~~iDt~G~~~~~~~~~~~~~-~~~~~ad~vilv~ 70 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQA-----VEYND---GAIDTPGEYVENRRLYSALI-VTAADADVIALVQ 70 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--ccccee-----EEEcC---eeecCchhhhhhHHHHHHHH-HHhhcCCEEEEEe
Confidence 8999999999999999999876542 222322 22222 689999972 333333 3478999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc-CHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL-SKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
|++++.++... .| .... ..|+++|+||+|+.+.. ..++..+..... ...+++++||++|.|++++|+
T Consensus 71 d~~~~~s~~~~-~~-~~~~------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 71 SATDPESRFPP-GF-ASIF------VKPVIGLVTKIDLAEADVDIERAKELLETA----GAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred cCCCCCcCCCh-hH-HHhc------cCCeEEEEEeeccCCcccCHHHHHHHHHHc----CCCcEEEEecCCCCCHHHHHH
Confidence 99999887552 22 2221 24999999999986532 222222222111 112689999999999999999
Q ss_pred HHH
Q 030429 168 WLI 170 (177)
Q Consensus 168 ~l~ 170 (177)
++.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
No 148
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.93 E-value=2.4e-24 Score=143.29 Aligned_cols=144 Identities=19% Similarity=0.183 Sum_probs=106.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEeCCEEEEEEecCCchhhHH--------hHHHHhcCC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT--------MWERYCRGV 81 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~ 81 (177)
++|+++|++|+|||||++++.+.... .....+.......+...+..+.+|||||...+.. .....+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 68999999999999999999976532 1222233344445666788999999999654432 122456789
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCC
Q 030429 82 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSIN 161 (177)
Q Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 161 (177)
|++++|+|++++.+......+.. ..+.|+++|+||+|+.+.... .......+++++||+++.|
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~----------~~~~~~~~~~~~Sa~~~~~ 144 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL----------LSLLAGKPIIAISAKTGEG 144 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc----------ccccCCCceEEEECCCCCC
Confidence 99999999998877766544332 247899999999999765432 1122244799999999999
Q ss_pred hHHHHHHHHHHh
Q 030429 162 IDAVIDWLIKHS 173 (177)
Q Consensus 162 i~~l~~~l~~~~ 173 (177)
+++++++|.+.+
T Consensus 145 v~~l~~~l~~~~ 156 (157)
T cd04164 145 LDELKEALLELA 156 (157)
T ss_pred HHHHHHHHHHhh
Confidence 999999998765
No 149
>PLN00023 GTP-binding protein; Provisional
Probab=99.93 E-value=8.9e-25 Score=157.77 Aligned_cols=123 Identities=21% Similarity=0.363 Sum_probs=104.0
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEe---------------CCEEEEEEecCCchh
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTK---------------GNVTIKLWDLGGQRR 69 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~---------------~~~~~~~~D~~g~~~ 69 (177)
......+||+++|..|||||||++++.++.+...+.+|++.... .+.. ..+.+++|||+|+++
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr 95 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER 95 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence 44567799999999999999999999999888888888876543 2332 247799999999999
Q ss_pred hHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-----------CCCCcEEEEeeCCCcccc
Q 030429 70 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPS-----------LSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~iiv~nK~D~~~~ 129 (177)
|..++..++++++++|+|||++++.+++++..|+..+..... ...+|+++|+||+|+.+.
T Consensus 96 frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 96 YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 999999999999999999999999999999999998876421 135899999999998653
No 150
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.93 E-value=8.3e-25 Score=150.49 Aligned_cols=157 Identities=18% Similarity=0.125 Sum_probs=104.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC----CCCCC-----CCCccceeEEEEEeC--------------CEEEEEEecCCchh
Q 030429 13 MELSLIGLQNAGKTSLVNTIATG----GYSED-----MIPTVGFNMRKVTKG--------------NVTIKLWDLGGQRR 69 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~----~~~~~-----~~~t~~~~~~~~~~~--------------~~~~~~~D~~g~~~ 69 (177)
+||+++|++++|||||+++|++. .+... ...|.+.....+... +..+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999862 11111 123444443333322 68999999999977
Q ss_pred hHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHH----HHHHHhCccc--
Q 030429 70 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ----ALVDQLGLES-- 143 (177)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~----~~~~~~~~~~-- 143 (177)
+..........+|++++|+|+++.........+. +... .+.|+++|+||+|+......+ +..+.+....
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 155 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK 155 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 6555545567789999999998754433322221 1121 256999999999987543322 2222221111
Q ss_pred ccCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 144 ITDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 144 ~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
....+.+++++||++|.|+++|++.|.+.+.
T Consensus 156 ~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 156 TRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred cCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 1124568999999999999999999988764
No 151
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.93 E-value=3.6e-25 Score=150.09 Aligned_cols=153 Identities=25% Similarity=0.261 Sum_probs=107.0
Q ss_pred EEcCCCCCHHHHHHHHhcCCC--CCCCCCccceeEEEEEeC-CEEEEEEecCCchhh----HH---hHHHHhcCCCEEEE
Q 030429 17 LIGLQNAGKTSLVNTIATGGY--SEDMIPTVGFNMRKVTKG-NVTIKLWDLGGQRRF----RT---MWERYCRGVSAILY 86 (177)
Q Consensus 17 i~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~----~~---~~~~~~~~~d~~i~ 86 (177)
++|++|||||||++++.+... ......|.......+..+ +..+.+|||||.... .. .....+..+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 589999999999999997754 222233444444555566 889999999996321 11 22345778999999
Q ss_pred EEeCCCC------CCHHHHHHHHHHHHcCCC------CCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEe
Q 030429 87 VVDAADR------DSVPIARSELHELLMKPS------LSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMI 154 (177)
Q Consensus 87 v~d~~~~------~~~~~~~~~~~~~~~~~~------~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (177)
|+|++++ .++.....+...+..... ..++|+++|+||+|+.......+.... ........+++++
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~---~~~~~~~~~~~~~ 157 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVR---ELALEEGAEVVPI 157 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHH---HHhcCCCCCEEEE
Confidence 9999988 467777667666654432 146899999999999765443332111 1112234469999
Q ss_pred eecCCCChHHHHHHHHHH
Q 030429 155 SCKDSINIDAVIDWLIKH 172 (177)
Q Consensus 155 Sa~~~~~i~~l~~~l~~~ 172 (177)
||+++.|++++++++...
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999998764
No 152
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.93 E-value=1.3e-24 Score=165.95 Aligned_cols=147 Identities=19% Similarity=0.218 Sum_probs=110.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHh--------HHHHh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM--------WERYC 78 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~ 78 (177)
+..++|+++|.+|+|||||+|++++... ......|.......+..++..+.+|||||...+... ...++
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 4568999999999999999999997653 222333444555667778899999999997654332 22357
Q ss_pred cCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecC
Q 030429 79 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKD 158 (177)
Q Consensus 79 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (177)
..+|++++|+|++++.+.+....| .. ..+.|+++|+||+|+.+..... .....+++++||++
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l-~~------~~~~piiiV~NK~DL~~~~~~~-----------~~~~~~~i~iSAkt 354 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEIL-EE------LKDKPVIVVLNKADLTGEIDLE-----------EENGKPVIRISAKT 354 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHH-Hh------cCCCCcEEEEEhhhccccchhh-----------hccCCceEEEEeeC
Confidence 889999999999998877654332 22 2468999999999997643221 11233689999999
Q ss_pred CCChHHHHHHHHHHhh
Q 030429 159 SINIDAVIDWLIKHSK 174 (177)
Q Consensus 159 ~~~i~~l~~~l~~~~~ 174 (177)
|.|+++++++|.+.+.
T Consensus 355 g~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 355 GEGIDELREAIKELAF 370 (449)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998765
No 153
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.93 E-value=1.7e-24 Score=165.60 Aligned_cols=160 Identities=19% Similarity=0.155 Sum_probs=111.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHh-----------HH
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM-----------WE 75 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-----------~~ 75 (177)
...++|+++|.+|+|||||++++++... ......|.......+..++..+.+|||||..++... ..
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~ 249 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTL 249 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHH
Confidence 3458999999999999999999997652 222223333344455667779999999996543211 12
Q ss_pred HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc-cccCHHHHHHHhCcccccCCceeEEEe
Q 030429 76 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS-EALSKQALVDQLGLESITDREVCCYMI 154 (177)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (177)
.+++.+|++++|+|++++.+.... ..+..... .+.|+++|+||+|+. +....++..+.+..........+++++
T Consensus 250 ~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~ 324 (429)
T TIGR03594 250 KAIERADVVLLVLDATEGITEQDL-RIAGLILE----AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFI 324 (429)
T ss_pred HHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEE
Confidence 357889999999999987665543 23333322 368999999999997 333334444444333333345789999
Q ss_pred eecCCCChHHHHHHHHHHhh
Q 030429 155 SCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 155 Sa~~~~~i~~l~~~l~~~~~ 174 (177)
||++|.|++++|+++.+...
T Consensus 325 SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 325 SALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999988654
No 154
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.93 E-value=8.5e-25 Score=144.10 Aligned_cols=151 Identities=28% Similarity=0.458 Sum_probs=112.9
Q ss_pred EEcCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEeC----CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCC
Q 030429 17 LIGLQNAGKTSLVNTIATGGY-SEDMIPTVGFNMRKVTKG----NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAA 91 (177)
Q Consensus 17 i~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 91 (177)
++|++|+|||||++++.+... .....++. ......... +..+.+||+||+..+.......++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999997766 34444444 444443333 688999999999988887788899999999999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHH
Q 030429 92 DRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLI 170 (177)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 170 (177)
++.+......++..........+.|+++++||+|.......+..... .........+++++|+.++.|+++++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELA--EQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHH--HHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 98888888777444444444567999999999999765443332100 011122345799999999999999999986
No 155
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.93 E-value=4.3e-24 Score=162.42 Aligned_cols=151 Identities=23% Similarity=0.296 Sum_probs=109.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCC--CCCC-CCccceeEEEEEeCCEEEEEEecCCchhhHHh--------HHHH
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGY--SEDM-IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM--------WERY 77 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~~~-~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~ 77 (177)
.+..++|+++|++|+|||||+|+|++... .... ..|.......+..++..+.+|||||...+... ...+
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 35678999999999999999999997642 2222 22334444556778899999999998654432 2346
Q ss_pred hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeec
Q 030429 78 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCK 157 (177)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (177)
++.+|++++|+|++++.+.+.. |+..+.. .+.|+++|+||+|+.+. +.+.+.+.+ +.+++++||+
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-~~~~~~~~~--------~~~~~~vSak 344 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-SLEFFVSSK--------VLNSSNLSAK 344 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-chhhhhhhc--------CCceEEEEEe
Confidence 7889999999999998877664 5554422 36899999999999654 222222111 2368899999
Q ss_pred CCCChHHHHHHHHHHhhh
Q 030429 158 DSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 158 ~~~~i~~l~~~l~~~~~~ 175 (177)
+ .|++++++.|.+.+.+
T Consensus 345 ~-~gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 345 Q-LKIKALVDLLTQKINA 361 (442)
T ss_pred c-CCHHHHHHHHHHHHHH
Confidence 8 6899999998887653
No 156
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.93 E-value=2.8e-24 Score=141.07 Aligned_cols=142 Identities=26% Similarity=0.318 Sum_probs=103.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEEeCCEEEEEEecCCchh------hHHhHHHHh--cCCC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSE--DMIPTVGFNMRKVTKGNVTIKLWDLGGQRR------FRTMWERYC--RGVS 82 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~------~~~~~~~~~--~~~d 82 (177)
++|+++|.|+||||||+|+|++..... ..+.|.+.....+..++..+.++|+||.-. .......++ .+.|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 589999999999999999999776432 244566677777888899999999999321 122333343 6899
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC----HHHHHHHhCcccccCCceeEEEeeecC
Q 030429 83 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS----KQALVDQLGLESITDREVCCYMISCKD 158 (177)
Q Consensus 83 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (177)
+++.|+|+++ ++........+.+. ++|+++|+||+|...... .+.+.+.++. +++++||++
T Consensus 81 ~ii~VvDa~~---l~r~l~l~~ql~e~----g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~--------pvi~~sa~~ 145 (156)
T PF02421_consen 81 LIIVVVDATN---LERNLYLTLQLLEL----GIPVVVVLNKMDEAERKGIEIDAEKLSERLGV--------PVIPVSART 145 (156)
T ss_dssp EEEEEEEGGG---HHHHHHHHHHHHHT----TSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS---------EEEEBTTT
T ss_pred EEEEECCCCC---HHHHHHHHHHHHHc----CCCEEEEEeCHHHHHHcCCEECHHHHHHHhCC--------CEEEEEeCC
Confidence 9999999976 44444455555544 799999999999876433 4566666653 799999999
Q ss_pred CCChHHHHHHH
Q 030429 159 SINIDAVIDWL 169 (177)
Q Consensus 159 ~~~i~~l~~~l 169 (177)
+.|++++++.|
T Consensus 146 ~~g~~~L~~~I 156 (156)
T PF02421_consen 146 GEGIDELKDAI 156 (156)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHhhC
Confidence 99999999875
No 157
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.93 E-value=9e-24 Score=142.65 Aligned_cols=156 Identities=19% Similarity=0.130 Sum_probs=105.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEeCCEEEEEEecCCchhh----------H-HhHHHH
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF----------R-TMWERY 77 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~----------~-~~~~~~ 77 (177)
.++|+++|.+|+|||||++++++.... .....+.......+..++..+.+||+||..+. . ......
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 578999999999999999999876432 11122223333445567778999999995432 1 111234
Q ss_pred hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--cCHHHHHHHhCcccccCCceeEEEee
Q 030429 78 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA--LSKQALVDQLGLESITDREVCCYMIS 155 (177)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S 155 (177)
+..+|++++|+|++++.+.... ..+..... .+.|+++++||+|+.+. ...+...+.+..........+++++|
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDL-RIAGLILE----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFIS 156 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHH-HHHHHHHh----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEe
Confidence 6789999999999988765443 22222222 36899999999999765 33333334433222222345799999
Q ss_pred ecCCCChHHHHHHHHHH
Q 030429 156 CKDSINIDAVIDWLIKH 172 (177)
Q Consensus 156 a~~~~~i~~l~~~l~~~ 172 (177)
|+++.|++++++++.+.
T Consensus 157 a~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 157 ALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccCCCCHHHHHHHHHHh
Confidence 99999999999998764
No 158
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.93 E-value=1.7e-24 Score=144.34 Aligned_cols=147 Identities=24% Similarity=0.255 Sum_probs=102.6
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEEeCCEEEEEEecCCchhhHH------hHHHHh--cCCCEEEE
Q 030429 17 LIGLQNAGKTSLVNTIATGGYSEDMI--PTVGFNMRKVTKGNVTIKLWDLGGQRRFRT------MWERYC--RGVSAILY 86 (177)
Q Consensus 17 i~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~~~d~~i~ 86 (177)
++|.+|+|||||++++.+........ .|.......+..++..+.+|||||+..+.. ....++ +.+|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 58999999999999999775433322 244455555667778999999999876543 234445 48999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
|+|+++++... .++..+.. .++|+++|+||+|+.+........+.+... .+.+++++||+++.|+++++
T Consensus 81 v~d~~~~~~~~---~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~----~~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 81 VVDATNLERNL---YLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKLSEL----LGVPVVPTSARKGEGIDELK 149 (158)
T ss_pred EeeCCcchhHH---HHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHHHHh----hCCCeEEEEccCCCCHHHHH
Confidence 99998754432 33333332 268999999999997653322212222111 12479999999999999999
Q ss_pred HHHHHHhh
Q 030429 167 DWLIKHSK 174 (177)
Q Consensus 167 ~~l~~~~~ 174 (177)
+++.+.+.
T Consensus 150 ~~l~~~~~ 157 (158)
T cd01879 150 DAIAELAE 157 (158)
T ss_pred HHHHHHhc
Confidence 99988764
No 159
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.93 E-value=5.2e-24 Score=164.13 Aligned_cols=154 Identities=19% Similarity=0.189 Sum_probs=106.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEeCCEEEEEEecCCchh--------hHHhHHHHh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR--------FRTMWERYC 78 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~ 78 (177)
....+|+++|.+|||||||+|++++.... .....|..........++..+.+|||||... +......++
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 34578999999999999999999976532 1222233344444566788899999999652 334455678
Q ss_pred cCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecC
Q 030429 79 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKD 158 (177)
Q Consensus 79 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (177)
+.+|++++|+|+++..+... ..+...+.. .++|+++|+||+|+..... +..+.+.. .. -..+++||++
T Consensus 116 ~~aD~il~VvD~~~~~s~~~--~~i~~~l~~---~~~piilV~NK~Dl~~~~~--~~~~~~~~-g~----~~~~~iSA~~ 183 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD--EAVARVLRR---SGKPVILAANKVDDERGEA--DAAALWSL-GL----GEPHPVSALH 183 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCccch--hhHHHHhc-CC----CCeEEEEcCC
Confidence 89999999999998766543 222333332 4789999999999864321 11111111 11 1247999999
Q ss_pred CCChHHHHHHHHHHhhh
Q 030429 159 SINIDAVIDWLIKHSKT 175 (177)
Q Consensus 159 ~~~i~~l~~~l~~~~~~ 175 (177)
|.|+++++++|.+.+.+
T Consensus 184 g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 184 GRGVGDLLDAVLAALPE 200 (472)
T ss_pred CCCcHHHHHHHHhhccc
Confidence 99999999999987754
No 160
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.93 E-value=3.4e-24 Score=146.97 Aligned_cols=159 Identities=24% Similarity=0.288 Sum_probs=115.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC--------------------CCCCCccceeEEEEE--eCCEEEEEEecCCc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYS--------------------EDMIPTVGFNMRKVT--KGNVTIKLWDLGGQ 67 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~--------------------~~~~~t~~~~~~~~~--~~~~~~~~~D~~g~ 67 (177)
++..+|+++|+.++|||||+++|+..... ....-|.......+. ..+..++++|+||+
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH 80 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc
Confidence 35689999999999999999999843211 112345666667777 88999999999999
Q ss_pred hhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhC-----cc
Q 030429 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLG-----LE 142 (177)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~-----~~ 142 (177)
..|.......+..+|++++|+|+.+.-. ......+..... .++|+++|+||+|+... ..++..+++. ..
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~-~~~~~~l~~~~~----~~~p~ivvlNK~D~~~~-~~~~~~~~~~~~l~~~~ 154 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQ-PQTEEHLKILRE----LGIPIIVVLNKMDLIEK-ELEEIIEEIKEKLLKEY 154 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBST-HHHHHHHHHHHH----TT-SEEEEEETCTSSHH-HHHHHHHHHHHHHHHHT
T ss_pred cceeecccceecccccceeeeecccccc-cccccccccccc----cccceEEeeeeccchhh-hHHHHHHHHHHHhcccc
Confidence 9999888888999999999999976532 223333333333 37889999999999832 2222222222 11
Q ss_pred cccC-CceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 143 SITD-REVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 143 ~~~~-~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
.... ...+++++||.+|.|+++|++.|.+.+.
T Consensus 155 ~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 155 GENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred ccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 1111 3579999999999999999999998764
No 161
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.93 E-value=3.9e-24 Score=163.07 Aligned_cols=168 Identities=22% Similarity=0.233 Sum_probs=117.5
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEeCCEEEEEEecCCchh----hHH---hH
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATGGYS--EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR----FRT---MW 74 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~----~~~---~~ 74 (177)
...++.+.-..|+|+|.|+||||||+++|.+.... .....|.......+..++..+.+||+||... ... ..
T Consensus 151 ~~~leLk~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~f 230 (500)
T PRK12296 151 DLVLELKSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDF 230 (500)
T ss_pred EEEEEecccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHH
Confidence 45567777889999999999999999999865432 2234566667777888889999999999532 111 12
Q ss_pred HHHhcCCCEEEEEEeCCCC----CCHHHHHHHHHHHHcCC----------CCCCCcEEEEeeCCCcccccCHHH-HHHHh
Q 030429 75 ERYCRGVSAILYVVDAADR----DSVPIARSELHELLMKP----------SLSGIPLLVLGNKIDKSEALSKQA-LVDQL 139 (177)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~----~~~~~~~~~~~~~~~~~----------~~~~~~~iiv~nK~D~~~~~~~~~-~~~~~ 139 (177)
..++..+|++++|+|+++. +.+.....+..++..+. ....+|+++|+||+|+.+.....+ +.+.+
T Consensus 231 LrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l 310 (500)
T PRK12296 231 LRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPEL 310 (500)
T ss_pred HHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHH
Confidence 2346779999999999863 34444444433333222 224689999999999975433222 22222
Q ss_pred CcccccCCceeEEEeeecCCCChHHHHHHHHHHhhhc
Q 030429 140 GLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 140 ~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 176 (177)
. ...++++++||+++.|+++++++|.+.+.+.
T Consensus 311 ~-----~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 311 E-----ARGWPVFEVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred H-----HcCCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 1 1245799999999999999999999987653
No 162
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.93 E-value=4.6e-24 Score=141.99 Aligned_cols=146 Identities=23% Similarity=0.216 Sum_probs=101.0
Q ss_pred EEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEEeCCEEEEEEecCCchhhHH--------hHHHHhcCCCEE
Q 030429 16 SLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT--------MWERYCRGVSAI 84 (177)
Q Consensus 16 ~i~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~d~~ 84 (177)
+++|.+|+|||||++++++... ......|...........+..+.+|||||...+.. .....+..+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 4789999999999999997642 12222233444555667788999999999876543 334567889999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
++|+|++++.+.... ++...... .+.|+++|+||+|+.+..........++ ..+++++|++++.|+++
T Consensus 81 i~v~d~~~~~~~~~~--~~~~~~~~---~~~piiiv~nK~D~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gv~~ 148 (157)
T cd01894 81 LFVVDGREGLTPADE--EIAKYLRK---SKKPVILVVNKVDNIKEEDEAAEFYSLG-------FGEPIPISAEHGRGIGD 148 (157)
T ss_pred EEEEeccccCCccHH--HHHHHHHh---cCCCEEEEEECcccCChHHHHHHHHhcC-------CCCeEEEecccCCCHHH
Confidence 999999775444332 22233222 3589999999999977533211111111 11578999999999999
Q ss_pred HHHHHHHHh
Q 030429 165 VIDWLIKHS 173 (177)
Q Consensus 165 l~~~l~~~~ 173 (177)
++++|.+.+
T Consensus 149 l~~~l~~~~ 157 (157)
T cd01894 149 LLDAILELL 157 (157)
T ss_pred HHHHHHhhC
Confidence 999998753
No 163
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.92 E-value=1.2e-23 Score=158.42 Aligned_cols=165 Identities=20% Similarity=0.241 Sum_probs=116.1
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEeC-CEEEEEEecCCchh----hHHhHH-
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATGGYS--EDMIPTVGFNMRKVTKG-NVTIKLWDLGGQRR----FRTMWE- 75 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~----~~~~~~- 75 (177)
...++.+--..|+++|.|+||||||++++++.... .....|.......+..+ +..+.+||+||... ...+..
T Consensus 150 ~~~lelk~~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~ 229 (424)
T PRK12297 150 ELRLELKLLADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQ 229 (424)
T ss_pred EEEEeecccCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHH
Confidence 34566666779999999999999999999976532 22334555555556655 78899999999532 112222
Q ss_pred --HHhcCCCEEEEEEeCCCC---CCHHHHHHHHHHHHcCCC-CCCCcEEEEeeCCCcccccC-HHHHHHHhCcccccCCc
Q 030429 76 --RYCRGVSAILYVVDAADR---DSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDRE 148 (177)
Q Consensus 76 --~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~ 148 (177)
.++..++++++|+|+++. ++++....|...+..+.. ...+|+++|+||+|+.+... .+++.+.+.
T Consensus 230 fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~-------- 301 (424)
T PRK12297 230 FLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLG-------- 301 (424)
T ss_pred HHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhC--------
Confidence 345669999999999865 567777666666654322 24689999999999844311 122222222
Q ss_pred eeEEEeeecCCCChHHHHHHHHHHhhhc
Q 030429 149 VCCYMISCKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 149 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 176 (177)
.+++++||+++.|+++++++|.+.+.+.
T Consensus 302 ~~i~~iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 302 PKVFPISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred CcEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 3689999999999999999999887653
No 164
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=7.1e-24 Score=148.66 Aligned_cols=162 Identities=28% Similarity=0.429 Sum_probs=120.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEE--eC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT--KG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~--~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
.+||+++|++|||||||++++.++.+...+.++.+....... .. .+.+.+|||+|+++++..+..+..+++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 489999999999999999999999999888887665554432 22 57799999999999999999999999999999
Q ss_pred EeCCCCCCHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHH-HHHHh----------Cccccc-CCceeEEEe
Q 030429 88 VDAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQA-LVDQL----------GLESIT-DREVCCYMI 154 (177)
Q Consensus 88 ~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~-~~~~~----------~~~~~~-~~~~~~~~~ 154 (177)
+|.++..++.+. ..|...+... .....|+++|+||+|+........ ....+ ...... .....++++
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELREL-APDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHh-CCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 999995555555 4555454443 324689999999999977543211 11110 000000 112238999
Q ss_pred eec--CCCChHHHHHHHHHHhh
Q 030429 155 SCK--DSINIDAVIDWLIKHSK 174 (177)
Q Consensus 155 Sa~--~~~~i~~l~~~l~~~~~ 174 (177)
|++ .+.+++++|..+...+.
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~ 185 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLL 185 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHH
Confidence 999 99999999999998775
No 165
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.92 E-value=3.1e-24 Score=148.68 Aligned_cols=160 Identities=17% Similarity=0.160 Sum_probs=102.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCC-----CCCccceeEEEEE---------------------------------e
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSED-----MIPTVGFNMRKVT---------------------------------K 54 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~-----~~~t~~~~~~~~~---------------------------------~ 54 (177)
++|+++|+.|+|||||++.+.+...... ...+......... .
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999974311110 0111111111100 0
Q ss_pred CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHH
Q 030429 55 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQA 134 (177)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~ 134 (177)
....+.+|||||+..+.......+..+|++++|+|++++.........+..+... ...|+++|+||+|+.+......
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~~ 157 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQALE 157 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHHH
Confidence 1268999999999998887778888899999999998743222222233322222 2357999999999976433222
Q ss_pred HHHHhCcc--cccCCceeEEEeeecCCCChHHHHHHHHHHhhh
Q 030429 135 LVDQLGLE--SITDREVCCYMISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 135 ~~~~~~~~--~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
..+.+... .......+++++||++|.|+++++++|.+.+..
T Consensus 158 ~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 158 NYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 22222111 111234579999999999999999999987754
No 166
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.92 E-value=1.3e-23 Score=145.00 Aligned_cols=162 Identities=20% Similarity=0.224 Sum_probs=105.5
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-EEeCCEEEEEEecCCc----------hhhHHhHHH
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTKGNVTIKLWDLGGQ----------RRFRTMWER 76 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~D~~g~----------~~~~~~~~~ 76 (177)
..+...+|+++|.+|+|||||++++++..+.....++.+.+... ...-+..+.+|||||. ..+......
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 34566899999999999999999999765444433333322111 1112478999999994 334444444
Q ss_pred HhcC---CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEE
Q 030429 77 YCRG---VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYM 153 (177)
Q Consensus 77 ~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (177)
++.. .+++++|+|++++..... .++...+.. .+.|+++++||+|+.+..+.+...+.+.... .....++++
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l-~~~~~~~~~ 173 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKAL-KFGDDEVIL 173 (196)
T ss_pred HHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHH-HhcCCceEE
Confidence 5544 467888899877544332 222233222 3689999999999976544433332222111 111457899
Q ss_pred eeecCCCChHHHHHHHHHHhhh
Q 030429 154 ISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 154 ~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
+||+++.|++++++.|.+.+++
T Consensus 174 ~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 174 FSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred EEcCCCCCHHHHHHHHHHHhcC
Confidence 9999999999999999988875
No 167
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.92 E-value=4.4e-25 Score=148.41 Aligned_cols=163 Identities=21% Similarity=0.293 Sum_probs=124.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE---EEE-eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVT-KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~---~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
..+|++++|+..+|||+|+..+..+.|+..+.+|.--++. .+. ...+.+.+|||+||++|..+.+..+.++|++++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~ 82 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLL 82 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEE
Confidence 5689999999999999999999999999999887763332 232 456889999999999998877778999999999
Q ss_pred EEeCCCCCCHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCccc----------ccCCceeEEEee
Q 030429 87 VVDAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES----------ITDREVCCYMIS 155 (177)
Q Consensus 87 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~S 155 (177)
||+++++.++++. ..|+.++.... ++.|+++|++|.|+.+.....+..+..+... .......|++||
T Consensus 83 cfsv~~p~S~~nv~~kW~pEi~~~c--p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 83 CFSVVSPESFENVKSKWIPEIKHHC--PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEcCChhhHHHHHhhhhHHHHhhC--CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 9999999999997 45555554443 6899999999999985432111111111000 011235799999
Q ss_pred ecCCCChHHHHHHHHHHhhh
Q 030429 156 CKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 156 a~~~~~i~~l~~~l~~~~~~ 175 (177)
|++..|++++|+..+..+..
T Consensus 161 a~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred hhhhCCcHHHHHHHHHHHhc
Confidence 99999999999999887654
No 168
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.92 E-value=1.1e-23 Score=140.52 Aligned_cols=142 Identities=20% Similarity=0.231 Sum_probs=94.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCch----hhHHhHHHHhcCCCEEEEEEe
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQR----RFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~~~~~d~~i~v~d 89 (177)
+|+++|.+|+|||||++++.+.. .. ...+ ..+..... .+|||||.. ++.......+.++|++++|+|
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~-~~-~~~~-----~~v~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d 73 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY-TL-ARKT-----QAVEFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHG 73 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC-cc-Cccc-----eEEEECCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEe
Confidence 79999999999999999987432 11 1111 22222221 369999962 222222344789999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHH
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 169 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 169 (177)
+++.+++.. .|+..+ ....|+++++||+|+.+. ..+.+.+.+..... ..+++++||++|.|++++|+.+
T Consensus 74 ~~~~~s~~~--~~~~~~-----~~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~~~---~~p~~~~Sa~~g~gi~~l~~~l 142 (158)
T PRK15467 74 ANDPESRLP--AGLLDI-----GVSKRQIAVISKTDMPDA-DVAATRKLLLETGF---EEPIFELNSHDPQSVQQLVDYL 142 (158)
T ss_pred CCCcccccC--HHHHhc-----cCCCCeEEEEEccccCcc-cHHHHHHHHHHcCC---CCCEEEEECCCccCHHHHHHHH
Confidence 998876532 333332 135789999999998653 33333333222111 1489999999999999999999
Q ss_pred HHHhhh
Q 030429 170 IKHSKT 175 (177)
Q Consensus 170 ~~~~~~ 175 (177)
.+.+.+
T Consensus 143 ~~~~~~ 148 (158)
T PRK15467 143 ASLTKQ 148 (158)
T ss_pred HHhchh
Confidence 987653
No 169
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.92 E-value=1.7e-23 Score=144.92 Aligned_cols=157 Identities=23% Similarity=0.290 Sum_probs=112.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEe----CCEEEEEEecCCchhhHHhHHHHhcCC-CEEEEEE
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK----GNVTIKLWDLGGQRRFRTMWERYCRGV-SAILYVV 88 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~-d~~i~v~ 88 (177)
+|+++|++|||||||+++|..+.+.....++ ......... .+..+.+||+||+.+++..+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999987765554443 223333222 367899999999999998888889998 9999999
Q ss_pred eCCCC-CCHHHHHHHHHHHHcCC--CCCCCcEEEEeeCCCcccccCHHHHHHHhC-----------c-------------
Q 030429 89 DAADR-DSVPIARSELHELLMKP--SLSGIPLLVLGNKIDKSEALSKQALVDQLG-----------L------------- 141 (177)
Q Consensus 89 d~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~-----------~------------- 141 (177)
|+++. .++.....++..++... ....+|+++++||+|+......+.+.+.+. .
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~ 160 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKE 160 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 99987 66777776766654432 124789999999999876433221111110 0
Q ss_pred ---------cccc--CCceeEEEeeecCCC-ChHHHHHHHHH
Q 030429 142 ---------ESIT--DREVCCYMISCKDSI-NIDAVIDWLIK 171 (177)
Q Consensus 142 ---------~~~~--~~~~~~~~~Sa~~~~-~i~~l~~~l~~ 171 (177)
..+. ...+.+.++|++.+. |++.+.+||.+
T Consensus 161 ~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 161 SLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred ccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 0000 125678899998876 69999999864
No 170
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.92 E-value=1.9e-25 Score=145.55 Aligned_cols=156 Identities=25% Similarity=0.416 Sum_probs=133.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
+.-+|++++|..++||||++++++.+-|..++..+++.++.. +...++...+||++|++.|......|++++.+.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 456899999999999999999999999999999988866655 4566788899999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH-----HHHHHHhCcccccCCceeEEEeeecCCC
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-----QALVDQLGLESITDREVCCYMISCKDSI 160 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (177)
+||+-+|..+|+....|...+.... ..+|.++|-||+|+.+.... +-+.+.+.. .++-+|++...
T Consensus 98 LVFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~--------RlyRtSvked~ 167 (246)
T KOG4252|consen 98 LVFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHK--------RLYRTSVKEDF 167 (246)
T ss_pred EEEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhh--------hhhhhhhhhhh
Confidence 9999999999999999999986664 47999999999999875332 223333332 47789999999
Q ss_pred ChHHHHHHHHHHhhh
Q 030429 161 NIDAVIDWLIKHSKT 175 (177)
Q Consensus 161 ~i~~l~~~l~~~~~~ 175 (177)
|+..+|..|.+.+.+
T Consensus 168 NV~~vF~YLaeK~~q 182 (246)
T KOG4252|consen 168 NVMHVFAYLAEKLTQ 182 (246)
T ss_pred hhHHHHHHHHHHHHH
Confidence 999999999988764
No 171
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.91 E-value=4.8e-23 Score=165.43 Aligned_cols=161 Identities=17% Similarity=0.115 Sum_probs=113.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEEeCCEEEEEEecCCchh----------hHHh-HH
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR----------FRTM-WE 75 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~-~~ 75 (177)
+...+|+++|.+|||||||+|++++... ......|.......+..++..+.+|||||..+ +... ..
T Consensus 448 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~ 527 (712)
T PRK09518 448 SGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQ 527 (712)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHH
Confidence 3458999999999999999999997763 22223344444445667788899999999531 2111 12
Q ss_pred HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEee
Q 030429 76 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMIS 155 (177)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 155 (177)
.+++.+|++++|+|+++..+..... ++..+.. .++|+++|+||+|+.+....+.+.+.+..........+++++|
T Consensus 528 ~~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iS 602 (712)
T PRK09518 528 AAIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLS 602 (712)
T ss_pred HHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEE
Confidence 3478899999999999987776654 3333333 3689999999999976543333333333222223445789999
Q ss_pred ecCCCChHHHHHHHHHHhhh
Q 030429 156 CKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 156 a~~~~~i~~l~~~l~~~~~~ 175 (177)
|++|.|++++++.+.+...+
T Consensus 603 Aktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 603 AKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999987754
No 172
>PRK00089 era GTPase Era; Reviewed
Probab=99.91 E-value=7.1e-23 Score=149.40 Aligned_cols=157 Identities=23% Similarity=0.237 Sum_probs=105.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEE-EEEeCCEEEEEEecCCchhhH--------HhHHHHhc
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMR-KVTKGNVTIKLWDLGGQRRFR--------TMWERYCR 79 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~-~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~~ 79 (177)
+.-.|+++|.+|||||||+|++++...... ...|...... ....++.++.+|||||..... ......+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 345699999999999999999997664321 2222222222 233456899999999964332 22234578
Q ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-ccCHHHHHHHhCcccccCCceeEEEeeecC
Q 030429 80 GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE-ALSKQALVDQLGLESITDREVCCYMISCKD 158 (177)
Q Consensus 80 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (177)
++|++++|+|++++ +.....++...+.. .+.|+++|+||+|+.. ........+.+... ....+++++||++
T Consensus 84 ~~D~il~vvd~~~~--~~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~---~~~~~i~~iSA~~ 155 (292)
T PRK00089 84 DVDLVLFVVDADEK--IGPGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSEL---MDFAEIVPISALK 155 (292)
T ss_pred cCCEEEEEEeCCCC--CChhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHhh---CCCCeEEEecCCC
Confidence 89999999999873 22233333333332 3689999999999973 33333334443321 1245799999999
Q ss_pred CCChHHHHHHHHHHhhh
Q 030429 159 SINIDAVIDWLIKHSKT 175 (177)
Q Consensus 159 ~~~i~~l~~~l~~~~~~ 175 (177)
+.|+++++++|.+.+..
T Consensus 156 ~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 156 GDNVDELLDVIAKYLPE 172 (292)
T ss_pred CCCHHHHHHHHHHhCCC
Confidence 99999999999988754
No 173
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=7.3e-23 Score=153.38 Aligned_cols=170 Identities=20% Similarity=0.214 Sum_probs=117.3
Q ss_pred ecccccceeEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEeCC-EEEEEEecCCchhhH-------HhH
Q 030429 5 ISLFFKQEMELSLIGLQNAGKTSLVNTIATGGYS--EDMIPTVGFNMRKVTKGN-VTIKLWDLGGQRRFR-------TMW 74 (177)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~-------~~~ 74 (177)
..++.+.-..|+|+|.||||||||+|++++.... .....|.......+...+ ..+.++||||..... ...
T Consensus 152 ~~lelk~iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~ 231 (390)
T PRK12298 152 LKLELKLLADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRF 231 (390)
T ss_pred EEEeeeccccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHH
Confidence 4455666678999999999999999999965532 223345556666666654 469999999964311 112
Q ss_pred HHHhcCCCEEEEEEeCC---CCCCHHHHHHHHHHHHcCC-CCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCcee
Q 030429 75 ERYCRGVSAILYVVDAA---DRDSVPIARSELHELLMKP-SLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVC 150 (177)
Q Consensus 75 ~~~~~~~d~~i~v~d~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (177)
..++..+|++++|+|++ +.+.++....+...+.... ....+|+++|+||+|+.+.....+..+.+.... ....+
T Consensus 232 l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~--~~~~~ 309 (390)
T PRK12298 232 LKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEAL--GWEGP 309 (390)
T ss_pred HHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHh--CCCCC
Confidence 24578899999999998 4556666666666665431 123589999999999976543333333322111 11125
Q ss_pred EEEeeecCCCChHHHHHHHHHHhhhc
Q 030429 151 CYMISCKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 151 ~~~~Sa~~~~~i~~l~~~l~~~~~~~ 176 (177)
++++||+++.|++++++.|.+.+.+.
T Consensus 310 Vi~ISA~tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 310 VYLISAASGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred EEEEECCCCcCHHHHHHHHHHHhhhC
Confidence 89999999999999999999988653
No 174
>COG1159 Era GTPase [General function prediction only]
Probab=99.91 E-value=5.4e-23 Score=145.04 Aligned_cols=158 Identities=23% Similarity=0.200 Sum_probs=111.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEEeCCEEEEEEecCCchhh--------HHhHHHHhc
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF--------RTMWERYCR 79 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~~ 79 (177)
+.-.|+++|.|++|||||+|++++... .+....|-......+..++.++.++||||...- .......+.
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~ 84 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALK 84 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence 455789999999999999999998764 333334444444556778999999999993322 222234578
Q ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC-HHHHHHHhCcccccCCceeEEEeeecC
Q 030429 80 GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKD 158 (177)
Q Consensus 80 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (177)
++|++++|+|++.+..- ...+..+.+.. .+.|+++++||+|...... ...+.+.+.. ...+..++++||++
T Consensus 85 dvDlilfvvd~~~~~~~--~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~---~~~f~~ivpiSA~~ 156 (298)
T COG1159 85 DVDLILFVVDADEGWGP--GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKK---LLPFKEIVPISALK 156 (298)
T ss_pred cCcEEEEEEeccccCCc--cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHh---hCCcceEEEeeccc
Confidence 89999999999774322 22333333333 4689999999999987755 2334443332 22334799999999
Q ss_pred CCChHHHHHHHHHHhhhc
Q 030429 159 SINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 159 ~~~i~~l~~~l~~~~~~~ 176 (177)
|.|++.|.+.+...+.+.
T Consensus 157 g~n~~~L~~~i~~~Lpeg 174 (298)
T COG1159 157 GDNVDTLLEIIKEYLPEG 174 (298)
T ss_pred cCCHHHHHHHHHHhCCCC
Confidence 999999999999988653
No 175
>PTZ00099 rab6; Provisional
Probab=99.91 E-value=7.4e-24 Score=143.46 Aligned_cols=136 Identities=21% Similarity=0.366 Sum_probs=105.9
Q ss_pred CCCCCCCCCccceeEEE--EE--eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCC
Q 030429 35 GGYSEDMIPTVGFNMRK--VT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKP 110 (177)
Q Consensus 35 ~~~~~~~~~t~~~~~~~--~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 110 (177)
+.|...+.+|.+..+.. +. .+.+.+.+|||||++++...+..+++++|++++|||++++.+++....|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 35667778888866643 23 345889999999999999999999999999999999999999999999988886653
Q ss_pred CCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHHHhhhc
Q 030429 111 SLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 111 ~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 176 (177)
. ...|+++|+||+|+.+.. ..++..... ......++++||++|.|++++|++|.+.+.+.
T Consensus 83 ~-~~~piilVgNK~DL~~~~~v~~~e~~~~~-----~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~ 144 (176)
T PTZ00099 83 G-KDVIIALVGNKTDLGDLRKVTYEEGMQKA-----QEYNTMFHETSAKAGHNIKVLFKKIAAKLPNL 144 (176)
T ss_pred C-CCCeEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 2 568999999999986432 222222221 11234689999999999999999999988653
No 176
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=8.4e-23 Score=156.52 Aligned_cols=160 Identities=18% Similarity=0.144 Sum_probs=110.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEeCCEEEEEEecCCchhhH---------H--hHH
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR---------T--MWE 75 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~--~~~ 75 (177)
...++|+++|.+|+|||||++++++.... .....|.......+..++..+.+|||||..+.. . ...
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 45799999999999999999999965421 112223333334455678889999999953221 1 112
Q ss_pred HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEee
Q 030429 76 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMIS 155 (177)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 155 (177)
.++..+|++++|+|++++.+.... ..+..+.. .+.|+++|+||+|+.+....++..+.+..........+++++|
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~----~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~S 325 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDL-RIAGLALE----AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFIS 325 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEe
Confidence 357789999999999987665543 22222222 3689999999999985444444444443333333557899999
Q ss_pred ecCCCChHHHHHHHHHHhh
Q 030429 156 CKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 156 a~~~~~i~~l~~~l~~~~~ 174 (177)
|++|.|++++++.+.+...
T Consensus 326 A~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 326 ALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999887654
No 177
>PRK11058 GTPase HflX; Provisional
Probab=99.91 E-value=1e-22 Score=154.18 Aligned_cols=153 Identities=24% Similarity=0.264 Sum_probs=105.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEEeCCE-EEEEEecCCchhh--HHhH------HHHhcCC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSE--DMIPTVGFNMRKVTKGNV-TIKLWDLGGQRRF--RTMW------ERYCRGV 81 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~-~~~~~D~~g~~~~--~~~~------~~~~~~~ 81 (177)
.+|+++|.+|+|||||+|+|++..+.. ....|.......+...+. .+.+|||||..+. ...+ ...+..+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 589999999999999999999765432 234555555556655543 8899999997331 1222 2346789
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCcee-EEEeeecCCC
Q 030429 82 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVC-CYMISCKDSI 160 (177)
Q Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~ 160 (177)
|++++|+|++++.+......+...+ ......++|+++|+||+|+.+.... .. .... .+.+ ++++||++|.
T Consensus 278 DlIL~VvDaS~~~~~e~l~~v~~iL-~el~~~~~pvIiV~NKiDL~~~~~~-~~-~~~~------~~~~~~v~ISAktG~ 348 (426)
T PRK11058 278 TLLLHVVDAADVRVQENIEAVNTVL-EEIDAHEIPTLLVMNKIDMLDDFEP-RI-DRDE------ENKPIRVWLSAQTGA 348 (426)
T ss_pred CEEEEEEeCCCccHHHHHHHHHHHH-HHhccCCCCEEEEEEcccCCCchhH-HH-HHHh------cCCCceEEEeCCCCC
Confidence 9999999999988777654332222 2222246899999999999653211 11 1110 1112 5789999999
Q ss_pred ChHHHHHHHHHHhh
Q 030429 161 NIDAVIDWLIKHSK 174 (177)
Q Consensus 161 ~i~~l~~~l~~~~~ 174 (177)
|+++++++|.+.+.
T Consensus 349 GIdeL~e~I~~~l~ 362 (426)
T PRK11058 349 GIPLLFQALTERLS 362 (426)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999998874
No 178
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.91 E-value=1.4e-22 Score=135.83 Aligned_cols=154 Identities=23% Similarity=0.211 Sum_probs=102.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC---CccceeEEEEEeCCEEEEEEecCCchhhHH--------hHHHHhcC
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMI---PTVGFNMRKVTKGNVTIKLWDLGGQRRFRT--------MWERYCRG 80 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~ 80 (177)
..+|+++|++|+|||||++++.+........ .+...........+..+.+||+||...... .....+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999998664322111 111122222345568899999999643322 23345778
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-ccCHHHHHHHhCcccccCCceeEEEeeecCC
Q 030429 81 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE-ALSKQALVDQLGLESITDREVCCYMISCKDS 159 (177)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 159 (177)
+|++++|+|++++. .....++...... .+.|+++|+||+|+.. .....+..+.+... ....+++++|++++
T Consensus 83 ~d~i~~v~d~~~~~--~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~ 154 (168)
T cd04163 83 VDLVLFVVDASEPI--GEGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKEL---GPFAEIFPISALKG 154 (168)
T ss_pred CCEEEEEEECCCcc--CchHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhc---cCCCceEEEEeccC
Confidence 99999999998872 2222233333222 2589999999999973 33333444443322 22347899999999
Q ss_pred CChHHHHHHHHHHh
Q 030429 160 INIDAVIDWLIKHS 173 (177)
Q Consensus 160 ~~i~~l~~~l~~~~ 173 (177)
.|++++++.|.+.+
T Consensus 155 ~~~~~l~~~l~~~~ 168 (168)
T cd04163 155 ENVDELLEEIVKYL 168 (168)
T ss_pred CChHHHHHHHHhhC
Confidence 99999999998753
No 179
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.90 E-value=1e-22 Score=138.68 Aligned_cols=149 Identities=21% Similarity=0.283 Sum_probs=94.5
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEeCCEEEEEEecCCch----------hhHHh
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGNVTIKLWDLGGQR----------RFRTM 73 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~g~~----------~~~~~ 73 (177)
.+...+..+|+++|.+|+|||||++++++..+.....++.+.+. ..+..++ .+.+|||||.. .+...
T Consensus 12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND-GFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC-cEEEEeCCCCccccCChhHHHHHHHH
Confidence 34457789999999999999999999997653333333332211 1122222 68999999942 23333
Q ss_pred HHHHhc---CCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHH----HHHHHhCcccccC
Q 030429 74 WERYCR---GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ----ALVDQLGLESITD 146 (177)
Q Consensus 74 ~~~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~----~~~~~~~~~~~~~ 146 (177)
...+++ .++++++|+|++++-+.... .+...+.. .+.|+++++||+|+.+..+.+ ++.+.+... .
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~---~ 162 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD---A 162 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc---c
Confidence 344444 36899999999875444333 22233332 368999999999997643332 233333221 1
Q ss_pred CceeEEEeeecCCCChH
Q 030429 147 REVCCYMISCKDSINID 163 (177)
Q Consensus 147 ~~~~~~~~Sa~~~~~i~ 163 (177)
...+++++||++|+|++
T Consensus 163 ~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 163 DDPSVQLFSSLKKTGID 179 (179)
T ss_pred CCCceEEEECCCCCCCC
Confidence 23479999999999974
No 180
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.90 E-value=2e-22 Score=154.22 Aligned_cols=149 Identities=22% Similarity=0.242 Sum_probs=105.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEeCCEEEEEEecCCc--------hhhHHhHHHHhcCCC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQ--------RRFRTMWERYCRGVS 82 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~--------~~~~~~~~~~~~~~d 82 (177)
+|+++|.+|||||||+|++++.... .....|..........++..+.+|||||. ..+......+++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 5899999999999999999976531 22233444555666778889999999995 344455566788999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 83 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 83 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
++++|+|+.+..+... ..+...+.. .++|+++|+||+|..+..... .+... .....++++||++|.|+
T Consensus 81 ~vl~vvD~~~~~~~~d--~~i~~~l~~---~~~piilVvNK~D~~~~~~~~--~~~~~-----lg~~~~~~vSa~~g~gv 148 (429)
T TIGR03594 81 VILFVVDGREGLTPED--EEIAKWLRK---SGKPVILVANKIDGKKEDAVA--AEFYS-----LGFGEPIPISAEHGRGI 148 (429)
T ss_pred EEEEEEeCCCCCCHHH--HHHHHHHHH---hCCCEEEEEECccCCcccccH--HHHHh-----cCCCCeEEEeCCcCCCh
Confidence 9999999977533322 223333332 368999999999987643211 11111 11225899999999999
Q ss_pred HHHHHHHHHHhh
Q 030429 163 DAVIDWLIKHSK 174 (177)
Q Consensus 163 ~~l~~~l~~~~~ 174 (177)
+++++++.+.+.
T Consensus 149 ~~ll~~i~~~l~ 160 (429)
T TIGR03594 149 GDLLDAILELLP 160 (429)
T ss_pred HHHHHHHHHhcC
Confidence 999999998764
No 181
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.90 E-value=2.2e-22 Score=157.43 Aligned_cols=157 Identities=21% Similarity=0.281 Sum_probs=110.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEEeCCE-EEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKGNV-TIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
..+..+|+++|++++|||||++++.+..+.....+ |.......+..++. .+.+|||||+..|..++...+..+|+++
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 45678999999999999999999997766554332 33333334444444 8999999999999998888899999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccc----cCCceeEEEeeecCCCC
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI----TDREVCCYMISCKDSIN 161 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~ 161 (177)
+|+|+++....... ..+... ...++|+++++||+|+.+. ..++..+.+..... +....+++++||++|.|
T Consensus 164 LVVda~dgv~~qT~-e~i~~~----~~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG 237 (587)
T TIGR00487 164 LVVAADDGVMPQTI-EAISHA----KAANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG 237 (587)
T ss_pred EEEECCCCCCHhHH-HHHHHH----HHcCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence 99999775322222 222222 1246899999999999653 23333333321111 11235799999999999
Q ss_pred hHHHHHHHHH
Q 030429 162 IDAVIDWLIK 171 (177)
Q Consensus 162 i~~l~~~l~~ 171 (177)
+++++++|..
T Consensus 238 I~eLl~~I~~ 247 (587)
T TIGR00487 238 IDELLDMILL 247 (587)
T ss_pred hHHHHHhhhh
Confidence 9999999865
No 182
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.90 E-value=1.8e-22 Score=158.36 Aligned_cols=158 Identities=20% Similarity=0.173 Sum_probs=110.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC---CCCCC--CCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGG---YSEDM--IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~---~~~~~--~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
+.|+++|++++|||||+++|.+.. +.... ..|.......+..++..+.+||+||+++|...+...+.++|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 479999999999999999998532 22222 2344455555667779999999999999988888889999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCcccccCHHHHHHHhCcc--cc-cCCceeEEEeeecCCCChH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALSKQALVDQLGLE--SI-TDREVCCYMISCKDSINID 163 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~Sa~~~~~i~ 163 (177)
+|+++... ......+..+ .. .++| +++|+||+|+.+....+...+.+... .. .....+++++||++|.|++
T Consensus 81 VDa~~G~~-~qT~ehl~il-~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~ 155 (581)
T TIGR00475 81 VDADEGVM-TQTGEHLAVL-DL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIG 155 (581)
T ss_pred EECCCCCc-HHHHHHHHHH-HH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCch
Confidence 99987432 2222222222 22 2567 99999999997654322222222110 11 1124689999999999999
Q ss_pred HHHHHHHHHhhh
Q 030429 164 AVIDWLIKHSKT 175 (177)
Q Consensus 164 ~l~~~l~~~~~~ 175 (177)
++++.|.+.+..
T Consensus 156 eL~~~L~~l~~~ 167 (581)
T TIGR00475 156 ELKKELKNLLES 167 (581)
T ss_pred hHHHHHHHHHHh
Confidence 999999877653
No 183
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.90 E-value=2.1e-22 Score=133.89 Aligned_cols=152 Identities=25% Similarity=0.172 Sum_probs=105.5
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCC---CCCCccceeEEEEEeC-CEEEEEEecCCchhhH-------HhHHHHhcCCCEEE
Q 030429 17 LIGLQNAGKTSLVNTIATGGYSE---DMIPTVGFNMRKVTKG-NVTIKLWDLGGQRRFR-------TMWERYCRGVSAIL 85 (177)
Q Consensus 17 i~G~~~~GKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~-------~~~~~~~~~~d~~i 85 (177)
++|++|||||||++++.+..... ....+........... ...+.+||+||...+. .....++..+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 58999999999999998654431 1112222333333333 6789999999965543 23445778899999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|+|+++........ +..... ..+.|+++|+||+|+..........+............+++++|++++.|++++
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 81 FVVDADLRADEEEEK-LLELLR----ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHHHH----hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 999999887766654 223322 247899999999999876554444322222233345668999999999999999
Q ss_pred HHHHHHHh
Q 030429 166 IDWLIKHS 173 (177)
Q Consensus 166 ~~~l~~~~ 173 (177)
++++.+.+
T Consensus 156 ~~~l~~~~ 163 (163)
T cd00880 156 REALIEAL 163 (163)
T ss_pred HHHHHhhC
Confidence 99998753
No 184
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.90 E-value=2.6e-22 Score=157.59 Aligned_cols=156 Identities=19% Similarity=0.197 Sum_probs=108.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC-------CCCCC----------CCccceeEEEEEe-----CCEEEEEEecCCchh
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGG-------YSEDM----------IPTVGFNMRKVTK-----GNVTIKLWDLGGQRR 69 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~-------~~~~~----------~~t~~~~~~~~~~-----~~~~~~~~D~~g~~~ 69 (177)
--||+++|+.++|||||+++|+... +.... ..|.......+.+ ..+.+++|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 3489999999999999999998542 11111 1122222222222 238899999999999
Q ss_pred hHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCce
Q 030429 70 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREV 149 (177)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 149 (177)
|...+..++..+|++++|+|+++..+......|+... . .+.|+++|+||+|+.+.. .++..+.+... ......
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~-~~~~~~el~~~-lg~~~~ 155 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSAD-PERVKKEIEEV-IGLDAS 155 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccC-HHHHHHHHHHH-hCCCcc
Confidence 9999999999999999999999877776655554433 2 267999999999986532 22222222111 111122
Q ss_pred eEEEeeecCCCChHHHHHHHHHHhh
Q 030429 150 CCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 150 ~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
.++++||++|.|+++++++|.+.+.
T Consensus 156 ~vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 156 EAILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred eEEEeeccCCCCHHHHHHHHHHhCC
Confidence 5899999999999999999998765
No 185
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=3.1e-22 Score=153.41 Aligned_cols=148 Identities=22% Similarity=0.228 Sum_probs=102.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEEeCCEEEEEEecCCchh--------hHHhHHHHhcCC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR--------FRTMWERYCRGV 81 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~~~ 81 (177)
.+|+++|.+|||||||+|++.+... ......|..........++..+.+|||||... .......++..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 4799999999999999999997653 22222344455556677789999999999876 223344567899
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCC
Q 030429 82 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSIN 161 (177)
Q Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 161 (177)
|++++|+|++++.+... .++..++.. .+.|+++|+||+|..+.. ....+.... ....++++||++|.|
T Consensus 82 d~il~vvd~~~~~~~~~--~~~~~~l~~---~~~piilv~NK~D~~~~~--~~~~~~~~l-----g~~~~~~iSa~~g~g 149 (435)
T PRK00093 82 DVILFVVDGRAGLTPAD--EEIAKILRK---SNKPVILVVNKVDGPDEE--ADAYEFYSL-----GLGEPYPISAEHGRG 149 (435)
T ss_pred CEEEEEEECCCCCCHHH--HHHHHHHHH---cCCcEEEEEECccCccch--hhHHHHHhc-----CCCCCEEEEeeCCCC
Confidence 99999999987533322 222232222 268999999999975421 122222111 111378999999999
Q ss_pred hHHHHHHHHHH
Q 030429 162 IDAVIDWLIKH 172 (177)
Q Consensus 162 i~~l~~~l~~~ 172 (177)
++++++.+.+.
T Consensus 150 v~~l~~~I~~~ 160 (435)
T PRK00093 150 IGDLLDAILEE 160 (435)
T ss_pred HHHHHHHHHhh
Confidence 99999999873
No 186
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.90 E-value=3.6e-22 Score=159.70 Aligned_cols=158 Identities=21% Similarity=0.279 Sum_probs=113.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
..+...|+++|..++|||||+++|.+..+...... |..+....+..++..+++|||||+..|..++...+..+|++++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 56788999999999999999999987665443222 3333444566677899999999999999988888999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccc----cCCceeEEEeeecCCCCh
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI----TDREVCCYMISCKDSINI 162 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~i 162 (177)
|+|+++...-.. ...+... ...++|+++++||+|+.+. ..+++...+..... +...++++++||++|.|+
T Consensus 367 VVdAddGv~~qT-~e~i~~a----~~~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI 440 (787)
T PRK05306 367 VVAADDGVMPQT-IEAINHA----KAAGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI 440 (787)
T ss_pred EEECCCCCCHhH-HHHHHHH----HhcCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence 999987532222 2222222 2246899999999999653 22333332211111 123468999999999999
Q ss_pred HHHHHHHHHH
Q 030429 163 DAVIDWLIKH 172 (177)
Q Consensus 163 ~~l~~~l~~~ 172 (177)
++++++|...
T Consensus 441 ~eLle~I~~~ 450 (787)
T PRK05306 441 DELLEAILLQ 450 (787)
T ss_pred hHHHHhhhhh
Confidence 9999998753
No 187
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.90 E-value=1.2e-23 Score=134.00 Aligned_cols=110 Identities=25% Similarity=0.512 Sum_probs=80.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC--C----CCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSE--D----MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~--~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
||+++|++|||||||+++|.++.+.. . ...+..............+.+||++|+..+...+...+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 79999999999999999999877661 1 11222223333334445699999999988887777778899999999
Q ss_pred EeCCCCCCHHHHHHH---HHHHHcCCCCCCCcEEEEeeCCC
Q 030429 88 VDAADRDSVPIARSE---LHELLMKPSLSGIPLLVLGNKID 125 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~iiv~nK~D 125 (177)
||+++++++..+..+ +..+... ..+.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 999999999887444 4444332 24599999999998
No 188
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.90 E-value=4.8e-22 Score=147.40 Aligned_cols=159 Identities=19% Similarity=0.204 Sum_probs=123.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCC---CCCCCCCccceeEEEEEeCCEEEEEEecCCchh----------hH-HhHHH
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGG---YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR----------FR-TMWER 76 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~----------~~-~~~~~ 76 (177)
..++|+++|.|++|||||+|++++.. .....+.|.......++.++..+.++||+|.++ |. .....
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 56999999999999999999999665 344455677777778889999999999999432 21 11123
Q ss_pred HhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--cCHHHHHHHhCcccccCCceeEEEe
Q 030429 77 YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA--LSKQALVDQLGLESITDREVCCYMI 154 (177)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (177)
.+..+|++++|+|++.+ +.+....+..+... .+.++++|+||+|+.+. ...++..+.+.........++.+++
T Consensus 257 aI~~a~vvllviDa~~~--~~~qD~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i 331 (444)
T COG1160 257 AIERADVVLLVIDATEG--ISEQDLRIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI 331 (444)
T ss_pred HHhhcCEEEEEEECCCC--chHHHHHHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence 46779999999999775 45555555555554 57899999999999875 4456666666665566678899999
Q ss_pred eecCCCChHHHHHHHHHHhh
Q 030429 155 SCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 155 Sa~~~~~i~~l~~~l~~~~~ 174 (177)
||++|.+++++|+.+.....
T Consensus 332 SA~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 332 SALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred EecCCCChHHHHHHHHHHHH
Confidence 99999999999999987654
No 189
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.89 E-value=1.3e-21 Score=155.35 Aligned_cols=159 Identities=19% Similarity=0.273 Sum_probs=111.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEE--EEe--CCEEEEEEecCCchhhHHhHHHHhcCCC
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMI--PTVGFNMRK--VTK--GNVTIKLWDLGGQRRFRTMWERYCRGVS 82 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d 82 (177)
.++..+|+++|.+++|||||++++....+..... .|....... +.. .+..+.+|||||+..|..++..++..+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 4577899999999999999999998766543322 222222222 222 4589999999999999999988999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccc----cCCceeEEEeeecC
Q 030429 83 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI----TDREVCCYMISCKD 158 (177)
Q Consensus 83 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~ 158 (177)
++++|+|+++....... ..+..+ . ..++|+++++||+|+.+. ..++..+.+..... ....++++++||++
T Consensus 321 iaILVVDA~dGv~~QT~-E~I~~~-k---~~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt 394 (742)
T CHL00189 321 IAILIIAADDGVKPQTI-EAINYI-Q---AANVPIIVAINKIDKANA-NTERIKQQLAKYNLIPEKWGGDTPMIPISASQ 394 (742)
T ss_pred EEEEEEECcCCCChhhH-HHHHHH-H---hcCceEEEEEECCCcccc-CHHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence 99999999875433222 222222 1 246899999999999763 23333333321110 12246899999999
Q ss_pred CCChHHHHHHHHHHh
Q 030429 159 SINIDAVIDWLIKHS 173 (177)
Q Consensus 159 ~~~i~~l~~~l~~~~ 173 (177)
|.|+++|+++|...+
T Consensus 395 G~GIdeLle~I~~l~ 409 (742)
T CHL00189 395 GTNIDKLLETILLLA 409 (742)
T ss_pred CCCHHHHHHhhhhhh
Confidence 999999999998754
No 190
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.89 E-value=5.2e-22 Score=147.24 Aligned_cols=149 Identities=22% Similarity=0.203 Sum_probs=109.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEEeCCEEEEEEecCCchhh---------HHhHHHHhcC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF---------RTMWERYCRG 80 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~~~ 80 (177)
..|+++|.||||||||+|||++... ....+-|..-.+......+..|.++||+|-+.. .......+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 5799999999999999999997663 444555666777778888889999999995422 2233446788
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCC
Q 030429 81 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSI 160 (177)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (177)
||++++|+|+.. ........+..++.. .++|+++|+||+|....+ ....+.+.+ ..-..+++||.+|.
T Consensus 84 ADvilfvVD~~~--Git~~D~~ia~~Lr~---~~kpviLvvNK~D~~~~e--~~~~efysl-----G~g~~~~ISA~Hg~ 151 (444)
T COG1160 84 ADVILFVVDGRE--GITPADEEIAKILRR---SKKPVILVVNKIDNLKAE--ELAYEFYSL-----GFGEPVPISAEHGR 151 (444)
T ss_pred CCEEEEEEeCCC--CCCHHHHHHHHHHHh---cCCCEEEEEEcccCchhh--hhHHHHHhc-----CCCCceEeehhhcc
Confidence 999999999944 344444455555443 469999999999987432 222222221 12258999999999
Q ss_pred ChHHHHHHHHHHh
Q 030429 161 NIDAVIDWLIKHS 173 (177)
Q Consensus 161 ~i~~l~~~l~~~~ 173 (177)
|+.+|++.+.+.+
T Consensus 152 Gi~dLld~v~~~l 164 (444)
T COG1160 152 GIGDLLDAVLELL 164 (444)
T ss_pred CHHHHHHHHHhhc
Confidence 9999999999886
No 191
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.89 E-value=1.1e-21 Score=157.74 Aligned_cols=157 Identities=20% Similarity=0.192 Sum_probs=106.5
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEEeCCEEEEEEecCCchh--------hHHhHH
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR--------FRTMWE 75 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~ 75 (177)
+.+....+|+++|.+|||||||+|++++... ......|........+.++..+.+|||||... +.....
T Consensus 270 ~~~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~ 349 (712)
T PRK09518 270 AGPKAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQ 349 (712)
T ss_pred cccccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHH
Confidence 3445567899999999999999999997643 11122233333334556788999999999653 334445
Q ss_pred HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEee
Q 030429 76 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMIS 155 (177)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 155 (177)
.++..+|++++|+|+++. +......+...+.. .++|+++|+||+|+.+... ...+.+.. .. ...+++|
T Consensus 350 ~~~~~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~~--~~~~~~~l-g~----~~~~~iS 417 (712)
T PRK09518 350 IAVSLADAVVFVVDGQVG--LTSTDERIVRMLRR---AGKPVVLAVNKIDDQASEY--DAAEFWKL-GL----GEPYPIS 417 (712)
T ss_pred HHHHhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECcccccchh--hHHHHHHc-CC----CCeEEEE
Confidence 578899999999999764 33333333333333 4789999999999865321 12222211 11 1357899
Q ss_pred ecCCCChHHHHHHHHHHhhh
Q 030429 156 CKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 156 a~~~~~i~~l~~~l~~~~~~ 175 (177)
|++|.|+++++++|.+.+.+
T Consensus 418 A~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 418 AMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCCCCCchHHHHHHHHhccc
Confidence 99999999999999987743
No 192
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.89 E-value=4.2e-23 Score=131.60 Aligned_cols=162 Identities=23% Similarity=0.401 Sum_probs=130.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
.+||.++|++..|||||+-.++++.+...+.++.+.+... +..-.+.+.+||++|++++..+.+....++-+++++
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFm 99 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFM 99 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEE
Confidence 5899999999999999999999998888888888866655 234457899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--cCHHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA--LSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|++.++++..+..|+...... +...+|++ |+||-|..-. .+.++.............+++.|+||+.++.|++.+
T Consensus 100 FDLt~r~TLnSi~~WY~QAr~~-NktAiPil-vGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KI 177 (205)
T KOG1673|consen 100 FDLTRRSTLNSIKEWYRQARGL-NKTAIPIL-VGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKI 177 (205)
T ss_pred EecCchHHHHHHHHHHHHHhcc-CCccceEE-eccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHH
Confidence 9999999999999999988554 33557765 5999996432 223333333334444556678999999999999999
Q ss_pred HHHHHHHhhh
Q 030429 166 IDWLIKHSKT 175 (177)
Q Consensus 166 ~~~l~~~~~~ 175 (177)
|..+..++.+
T Consensus 178 FK~vlAklFn 187 (205)
T KOG1673|consen 178 FKIVLAKLFN 187 (205)
T ss_pred HHHHHHHHhC
Confidence 9999887754
No 193
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.89 E-value=1.7e-21 Score=137.41 Aligned_cols=151 Identities=22% Similarity=0.242 Sum_probs=102.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEeCCEEEEEEecCCchhhH-------HhHHHHhcCCCEE
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR-------TMWERYCRGVSAI 84 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~d~~ 84 (177)
+|+++|++|||||||++++.+...... ...|.......+..++..+++||+||..+.. ......++.+|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 789999999999999999997653222 2234445555566788999999999964322 2234568899999
Q ss_pred EEEEeCCCCCC-HHHHHHHHHH----------------------------------------HHc---------------
Q 030429 85 LYVVDAADRDS-VPIARSELHE----------------------------------------LLM--------------- 108 (177)
Q Consensus 85 i~v~d~~~~~~-~~~~~~~~~~----------------------------------------~~~--------------- 108 (177)
++|+|++++.. ...+...+.. ++.
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~ 161 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI 161 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence 99999987542 2222222210 000
Q ss_pred ---------CCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 109 ---------KPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 109 ---------~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
......+|+++|+||+|+.+.++.+. +.. ...++++||+++.|++++++.+.+.+.
T Consensus 162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~~----~~~------~~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 162 TVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDL----LAR------QPNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred CHHHHHHHHhCCceEeeEEEEEECccCCCHHHHHH----Hhc------CCCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 00113469999999999976533221 111 124889999999999999999998764
No 194
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.89 E-value=6.3e-22 Score=151.08 Aligned_cols=155 Identities=19% Similarity=0.153 Sum_probs=103.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCC--C-------------------------------CCCCCCccceeEEEEEeC
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGG--Y-------------------------------SEDMIPTVGFNMRKVTKG 55 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~--~-------------------------------~~~~~~t~~~~~~~~~~~ 55 (177)
.+..++|+++|++++|||||+++|+... . .+....|.......++.+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 3567999999999999999999998321 0 012334555666667778
Q ss_pred CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--H-
Q 030429 56 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--K- 132 (177)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~- 132 (177)
++.+.+|||||+++|.......+..+|++++|+|++++........+...+.... ...|+++++||+|+.+... .
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHH
Confidence 8999999999998887655566788999999999987322222222222222221 1246999999999975211 1
Q ss_pred ---HHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 133 ---QALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 133 ---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+++.+.+....+.....+++++||++|.|++++
T Consensus 161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred HHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence 122222222222223468999999999999873
No 195
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.89 E-value=1.7e-21 Score=144.89 Aligned_cols=153 Identities=20% Similarity=0.236 Sum_probs=113.8
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCC---CCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhH--------HH
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGG---YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMW--------ER 76 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~ 76 (177)
..++.++++++|.||+|||||+|.|++.. +....+.|-......++.+++.+.++||+|.+...... ..
T Consensus 213 ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~ 292 (454)
T COG0486 213 ILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKK 292 (454)
T ss_pred hhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHH
Confidence 34678999999999999999999999765 34445567777888899999999999999966543333 23
Q ss_pred HhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeee
Q 030429 77 YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISC 156 (177)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (177)
.++.||.+++|+|++.+.+-.... +.. ....++|+++|.||.|+......... .+ ....+++.+|+
T Consensus 293 ~i~~ADlvL~v~D~~~~~~~~d~~--~~~----~~~~~~~~i~v~NK~DL~~~~~~~~~--~~------~~~~~~i~iSa 358 (454)
T COG0486 293 AIEEADLVLFVLDASQPLDKEDLA--LIE----LLPKKKPIIVVLNKADLVSKIELESE--KL------ANGDAIISISA 358 (454)
T ss_pred HHHhCCEEEEEEeCCCCCchhhHH--HHH----hcccCCCEEEEEechhcccccccchh--hc------cCCCceEEEEe
Confidence 478899999999998863222211 111 22247899999999999876543222 11 11226899999
Q ss_pred cCCCChHHHHHHHHHHhh
Q 030429 157 KDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 157 ~~~~~i~~l~~~l~~~~~ 174 (177)
++++|++.|.+.|.+...
T Consensus 359 ~t~~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 359 KTGEGLDALREAIKQLFG 376 (454)
T ss_pred cCccCHHHHHHHHHHHHh
Confidence 999999999999988764
No 196
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.88 E-value=1.1e-21 Score=136.48 Aligned_cols=148 Identities=16% Similarity=0.100 Sum_probs=94.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-C--------------------------------CCCCccceeEEEEEeCCEEEE
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYS-E--------------------------------DMIPTVGFNMRKVTKGNVTIK 60 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~-~--------------------------------~~~~t~~~~~~~~~~~~~~~~ 60 (177)
||+++|.+|+|||||+++|+...-. . ....|.......+..++..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 6899999999999999999742210 0 022233344444566788999
Q ss_pred EEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHH
Q 030429 61 LWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQ 138 (177)
Q Consensus 61 ~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~ 138 (177)
+|||||+.+|.......+..+|++++|+|++++..-. .... ..+.... ...++++|+||+|+.+... .....+.
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~-~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRH-SYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHH-HHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 9999999988776677788999999999998753221 1121 2222221 1245788999999875321 1122222
Q ss_pred hCcc--cccCCceeEEEeeecCCCChHHH
Q 030429 139 LGLE--SITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 139 ~~~~--~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+... .......+++++||++|.|+++.
T Consensus 157 ~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 157 YLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 2110 11112356999999999998753
No 197
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.88 E-value=5.2e-22 Score=151.50 Aligned_cols=154 Identities=18% Similarity=0.139 Sum_probs=102.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc--CCCC-------------------------------CCCCCccceeEEEEEeC
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT--GGYS-------------------------------EDMIPTVGFNMRKVTKG 55 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~--~~~~-------------------------------~~~~~t~~~~~~~~~~~ 55 (177)
.+..++|+++|+.++|||||+.+|+. +... +....|.......+..+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 35679999999999999999999984 2111 11223444555556678
Q ss_pred CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHH-HHHHHHcCCCCCCCcEEEEeeCCCcccccC--H
Q 030429 56 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARS-ELHELLMKPSLSGIPLLVLGNKIDKSEALS--K 132 (177)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~ 132 (177)
++.+.+||+||+++|.......+..+|++++|+|+++.++...... +...+.... ...|+++|+||+|+.+... .
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~~ 161 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEEF 161 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHHH
Confidence 8999999999999987766667788999999999998753321111 111122221 2357999999999974211 1
Q ss_pred ----HHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 133 ----QALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 133 ----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
+++.+.+.........++++++||++|.|+++
T Consensus 162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 12222222222222346899999999999986
No 198
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.88 E-value=2.3e-21 Score=133.10 Aligned_cols=146 Identities=18% Similarity=0.137 Sum_probs=97.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCC------------------CCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHh
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGY------------------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM 73 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~------------------~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 73 (177)
.++|+++|..++|||||+++|+.... ......|.......++.++.++.++||||+..|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 57999999999999999999984310 001222333333345567788999999999998887
Q ss_pred HHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCcccccCH-H----HHHHHhCcccccCC
Q 030429 74 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALSK-Q----ALVDQLGLESITDR 147 (177)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~-~----~~~~~~~~~~~~~~ 147 (177)
....+..+|++++|+|++..-. ......+..+... ++| +++++||+|+....+. + ++.+.+....+...
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~----~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~ 156 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPM-PQTREHLLLARQV----GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD 156 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc----CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 7888899999999999976422 2223333333222 466 7788999998643221 1 23333332223334
Q ss_pred ceeEEEeeecCCCCh
Q 030429 148 EVCCYMISCKDSINI 162 (177)
Q Consensus 148 ~~~~~~~Sa~~~~~i 162 (177)
.++++++||.+|.|+
T Consensus 157 ~v~iipiSa~~g~n~ 171 (195)
T cd01884 157 NTPIVRGSALKALEG 171 (195)
T ss_pred CCeEEEeeCccccCC
Confidence 679999999999875
No 199
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.88 E-value=1.4e-21 Score=136.99 Aligned_cols=147 Identities=18% Similarity=0.124 Sum_probs=97.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC--C-------------------------------CCCCCCccceeEEEEEeCCEEEE
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGG--Y-------------------------------SEDMIPTVGFNMRKVTKGNVTIK 60 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~--~-------------------------------~~~~~~t~~~~~~~~~~~~~~~~ 60 (177)
+|+++|++++|||||+.+|+... . ......|.......+..++..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 58999999999999999996210 0 00112233444555677889999
Q ss_pred EEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCC------HHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc----c
Q 030429 61 LWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDS------VPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA----L 130 (177)
Q Consensus 61 ~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~----~ 130 (177)
+|||||+..|.......+..+|++++|+|+++... .......+... ... ...|+++|+||+|+... .
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTL--GVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHc--CCCeEEEEEEccccccccccHH
Confidence 99999998888777777888999999999987421 11222222222 211 23689999999999732 1
Q ss_pred CHHHHHHHh----CcccccCCceeEEEeeecCCCChH
Q 030429 131 SKQALVDQL----GLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 131 ~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
..+++.+.+ .........++++++||++|.|++
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 123333322 222223345789999999999986
No 200
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.88 E-value=2e-21 Score=147.18 Aligned_cols=162 Identities=15% Similarity=0.156 Sum_probs=105.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCC-----CCCccceeEEE----------------E----Ee------CCEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSED-----MIPTVGFNMRK----------------V----TK------GNVT 58 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-----~~~t~~~~~~~----------------~----~~------~~~~ 58 (177)
...++|+++|.+++|||||+++|.+...... ..-|....+.. . +. .+..
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 3578999999999999999999974321110 01111111100 0 01 2468
Q ss_pred EEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHH
Q 030429 59 IKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQ 138 (177)
Q Consensus 59 ~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~ 138 (177)
+.+||+||+++|...+...+..+|++++|+|+++..........+..+... ...|+++++||+|+.+.+...+..+.
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~---gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII---GIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc---CCCeEEEEEEccccCCHHHHHHHHHH
Confidence 999999999999888888888899999999998753122223333322111 23578999999999764332222222
Q ss_pred hCc--ccccCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 139 LGL--ESITDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 139 ~~~--~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
+.. .......++++++||++|.|+++++++|...+.
T Consensus 159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 211 111123568999999999999999999998653
No 201
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.88 E-value=6.2e-21 Score=150.04 Aligned_cols=157 Identities=19% Similarity=0.201 Sum_probs=108.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCC--CCC---------------CCCCccceeEEEEE-----eCCEEEEEEecCCch
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGG--YSE---------------DMIPTVGFNMRKVT-----KGNVTIKLWDLGGQR 68 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~--~~~---------------~~~~t~~~~~~~~~-----~~~~~~~~~D~~g~~ 68 (177)
+--+++++|+.++|||||+.+|+... ... ....|.......+. ..++.+++|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 44589999999999999999998521 110 11122222222232 236889999999999
Q ss_pred hhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCc
Q 030429 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDRE 148 (177)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 148 (177)
+|...+..++..+|++++|+|+++.........|.. ... .+.|+++|+||+|+.+.. .++..+.+... .....
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~-~~~----~~lpiIvViNKiDl~~a~-~~~v~~ei~~~-lg~~~ 158 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYL-ALE----NDLEIIPVLNKIDLPAAD-PERVKQEIEDV-IGIDA 158 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH-HHH----CCCCEEEEEECCCCCccc-HHHHHHHHHHH-hCCCc
Confidence 999989999999999999999988765554444332 222 368999999999986532 22222222111 11112
Q ss_pred eeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 149 VCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 149 ~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
..++++||++|.|+++++++|.+.+.
T Consensus 159 ~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 159 SDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred ceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 24899999999999999999998765
No 202
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.88 E-value=7.1e-21 Score=134.47 Aligned_cols=156 Identities=19% Similarity=0.199 Sum_probs=110.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC--------C------------CCCCCccceeEEEEEeCCEEEEEEecCCchhhHHh
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGY--------S------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM 73 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~--------~------------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 73 (177)
+|+++|++|+|||||+++++...- . .....+.......+..++.++++|||||+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 589999999999999999984211 0 01111333444556788899999999999999988
Q ss_pred HHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc---CHHHHHHHhCc---------
Q 030429 74 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL---SKQALVDQLGL--------- 141 (177)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~---~~~~~~~~~~~--------- 141 (177)
+..+++.+|++++|+|+++.... ....++..... .++|+++++||+|+.... ..+++.+.++.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~ 155 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG 155 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc
Confidence 88899999999999999876433 33344444332 368999999999987421 11222222211
Q ss_pred -----------------------------------------------ccccCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 142 -----------------------------------------------ESITDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 142 -----------------------------------------------~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
.......+|++..||.++.|++.|++.+.+.+.
T Consensus 156 ~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 156 LAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred EeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence 000122578888999999999999999998764
No 203
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.87 E-value=4.7e-21 Score=123.22 Aligned_cols=134 Identities=20% Similarity=0.266 Sum_probs=93.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCC----chhhHHhHHHHhcCCCEEEEEEe
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG----QRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g----~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
||+++|+.|||||||+++|.+.... +..|..+.+. + .++|||| +..+...+.....++|++++|.|
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~--~~KTq~i~~~-----~---~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~d 72 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR--YKKTQAIEYY-----D---NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQD 72 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC--cCccceeEec-----c---cEEECChhheeCHHHHHHHHHHHhhCCEEEEEec
Confidence 7999999999999999999854332 2222222221 1 3469999 45566656666778999999999
Q ss_pred CCCCCC-HHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc-cccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 90 AADRDS-VPIARSELHELLMKPSLSGIPLLVLGNKIDKS-EALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 90 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
++++.+ ++.- + ...-..|+|-|+||+|+. +....+...+.+...... .+|++|+.+|+|+++|.+
T Consensus 73 at~~~~~~pP~---f------a~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~----~if~vS~~~~eGi~eL~~ 139 (143)
T PF10662_consen 73 ATEPRSVFPPG---F------ASMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK----EIFEVSAVTGEGIEELKD 139 (143)
T ss_pred CCCCCccCCch---h------hcccCCCEEEEEECccCccchhhHHHHHHHHHHcCCC----CeEEEECCCCcCHHHHHH
Confidence 998643 3221 1 111357999999999998 444555555555443332 369999999999999999
Q ss_pred HHH
Q 030429 168 WLI 170 (177)
Q Consensus 168 ~l~ 170 (177)
+|.
T Consensus 140 ~L~ 142 (143)
T PF10662_consen 140 YLE 142 (143)
T ss_pred HHh
Confidence 874
No 204
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.87 E-value=6.2e-21 Score=144.52 Aligned_cols=165 Identities=16% Similarity=0.163 Sum_probs=104.8
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCCC-----CCCCccceeEEE--------------E--E----e-C-----
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSE-----DMIPTVGFNMRK--------------V--T----K-G----- 55 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-----~~~~t~~~~~~~--------------~--~----~-~----- 55 (177)
...+..++|+++|+.++|||||+.+|.+.-... ....|....... + . . +
T Consensus 4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (411)
T PRK04000 4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL 83 (411)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence 345677999999999999999999996421111 111222221110 0 0 0 1
Q ss_pred CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHH
Q 030429 56 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQAL 135 (177)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~ 135 (177)
...+++|||||+.+|.......+..+|++++|+|++++.........+..+... ...|+++|+||+|+.+.....+.
T Consensus 84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~---~i~~iiVVlNK~Dl~~~~~~~~~ 160 (411)
T PRK04000 84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII---GIKNIVIVQNKIDLVSKERALEN 160 (411)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEEeeccccchhHHHH
Confidence 368999999999988776666677789999999998753212222222222111 22478999999999765332221
Q ss_pred HHHhCcc--cccCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 136 VDQLGLE--SITDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 136 ~~~~~~~--~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
.+.+... .......+++++||++|.|+++|++.|.+.+.
T Consensus 161 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 161 YEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 2221111 11123468999999999999999999998654
No 205
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.87 E-value=1.2e-20 Score=147.97 Aligned_cols=156 Identities=22% Similarity=0.307 Sum_probs=113.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc--CCCCC----------------CCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHH
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT--GGYSE----------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWE 75 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~--~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 75 (177)
+|+++|+.++|||||+++|+. +.+.. ....|+......+..+++.+++|||||+.+|...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 799999999999999999985 22211 112344444455778899999999999999998889
Q ss_pred HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC---HHHHHHHhCcccc--cCCcee
Q 030429 76 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS---KQALVDQLGLESI--TDREVC 150 (177)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~---~~~~~~~~~~~~~--~~~~~~ 150 (177)
.++..+|++++|+|+++. .......++...... ++|+++|+||+|+.+... .+++.+.+..... ....++
T Consensus 83 ~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~~----~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEG-PMPQTRFVLKKALEL----GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHHC----CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence 999999999999999764 345555666665443 689999999999865321 1222222221111 112468
Q ss_pred EEEeeecCCC----------ChHHHHHHHHHHhh
Q 030429 151 CYMISCKDSI----------NIDAVIDWLIKHSK 174 (177)
Q Consensus 151 ~~~~Sa~~~~----------~i~~l~~~l~~~~~ 174 (177)
++++||++|. |++.+|+.+.+.+.
T Consensus 158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred EEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 9999999995 79999999998764
No 206
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.87 E-value=8.7e-21 Score=152.38 Aligned_cols=152 Identities=23% Similarity=0.250 Sum_probs=104.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEeCCEEEEEEecCCchhhHHh----------HHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM----------WERYC 78 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~----------~~~~~ 78 (177)
+.++|+++|+||||||||+|++.+...... ...|.+.....+..++..+++||+||..++... ...++
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 357899999999999999999987654221 222333444446677889999999997655321 12232
Q ss_pred --cCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeee
Q 030429 79 --RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISC 156 (177)
Q Consensus 79 --~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (177)
..+|++++|+|+++.+. ...++..+.+ .++|+++|+||+|..+........+.+... .+.+++++|+
T Consensus 82 ~~~~aD~vI~VvDat~ler---~l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~~~----LG~pVvpiSA 150 (772)
T PRK09554 82 LSGDADLLINVVDASNLER---NLYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALSAR----LGCPVIPLVS 150 (772)
T ss_pred hccCCCEEEEEecCCcchh---hHHHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHHHH----hCCCEEEEEe
Confidence 47899999999987543 2334444433 368999999999987543322222222111 1247999999
Q ss_pred cCCCChHHHHHHHHHHh
Q 030429 157 KDSINIDAVIDWLIKHS 173 (177)
Q Consensus 157 ~~~~~i~~l~~~l~~~~ 173 (177)
++|+|++++++.+.+..
T Consensus 151 ~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 151 TRGRGIEALKLAIDRHQ 167 (772)
T ss_pred ecCCCHHHHHHHHHHhh
Confidence 99999999999998764
No 207
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.87 E-value=5.2e-21 Score=150.34 Aligned_cols=140 Identities=25% Similarity=0.277 Sum_probs=97.7
Q ss_pred cCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEEeCCEEEEEEecCCchhhHHh------HHHHh--cCCCEEEEEE
Q 030429 19 GLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQRRFRTM------WERYC--RGVSAILYVV 88 (177)
Q Consensus 19 G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~~d~~i~v~ 88 (177)
|.+|||||||+|++.+........+ |.+.....+..++..+++|||||+.++... .+.++ .++|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 8999999999999997765333333 333333445667888999999998766432 23333 4789999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH----HHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK----QALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
|+++.+ ....+..++.+ .++|+++|+||+|+.+.... +++.+.+ +.+++++||++|.|+++
T Consensus 81 Dat~le---r~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~l--------g~pvv~tSA~tg~Gi~e 145 (591)
T TIGR00437 81 DASNLE---RNLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLEERL--------GVPVVPTSATEGRGIER 145 (591)
T ss_pred cCCcch---hhHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHHHHc--------CCCEEEEECCCCCCHHH
Confidence 998743 22233333332 36899999999998654322 2222222 24799999999999999
Q ss_pred HHHHHHHHh
Q 030429 165 VIDWLIKHS 173 (177)
Q Consensus 165 l~~~l~~~~ 173 (177)
+++++.+.+
T Consensus 146 L~~~i~~~~ 154 (591)
T TIGR00437 146 LKDAIRKAI 154 (591)
T ss_pred HHHHHHHHh
Confidence 999998754
No 208
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.87 E-value=2.1e-20 Score=130.96 Aligned_cols=154 Identities=21% Similarity=0.263 Sum_probs=101.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCC----------------Cc-------ccee-----------------EEEEE
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMI----------------PT-------VGFN-----------------MRKVT 53 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~----------------~t-------~~~~-----------------~~~~~ 53 (177)
||+++|+.++|||||++++..+.+..... .+ .++. .....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58999999999999999999654432111 01 1111 01233
Q ss_pred eCCEEEEEEecCCchhhHHhHHHHhc--CCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC
Q 030429 54 KGNVTIKLWDLGGQRRFRTMWERYCR--GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS 131 (177)
Q Consensus 54 ~~~~~~~~~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~ 131 (177)
.++..+.++|+||+++|.......+. .+|++++|+|+..... ......+..+ .. .++|+++|+||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l-~~---~~ip~ivvvNK~D~~~~~~ 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLA-LA---LNIPVFVVVTKIDLAPANI 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCEEEEEECccccCHHH
Confidence 45678999999999998766555554 6899999999876532 2223333333 22 3689999999999876533
Q ss_pred HHHHH----HHhCccc---------------------ccCCceeEEEeeecCCCChHHHHHHHHHH
Q 030429 132 KQALV----DQLGLES---------------------ITDREVCCYMISCKDSINIDAVIDWLIKH 172 (177)
Q Consensus 132 ~~~~~----~~~~~~~---------------------~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 172 (177)
..+.. +.+.... ......++|.+|+.+|.|+++|.+.|...
T Consensus 156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~l 221 (224)
T cd04165 156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNLL 221 (224)
T ss_pred HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHhc
Confidence 33322 2332111 11234589999999999999999988653
No 209
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.87 E-value=3.8e-20 Score=121.67 Aligned_cols=157 Identities=25% Similarity=0.348 Sum_probs=122.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCC------------CCCCccceeEEEEEeCC-EEEEEEecCCchhhHHhHH
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSE------------DMIPTVGFNMRKVTKGN-VTIKLWDLGGQRRFRTMWE 75 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~------------~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~ 75 (177)
.-...||+++|+.++||||+++++....... ....|...++......+ ..+.+++||||++|..+|.
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~ 86 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWE 86 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHH
Confidence 3456899999999999999999998655211 11234455555555554 8899999999999999999
Q ss_pred HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEee
Q 030429 76 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMIS 155 (177)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 155 (177)
.+++++..+++++|.+.+..+ .....+ .+.... ..+|++++.||.|+.+....+++.+.+.... ...+.++++
T Consensus 87 ~l~~ga~gaivlVDss~~~~~-~a~~ii-~f~~~~--~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---~~~~vi~~~ 159 (187)
T COG2229 87 ILSRGAVGAIVLVDSSRPITF-HAEEII-DFLTSR--NPIPVVVAINKQDLFDALPPEKIREALKLEL---LSVPVIEID 159 (187)
T ss_pred HHhCCcceEEEEEecCCCcch-HHHHHH-HHHhhc--cCCCEEEEeeccccCCCCCHHHHHHHHHhcc---CCCceeeee
Confidence 999999999999999998777 333333 332331 1299999999999999888888888776543 345899999
Q ss_pred ecCCCChHHHHHHHHHH
Q 030429 156 CKDSINIDAVIDWLIKH 172 (177)
Q Consensus 156 a~~~~~i~~l~~~l~~~ 172 (177)
|.++++..+.++.+...
T Consensus 160 a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 160 ATEGEGARDQLDVLLLK 176 (187)
T ss_pred cccchhHHHHHHHHHhh
Confidence 99999999999888765
No 210
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.87 E-value=1.3e-20 Score=126.56 Aligned_cols=154 Identities=21% Similarity=0.256 Sum_probs=97.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeCCEEEEEEecCCchh----------hHHhHHHHhc--
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKGNVTIKLWDLGGQRR----------FRTMWERYCR-- 79 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~D~~g~~~----------~~~~~~~~~~-- 79 (177)
.|+++|.+|+|||||++.++++.+.....++.+.+.. ....+. .+.+|||||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND-KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR 79 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC-eEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence 4899999999999999999965554444444332222 122222 889999999432 3333344443
Q ss_pred -CCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccc-cCCceeEEEeeec
Q 030429 80 -GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI-TDREVCCYMISCK 157 (177)
Q Consensus 80 -~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~ 157 (177)
..+++++++|.+...+.... .+...+.. .+.|+++++||+|+.................. .....+++++|++
T Consensus 80 ~~~~~~~~v~d~~~~~~~~~~--~~~~~l~~---~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~ 154 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTEIDL--EMLDWLEE---LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSL 154 (170)
T ss_pred hhhhEEEEEEEcCcCCCHhHH--HHHHHHHH---cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecC
Confidence 35788999998765322221 11122222 25899999999999655433322222221111 2334578999999
Q ss_pred CCCChHHHHHHHHHHh
Q 030429 158 DSINIDAVIDWLIKHS 173 (177)
Q Consensus 158 ~~~~i~~l~~~l~~~~ 173 (177)
++.|+++++++|.+.+
T Consensus 155 ~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 155 KGQGIDELRALIEKWL 170 (170)
T ss_pred CCCCHHHHHHHHHHhC
Confidence 9999999999998753
No 211
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.87 E-value=1.7e-20 Score=146.63 Aligned_cols=156 Identities=19% Similarity=0.203 Sum_probs=103.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCC----CCccceeEEEEEe----------------CCEEEEEEecCCchhhH
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDM----IPTVGFNMRKVTK----------------GNVTIKLWDLGGQRRFR 71 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~----------------~~~~~~~~D~~g~~~~~ 71 (177)
..-|+++|++++|||||++++.+..+.... .++.+........ ....+.+|||||++.|.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 346999999999999999999977654332 2233322222111 11238899999999999
Q ss_pred HhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--------------HHHHH-
Q 030429 72 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--------------KQALV- 136 (177)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--------------~~~~~- 136 (177)
.++..++..+|++++|+|+++....... ..+. +... .+.|+++++||+|+.+... ..+..
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~-e~i~-~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~ 158 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQ-EALN-ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQ 158 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHH-HHHH-HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHH
Confidence 9888889999999999999874322221 1112 2222 3689999999999964210 00010
Q ss_pred ----------HHhCcccc----------cCCceeEEEeeecCCCChHHHHHHHHHH
Q 030429 137 ----------DQLGLESI----------TDREVCCYMISCKDSINIDAVIDWLIKH 172 (177)
Q Consensus 137 ----------~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 172 (177)
.++....+ .....+++++||++|+|+++|+++|...
T Consensus 159 ~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 159 NLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred HHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 01111111 1235789999999999999999998754
No 212
>PRK10218 GTP-binding protein; Provisional
Probab=99.86 E-value=2.6e-20 Score=146.11 Aligned_cols=159 Identities=21% Similarity=0.253 Sum_probs=111.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc--CCCCCC----------------CCCccceeEEEEEeCCEEEEEEecCCchhhHH
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT--GGYSED----------------MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT 72 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~--~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 72 (177)
+--||+++|+.++|||||+++|+. +.+... ...|.......+..+++.+++|||||+.+|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 446899999999999999999996 323221 11122233334567889999999999999999
Q ss_pred hHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC---HHHHHHHhCcccc--cCC
Q 030429 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS---KQALVDQLGLESI--TDR 147 (177)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~---~~~~~~~~~~~~~--~~~ 147 (177)
.+..+++.+|++++|+|+++... .....++..... .++|.++++||+|...... .+++.+.+..... ...
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~-~qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~ 158 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPM-PQTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQL 158 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCcc-HHHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcccccc
Confidence 99999999999999999977532 233444444433 3688999999999865322 2233333321111 123
Q ss_pred ceeEEEeeecCCC----------ChHHHHHHHHHHhh
Q 030429 148 EVCCYMISCKDSI----------NIDAVIDWLIKHSK 174 (177)
Q Consensus 148 ~~~~~~~Sa~~~~----------~i~~l~~~l~~~~~ 174 (177)
.++++++||.+|. |+..|++.|.+.+.
T Consensus 159 ~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 159 DFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred CCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 4689999999998 58899998887764
No 213
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.86 E-value=2.9e-20 Score=146.50 Aligned_cols=156 Identities=20% Similarity=0.236 Sum_probs=105.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC---CCCC--CCCccceeEEEEEe-CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGG---YSED--MIPTVGFNMRKVTK-GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~---~~~~--~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
-|+++|+.++|||||+++|.+.. +... ...|+...+..+.. ++..+.+||+||+++|...+...+.++|++++|
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV 81 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV 81 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence 58999999999999999998532 2222 23444444444432 456789999999999987777788999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCcccccCHHHHHHHhCccc--ccCCceeEEEeeecCCCChHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALSKQALVDQLGLES--ITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
+|+++... +.....+. ++.. .++| +++|+||+|+.+.+..+...+.+.... ......+++++||++|.|+++
T Consensus 82 Vda~eg~~-~qT~ehl~-il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 82 VACDDGVM-AQTREHLA-ILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred EECCCCCc-HHHHHHHH-HHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence 99976422 22222222 2222 2345 579999999976433333333332111 111345799999999999999
Q ss_pred HHHHHHHHhh
Q 030429 165 VIDWLIKHSK 174 (177)
Q Consensus 165 l~~~l~~~~~ 174 (177)
|++.|.+...
T Consensus 157 L~~~L~~~~~ 166 (614)
T PRK10512 157 LREHLLQLPE 166 (614)
T ss_pred HHHHHHHhhc
Confidence 9999987654
No 214
>PRK12736 elongation factor Tu; Reviewed
Probab=99.86 E-value=3.4e-20 Score=140.03 Aligned_cols=169 Identities=17% Similarity=0.116 Sum_probs=111.6
Q ss_pred CceeecccccceeEEEEEcCCCCCHHHHHHHHhcCCCC------------------CCCCCccceeEEEEEeCCEEEEEE
Q 030429 1 MYLHISLFFKQEMELSLIGLQNAGKTSLVNTIATGGYS------------------EDMIPTVGFNMRKVTKGNVTIKLW 62 (177)
Q Consensus 1 m~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~~ 62 (177)
|.+...-..+..++|+++|+.++|||||+++|++.... ....-|.......+..++..+.++
T Consensus 1 ~~~~~~~~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~i 80 (394)
T PRK12736 1 MAKEKFDRSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHV 80 (394)
T ss_pred CchhhhccCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEE
Confidence 44444455677899999999999999999999852110 012223333333444567889999
Q ss_pred ecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCcccccCHH-----HHH
Q 030429 63 DLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALSKQ-----ALV 136 (177)
Q Consensus 63 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~~-----~~~ 136 (177)
||||+.+|.......+..+|++++|+|+++... ......+..+.. .++| +++++||+|+.+.++.. ++.
T Consensus 81 DtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~~----~g~~~~IvviNK~D~~~~~~~~~~i~~~i~ 155 (394)
T PRK12736 81 DCPGHADYVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQ----VGVPYLVVFLNKVDLVDDEELLELVEMEVR 155 (394)
T ss_pred ECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHH----cCCCEEEEEEEecCCcchHHHHHHHHHHHH
Confidence 999999988777777888999999999976422 222333333322 2577 67889999997533221 222
Q ss_pred HHhCcccccCCceeEEEeeecCCC--------ChHHHHHHHHHHhh
Q 030429 137 DQLGLESITDREVCCYMISCKDSI--------NIDAVIDWLIKHSK 174 (177)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~Sa~~~~--------~i~~l~~~l~~~~~ 174 (177)
+.+....+.....+++++||.+|. +++++++.|.+.+.
T Consensus 156 ~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 156 ELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 222222222235689999999983 68889888887653
No 215
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.85 E-value=2.8e-20 Score=131.29 Aligned_cols=164 Identities=21% Similarity=0.237 Sum_probs=111.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCccceeEEEEEeCCEEEEEEecCCc------hhhHH------h
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSED---MIPTVGFNMRKVTKGNVTIKLWDLGGQ------RRFRT------M 73 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~------~~~~~------~ 73 (177)
..+.++|+++|.|++|||||.|.+.+...... ...|.......+..+..++.++||||. .+..- -
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 46779999999999999999999998775433 334555566667788999999999992 12211 1
Q ss_pred HHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC-----------------HHHHH
Q 030429 74 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-----------------KQALV 136 (177)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-----------------~~~~~ 136 (177)
....+..+|.+++|+|+++...... .+.+..+..+ .++|-++|+||+|...... ..++.
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y---s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~ 224 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY---SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ 224 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH---hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence 1234677999999999987432221 1222222222 4689999999999764321 12233
Q ss_pred HHhCccc---------ccCCceeEEEeeecCCCChHHHHHHHHHHhhhc
Q 030429 137 DQLGLES---------ITDREVCCYMISCKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 137 ~~~~~~~---------~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 176 (177)
+.....- .+..+-.+|.+||+.|+|++++.++|...+...
T Consensus 225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g 273 (379)
T KOG1423|consen 225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG 273 (379)
T ss_pred HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC
Confidence 3332111 122244689999999999999999999887643
No 216
>PRK12735 elongation factor Tu; Reviewed
Probab=99.85 E-value=4.1e-20 Score=139.70 Aligned_cols=168 Identities=18% Similarity=0.121 Sum_probs=111.3
Q ss_pred CceeecccccceeEEEEEcCCCCCHHHHHHHHhcC-------CC-----------CCCCCCccceeEEEEEeCCEEEEEE
Q 030429 1 MYLHISLFFKQEMELSLIGLQNAGKTSLVNTIATG-------GY-----------SEDMIPTVGFNMRKVTKGNVTIKLW 62 (177)
Q Consensus 1 m~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~-------~~-----------~~~~~~t~~~~~~~~~~~~~~~~~~ 62 (177)
|.+.+.-..+..++|+++|.+++|||||+++|++. .+ .....-|.......++.++.++.++
T Consensus 1 ~~~~~~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~i 80 (396)
T PRK12735 1 MAKEKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHV 80 (396)
T ss_pred CchhhcCCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEE
Confidence 55566667788899999999999999999999852 00 0011123333333355567789999
Q ss_pred ecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEE-EEeeCCCcccccCH-H----HHH
Q 030429 63 DLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLL-VLGNKIDKSEALSK-Q----ALV 136 (177)
Q Consensus 63 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-iv~nK~D~~~~~~~-~----~~~ 136 (177)
||||+.+|.......+..+|++++|+|+.+... ......+..+.. .++|.+ +++||+|+.+.++. + ++.
T Consensus 81 DtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~----~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~ 155 (396)
T PRK12735 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVR 155 (396)
T ss_pred ECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHH----cCCCeEEEEEEecCCcchHHHHHHHHHHHH
Confidence 999999887777777889999999999976432 222233333322 357755 57999999753222 1 222
Q ss_pred HHhCcccccCCceeEEEeeecCCC----------ChHHHHHHHHHHh
Q 030429 137 DQLGLESITDREVCCYMISCKDSI----------NIDAVIDWLIKHS 173 (177)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~Sa~~~~----------~i~~l~~~l~~~~ 173 (177)
+.+....+.....+++++||.+|. ++.+|++.|.+.+
T Consensus 156 ~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 156 ELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred HHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 222221122234789999999984 6788988888764
No 217
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.85 E-value=1.1e-19 Score=122.05 Aligned_cols=160 Identities=23% Similarity=0.325 Sum_probs=107.3
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCC----CCCCCCccceeEEEEEeCCEEEEEEecCC----------chhhHH
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGY----SEDMIPTVGFNMRKVTKGNVTIKLWDLGG----------QRRFRT 72 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~ 72 (177)
+.......|+++|.+++|||||+|++++..- ...++.|..+++..+... +.++|.|| .+....
T Consensus 19 ~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~ 95 (200)
T COG0218 19 YPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKK 95 (200)
T ss_pred CCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHH
Confidence 3445667999999999999999999998552 233334544555554432 78889999 222333
Q ss_pred hHHHHhcC---CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHH----HHHHHhCccccc
Q 030429 73 MWERYCRG---VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ----ALVDQLGLESIT 145 (177)
Q Consensus 73 ~~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~----~~~~~~~~~~~~ 145 (177)
+...|++. ..++++++|+..+ .........+++.. .++|+++++||+|+....+.. ...+.+......
T Consensus 96 ~i~~YL~~R~~L~~vvlliD~r~~--~~~~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~ 170 (200)
T COG0218 96 LIEEYLEKRANLKGVVLLIDARHP--PKDLDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPD 170 (200)
T ss_pred HHHHHHhhchhheEEEEEEECCCC--CcHHHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCc
Confidence 34445543 5789999998443 44444444555444 589999999999998865543 333334332222
Q ss_pred CCceeEEEeeecCCCChHHHHHHHHHHhhhc
Q 030429 146 DREVCCYMISCKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 146 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 176 (177)
... ++..|+..+.|++++.+.|.+.+...
T Consensus 171 ~~~--~~~~ss~~k~Gi~~l~~~i~~~~~~~ 199 (200)
T COG0218 171 DQW--VVLFSSLKKKGIDELKAKILEWLKEA 199 (200)
T ss_pred cce--EEEEecccccCHHHHHHHHHHHhhcc
Confidence 221 77889999999999999999887654
No 218
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.85 E-value=2.6e-19 Score=128.50 Aligned_cols=112 Identities=25% Similarity=0.297 Sum_probs=80.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC--CCC---------------C-------CCCccceeEEEEEeCCEEEEEEecCCch
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGG--YSE---------------D-------MIPTVGFNMRKVTKGNVTIKLWDLGGQR 68 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~--~~~---------------~-------~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 68 (177)
-+|+++|++|+|||||+++++... ..+ + ...+.......++.++..+++|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 479999999999999999997321 000 0 1112223444577889999999999999
Q ss_pred hhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030429 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 129 (177)
+|.......++.+|++++|+|+++.... ....++... .. .++|+++++||+|+...
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~-~~---~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVC-RL---RGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHH-Hh---cCCCEEEEEECCccCCC
Confidence 9888777788999999999999875432 223333322 22 46899999999998653
No 219
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.84 E-value=3.7e-20 Score=127.76 Aligned_cols=158 Identities=14% Similarity=0.212 Sum_probs=96.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccce---e--EEEEE-eCCEEEEEEecCCchhhHHhHH-----HHhcC
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGF---N--MRKVT-KGNVTIKLWDLGGQRRFRTMWE-----RYCRG 80 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~---~--~~~~~-~~~~~~~~~D~~g~~~~~~~~~-----~~~~~ 80 (177)
+++|+++|.+|+|||||+|++.+.........+.+. + ...+. .....+.+||+||......... ..+.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 478999999999999999999975443222222121 0 01111 1124689999999653322122 22567
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC---------HHHHHHHhCcccc------c
Q 030429 81 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS---------KQALVDQLGLESI------T 145 (177)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~---------~~~~~~~~~~~~~------~ 145 (177)
+|+++++.+. .+......+...+.. .+.|+++|+||+|+..... .++..+.+..... .
T Consensus 81 ~d~~l~v~~~----~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 81 YDFFIIISST----RFSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred cCEEEEEeCC----CCCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 8998887442 344444444444443 2579999999999853211 2222222221111 1
Q ss_pred CCceeEEEeeec--CCCChHHHHHHHHHHhhhc
Q 030429 146 DREVCCYMISCK--DSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 146 ~~~~~~~~~Sa~--~~~~i~~l~~~l~~~~~~~ 176 (177)
....++|.+|+. .+.++..+.+.+...+.++
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 223478899998 5799999999999988754
No 220
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.84 E-value=1.2e-19 Score=137.16 Aligned_cols=167 Identities=18% Similarity=0.127 Sum_probs=106.0
Q ss_pred CceeecccccceeEEEEEcCCCCCHHHHHHHHhcC------C-C-----------CCCCCCccceeEEEEEeCCEEEEEE
Q 030429 1 MYLHISLFFKQEMELSLIGLQNAGKTSLVNTIATG------G-Y-----------SEDMIPTVGFNMRKVTKGNVTIKLW 62 (177)
Q Consensus 1 m~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~------~-~-----------~~~~~~t~~~~~~~~~~~~~~~~~~ 62 (177)
|....--..++.++|+++|..++|||||+++|++. . . ......|.......+..++..+.+|
T Consensus 1 ~~~~~~~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~li 80 (394)
T TIGR00485 1 MAKEKFERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHV 80 (394)
T ss_pred CchhhhcCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEE
Confidence 34334445677899999999999999999999732 0 0 0112234444444455667889999
Q ss_pred ecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEE-EEeeCCCcccccCH-H----HHH
Q 030429 63 DLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLL-VLGNKIDKSEALSK-Q----ALV 136 (177)
Q Consensus 63 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-iv~nK~D~~~~~~~-~----~~~ 136 (177)
||||+++|.......+..+|++++|+|+++... ......+..+.. .++|.+ +++||+|+.+.++. + ++.
T Consensus 81 DtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~-~qt~e~l~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~ 155 (394)
T TIGR00485 81 DCPGHADYVKNMITGAAQMDGAILVVSATDGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVR 155 (394)
T ss_pred ECCchHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEEecccCCHHHHHHHHHHHHH
Confidence 999999998766667788999999999976422 222233333322 256655 68999999754321 1 222
Q ss_pred HHhCcccccCCceeEEEeeecCCC--------ChHHHHHHHHHH
Q 030429 137 DQLGLESITDREVCCYMISCKDSI--------NIDAVIDWLIKH 172 (177)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~Sa~~~~--------~i~~l~~~l~~~ 172 (177)
+.+....+....++++++||.+|. ++.++++.|.+.
T Consensus 156 ~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~ 199 (394)
T TIGR00485 156 ELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEY 199 (394)
T ss_pred HHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhc
Confidence 233222222234789999999874 345566655543
No 221
>CHL00071 tufA elongation factor Tu
Probab=99.84 E-value=1.2e-19 Score=137.70 Aligned_cols=168 Identities=17% Similarity=0.121 Sum_probs=109.6
Q ss_pred CceeecccccceeEEEEEcCCCCCHHHHHHHHhcCCCC------------------CCCCCccceeEEEEEeCCEEEEEE
Q 030429 1 MYLHISLFFKQEMELSLIGLQNAGKTSLVNTIATGGYS------------------EDMIPTVGFNMRKVTKGNVTIKLW 62 (177)
Q Consensus 1 m~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~~ 62 (177)
|.++..-..+..++|+++|.+++|||||+++|++.... .....|.......+..++.++.++
T Consensus 1 ~~~~~~~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~i 80 (409)
T CHL00071 1 MAREKFERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHV 80 (409)
T ss_pred CchhhccCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEE
Confidence 44444455677899999999999999999999853110 001112223333355567889999
Q ss_pred ecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCcccccCH-H----HHH
Q 030429 63 DLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALSK-Q----ALV 136 (177)
Q Consensus 63 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~-~----~~~ 136 (177)
||||+.+|.......+..+|++++|+|+..... ......+..+ .. .++| +++++||+|+.+..+. + ++.
T Consensus 81 DtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~-~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~ 155 (409)
T CHL00071 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLA-KQ---VGVPNIVVFLNKEDQVDDEELLELVELEVR 155 (409)
T ss_pred ECCChHHHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHH
Confidence 999999888777777889999999999975422 2223333333 22 2577 7788999999764322 2 223
Q ss_pred HHhCcccccCCceeEEEeeecCCCC------------------hHHHHHHHHHHh
Q 030429 137 DQLGLESITDREVCCYMISCKDSIN------------------IDAVIDWLIKHS 173 (177)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~Sa~~~~~------------------i~~l~~~l~~~~ 173 (177)
+.+....+.....+++++||.+|.+ +..+++.|...+
T Consensus 156 ~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~ 210 (409)
T CHL00071 156 ELLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYI 210 (409)
T ss_pred HHHHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhC
Confidence 3332222222347899999998863 466777766543
No 222
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.84 E-value=3.5e-19 Score=139.80 Aligned_cols=158 Identities=19% Similarity=0.224 Sum_probs=101.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC----CccceeEEEEEe------CC-----E-----EEEEEecCCchh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMI----PTVGFNMRKVTK------GN-----V-----TIKLWDLGGQRR 69 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~----~t~~~~~~~~~~------~~-----~-----~~~~~D~~g~~~ 69 (177)
.++..|+++|++++|||||++++.+........ ++.+........ .. . .+.+|||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 355679999999999999999997554322221 223322221110 00 1 268999999999
Q ss_pred hHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH--------------H--
Q 030429 70 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK--------------Q-- 133 (177)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~--------------~-- 133 (177)
|...+...+..+|++++|+|+++..... ....+..+ .. .++|+++++||+|+...... .
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~q-t~e~i~~~-~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v 158 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQ-TIEAINIL-KR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRV 158 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHh-HHHHHHHH-HH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHH
Confidence 9988888888999999999998732111 11112222 22 36899999999998532110 0
Q ss_pred ---------HHHHHhCcccc----------cCCceeEEEeeecCCCChHHHHHHHHHH
Q 030429 134 ---------ALVDQLGLESI----------TDREVCCYMISCKDSINIDAVIDWLIKH 172 (177)
Q Consensus 134 ---------~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 172 (177)
++...+....+ .....+++++||.+|.|++++++.+...
T Consensus 159 ~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~ 216 (586)
T PRK04004 159 QQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL 216 (586)
T ss_pred HHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence 01112221111 1235789999999999999999988653
No 223
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=3.7e-20 Score=119.41 Aligned_cols=164 Identities=33% Similarity=0.533 Sum_probs=136.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
.++.-|++++|--++|||||++-+.+++ -....||...+..+...++..|+-+|.+|+...+..|..++..+|++++.+
T Consensus 17 ~kK~gKllFlGLDNAGKTTLLHMLKdDr-l~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lv 95 (193)
T KOG0077|consen 17 YKKFGKLLFLGLDNAGKTTLLHMLKDDR-LGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLV 95 (193)
T ss_pred hccCceEEEEeecCCchhhHHHHHcccc-ccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeee
Confidence 3566799999999999999999997444 445667888888888999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcc------------cccCCceeEEEeee
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLE------------SITDREVCCYMISC 156 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~Sa 156 (177)
|+-|.+.+.+.+..+..++........|+++.+||+|.+.....++....++.. ....+...+|.||.
T Consensus 96 da~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi 175 (193)
T KOG0077|consen 96 DAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSI 175 (193)
T ss_pred ehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEE
Confidence 999999999999999988887766789999999999998876555554444321 12235677889999
Q ss_pred cCCCChHHHHHHHHHHh
Q 030429 157 KDSINIDAVIDWLIKHS 173 (177)
Q Consensus 157 ~~~~~i~~l~~~l~~~~ 173 (177)
..+.+-.+.|.|+.+++
T Consensus 176 ~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 176 VRKMGYGEGFKWLSQYI 192 (193)
T ss_pred EccCccceeeeehhhhc
Confidence 99999888888887654
No 224
>PRK00049 elongation factor Tu; Reviewed
Probab=99.83 E-value=3.6e-19 Score=134.50 Aligned_cols=168 Identities=17% Similarity=0.109 Sum_probs=111.7
Q ss_pred CceeecccccceeEEEEEcCCCCCHHHHHHHHhcCCCC------------------CCCCCccceeEEEEEeCCEEEEEE
Q 030429 1 MYLHISLFFKQEMELSLIGLQNAGKTSLVNTIATGGYS------------------EDMIPTVGFNMRKVTKGNVTIKLW 62 (177)
Q Consensus 1 m~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~~ 62 (177)
|.+......+..++|+++|..++|||||+++|++.... .....|.......+..++.++.++
T Consensus 1 ~~~~~~~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~i 80 (396)
T PRK00049 1 MAKEKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHV 80 (396)
T ss_pred CchhhccCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEE
Confidence 44455555678899999999999999999999852110 012223333333455567889999
Q ss_pred ecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEE-EEeeCCCcccccC-HH----HHH
Q 030429 63 DLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLL-VLGNKIDKSEALS-KQ----ALV 136 (177)
Q Consensus 63 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-iv~nK~D~~~~~~-~~----~~~ 136 (177)
||||+.+|.......+..+|++++|+|+..... ......+..+ .. .++|.+ +++||+|+.+..+ .+ ++.
T Consensus 81 DtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~-~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~ 155 (396)
T PRK00049 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLA-RQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVR 155 (396)
T ss_pred ECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHH-HH---cCCCEEEEEEeecCCcchHHHHHHHHHHHH
Confidence 999999888777777899999999999976422 2223333333 22 257876 5799999975322 11 222
Q ss_pred HHhCcccccCCceeEEEeeecCCC----------ChHHHHHHHHHHh
Q 030429 137 DQLGLESITDREVCCYMISCKDSI----------NIDAVIDWLIKHS 173 (177)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~Sa~~~~----------~i~~l~~~l~~~~ 173 (177)
+.+....+.....+++++||.++. ++..+++.|.+.+
T Consensus 156 ~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 156 ELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred HHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 333222222345789999999875 5778888888754
No 225
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.83 E-value=2e-19 Score=125.66 Aligned_cols=155 Identities=15% Similarity=0.196 Sum_probs=98.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC---------------------CCCccceeEEEEE-----eCCEEEEEEecCCc
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSED---------------------MIPTVGFNMRKVT-----KGNVTIKLWDLGGQ 67 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~---------------------~~~t~~~~~~~~~-----~~~~~~~~~D~~g~ 67 (177)
+|+++|+.|+|||||+++|+....... ...+.......+. ...+.+++|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999985432211 0011111111121 23488999999999
Q ss_pred hhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-------ccCH---HHHHH
Q 030429 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE-------ALSK---QALVD 137 (177)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~-------~~~~---~~~~~ 137 (177)
.+|......++..+|++++|+|+++..+... ..++..... .+.|+++|+||+|+.. .+.. .+..+
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~ 156 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRLILELKLPPNDAYFKLRHIID 156 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccCcccccCCHHHHHHHHHHHHH
Confidence 9998888888999999999999987765533 333333322 2589999999999752 1111 11222
Q ss_pred HhCc----ccc------cCCceeEEEeeecCCCChH--------HHHHHHHHHh
Q 030429 138 QLGL----ESI------TDREVCCYMISCKDSINID--------AVIDWLIKHS 173 (177)
Q Consensus 138 ~~~~----~~~------~~~~~~~~~~Sa~~~~~i~--------~l~~~l~~~~ 173 (177)
.+.. ... .-.+..+++.|++.+.++. +|++.|.+.+
T Consensus 157 ~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~ 210 (213)
T cd04167 157 EVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNI 210 (213)
T ss_pred HHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhC
Confidence 2211 101 0012347789999988776 6777666544
No 226
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.82 E-value=2.2e-18 Score=124.32 Aligned_cols=111 Identities=23% Similarity=0.241 Sum_probs=80.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC--C------------------CCCCccceeEEEEEeCCEEEEEEecCCchhhHHh
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYS--E------------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM 73 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~--~------------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 73 (177)
+|+++|.+|+|||||+++++..... + ....+.......+..+++.+++|||||+.++...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 5899999999999999999742110 0 0112333344456678899999999999988888
Q ss_pred HHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030429 74 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 129 (177)
+..++..+|++++|+|+++....... ..+..+.. .++|.++++||+|....
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~~~~~~----~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTE-KLWEFADE----AGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCCEEEEEECCccCCC
Confidence 88889999999999999876544332 22222222 36899999999998653
No 227
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.82 E-value=1.1e-18 Score=125.41 Aligned_cols=111 Identities=20% Similarity=0.182 Sum_probs=81.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC--C------------------CCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHh
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGG--Y------------------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM 73 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~--~------------------~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 73 (177)
+|+++|++|+|||||+++++... . ......|.......+..++.++.+|||||+.++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 58999999999999999997311 0 011222444445556778999999999999999888
Q ss_pred HHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030429 74 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 129 (177)
+..+++.+|++++|+|+.+...-. ....+..... .++|+++++||+|+.+.
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~----~~~p~ivviNK~D~~~a 131 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADR----YNVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHH----cCCCEEEEEECCCCCCC
Confidence 888999999999999997754322 2233333322 36899999999998753
No 228
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.82 E-value=2.7e-19 Score=126.95 Aligned_cols=161 Identities=24% Similarity=0.306 Sum_probs=115.1
Q ss_pred ecccccceeEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEeCC-EEEEEEecCCchhhHHhH-------
Q 030429 5 ISLFFKQEMELSLIGLQNAGKTSLVNTIATGGYS--EDMIPTVGFNMRKVTKGN-VTIKLWDLGGQRRFRTMW------- 74 (177)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~------- 74 (177)
+.++.+.-..|.++|.|++|||||++++...... .....|.......+.+++ .++.+-|+||.-+...+.
T Consensus 189 ~~lELKsiadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~F 268 (366)
T KOG1489|consen 189 IELELKSIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKF 268 (366)
T ss_pred EEEEeeeecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHH
Confidence 4456667788999999999999999999865532 223334445555555554 349999999954332222
Q ss_pred HHHhcCCCEEEEEEeCCCC---CCHHHHHHHHHHHHcC-CCCCCCcEEEEeeCCCcccccCH--HHHHHHhCcccccCCc
Q 030429 75 ERYCRGVSAILYVVDAADR---DSVPIARSELHELLMK-PSLSGIPLLVLGNKIDKSEALSK--QALVDQLGLESITDRE 148 (177)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~ 148 (177)
-.+++.|+.+++|+|++.+ ..++.+...+.++-.+ ....+.|.++|+||+|+.+.+.. .++.+.++..
T Consensus 269 LrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~------ 342 (366)
T KOG1489|consen 269 LRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNP------ 342 (366)
T ss_pred HHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCCC------
Confidence 2346779999999999998 7788877777776554 23356899999999999654322 3444444332
Q ss_pred eeEEEeeecCCCChHHHHHHHHHH
Q 030429 149 VCCYMISCKDSINIDAVIDWLIKH 172 (177)
Q Consensus 149 ~~~~~~Sa~~~~~i~~l~~~l~~~ 172 (177)
.++++||+.++|+.++++.|.+.
T Consensus 343 -~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 343 -HVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred -cEEEeeeccccchHHHHHHHhhc
Confidence 48999999999999999987653
No 229
>PLN03126 Elongation factor Tu; Provisional
Probab=99.82 E-value=1.5e-18 Score=133.21 Aligned_cols=147 Identities=16% Similarity=0.147 Sum_probs=98.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCC------C------------CCCCCCccceeEEEEEeCCEEEEEEecCCchhh
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGG------Y------------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF 70 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~------~------------~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 70 (177)
.+..++|+++|++++|||||+++|+... . .....-|.......+..++..+.++|+||+.+|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 3567999999999999999999998421 1 111112333333345567889999999999999
Q ss_pred HHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCcccccCH-H----HHHHHhCcccc
Q 030429 71 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALSK-Q----ALVDQLGLESI 144 (177)
Q Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~-~----~~~~~~~~~~~ 144 (177)
.......+..+|++++|+|+.+... .....++...... ++| +++++||+|+.+.++. + ++.+.+....+
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~~----gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQV----GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF 232 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc----CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 8877777889999999999976532 2223344333222 567 7788999999764321 2 22233322223
Q ss_pred cCCceeEEEeeecCCC
Q 030429 145 TDREVCCYMISCKDSI 160 (177)
Q Consensus 145 ~~~~~~~~~~Sa~~~~ 160 (177)
.....+++++|+.++.
T Consensus 233 ~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 233 PGDDIPIISGSALLAL 248 (478)
T ss_pred CcCcceEEEEEccccc
Confidence 3346789999998874
No 230
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.82 E-value=5.2e-19 Score=135.14 Aligned_cols=152 Identities=17% Similarity=0.159 Sum_probs=102.9
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcC--CCC-------------------------------CCCCCccceeEEEEEeC
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATG--GYS-------------------------------EDMIPTVGFNMRKVTKG 55 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~--~~~-------------------------------~~~~~t~~~~~~~~~~~ 55 (177)
.+..++|+++|+.++|||||+.+|+.. ... .....|.......+..+
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 356789999999999999999999741 111 11122444445556678
Q ss_pred CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCC---H---HHHHHHHHHHHcCCCCCCCc-EEEEeeCCCccc
Q 030429 56 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDS---V---PIARSELHELLMKPSLSGIP-LLVLGNKIDKSE 128 (177)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~ 128 (177)
+..++++|+||+.+|.......+..+|++++|+|++.... + ......+..... .++| +++++||+|...
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~----~gi~~iiv~vNKmD~~~ 159 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT----LGVKQMIVCINKMDDKT 159 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH----cCCCeEEEEEEcccccc
Confidence 8999999999999998888888899999999999976431 1 222333333322 2555 678999999532
Q ss_pred ----ccCHH----HHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 129 ----ALSKQ----ALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 129 ----~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
....+ ++.+.+....+....++++++|+.+|.|+.+
T Consensus 160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 12222 3333333333333457999999999999864
No 231
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.81 E-value=6e-19 Score=135.71 Aligned_cols=153 Identities=13% Similarity=0.090 Sum_probs=98.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCC--CC---------------------------------CCCCccceeEEEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGY--SE---------------------------------DMIPTVGFNMRKVT 53 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~---------------------------------~~~~t~~~~~~~~~ 53 (177)
.+..++|+++|++++|||||+++|+...- .. ...-|+......+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 46779999999999999999999983211 10 01112334444455
Q ss_pred eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--
Q 030429 54 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-- 131 (177)
Q Consensus 54 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-- 131 (177)
.++.++.+|||||+.+|.......+..+|++++|+|++..-.-.. ...+... ... ...|+++++||+|+.+...
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt-~~~~~l~-~~l--g~~~iIvvvNKiD~~~~~~~~ 179 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQT-RRHSFIA-TLL--GIKHLVVAVNKMDLVDYSEEV 179 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccc-hHHHHHH-HHh--CCCceEEEEEeeccccchhHH
Confidence 677899999999999887666666899999999999976422111 1111111 111 1247899999999974321
Q ss_pred HHHHHHHhCcc--ccc-CCceeEEEeeecCCCChHHH
Q 030429 132 KQALVDQLGLE--SIT-DREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 132 ~~~~~~~~~~~--~~~-~~~~~~~~~Sa~~~~~i~~l 165 (177)
..+..+.+... ... ....+++++||++|.|++++
T Consensus 180 ~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 180 FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 22233322110 011 23568999999999999764
No 232
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.81 E-value=1.4e-18 Score=132.78 Aligned_cols=150 Identities=14% Similarity=0.145 Sum_probs=102.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCC--C-------------------------------CCCCCCccceeEEEEEeCC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGG--Y-------------------------------SEDMIPTVGFNMRKVTKGN 56 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~--~-------------------------------~~~~~~t~~~~~~~~~~~~ 56 (177)
+..++|+++|+.++|||||+.+|+... . .+...-|+......++.++
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 567999999999999999999997311 0 0111224444455566778
Q ss_pred EEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCH-------HHHHHHHHHHHcCCCCCCC-cEEEEeeCCCccc
Q 030429 57 VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSV-------PIARSELHELLMKPSLSGI-PLLVLGNKIDKSE 128 (177)
Q Consensus 57 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~-~~iiv~nK~D~~~ 128 (177)
..++++|+||+.+|.......+..+|++++|+|+++. .+ ......+..... .++ ++++++||+|+.+
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~----~gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT----LGVKQMICCCNKMDATT 159 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH----cCCCcEEEEEEcccCCc
Confidence 8999999999999999888889999999999999763 22 233333332222 255 5788899999862
Q ss_pred c----cCH----HHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 129 A----LSK----QALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 129 ~----~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
. ... +++.+.+....+....++++++||.+|.|+.+
T Consensus 160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 1 112 23333333223333457899999999999853
No 233
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.81 E-value=3.7e-18 Score=132.54 Aligned_cols=116 Identities=23% Similarity=0.279 Sum_probs=83.4
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhc--CCC------C---------CC-------CCCccceeEEEEEeCCEEEEEEe
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIAT--GGY------S---------ED-------MIPTVGFNMRKVTKGNVTIKLWD 63 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~--~~~------~---------~~-------~~~t~~~~~~~~~~~~~~~~~~D 63 (177)
+..+..+|+++|++++|||||+++|+. +.. . .+ ...+.......+..+++.+++||
T Consensus 6 ~~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliD 85 (526)
T PRK00741 6 EVAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLD 85 (526)
T ss_pred hhhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEE
Confidence 445667999999999999999999972 110 0 00 01122233345677889999999
Q ss_pred cCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 64 LGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
|||+.+|......++..+|++++|+|+++.... ....++... . ..++|+++++||+|+..
T Consensus 86 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~-~---~~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 86 TPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVC-R---LRDTPIFTFINKLDRDG 145 (526)
T ss_pred CCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHH-H---hcCCCEEEEEECCcccc
Confidence 999999988778889999999999999875322 223333332 2 24789999999999865
No 234
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.81 E-value=4.8e-18 Score=121.35 Aligned_cols=157 Identities=20% Similarity=0.209 Sum_probs=114.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEeCCEEEEEEecCCch--hhHH----hHH---HHh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYS--EDMIPTVGFNMRKVTKGNVTIKLWDLGGQR--RFRT----MWE---RYC 78 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~--~~~~----~~~---~~~ 78 (177)
+....|++.|.||||||||++.+.+.... +....|.++....+..+..+++++||||.. .... ..+ +.-
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~ 245 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALR 245 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHH
Confidence 45678999999999999999999977654 444458889999999999999999999932 1111 111 122
Q ss_pred cCCCEEEEEEeCCCCC--CHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeee
Q 030429 79 RGVSAILYVVDAADRD--SVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISC 156 (177)
Q Consensus 79 ~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (177)
+-.+++++++|.|..+ +.+.....+.++.... ..|+++|.||+|..+.+..++....+...... ....+++
T Consensus 246 hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f---~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~----~~~~~~~ 318 (346)
T COG1084 246 HLAGVILFLFDPSETCGYSLEEQISLLEEIKELF---KAPIVVVINKIDIADEEKLEEIEASVLEEGGE----EPLKISA 318 (346)
T ss_pred HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc---CCCeEEEEecccccchhHHHHHHHHHHhhccc----cccceee
Confidence 3368999999998654 5667777788876653 38999999999998776665555544332221 2567888
Q ss_pred cCCCChHHHHHHHHHHh
Q 030429 157 KDSINIDAVIDWLIKHS 173 (177)
Q Consensus 157 ~~~~~i~~l~~~l~~~~ 173 (177)
..+.+++.+-+.+...+
T Consensus 319 ~~~~~~d~~~~~v~~~a 335 (346)
T COG1084 319 TKGCGLDKLREEVRKTA 335 (346)
T ss_pred eehhhHHHHHHHHHHHh
Confidence 88888888887776653
No 235
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.81 E-value=1.2e-18 Score=132.18 Aligned_cols=148 Identities=14% Similarity=0.091 Sum_probs=95.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC--CCC---------------------------------CCCCccceeEEEEEeCCE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGG--YSE---------------------------------DMIPTVGFNMRKVTKGNV 57 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~--~~~---------------------------------~~~~t~~~~~~~~~~~~~ 57 (177)
++|+++|+.++|||||+++|+... ... ...-|.......+..++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 589999999999999999997321 100 011133444444566788
Q ss_pred EEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHH
Q 030429 58 TIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQAL 135 (177)
Q Consensus 58 ~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~ 135 (177)
++.++||||+.+|.......+..+|++++|+|++....-.. ...+... ... ...++++++||+|+.+... .++.
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt-~~~~~~~-~~~--~~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQT-RRHSYIA-SLL--GIRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcccc-HHHHHHH-HHc--CCCcEEEEEEecccccchHHHHHHH
Confidence 99999999999997767777889999999999976532211 1122222 221 1346889999999975321 1222
Q ss_pred HHHhCc--ccccCCceeEEEeeecCCCChHH
Q 030429 136 VDQLGL--ESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 136 ~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
.+.+.. ........+++++||++|.|+++
T Consensus 157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 222211 01112345799999999999986
No 236
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.80 E-value=4.1e-18 Score=131.95 Aligned_cols=148 Identities=22% Similarity=0.247 Sum_probs=110.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEeCCEEEEEEecCCchh------hHHhHHHHh--cCC
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGNVTIKLWDLGGQRR------FRTMWERYC--RGV 81 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~------~~~~~~~~~--~~~ 81 (177)
..+|+++|+||||||||.|++++.+.... .+-|.+-....+..++.++++.|+||.-. -....+.++ .+.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~ 82 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKP 82 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCC
Confidence 45799999999999999999997664433 33355556666778888999999999321 122233333 357
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc----CHHHHHHHhCcccccCCceeEEEeeec
Q 030429 82 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL----SKQALVDQLGLESITDREVCCYMISCK 157 (177)
Q Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (177)
|+++-|+|+++ .+.......++.+. +.|++++.|++|..+.. +.+++.+.++- |++++||+
T Consensus 83 D~ivnVvDAtn---LeRnLyltlQLlE~----g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGv--------PVv~tvA~ 147 (653)
T COG0370 83 DLIVNVVDATN---LERNLYLTLQLLEL----GIPMILALNMIDEAKKRGIRIDIEKLSKLLGV--------PVVPTVAK 147 (653)
T ss_pred CEEEEEcccch---HHHHHHHHHHHHHc----CCCeEEEeccHhhHHhcCCcccHHHHHHHhCC--------CEEEEEee
Confidence 99999999988 44444455555554 78999999999987643 34566666664 89999999
Q ss_pred CCCChHHHHHHHHHHhh
Q 030429 158 DSINIDAVIDWLIKHSK 174 (177)
Q Consensus 158 ~~~~i~~l~~~l~~~~~ 174 (177)
+|.|++++++.+.+...
T Consensus 148 ~g~G~~~l~~~i~~~~~ 164 (653)
T COG0370 148 RGEGLEELKRAIIELAE 164 (653)
T ss_pred cCCCHHHHHHHHHHhcc
Confidence 99999999999987544
No 237
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=1.6e-19 Score=118.98 Aligned_cols=158 Identities=22% Similarity=0.374 Sum_probs=131.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEE----eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
..++++++|..|.||||+.++.+.+.+...+.+|.+....... .+.++|..|||.|++.+-.....++-+..++++
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 3689999999999999999999999999999999997776643 234899999999999998877788888999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
++|++.+-.+.+...|..++..... ++|+++++||.|........+.. .....++..++++|++.+.|.+.-|
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~~--NiPiv~cGNKvDi~~r~~k~k~v-----~~~rkknl~y~~iSaksn~NfekPF 161 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVRE--NIPIVLCGNKVDIKARKVKAKPV-----SFHRKKNLQYYEISAKSNYNFERPF 161 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHhc--CCCeeeeccceeccccccccccc-----eeeecccceeEEeecccccccccch
Confidence 9999999999999999999877654 69999999999987654221111 2222345679999999999999999
Q ss_pred HHHHHHhhh
Q 030429 167 DWLIKHSKT 175 (177)
Q Consensus 167 ~~l~~~~~~ 175 (177)
-++.+.+..
T Consensus 162 l~LarKl~G 170 (216)
T KOG0096|consen 162 LWLARKLTG 170 (216)
T ss_pred HHHhhhhcC
Confidence 999988753
No 238
>COG2262 HflX GTPases [General function prediction only]
Probab=99.80 E-value=7.8e-18 Score=123.57 Aligned_cols=155 Identities=24% Similarity=0.313 Sum_probs=112.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCccceeEEEEEeC-CEEEEEEecCC---------chhhHHhHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGY--SEDMIPTVGFNMRKVTKG-NVTIKLWDLGG---------QRRFRTMWERYC 78 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g---------~~~~~~~~~~~~ 78 (177)
.-..|.++|-+++|||||+|++++... ......|...++..+... +..+.+-||.| .+.|++...+ .
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE-~ 269 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEE-V 269 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHH-h
Confidence 446899999999999999999996554 334456777778877765 57788889999 2345554444 5
Q ss_pred cCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecC
Q 030429 79 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKD 158 (177)
Q Consensus 79 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (177)
..+|+++.|+|+++|.....+......+ .......+|+++|+||+|+..+... ...+.... . ..+++||++
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~~~v~~vL-~el~~~~~p~i~v~NKiD~~~~~~~---~~~~~~~~----~-~~v~iSA~~ 340 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKLEAVEDVL-AEIGADEIPIILVLNKIDLLEDEEI---LAELERGS----P-NPVFISAKT 340 (411)
T ss_pred hcCCEEEEEeecCChhHHHHHHHHHHHH-HHcCCCCCCEEEEEecccccCchhh---hhhhhhcC----C-CeEEEEecc
Confidence 6799999999999996555554444433 4444456999999999998776441 11111111 1 488999999
Q ss_pred CCChHHHHHHHHHHhhh
Q 030429 159 SINIDAVIDWLIKHSKT 175 (177)
Q Consensus 159 ~~~i~~l~~~l~~~~~~ 175 (177)
|.|+++|.+.|.+.+..
T Consensus 341 ~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 341 GEGLDLLRERIIELLSG 357 (411)
T ss_pred CcCHHHHHHHHHHHhhh
Confidence 99999999999988763
No 239
>PRK13351 elongation factor G; Reviewed
Probab=99.80 E-value=5.7e-18 Score=136.18 Aligned_cols=116 Identities=24% Similarity=0.206 Sum_probs=88.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCC-------------CCC-------CCCCccceeEEEEEeCCEEEEEEecCCch
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGG-------------YSE-------DMIPTVGFNMRKVTKGNVTIKLWDLGGQR 68 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~-------------~~~-------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 68 (177)
..+..||+++|+.|+|||||+++|+... +.. ....|.......+..++..+++|||||+.
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~ 84 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI 84 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH
Confidence 3456799999999999999999998421 000 12335555555677789999999999999
Q ss_pred hhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030429 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 129 (177)
+|...+..+++.+|++++|+|+++........ .+..+.. .++|+++|+||+|+...
T Consensus 85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~-~~~~~~~----~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTET-VWRQADR----YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHh----cCCCEEEEEECCCCCCC
Confidence 99888888999999999999998876655433 3333322 36899999999998753
No 240
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.80 E-value=2.1e-18 Score=122.82 Aligned_cols=155 Identities=21% Similarity=0.211 Sum_probs=109.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEeCCEEEEEEecCCchhhH-------HhHHHHhcC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR-------TMWERYCRG 80 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~ 80 (177)
.-...++++|.|++|||||++.+.+...... ...|....-..+++++.++++.|+||.-... .......+.
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 3458999999999999999999997654333 3345555556688999999999999832221 222345788
Q ss_pred CCEEEEEEeCCCCCC-HHHHHHHHHHHHcC--------------------------------------------------
Q 030429 81 VSAILYVVDAADRDS-VPIARSELHELLMK-------------------------------------------------- 109 (177)
Q Consensus 81 ~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~-------------------------------------------------- 109 (177)
||++++|+|+..... .+.+...+...--.
T Consensus 141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I 220 (365)
T COG1163 141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI 220 (365)
T ss_pred CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence 999999999975443 33333333321000
Q ss_pred --------------CCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 110 --------------PSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 110 --------------~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
.+...+|+++|.||+|+...+....+.+.. .++++||+.+.|+++|.+.|.+.+.
T Consensus 221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~----------~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARKP----------NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred ecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhcc----------ceEEEecccCCCHHHHHHHHHHhhC
Confidence 000357999999999998865554444444 4899999999999999999999864
No 241
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.80 E-value=2.1e-19 Score=136.13 Aligned_cols=163 Identities=18% Similarity=0.200 Sum_probs=123.9
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
..++.+||+++|+.|||||||+-+++...+.....+..+..... +....+..+++|++...+.+......++.+|+++
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~ 84 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC 84 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence 45678999999999999999999999888877766655433333 4566777999999988777777778899999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCC--CCCCcEEEEeeCCCcccccCH--HH-HHHHhCcccccCCceeEEEeeecCCC
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPS--LSGIPLLVLGNKIDKSEALSK--QA-LVDQLGLESITDREVCCYMISCKDSI 160 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiv~nK~D~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (177)
++|+.+++++++.+...|..++.+.. ..++|+|+|+||+|..+.... +. ....+... ..--.+++|||++-.
T Consensus 85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f---~EiEtciecSA~~~~ 161 (625)
T KOG1707|consen 85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAF---AEIETCIECSALTLA 161 (625)
T ss_pred EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHh---HHHHHHHhhhhhhhh
Confidence 99999999999999888887766633 246899999999998765432 21 11111110 011157899999999
Q ss_pred ChHHHHHHHHHHh
Q 030429 161 NIDAVIDWLIKHS 173 (177)
Q Consensus 161 ~i~~l~~~l~~~~ 173 (177)
++.++|-...+.+
T Consensus 162 n~~e~fYyaqKaV 174 (625)
T KOG1707|consen 162 NVSELFYYAQKAV 174 (625)
T ss_pred hhHhhhhhhhhee
Confidence 9999998776654
No 242
>PLN03127 Elongation factor Tu; Provisional
Probab=99.80 E-value=5.3e-18 Score=129.49 Aligned_cols=161 Identities=18% Similarity=0.159 Sum_probs=105.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcC------CC------------CCCCCCccceeEEEEEeCCEEEEEEecCCchhh
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATG------GY------------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF 70 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~------~~------------~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 70 (177)
.+..++|+++|..++|||||+++|.+. .. .....-|.......++.++.++.++||||+.+|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 467799999999999999999999621 10 111223444445556667789999999999998
Q ss_pred HHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCcccccCH-HHH----HHHhCcccc
Q 030429 71 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALSK-QAL----VDQLGLESI 144 (177)
Q Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~-~~~----~~~~~~~~~ 144 (177)
.......+..+|++++|+|+++... ......+..+ .. .++| +++++||+|+.+.... +.+ .+.+....+
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~-~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~ 212 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLA-RQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF 212 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHH-HH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 7777777778999999999876432 2223333333 22 3578 5778999999753222 112 222221122
Q ss_pred cCCceeEEEeeec---CCCC-------hHHHHHHHHHHhh
Q 030429 145 TDREVCCYMISCK---DSIN-------IDAVIDWLIKHSK 174 (177)
Q Consensus 145 ~~~~~~~~~~Sa~---~~~~-------i~~l~~~l~~~~~ 174 (177)
....++++++|+. +|.| +.+|++.|.+.+.
T Consensus 213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 2235688888875 4544 7888888887653
No 243
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.79 E-value=2.6e-18 Score=136.83 Aligned_cols=153 Identities=14% Similarity=0.070 Sum_probs=97.9
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCC--CC---------------------------------CCCCccceeEEEE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGY--SE---------------------------------DMIPTVGFNMRKV 52 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~---------------------------------~~~~t~~~~~~~~ 52 (177)
..+..++|+++|++++|||||+++|+...- .. ...-|.......+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 346679999999999999999999984221 10 0111233334445
Q ss_pred EeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--
Q 030429 53 TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL-- 130 (177)
Q Consensus 53 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~-- 130 (177)
..++.++.++||||+++|.......+..+|++++|+|++....-. ....+..+ ... ...++++++||+|+.+..
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~-t~e~~~~~-~~~--~~~~iivvvNK~D~~~~~~~ 175 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQ-TRRHSFIA-SLL--GIRHVVLAVNKMDLVDYDQE 175 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcccc-CHHHHHHH-HHh--CCCeEEEEEEecccccchhH
Confidence 567788999999999988766666788999999999997643211 11111111 111 235788999999997521
Q ss_pred CHHHHHHHhCc--ccccCCceeEEEeeecCCCChHH
Q 030429 131 SKQALVDQLGL--ESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 131 ~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
..++....+.. ........+++++||++|.|+++
T Consensus 176 ~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 176 VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 12222222211 01112345799999999999874
No 244
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.79 E-value=3.6e-18 Score=108.95 Aligned_cols=161 Identities=17% Similarity=0.262 Sum_probs=116.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCccceeE-EEEEe---CCEEEEEEecCCchhh-HHhHHHHhcCCC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGY--SEDMIPTVGFNM-RKVTK---GNVTIKLWDLGGQRRF-RTMWERYCRGVS 82 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~-~~~~~---~~~~~~~~D~~g~~~~-~~~~~~~~~~~d 82 (177)
-+.-||+++|..++|||+++++++-++. .....+|++-.+ ..++. ..-.+.++||.|-..+ ..+-+.++.-+|
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 3567999999999999999999985443 333445555222 22332 2246889999998777 455567888999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHH-HHHHHhCcccccCCceeEEEeeecCCCC
Q 030429 83 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ-ALVDQLGLESITDREVCCYMISCKDSIN 161 (177)
Q Consensus 83 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 161 (177)
++++||+..|++||......-..+-.......+|+++.+||+|..++.+.+ +..+.+ .....+..+++++.+...
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~W----a~rEkvkl~eVta~dR~s 162 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIW----AKREKVKLWEVTAMDRPS 162 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHH----HhhhheeEEEEEeccchh
Confidence 999999999999998876555555444444568999999999997654332 222222 223345789999999999
Q ss_pred hHHHHHHHHHHhh
Q 030429 162 IDAVIDWLIKHSK 174 (177)
Q Consensus 162 i~~l~~~l~~~~~ 174 (177)
+-|.|..+...+.
T Consensus 163 L~epf~~l~~rl~ 175 (198)
T KOG3883|consen 163 LYEPFTYLASRLH 175 (198)
T ss_pred hhhHHHHHHHhcc
Confidence 9999999988765
No 245
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.79 E-value=1.4e-18 Score=121.45 Aligned_cols=166 Identities=19% Similarity=0.257 Sum_probs=111.3
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCC--CCccceeEEE-EEeCCEEEEEEecCCchh-------hHHhHH
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDM--IPTVGFNMRK-VTKGNVTIKLWDLGGQRR-------FRTMWE 75 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~-~~~~~~~~~~~D~~g~~~-------~~~~~~ 75 (177)
.+....+++|+++|.+|+|||||+|+++++...+.. ..+..+..+. ...+.-.+.+||+||-.+ ++....
T Consensus 33 ~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~ 112 (296)
T COG3596 33 QLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYR 112 (296)
T ss_pred hhcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHH
Confidence 344668899999999999999999999976544333 2233333222 234556789999999544 556667
Q ss_pred HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc----------C--H-HHHHHHhCc-
Q 030429 76 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL----------S--K-QALVDQLGL- 141 (177)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~----------~--~-~~~~~~~~~- 141 (177)
.++...|.+++++++.|+.--.. ...+.++.... .+.++++++|.+|..... + . +...++...
T Consensus 113 d~l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~ 189 (296)
T COG3596 113 DYLPKLDLVLWLIKADDRALGTD-EDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEAL 189 (296)
T ss_pred HHhhhccEEEEeccCCCccccCC-HHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHH
Confidence 78899999999999988753333 33334443332 248999999999986541 0 0 111111111
Q ss_pred ccccCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 142 ESITDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 142 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
.....+-.|++..|.+.+.|++++...+++.+.
T Consensus 190 ~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 190 GRLFQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred HHHHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 111223457888999999999999999998764
No 246
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.79 E-value=9.3e-19 Score=122.26 Aligned_cols=159 Identities=19% Similarity=0.276 Sum_probs=100.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCC---CCccceeEEEEE-eCCEEEEEEecCCchhhHHh-----HHHHhcCCCEE
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDM---IPTVGFNMRKVT-KGNVTIKLWDLGGQRRFRTM-----WERYCRGVSAI 84 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~---~~t~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~-----~~~~~~~~d~~ 84 (177)
||+++|+.||||||+.+.+.++..+.+. .+|.......+. .+...+++||+||+..+... ....++.++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 7999999999999999999866554443 367777766665 56789999999998766443 45678999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcC--CCCCCCcEEEEeeCCCcccccCHHHHHH----HhCccccc--CCceeEEEeee
Q 030429 85 LYVVDAADRDSVPIARSELHELLMK--PSLSGIPLLVLGNKIDKSEALSKQALVD----QLGLESIT--DREVCCYMISC 156 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~iiv~nK~D~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~Sa 156 (177)
|+|+|+.+.+ +.+....+...+.. ...++..+.+.++|+|+..+...++..+ .+...... ...+.++.||.
T Consensus 81 IyV~D~qs~~-~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI 159 (232)
T PF04670_consen 81 IYVFDAQSDD-YDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI 159 (232)
T ss_dssp EEEEETT-ST-CHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred EEEEEccccc-HHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence 9999998554 44433333333222 1235788999999999976544332222 22111111 11478999999
Q ss_pred cCCCChHHHHHHHHHHhh
Q 030429 157 KDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 157 ~~~~~i~~l~~~l~~~~~ 174 (177)
.+. .+-+.|..+++.+.
T Consensus 160 ~D~-Sly~A~S~Ivq~Li 176 (232)
T PF04670_consen 160 WDE-SLYEAWSKIVQKLI 176 (232)
T ss_dssp TST-HHHHHHHHHHHTTS
T ss_pred cCc-HHHHHHHHHHHHHc
Confidence 984 68888888887654
No 247
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.78 E-value=6.7e-18 Score=128.86 Aligned_cols=163 Identities=15% Similarity=0.140 Sum_probs=105.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCC-----CCCccceeEEEE-----------------Ee------------
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSED-----MIPTVGFNMRKV-----------------TK------------ 54 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-----~~~t~~~~~~~~-----------------~~------------ 54 (177)
....++|+++|+...|||||+.+|.+....+- ..-|+...+... ..
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 35678999999999999999999985332111 111111111100 00
Q ss_pred ----CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc
Q 030429 55 ----GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 130 (177)
Q Consensus 55 ----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~ 130 (177)
-...+.++|+||+++|...+...+..+|++++|+|++...........+... ... .-.++++|+||+|+.+.+
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~-~~l--gi~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAV-EIM--KLKHIIILQNKIDLVKEA 187 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHH-HHc--CCCcEEEEEecccccCHH
Confidence 0246889999999999877777788999999999998642222223333222 221 124789999999997643
Q ss_pred CHHHHHHHhCcc--cccCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 131 SKQALVDQLGLE--SITDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 131 ~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
..++..+.+... .......+++++||++|.|+++|++.|.+.+.
T Consensus 188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 333332222211 11224568999999999999999999987554
No 248
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.78 E-value=4.9e-21 Score=125.72 Aligned_cols=162 Identities=22% Similarity=0.269 Sum_probs=125.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEeC---CEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKG---NVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
-++++++|..|+||||++.++++..+...+..|++..... ...+ -+++++||+.||++|-.+..-+++.+++.++
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~i 104 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFI 104 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEE
Confidence 4789999999999999999999888887777777754443 2222 3678999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCC---CCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSL---SGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
|||++....|+....|..++...... .-.|+++..||||.......+ .-..+......+.....+++|++.+.+++
T Consensus 105 Vfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~-~~~~~d~f~kengf~gwtets~Kenkni~ 183 (229)
T KOG4423|consen 105 VFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNE-ATRQFDNFKKENGFEGWTETSAKENKNIP 183 (229)
T ss_pred EEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhh-hHHHHHHHHhccCccceeeeccccccChh
Confidence 99999999999999999887655333 346889999999986542221 11112112222344568999999999999
Q ss_pred HHHHHHHHHhh
Q 030429 164 AVIDWLIKHSK 174 (177)
Q Consensus 164 ~l~~~l~~~~~ 174 (177)
|.-..+++++.
T Consensus 184 Ea~r~lVe~~l 194 (229)
T KOG4423|consen 184 EAQRELVEKIL 194 (229)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 249
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.78 E-value=2.1e-17 Score=128.39 Aligned_cols=116 Identities=20% Similarity=0.260 Sum_probs=82.4
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhc-CCCCCC-----------------------CCCccceeEEEEEeCCEEEEEEe
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIAT-GGYSED-----------------------MIPTVGFNMRKVTKGNVTIKLWD 63 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~-~~~~~~-----------------------~~~t~~~~~~~~~~~~~~~~~~D 63 (177)
+..+..+|+++|.+++|||||+++++. ...... ...+.......++.+++.+++||
T Consensus 7 ~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliD 86 (527)
T TIGR00503 7 EVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLD 86 (527)
T ss_pred hhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEE
Confidence 456678999999999999999999862 111100 01122233345667889999999
Q ss_pred cCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 64 LGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
|||+.+|.......+..+|++++|+|+++.. ......++. .... .++|+++++||+|+..
T Consensus 87 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~-~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 87 TPGHEDFSEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLME-VTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred CCChhhHHHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHH-HHHh---cCCCEEEEEECccccC
Confidence 9999988877777889999999999997742 122233333 3332 4689999999999853
No 250
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.77 E-value=1.3e-17 Score=122.64 Aligned_cols=134 Identities=20% Similarity=0.270 Sum_probs=103.2
Q ss_pred CCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCC----------CCHHHHHHHHHHHHcCCC
Q 030429 42 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADR----------DSVPIARSELHELLMKPS 111 (177)
Q Consensus 42 ~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~ 111 (177)
.+|.|+....+..++..+.+||++|+...+..|..++.+++++++|+|+++. ..+.+....+..++....
T Consensus 146 ~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~ 225 (317)
T cd00066 146 VKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRW 225 (317)
T ss_pred cccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcc
Confidence 4577777777888899999999999999999999999999999999999874 356777888888888777
Q ss_pred CCCCcEEEEeeCCCcccc------------------cCHHHHHHHhCccc-----ccCCceeEEEeeecCCCChHHHHHH
Q 030429 112 LSGIPLLVLGNKIDKSEA------------------LSKQALVDQLGLES-----ITDREVCCYMISCKDSINIDAVIDW 168 (177)
Q Consensus 112 ~~~~~~iiv~nK~D~~~~------------------~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~l~~~ 168 (177)
..+.|+++++||.|+... ...++..+.+...+ ...+.+..+.++|.+-.+++.+|+.
T Consensus 226 ~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~ 305 (317)
T cd00066 226 FANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDA 305 (317)
T ss_pred ccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHH
Confidence 778999999999996432 11222222221111 1234566678999999999999999
Q ss_pred HHHHhhh
Q 030429 169 LIKHSKT 175 (177)
Q Consensus 169 l~~~~~~ 175 (177)
+.+.+..
T Consensus 306 v~~~i~~ 312 (317)
T cd00066 306 VKDIILQ 312 (317)
T ss_pred HHHHHHH
Confidence 9887764
No 251
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.77 E-value=1.9e-17 Score=118.86 Aligned_cols=171 Identities=22% Similarity=0.240 Sum_probs=116.3
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCccceeEEEEEe-CCEEEEEEecCCchhhHH-------
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATGGY--SEDMIPTVGFNMRKVTK-GNVTIKLWDLGGQRRFRT------- 72 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~------- 72 (177)
+...++.+--..|.++|.|++|||||++.+...+. ......|.......+.. ..-.|.+-|+||.-...+
T Consensus 150 r~v~LELKllADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~ 229 (369)
T COG0536 150 RDLRLELKLLADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGL 229 (369)
T ss_pred EEEEEEEeeecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccH
Confidence 34567777788899999999999999999986553 23333455555555553 455699999999322211
Q ss_pred hHHHHhcCCCEEEEEEeCCCCC---CHHHHHHHHHHHHcC-CCCCCCcEEEEeeCCCcccc-cCHHHHHHHhCcccccCC
Q 030429 73 MWERYCRGVSAILYVVDAADRD---SVPIARSELHELLMK-PSLSGIPLLVLGNKIDKSEA-LSKQALVDQLGLESITDR 147 (177)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~iiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~ 147 (177)
..-.+++.|.+++.|+|++..+ ..+.......++..+ .....+|.++|+||+|+... ++.+++.+.+.....+.
T Consensus 230 ~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~- 308 (369)
T COG0536 230 RFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWE- 308 (369)
T ss_pred HHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCC-
Confidence 1123467799999999998654 355555555555444 33457899999999996543 44445555554322222
Q ss_pred ceeEEEeeecCCCChHHHHHHHHHHhhhc
Q 030429 148 EVCCYMISCKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 148 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 176 (177)
..+++|+.++.|++++...+.+.+.+.
T Consensus 309 --~~~~ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 309 --VFYLISALTREGLDELLRALAELLEET 335 (369)
T ss_pred --cceeeehhcccCHHHHHHHHHHHHHHh
Confidence 122299999999999999999987754
No 252
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=4.1e-17 Score=123.28 Aligned_cols=157 Identities=22% Similarity=0.259 Sum_probs=113.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEEe---CCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTK---GNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
+..-|++||+...|||||+..+-.........- |..+.-+.+.. +...+.++|||||+-|..+...-..-+|.++
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 456789999999999999999986665433222 33333444443 3468889999999999998888888899999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccc----cCCceeEEEeeecCCCC
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI----TDREVCCYMISCKDSIN 161 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~ 161 (177)
+|++++|.-.-+.... . .+....+.|++++.||+|+++. .++....++..... +.+...++++||++|+|
T Consensus 84 LVVa~dDGv~pQTiEA--I---~hak~a~vP~iVAiNKiDk~~~-np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~G 157 (509)
T COG0532 84 LVVAADDGVMPQTIEA--I---NHAKAAGVPIVVAINKIDKPEA-NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEG 157 (509)
T ss_pred EEEEccCCcchhHHHH--H---HHHHHCCCCEEEEEecccCCCC-CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCC
Confidence 9999987543333222 1 2223358999999999999854 34444444433222 34567899999999999
Q ss_pred hHHHHHHHHHHh
Q 030429 162 IDAVIDWLIKHS 173 (177)
Q Consensus 162 i~~l~~~l~~~~ 173 (177)
+++|++.+.-.+
T Consensus 158 i~eLL~~ill~a 169 (509)
T COG0532 158 IDELLELILLLA 169 (509)
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 253
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.76 E-value=5.9e-17 Score=102.65 Aligned_cols=104 Identities=24% Similarity=0.248 Sum_probs=71.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEEeCCEEEEEEecCCchhh---------HHhHHHHhcCC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF---------RTMWERYCRGV 81 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~~~~ 81 (177)
+|+++|.+|+|||||+|+|++... ......|.......+..++..+.++||||.... .......+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 689999999999999999997532 222334555555566778899999999994321 11223345889
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 030429 82 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNK 123 (177)
Q Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK 123 (177)
|++++|+|++++ .-+.....+..+ . .++|+++|+||
T Consensus 81 d~ii~vv~~~~~-~~~~~~~~~~~l-~----~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNP-ITEDDKNILREL-K----NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSH-SHHHHHHHHHHH-H----TTSEEEEEEES
T ss_pred CEEEEEEECCCC-CCHHHHHHHHHH-h----cCCCEEEEEcC
Confidence 999999997662 112223333333 2 47999999998
No 254
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.76 E-value=2.7e-17 Score=121.85 Aligned_cols=134 Identities=19% Similarity=0.284 Sum_probs=102.3
Q ss_pred CCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCC----------CCHHHHHHHHHHHHcCCC
Q 030429 42 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADR----------DSVPIARSELHELLMKPS 111 (177)
Q Consensus 42 ~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~ 111 (177)
.+|.|+....+..++..+.+||++|+...+..|..++.+++++++|+|+++. ..+.+....+..++....
T Consensus 169 ~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~ 248 (342)
T smart00275 169 VPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRW 248 (342)
T ss_pred CCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcc
Confidence 3566777777888899999999999999999999999999999999999974 357777888888888777
Q ss_pred CCCCcEEEEeeCCCccccc-----------------CHHHHHHHhCc----ccc--cCCceeEEEeeecCCCChHHHHHH
Q 030429 112 LSGIPLLVLGNKIDKSEAL-----------------SKQALVDQLGL----ESI--TDREVCCYMISCKDSINIDAVIDW 168 (177)
Q Consensus 112 ~~~~~~iiv~nK~D~~~~~-----------------~~~~~~~~~~~----~~~--~~~~~~~~~~Sa~~~~~i~~l~~~ 168 (177)
..+.|+++++||.|+.... +.+...+.+.. ... ..+.+-.+.+||.+-.++..+|+.
T Consensus 249 ~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~ 328 (342)
T smart00275 249 FANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDA 328 (342)
T ss_pred ccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHH
Confidence 7789999999999975421 11222222111 111 224456678999999999999999
Q ss_pred HHHHhhh
Q 030429 169 LIKHSKT 175 (177)
Q Consensus 169 l~~~~~~ 175 (177)
+.+.+.+
T Consensus 329 v~~~I~~ 335 (342)
T smart00275 329 VKDIILQ 335 (342)
T ss_pred HHHHHHH
Confidence 8887654
No 255
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=1.5e-17 Score=122.09 Aligned_cols=154 Identities=21% Similarity=0.157 Sum_probs=105.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcC---------------------------------CCCCCCCCccceeEEEEEeC
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATG---------------------------------GYSEDMIPTVGFNMRKVTKG 55 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~---------------------------------~~~~~~~~t~~~~~~~~~~~ 55 (177)
.+..++++++|+..+|||||+-+|+-. ...+...-|+......++.+
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 466799999999999999999999810 11233444666666667788
Q ss_pred CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCC---CH--HHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc
Q 030429 56 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD---SV--PIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 130 (177)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~ 130 (177)
.+.+.++|+||+++|-..+.....+||++++|+|+++.+ ++ ....+.-.-+.... .-...|+++||+|..+..
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl--Gi~~lIVavNKMD~v~wd 161 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL--GIKQLIVAVNKMDLVSWD 161 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc--CCceEEEEEEcccccccC
Confidence 899999999999999988888889999999999998763 11 11111111111221 234688889999998743
Q ss_pred C--HHH----HHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 131 S--KQA----LVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 131 ~--~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
+ .++ +...+....+.....+|+++|+..|.|+.+
T Consensus 162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 2 222 222222233334467899999999998754
No 256
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.76 E-value=5.6e-17 Score=111.91 Aligned_cols=161 Identities=17% Similarity=0.050 Sum_probs=98.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCC----CCccceeEEEEEeCCEEEEEEecCCchhhH-------HhHH----HH
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDM----IPTVGFNMRKVTKGNVTIKLWDLGGQRRFR-------TMWE----RY 77 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~----~~ 77 (177)
++|+++|.+|+|||||+|++++....... ..|..........++..+.++||||-.... .... ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 47999999999999999999976543222 345555666666788999999999943321 1111 12
Q ss_pred hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCC-CCCcEEEEeeCCCcccccCHHHHHHHhCc------ccccCCcee
Q 030429 78 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSL-SGIPLLVLGNKIDKSEALSKQALVDQLGL------ESITDREVC 150 (177)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~ 150 (177)
..+.|++++|+++... + ......+..+...... .-.+++++.|++|.......++....... .....+.+.
T Consensus 81 ~~g~~~illVi~~~~~-t-~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~ 158 (196)
T cd01852 81 APGPHAFLLVVPLGRF-T-EEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA 158 (196)
T ss_pred CCCCEEEEEEEECCCc-C-HHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence 4578999999998762 2 2222223333222121 12578999999998765443332222110 001111111
Q ss_pred EEEe--eecCCCChHHHHHHHHHHhhh
Q 030429 151 CYMI--SCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 151 ~~~~--Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
+-.. |+..+.++++|++.|.+++.+
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 1112 367788999999999998875
No 257
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=2.5e-17 Score=124.36 Aligned_cols=158 Identities=18% Similarity=0.217 Sum_probs=116.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCC-----------------CCCCCCCccceeEEEEEeCC---EEEEEEecCCchh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGG-----------------YSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQRR 69 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~-----------------~~~~~~~t~~~~~~~~~~~~---~~~~~~D~~g~~~ 69 (177)
.+--|+.|+-+-..|||||..+++... ..+..+-|+..++..+.+.+ +.++++|||||.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 556789999999999999999998321 12333445555555555555 9999999999999
Q ss_pred hHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCce
Q 030429 70 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREV 149 (177)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 149 (177)
|.......+.-|+++++|+|++..-.-+.....+..+ + .+..+|.|+||+|++.. +.+++..++. ..+.....
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAf-e----~~L~iIpVlNKIDlp~a-dpe~V~~q~~-~lF~~~~~ 210 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAF-E----AGLAIIPVLNKIDLPSA-DPERVENQLF-ELFDIPPA 210 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHH-H----cCCeEEEeeeccCCCCC-CHHHHHHHHH-HHhcCCcc
Confidence 9988888899999999999997754333333333333 2 36789999999999875 3445444443 23334445
Q ss_pred eEEEeeecCCCChHHHHHHHHHHhh
Q 030429 150 CCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 150 ~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
.++.+||++|.|+++++++|++.+.
T Consensus 211 ~~i~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 211 EVIYVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred ceEEEEeccCccHHHHHHHHHhhCC
Confidence 7999999999999999999999764
No 258
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.75 E-value=2.8e-17 Score=114.82 Aligned_cols=109 Identities=24% Similarity=0.241 Sum_probs=77.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC--CC----------------CCCCccceeEE--EEE--------eCCEEEEEEecC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGY--SE----------------DMIPTVGFNMR--KVT--------KGNVTIKLWDLG 65 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~--~~----------------~~~~t~~~~~~--~~~--------~~~~~~~~~D~~ 65 (177)
+|+++|+.++|||||+.+|+...- .. ...-|+..... .+. ..++.+++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 799999999999999999974321 00 01112222111 122 227889999999
Q ss_pred CchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030429 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127 (177)
Q Consensus 66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 127 (177)
|+.+|......++..+|++++|+|+++...... ...+..... .++|+++|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence 999999999999999999999999987654443 233333322 357999999999975
No 259
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=6.8e-17 Score=120.69 Aligned_cols=166 Identities=19% Similarity=0.169 Sum_probs=110.3
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEEeCCEEEEEEecCCchhhH---------HhHH
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR---------TMWE 75 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~~~~ 75 (177)
..+..++|+++|+||+|||||+|.|.+... .+..+.|-......++.+++.+.+.||+|.++-. ....
T Consensus 264 ~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 264 RLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERAR 343 (531)
T ss_pred HhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHH
Confidence 346679999999999999999999997653 4445556666677788999999999999965511 1112
Q ss_pred HHhcCCCEEEEEEeC--CCCCCHHHHHHHHHHHHcC-----CCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccC
Q 030429 76 RYCRGVSAILYVVDA--ADRDSVPIARSELHELLMK-----PSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITD 146 (177)
Q Consensus 76 ~~~~~~d~~i~v~d~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~ 146 (177)
..+..+|++++|+|+ ++-++-..+...+...... ....+.|++++.||.|+...- .........+. ....
T Consensus 344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~~ 422 (531)
T KOG1191|consen 344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-EGRS 422 (531)
T ss_pred HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc-ccCc
Confidence 347789999999999 4433333333333332111 222357999999999987651 11111111111 1111
Q ss_pred CceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 147 REVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 147 ~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
..-...++|+++++|+++|.+.+...+.
T Consensus 423 ~~~i~~~vs~~tkeg~~~L~~all~~~~ 450 (531)
T KOG1191|consen 423 VFPIVVEVSCTTKEGCERLSTALLNIVE 450 (531)
T ss_pred ccceEEEeeechhhhHHHHHHHHHHHHH
Confidence 2224556999999999999999987654
No 260
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.75 E-value=6.1e-17 Score=130.14 Aligned_cols=116 Identities=20% Similarity=0.165 Sum_probs=85.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCC--C------CC------------CCCCccceeEEEEEeCCEEEEEEecCCch
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGG--Y------SE------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQR 68 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~--~------~~------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 68 (177)
..+-.+|+++|.+++|||||+++|+... . .. ....|.......+..++.++.+|||||+.
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 86 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHV 86 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCc
Confidence 3455699999999999999999997311 1 00 12224444555677789999999999999
Q ss_pred hhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030429 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 129 (177)
++......++..+|++++|+|+++...... ...+..... .++|+++++||+|+...
T Consensus 87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~~~----~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQS-ETVWRQANR----YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred chhHHHHHHHHHhCEEEEEEeCCCCCChhH-HHHHHHHHH----cCCCEEEEEECCCCCCC
Confidence 888888888999999999999987544432 233333322 36899999999999764
No 261
>PRK12739 elongation factor G; Reviewed
Probab=99.75 E-value=1.6e-16 Score=127.64 Aligned_cols=117 Identities=20% Similarity=0.176 Sum_probs=86.1
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCC--------CC------------CCCCCccceeEEEEEeCCEEEEEEecCCc
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGG--------YS------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQ 67 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~--------~~------------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~ 67 (177)
...+-.+|+++|.+++|||||+++|+... .. ....-|.......+..++.+++++||||+
T Consensus 4 ~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~ 83 (691)
T PRK12739 4 PLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGH 83 (691)
T ss_pred CccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCH
Confidence 34566799999999999999999997321 01 12233555555667778999999999999
Q ss_pred hhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030429 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 129 (177)
.+|...+...+..+|++++|+|+.+...... ...+..... .++|+++++||+|+...
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~----~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK----YGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCCCCC
Confidence 9888888888999999999999977533222 233333322 36899999999998753
No 262
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=6.7e-17 Score=108.81 Aligned_cols=163 Identities=26% Similarity=0.373 Sum_probs=112.9
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhc---CCCEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCR---GVSAIL 85 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~---~~d~~i 85 (177)
..+.-.|+++|+.+||||+|.-+|..+.. +.....++.+...+..++...+++|.||+.+.+.....++. .+-+++
T Consensus 35 rs~~~~Vll~Gl~dSGKT~LF~qL~~gs~-~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 35 RSKQNAVLLVGLSDSGKTSLFTQLITGSH-RGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred hccCCcEEEEecCCCCceeeeeehhcCCc-cCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 34456899999999999999999987743 34444555566666677777899999999999988888877 688999
Q ss_pred EEEeCCC-CCCHHHHHHHHHHHHcCC--CCCCCcEEEEeeCCCcccccCHHHHHHHhCc---------------------
Q 030429 86 YVVDAAD-RDSVPIARSELHELLMKP--SLSGIPLLVLGNKIDKSEALSKQALVDQLGL--------------------- 141 (177)
Q Consensus 86 ~v~d~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~--------------------- 141 (177)
+|+|... ..........+-.++... ....+|++++.||.|+.-....+.+.+.++.
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~ 193 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIA 193 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence 9999854 223334444444443433 2346899999999998765443222222210
Q ss_pred ----------c----cccCCceeEEEeeecCCCChHHHHHHHHHHh
Q 030429 142 ----------E----SITDREVCCYMISCKDSINIDAVIDWLIKHS 173 (177)
Q Consensus 142 ----------~----~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 173 (177)
. ......+.|.++|++++ +++++-+|+.+.+
T Consensus 194 ~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 194 KDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred ccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 0 01112467889999999 7999999998753
No 263
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.75 E-value=2.1e-16 Score=115.73 Aligned_cols=155 Identities=23% Similarity=0.273 Sum_probs=95.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEE------------------------eCCEEEEEEecCCc-
Q 030429 15 LSLIGLQNAGKTSLVNTIATGGYSEDM--IPTVGFNMRKVT------------------------KGNVTIKLWDLGGQ- 67 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~------------------------~~~~~~~~~D~~g~- 67 (177)
|+++|.|+||||||++++++....... ..|...+..... ...+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 589999999999999999977643211 122222222111 13368999999996
Q ss_pred ---hhhHHhHHH---HhcCCCEEEEEEeCCCC-------------CCHHHH---HHHHH---------------------
Q 030429 68 ---RRFRTMWER---YCRGVSAILYVVDAADR-------------DSVPIA---RSELH--------------------- 104 (177)
Q Consensus 68 ---~~~~~~~~~---~~~~~d~~i~v~d~~~~-------------~~~~~~---~~~~~--------------------- 104 (177)
.++..+... .++++|++++|+|++.. +....+ ...+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344443333 58899999999999731 111111 00000
Q ss_pred -----------------------HHHcCC---------------------CCCCCcEEEEeeCCCcccccCHHHHHHHhC
Q 030429 105 -----------------------ELLMKP---------------------SLSGIPLLVLGNKIDKSEALSKQALVDQLG 140 (177)
Q Consensus 105 -----------------------~~~~~~---------------------~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~ 140 (177)
.++... ....+|+++|+||+|+..... ..+.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~---~~~~l~ 237 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAEN---NISKLR 237 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHH---HHHHHH
Confidence 000000 013579999999999854322 222222
Q ss_pred cccccCCceeEEEeeecCCCChHHHHH-HHHHHhhh
Q 030429 141 LESITDREVCCYMISCKDSINIDAVID-WLIKHSKT 175 (177)
Q Consensus 141 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~-~l~~~~~~ 175 (177)
. ......++++||+.+.+++++.+ .+.+.+.+
T Consensus 238 ~---~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 238 L---KYPDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred h---hCCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 1 11234799999999999999998 68888754
No 264
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.74 E-value=4.7e-18 Score=114.05 Aligned_cols=119 Identities=22% Similarity=0.316 Sum_probs=72.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEe---CCEEEEEEecCCchhhHHhHHH---HhcCCCEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK---GNVTIKLWDLGGQRRFRTMWER---YCRGVSAIL 85 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~---~~~~~d~~i 85 (177)
.-.|+++|++|+|||+|..+|..+...+...+. .... .... .+..+.++|+||+.+.+..... +...+.++|
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 457899999999999999999988554444443 2222 2222 4467889999999988765554 478899999
Q ss_pred EEEeCCC-CCCHHHHHHHHHHHHcC--CCCCCCcEEEEeeCCCcccccCH
Q 030429 86 YVVDAAD-RDSVPIARSELHELLMK--PSLSGIPLLVLGNKIDKSEALSK 132 (177)
Q Consensus 86 ~v~d~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~iiv~nK~D~~~~~~~ 132 (177)
+|+|++. +....+....+-.++.. .....+|++++.||.|+......
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~ 130 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPP 130 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---H
T ss_pred EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCH
Confidence 9999874 22333333333333332 12356899999999998775443
No 265
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=4.8e-16 Score=117.54 Aligned_cols=162 Identities=22% Similarity=0.257 Sum_probs=117.3
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEE-eCCEEEEEEecCCchhhHHhHHHHhcCCCE
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMI--PTVGFNMRKVT-KGNVTIKLWDLGGQRRFRTMWERYCRGVSA 83 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (177)
+..+++.-|-+||....|||||+..|-+........ -|..+.-..+. .++-.+++.||||+.-|..+........|.
T Consensus 148 ~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDI 227 (683)
T KOG1145|consen 148 LLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDI 227 (683)
T ss_pred hcCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccE
Confidence 344577789999999999999999997655433221 12222222222 256889999999999999988888889999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCccccc----CCceeEEEeeecCC
Q 030429 84 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESIT----DREVCCYMISCKDS 159 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~ 159 (177)
+++|+.+.|.-.-+. .+.+.+....+.|+++++||+|.++. .+++..+++...... .....++++||++|
T Consensus 228 vVLVVAadDGVmpQT-----~EaIkhAk~A~VpiVvAinKiDkp~a-~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g 301 (683)
T KOG1145|consen 228 VVLVVAADDGVMPQT-----LEAIKHAKSANVPIVVAINKIDKPGA-NPEKVKRELLSQGIVVEDLGGDVQVIPISALTG 301 (683)
T ss_pred EEEEEEccCCccHhH-----HHHHHHHHhcCCCEEEEEeccCCCCC-CHHHHHHHHHHcCccHHHcCCceeEEEeecccC
Confidence 999999977543332 22334444468999999999998754 455555555433322 24578999999999
Q ss_pred CChHHHHHHHHHHhh
Q 030429 160 INIDAVIDWLIKHSK 174 (177)
Q Consensus 160 ~~i~~l~~~l~~~~~ 174 (177)
.|++.|.+.+.-.+.
T Consensus 302 ~nl~~L~eaill~Ae 316 (683)
T KOG1145|consen 302 ENLDLLEEAILLLAE 316 (683)
T ss_pred CChHHHHHHHHHHHH
Confidence 999999999876543
No 266
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.70 E-value=1.3e-15 Score=114.63 Aligned_cols=79 Identities=23% Similarity=0.324 Sum_probs=53.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCC-C-CCccceeEEEEE------------------------eCCEEEEEEecCC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSED-M-IPTVGFNMRKVT------------------------KGNVTIKLWDLGG 66 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~-~-~~t~~~~~~~~~------------------------~~~~~~~~~D~~g 66 (177)
++|+++|.|++|||||+|++++...... + ..|......... .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 5899999999999999999997765432 1 123222222211 1236789999999
Q ss_pred c----hhhHHhHH---HHhcCCCEEEEEEeCC
Q 030429 67 Q----RRFRTMWE---RYCRGVSAILYVVDAA 91 (177)
Q Consensus 67 ~----~~~~~~~~---~~~~~~d~~i~v~d~~ 91 (177)
. ..+..+-. ..++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 22333222 3478899999999997
No 267
>PRK12740 elongation factor G; Reviewed
Probab=99.69 E-value=1.2e-15 Score=122.53 Aligned_cols=106 Identities=22% Similarity=0.204 Sum_probs=78.2
Q ss_pred EcCCCCCHHHHHHHHhcCCC--------C------------CCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHH
Q 030429 18 IGLQNAGKTSLVNTIATGGY--------S------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERY 77 (177)
Q Consensus 18 ~G~~~~GKSsli~~l~~~~~--------~------------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 77 (177)
+|++++|||||+++|+...- . .....|.+.....+..+++.+++|||||+.++...+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 59999999999999963211 0 012234445555677889999999999999888878888
Q ss_pred hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 78 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
+..+|++++|+|+++....... ..+..... .++|+++|+||+|...
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~----~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK----YGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH----cCCCEEEEEECCCCCC
Confidence 9999999999999886544432 23333322 3689999999999864
No 268
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.69 E-value=4e-16 Score=96.44 Aligned_cols=138 Identities=17% Similarity=0.157 Sum_probs=91.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCC----chhhHHhHHHHhcCCCEEEEEEe
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG----QRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g----~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
|+.++|..|||||||.+++-+...--...+ -+++++- -.+|||| +......+.....++|++++|-.
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lykKTQ-------Ave~~d~--~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~ 73 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYKKTQ-------AVEFNDK--GDIDTPGEYFEHPRWYHALITTLQDADVIIYVHA 73 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhcccc-------eeeccCc--cccCCchhhhhhhHHHHHHHHHhhccceeeeeec
Confidence 789999999999999999974432221111 1222111 1349999 33333444455788999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHH
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 169 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 169 (177)
++++++.-.. . .......|+|-|++|+|+.+....+...+.+.... ..++|.+|+.++.|++++++.|
T Consensus 74 and~~s~f~p--~------f~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaG----a~~IF~~s~~d~~gv~~l~~~L 141 (148)
T COG4917 74 ANDPESRFPP--G------FLDIGVKKVIGVVTKADLAEDADISLVKRWLREAG----AEPIFETSAVDNQGVEELVDYL 141 (148)
T ss_pred ccCccccCCc--c------cccccccceEEEEecccccchHhHHHHHHHHHHcC----CcceEEEeccCcccHHHHHHHH
Confidence 9998543210 0 11113457999999999998666554444443322 1269999999999999999998
Q ss_pred HHH
Q 030429 170 IKH 172 (177)
Q Consensus 170 ~~~ 172 (177)
...
T Consensus 142 ~~~ 144 (148)
T COG4917 142 ASL 144 (148)
T ss_pred Hhh
Confidence 764
No 269
>PRK00007 elongation factor G; Reviewed
Probab=99.69 E-value=1.5e-15 Score=122.09 Aligned_cols=145 Identities=18% Similarity=0.140 Sum_probs=94.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc--CCC------C------------CCCCCccceeEEEEEeCCEEEEEEecCCch
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT--GGY------S------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQR 68 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~--~~~------~------------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 68 (177)
.++-.+|+++|.+++|||||+++|+. +.. . .....|.......+..++..++++||||+.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 44567999999999999999999973 111 1 112224444445566788999999999999
Q ss_pred hhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCc
Q 030429 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDRE 148 (177)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 148 (177)
+|.......+..+|++++|+|+...-.... ...+..+.. .++|.++++||+|+.+.. ..+..+.+.........
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~----~~~p~iv~vNK~D~~~~~-~~~~~~~i~~~l~~~~~ 160 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADK----YKVPRIAFVNKMDRTGAD-FYRVVEQIKDRLGANPV 160 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHH----cCCCEEEEEECCCCCCCC-HHHHHHHHHHHhCCCee
Confidence 888777778899999999999876532222 223333322 368999999999998643 33333333221111122
Q ss_pred eeEEEeeecCC
Q 030429 149 VCCYMISCKDS 159 (177)
Q Consensus 149 ~~~~~~Sa~~~ 159 (177)
...+++|+..+
T Consensus 161 ~~~ipisa~~~ 171 (693)
T PRK00007 161 PIQLPIGAEDD 171 (693)
T ss_pred eEEecCccCCc
Confidence 23455565544
No 270
>PRK09866 hypothetical protein; Provisional
Probab=99.69 E-value=3.1e-15 Score=116.15 Aligned_cols=113 Identities=19% Similarity=0.190 Sum_probs=73.2
Q ss_pred EEEEEEecCCchh-----hHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC
Q 030429 57 VTIKLWDLGGQRR-----FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS 131 (177)
Q Consensus 57 ~~~~~~D~~g~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~ 131 (177)
.++.++||||... ....+...+..+|++++|+|++..-+..+ ..+...+.... ...|+++|+||+|..+...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~-K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVG-QSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcC-CCCCEEEEEEcccCCCccc
Confidence 5678899999543 22234457899999999999976433332 22333333211 1359999999999864322
Q ss_pred --HHHHHHHhCcc--cccCCceeEEEeeecCCCChHHHHHHHHHH
Q 030429 132 --KQALVDQLGLE--SITDREVCCYMISCKDSINIDAVIDWLIKH 172 (177)
Q Consensus 132 --~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 172 (177)
.+.+.+..... ........++++||+.|.|++++++.|...
T Consensus 307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 33443432211 112234579999999999999999999873
No 271
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.68 E-value=1.5e-15 Score=110.96 Aligned_cols=135 Identities=18% Similarity=0.294 Sum_probs=104.9
Q ss_pred CCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCC----------CHHHHHHHHHHHHcCC
Q 030429 41 MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD----------SVPIARSELHELLMKP 110 (177)
Q Consensus 41 ~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------~~~~~~~~~~~~~~~~ 110 (177)
..+|.|+....++.++..+.++|+|||+.-+..|...+.+++++++|+++|+.+ .+.+....+..++...
T Consensus 179 R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~ 258 (354)
T KOG0082|consen 179 RVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK 258 (354)
T ss_pred ccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc
Confidence 456888999999999999999999999999999999999999999999998633 2445677788888887
Q ss_pred CCCCCcEEEEeeCCCccccc-----------------CHHHHHHHhCc-----ccccCCceeEEEeeecCCCChHHHHHH
Q 030429 111 SLSGIPLLVLGNKIDKSEAL-----------------SKQALVDQLGL-----ESITDREVCCYMISCKDSINIDAVIDW 168 (177)
Q Consensus 111 ~~~~~~~iiv~nK~D~~~~~-----------------~~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 168 (177)
-..+.++|+++||.|+.++. ..++....+.. .....+.+-++.++|.+-.+|+.+|..
T Consensus 259 ~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~a 338 (354)
T KOG0082|consen 259 WFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDA 338 (354)
T ss_pred ccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHH
Confidence 88889999999999986531 11222222211 111124556678899999999999999
Q ss_pred HHHHhhh
Q 030429 169 LIKHSKT 175 (177)
Q Consensus 169 l~~~~~~ 175 (177)
+.+.+..
T Consensus 339 v~d~Ii~ 345 (354)
T KOG0082|consen 339 VTDTIIQ 345 (354)
T ss_pred HHHHHHH
Confidence 9988764
No 272
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.68 E-value=5.2e-16 Score=115.70 Aligned_cols=156 Identities=21% Similarity=0.253 Sum_probs=110.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCC-----------------CCCCCCCccceeEEEEE-----eCCEEEEEEecCC
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGG-----------------YSEDMIPTVGFNMRKVT-----KGNVTIKLWDLGG 66 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~-----------------~~~~~~~t~~~~~~~~~-----~~~~~~~~~D~~g 66 (177)
.++--|..++-+-..|||||..|+++.. ..+..+-|+..+...+. .+.+.++++||||
T Consensus 6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG 85 (603)
T COG0481 6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG 85 (603)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence 3445678899999999999999998321 22233334443333322 2559999999999
Q ss_pred chhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC---HHHHHHHhCccc
Q 030429 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS---KQALVDQLGLES 143 (177)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~---~~~~~~~~~~~~ 143 (177)
|-+|.-.....+..|.++++|+|++..-.-+.+...+..+ + .+.-++-|+||+|++.... .+++.+.++...
T Consensus 86 HVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAl-e----~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~ 160 (603)
T COG0481 86 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E----NNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDA 160 (603)
T ss_pred ccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHH-H----cCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCc
Confidence 9999877777788899999999998864444444444443 2 2577899999999987532 233444444322
Q ss_pred ccCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 144 ITDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 144 ~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
-..+.+||++|.||+++++.|++.+.
T Consensus 161 -----~dav~~SAKtG~gI~~iLe~Iv~~iP 186 (603)
T COG0481 161 -----SDAVLVSAKTGIGIEDVLEAIVEKIP 186 (603)
T ss_pred -----chheeEecccCCCHHHHHHHHHhhCC
Confidence 25789999999999999999999875
No 273
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.67 E-value=3.3e-15 Score=107.86 Aligned_cols=113 Identities=17% Similarity=0.259 Sum_probs=70.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCC----------CCCccceeEEE--EEeCC--EEEEEEecCCchhh-------
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSED----------MIPTVGFNMRK--VTKGN--VTIKLWDLGGQRRF------- 70 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~----------~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~------- 70 (177)
.++|+++|++|+|||||+|++++..+... ..+|....... +..++ +.+.+|||||...+
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 58999999999999999999998765433 23343333332 33344 67999999993221
Q ss_pred -----------HHhHH--------HHhc--CCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030429 71 -----------RTMWE--------RYCR--GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 71 -----------~~~~~--------~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 129 (177)
..... ..+. .+|+++++++.+.....+.-...+..+ .. .+|+++|+||+|+...
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l-~~----~v~vi~VinK~D~l~~ 158 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRL-SK----RVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHH-hc----cCCEEEEEECCCcCCH
Confidence 11000 1122 367888888876532212213333333 22 5899999999999664
No 274
>PRK13768 GTPase; Provisional
Probab=99.66 E-value=2.3e-15 Score=107.51 Aligned_cols=117 Identities=19% Similarity=0.118 Sum_probs=73.7
Q ss_pred EEEEEEecCCchhhH---HhHHH---HhcC--CCEEEEEEeCCCCCCHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030429 57 VTIKLWDLGGQRRFR---TMWER---YCRG--VSAILYVVDAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKS 127 (177)
Q Consensus 57 ~~~~~~D~~g~~~~~---~~~~~---~~~~--~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 127 (177)
.++.+||+||+.... ..+.. ++.. .+++++|+|++........ ..++........ .++|+++|+||+|+.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~-~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR-LGLPQIPVLNKADLL 175 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH-cCCCEEEEEEhHhhc
Confidence 368999999976543 22222 2333 8999999999764433332 222222111111 368999999999998
Q ss_pred cccCHHHHHHHhCc----------c---------------cccCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 128 EALSKQALVDQLGL----------E---------------SITDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 128 ~~~~~~~~~~~~~~----------~---------------~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
+..+.++..+.+.. . .......+++++|++++.|+++++++|.+.+.
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 76555444443321 0 00012347899999999999999999988763
No 275
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=1.9e-15 Score=107.79 Aligned_cols=162 Identities=19% Similarity=0.194 Sum_probs=114.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCC-------------------------CCCCccceeEEE-EEeC------CE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSE-------------------------DMIPTVGFNMRK-VTKG------NV 57 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-------------------------~~~~t~~~~~~~-~~~~------~~ 57 (177)
...++|..+|....|||||..++.+--..+ .+.+ ....... .... -.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~-~~y~~~~~C~~cg~~~~l~R 86 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRP-ECYTTEPKCPNCGAETELVR 86 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCC-cccccCCCCCCCCCCccEEE
Confidence 457999999999999999999998421100 0100 0000000 0001 14
Q ss_pred EEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHH
Q 030429 58 TIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVD 137 (177)
Q Consensus 58 ~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~ 137 (177)
.+.++|.||++-....+-....-.|++++|++++.++.-+.....+..+-.. .-..++++.||+|+...+...+-.+
T Consensus 87 ~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi---gik~iiIvQNKIDlV~~E~AlE~y~ 163 (415)
T COG5257 87 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII---GIKNIIIVQNKIDLVSRERALENYE 163 (415)
T ss_pred EEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh---ccceEEEEecccceecHHHHHHHHH
Confidence 6889999999988776666666689999999999998888777777766333 3467899999999988755433333
Q ss_pred HhCc--ccccCCceeEEEeeecCCCChHHHHHHHHHHhhh
Q 030429 138 QLGL--ESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 138 ~~~~--~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
+... ......+.|++++||..+.||+.|+++|.+.+..
T Consensus 164 qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 164 QIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred HHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 3321 2233567899999999999999999999998753
No 276
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.64 E-value=2e-15 Score=110.79 Aligned_cols=108 Identities=14% Similarity=0.048 Sum_probs=68.0
Q ss_pred CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHH-
Q 030429 55 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ- 133 (177)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~- 133 (177)
.++.+.++||+|..+.... ....+|.++++.+... .+.+.......++. .-++|+||+|+.+.....
T Consensus 147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~---gd~iq~~k~gi~E~------aDIiVVNKaDl~~~~~a~~ 214 (332)
T PRK09435 147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGA---GDELQGIKKGIMEL------ADLIVINKADGDNKTAARR 214 (332)
T ss_pred cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCc---hHHHHHHHhhhhhh------hheEEeehhcccchhHHHH
Confidence 3578999999997644433 3556999999976333 33333322222222 238999999987654332
Q ss_pred ---HHHHHhCccccc--CCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 134 ---ALVDQLGLESIT--DREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 134 ---~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
++.+.+...... ....+++.+||+++.|+++|++.|.+.+.
T Consensus 215 ~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 215 AAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 233333221111 11147999999999999999999998653
No 277
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.63 E-value=1.9e-14 Score=102.23 Aligned_cols=122 Identities=15% Similarity=0.085 Sum_probs=75.8
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCccceeEEEEEeCCEEEEEEecCCchhhH-----H-----hH
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSED---MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR-----T-----MW 74 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~-----~-----~~ 74 (177)
.....++|+++|.+|+|||||+|++++...... ...|..........++..+.+|||||-.... . ..
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 345679999999999999999999997654222 1234444444555678899999999954331 0 11
Q ss_pred HHHhc--CCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCC-CCCcEEEEeeCCCcccc
Q 030429 75 ERYCR--GVSAILYVVDAADRDSVPIARSELHELLMKPSL-SGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 75 ~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nK~D~~~~ 129 (177)
..++. ..|++++|..++....-......+..+...... --.++++|.||+|...+
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 22332 578888887775443222222333333222211 12579999999998653
No 278
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.63 E-value=1.4e-14 Score=101.86 Aligned_cols=143 Identities=13% Similarity=0.114 Sum_probs=86.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
...+..|+++|.+|+|||||++.+.+...........+. .......+.++.++||||.. .. ....++.+|++++|+
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVllvi 111 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDI--NA-MIDIAKVADLVLLLI 111 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchH--HH-HHHHHHhcCEEEEEE
Confidence 355678999999999999999999854222111111221 11233467788999999864 22 234467899999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcE-EEEeeCCCcccccC-HHHHHHHhCcccc--cCCceeEEEeeecCCC
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPL-LVLGNKIDKSEALS-KQALVDQLGLESI--TDREVCCYMISCKDSI 160 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiv~nK~D~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~ 160 (177)
|++....... ..+...... .+.|. ++|+||+|+.+... .++..+.+..... ...+.+++++||+++.
T Consensus 112 Da~~~~~~~~--~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 112 DASFGFEMET--FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred ecCcCCCHHH--HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 9976433222 222333222 24664 55999999974322 2333333322111 2245689999998873
No 279
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.63 E-value=1.8e-15 Score=105.88 Aligned_cols=119 Identities=18% Similarity=0.093 Sum_probs=71.2
Q ss_pred EEEEEEecCCchhhHH------hHHHHh--cCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 57 VTIKLWDLGGQRRFRT------MWERYC--RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 57 ~~~~~~D~~g~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
.+..++|||||-.... .+...+ ...-++++|+|.....+...........+......+.|+|+|.||+|+.+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d 195 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSD 195 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccccc
Confidence 4688999999743211 111112 23568888998744332222222222222222235789999999999987
Q ss_pred ccCHHH-------HHHHhCc--cc--------------ccCCceeEEEeeecCCCChHHHHHHHHHHhhh
Q 030429 129 ALSKQA-------LVDQLGL--ES--------------ITDREVCCYMISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 129 ~~~~~~-------~~~~~~~--~~--------------~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
.....+ +.+.++. .. ....+...+.+|+.+|.|.+++|..+.+.+.+
T Consensus 196 ~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 196 SEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDE 265 (366)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence 644322 2222221 00 01235678999999999999999999887754
No 280
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.62 E-value=2e-14 Score=118.26 Aligned_cols=146 Identities=17% Similarity=0.151 Sum_probs=91.5
Q ss_pred CCHHHHHHHHhcCCCCCCCC--CccceeEEEEEeC------------------CEEEEEEecCCchhhHHhHHHHhcCCC
Q 030429 23 AGKTSLVNTIATGGYSEDMI--PTVGFNMRKVTKG------------------NVTIKLWDLGGQRRFRTMWERYCRGVS 82 (177)
Q Consensus 23 ~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~------------------~~~~~~~D~~g~~~~~~~~~~~~~~~d 82 (177)
++||||+.++.+........ -|..+....+..+ ...+.+|||||++.|..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 34999999998766543321 1222222222211 113899999999999888777788899
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--------------HHHHHHH----------
Q 030429 83 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--------------KQALVDQ---------- 138 (177)
Q Consensus 83 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--------------~~~~~~~---------- 138 (177)
++++|+|+++.-.-.. ...+. .+.. .++|+++|+||+|+.+... .++..+.
T Consensus 552 ivlLVVDa~~Gi~~qT-~e~I~-~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~ 626 (1049)
T PRK14845 552 LAVLVVDINEGFKPQT-IEAIN-ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIG 626 (1049)
T ss_pred EEEEEEECcccCCHhH-HHHHH-HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhh
Confidence 9999999986422111 11222 2222 3689999999999864321 0111111
Q ss_pred -hCccc----------ccCCceeEEEeeecCCCChHHHHHHHHHHh
Q 030429 139 -LGLES----------ITDREVCCYMISCKDSINIDAVIDWLIKHS 173 (177)
Q Consensus 139 -~~~~~----------~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 173 (177)
+.... -.....+++++||++|.|+++|++.|....
T Consensus 627 ~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 627 KLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred HHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 11111 013467999999999999999999886543
No 281
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.61 E-value=4.4e-14 Score=102.05 Aligned_cols=122 Identities=16% Similarity=0.098 Sum_probs=74.1
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCCC--CCCC-ccceeEEEEEeCCEEEEEEecCCchhhHHh-------HHH
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSE--DMIP-TVGFNMRKVTKGNVTIKLWDLGGQRRFRTM-------WER 76 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~-t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------~~~ 76 (177)
-...+.++|+++|.+|+||||++|++++..... ...+ +..........++..+.+|||||..+.... ...
T Consensus 33 ~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~ 112 (313)
T TIGR00991 33 EEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKR 112 (313)
T ss_pred cccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHH
Confidence 345678999999999999999999999765321 1111 122222334457889999999996543221 111
Q ss_pred Hh--cCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-CCCCcEEEEeeCCCccc
Q 030429 77 YC--RGVSAILYVVDAADRDSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 77 ~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nK~D~~~ 128 (177)
++ ...|++++|..++.....+.....+..+...++ .--.+.++++|++|..+
T Consensus 113 ~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 113 FLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred HhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 12 258999999766533222222333333322221 11257899999999764
No 282
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.61 E-value=1.4e-15 Score=114.05 Aligned_cols=165 Identities=18% Similarity=0.122 Sum_probs=112.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEeCCEEEEEEecCCchhh----HH--hHH---HH
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGNVTIKLWDLGGQRRF----RT--MWE---RY 77 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~----~~--~~~---~~ 77 (177)
.++.-.++++|-|++|||||++.+........ ..+|.++-...+..+-..+++.||||..+- ++ .+. ..
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITAL 244 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITAL 244 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence 35567899999999999999999986654433 334555666667777889999999993221 11 111 11
Q ss_pred hcCCCEEEEEEeCCCCC--CHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEee
Q 030429 78 CRGVSAILYVVDAADRD--SVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMIS 155 (177)
Q Consensus 78 ~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 155 (177)
.+--.+|+|+.|+|..+ +.......+..+... +.+.|+|+|+||+|....+...+-.+.+-.......+++++.+|
T Consensus 245 AHLraaVLYfmDLSe~CGySva~QvkLfhsIKpL--FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS 322 (620)
T KOG1490|consen 245 AHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPL--FANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTS 322 (620)
T ss_pred HHhhhhheeeeechhhhCCCHHHHHHHHHHhHHH--hcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEec
Confidence 22236899999998654 566666667766443 35899999999999977655433332222222333457899999
Q ss_pred ecCCCChHHHHHHHHHHhhh
Q 030429 156 CKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 156 a~~~~~i~~l~~~l~~~~~~ 175 (177)
+.+.+|+-++.....+.+..
T Consensus 323 ~~~eegVm~Vrt~ACe~LLa 342 (620)
T KOG1490|consen 323 CVQEEGVMDVRTTACEALLA 342 (620)
T ss_pred ccchhceeeHHHHHHHHHHH
Confidence 99999999888777766554
No 283
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=5e-15 Score=112.73 Aligned_cols=159 Identities=19% Similarity=0.107 Sum_probs=110.2
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhc---------------------------------CCCCCCCCCccceeEE
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIAT---------------------------------GGYSEDMIPTVGFNMR 50 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~---------------------------------~~~~~~~~~t~~~~~~ 50 (177)
.....++..++.+++|...+|||||+.+++. ....+..+-|+.....
T Consensus 169 ~~q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~ 248 (603)
T KOG0458|consen 169 DEQSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTT 248 (603)
T ss_pred ccccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeE
Confidence 3445566789999999999999999999982 1122334445555666
Q ss_pred EEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCC---CHH--HHHHHHHHHHcCCCCCCCcEEEEeeCCC
Q 030429 51 KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD---SVP--IARSELHELLMKPSLSGIPLLVLGNKID 125 (177)
Q Consensus 51 ~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~iiv~nK~D 125 (177)
.++.....+.+.|.||+..|..-+......+|++++|+|++..+ .|+ ...+....++...+ -.-.+|++||+|
T Consensus 249 ~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD 326 (603)
T KOG0458|consen 249 WFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMD 326 (603)
T ss_pred EEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEEeeccc
Confidence 67778899999999999999887888888899999999997532 222 11222233333322 456889999999
Q ss_pred cccccC--HHH----HHHHh-CcccccCCceeEEEeeecCCCChHH
Q 030429 126 KSEALS--KQA----LVDQL-GLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 126 ~~~~~~--~~~----~~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
..++.+ .++ +...+ ....+....+.|++||+..|+|+-.
T Consensus 327 ~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 327 LVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred ccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 988643 222 23333 2334445667899999999998643
No 284
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.59 E-value=3.6e-14 Score=101.60 Aligned_cols=168 Identities=15% Similarity=0.191 Sum_probs=115.0
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeC----CEEEEEEecCCchhhHHhHHHHhcCC
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKG----NVTIKLWDLGGQRRFRTMWERYCRGV 81 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~ 81 (177)
+-..+..-+|+++|+.|+||||||.++-+. ......+..++.+..+..+ -.++.+|-+.|+.....++...+...
T Consensus 46 ~sklpsgk~VlvlGdn~sGKtsLi~klqg~-e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~at 124 (473)
T KOG3905|consen 46 RSKLPSGKNVLVLGDNGSGKTSLISKLQGS-ETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPAT 124 (473)
T ss_pred cccCCCCCeEEEEccCCCchhHHHHHhhcc-cccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhccccc
Confidence 334456789999999999999999999643 3556666666666665433 35788999999877777766655432
Q ss_pred ----CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCC---------------------------------------------
Q 030429 82 ----SAILYVVDAADRDSVPIARSELHELLMKPSL--------------------------------------------- 112 (177)
Q Consensus 82 ----d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------- 112 (177)
..+|++.|+++|+..-+..+.|..++.....
T Consensus 125 s~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~ 204 (473)
T KOG3905|consen 125 SLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSA 204 (473)
T ss_pred CccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcc
Confidence 5889999999996655443333332221100
Q ss_pred ----------------CCCcEEEEeeCCCcccccCH-----H---HHHHHhCcccccCCceeEEEeeecCCCChHHHHHH
Q 030429 113 ----------------SGIPLLVLGNKIDKSEALSK-----Q---ALVDQLGLESITDREVCCYMISCKDSINIDAVIDW 168 (177)
Q Consensus 113 ----------------~~~~~iiv~nK~D~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 168 (177)
-++|+++|.||||.....++ + .+.+.+-+.++...+...+++|+++..|++-|..+
T Consensus 205 de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKY 284 (473)
T KOG3905|consen 205 DEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKY 284 (473)
T ss_pred ccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHH
Confidence 36799999999998542211 1 12222222333445668999999999999999999
Q ss_pred HHHHhh
Q 030429 169 LIKHSK 174 (177)
Q Consensus 169 l~~~~~ 174 (177)
|++.+.
T Consensus 285 ivhr~y 290 (473)
T KOG3905|consen 285 IVHRSY 290 (473)
T ss_pred HHHHhc
Confidence 998753
No 285
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.59 E-value=1.5e-14 Score=106.97 Aligned_cols=157 Identities=15% Similarity=0.245 Sum_probs=82.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCC------CCC-ccceeEEEEEeCCEEEEEEecCCchhhHHhHHHH-----
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSED------MIP-TVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERY----- 77 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~------~~~-t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~----- 77 (177)
..+++|+|+|++|+|||||+|+|.+-+-... ... |.....+ ...+.-.+.+||+||..........|
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y-~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPY-PHPKFPNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEE-E-SS-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeC-CCCCCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 4578999999999999999999974221111 111 2222222 22333468999999954333223333
Q ss_pred hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc--cc-------cCHHH--------HHHHhC
Q 030429 78 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS--EA-------LSKQA--------LVDQLG 140 (177)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~--~~-------~~~~~--------~~~~~~ 140 (177)
+...|.+|++.+- .|....-++...+.. .++|+.+|.||+|.. +. ...++ ..+.+.
T Consensus 112 ~~~yD~fiii~s~----rf~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~ 184 (376)
T PF05049_consen 112 FYRYDFFIIISSE----RFTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQ 184 (376)
T ss_dssp GGG-SEEEEEESS----S--HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHH
T ss_pred ccccCEEEEEeCC----CCchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHH
Confidence 4568988887663 455555555554444 378999999999951 11 11112 233333
Q ss_pred cccccCCceeEEEeeecCC--CChHHHHHHHHHHhhhc
Q 030429 141 LESITDREVCCYMISCKDS--INIDAVIDWLIKHSKTA 176 (177)
Q Consensus 141 ~~~~~~~~~~~~~~Sa~~~--~~i~~l~~~l~~~~~~~ 176 (177)
.... ..-++|.+|+.+- .....|.+.|.+-+..+
T Consensus 185 k~gv--~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~ 220 (376)
T PF05049_consen 185 KAGV--SEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH 220 (376)
T ss_dssp CTT---SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred HcCC--CcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence 2222 2336888998764 56888999888876654
No 286
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.58 E-value=5e-15 Score=104.55 Aligned_cols=115 Identities=18% Similarity=0.103 Sum_probs=59.9
Q ss_pred EEEEEecCCchhhHHhHHHHh--------cCCCEEEEEEeCCCCCCHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 58 TIKLWDLGGQRRFRTMWERYC--------RGVSAILYVVDAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 58 ~~~~~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
.+.++|||||.++...+.... ...-++++++|+.-....... ...+...... ..-..|.+.|+||+|+.+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~-~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIM-LRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHH-HHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHH-hhCCCCEEEeeeccCccc
Confidence 688999999988766554432 334588999998654432222 2222221111 012689999999999987
Q ss_pred ccC--------------------HHHHHHHhCcccccCCce-eEEEeeecCCCChHHHHHHHHHHh
Q 030429 129 ALS--------------------KQALVDQLGLESITDREV-CCYMISCKDSINIDAVIDWLIKHS 173 (177)
Q Consensus 129 ~~~--------------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~ 173 (177)
... ...+.+.+.......... .++++|+++++|+++++..+.+.+
T Consensus 171 ~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 171 KYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred chhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 220 011111221111112233 799999999999999999988764
No 287
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.57 E-value=5e-14 Score=98.25 Aligned_cols=159 Identities=16% Similarity=0.108 Sum_probs=90.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCC----CCccceeEEEEEeCCEEEEEEecCCchh-------hHHhHHH----H
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDM----IPTVGFNMRKVTKGNVTIKLWDLGGQRR-------FRTMWER----Y 77 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~----~ 77 (177)
++|+++|.+||||||++|.+++....... ..|..........++..+.++||||-.+ ....+.. .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 58999999999999999999977654332 2355566666678999999999999211 1111111 2
Q ss_pred hcCCCEEEEEEeCCCCCC-HHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHH-----hCc--ccccCCce
Q 030429 78 CRGVSAILYVVDAADRDS-VPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQ-----LGL--ESITDREV 149 (177)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~-----~~~--~~~~~~~~ 149 (177)
..+.|++++|++++.... -.....++..+.... --..+++|.|..|.......++..+. +.. .....
T Consensus 81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~--~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~--- 155 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEE--IWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGG--- 155 (212)
T ss_dssp TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGG--GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTT---
T ss_pred cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHH--HHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCC---
Confidence 456899999999973211 112222333332221 12468999999998776554333331 110 11111
Q ss_pred eEEEeeec------CCCChHHHHHHHHHHhhhc
Q 030429 150 CCYMISCK------DSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 150 ~~~~~Sa~------~~~~i~~l~~~l~~~~~~~ 176 (177)
.++..+.+ +...+.+|++.+-+++.+.
T Consensus 156 R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 156 RYHVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp CEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 23333333 3456888998888877653
No 288
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=5.8e-14 Score=103.97 Aligned_cols=117 Identities=21% Similarity=0.283 Sum_probs=87.4
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhc--C------CC----------------CCCCCCccceeEEEEEeCCEEEEEE
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIAT--G------GY----------------SEDMIPTVGFNMRKVTKGNVTIKLW 62 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~--~------~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~ 62 (177)
-+..+.-..+|+-.|.+|||||...|+- + .+ ..+.+-+.......+.+++..+++.
T Consensus 7 ~Ev~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLL 86 (528)
T COG4108 7 QEVARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLL 86 (528)
T ss_pred HHHhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEecc
Confidence 3456667789999999999999999971 0 00 1111123334455577889999999
Q ss_pred ecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 63 DLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 63 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
||||+++|..-....+..+|.+++|+|+.. ..+.....+.+++.. +++|++-++||.|...
T Consensus 87 DTPGHeDFSEDTYRtLtAvDsAvMVIDaAK--GiE~qT~KLfeVcrl---R~iPI~TFiNKlDR~~ 147 (528)
T COG4108 87 DTPGHEDFSEDTYRTLTAVDSAVMVIDAAK--GIEPQTLKLFEVCRL---RDIPIFTFINKLDREG 147 (528)
T ss_pred CCCCccccchhHHHHHHhhheeeEEEeccc--CccHHHHHHHHHHhh---cCCceEEEeecccccc
Confidence 999999999888888899999999999944 455555555555444 7899999999999754
No 289
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.56 E-value=4e-14 Score=114.35 Aligned_cols=114 Identities=21% Similarity=0.235 Sum_probs=79.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC---------------CCCCC---CCCccceeEE----EEEeCCEEEEEEecCCc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATG---------------GYSED---MIPTVGFNMR----KVTKGNVTIKLWDLGGQ 67 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~---------------~~~~~---~~~t~~~~~~----~~~~~~~~~~~~D~~g~ 67 (177)
.+..||+++|+.++|||||+++|+.. .+... ...|+..... ..+.+++.+++|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 34579999999999999999999742 11110 1123332221 24567799999999999
Q ss_pred hhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
.+|......++..+|++++|+|+.+...... ...+..... .+.|.++++||+|...
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~~----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQALK----ENVKPVLFINKVDRLI 152 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHHH----cCCCEEEEEEChhccc
Confidence 9998888888999999999999976432222 222222222 3578889999999864
No 290
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.54 E-value=3.1e-13 Score=93.23 Aligned_cols=101 Identities=22% Similarity=0.282 Sum_probs=62.8
Q ss_pred EEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcE--EEEeeCCCcccc--cCH
Q 030429 57 VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPL--LVLGNKIDKSEA--LSK 132 (177)
Q Consensus 57 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--iiv~nK~D~~~~--~~~ 132 (177)
.+..++++.|..-....... + +|.++.|+|+.+.+.... ... ..+.. ++++||+|+.+. ...
T Consensus 92 ~D~iiIEt~G~~l~~~~~~~-l--~~~~i~vvD~~~~~~~~~---~~~--------~qi~~ad~~~~~k~d~~~~~~~~~ 157 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSPE-L--ADLTIFVIDVAAGDKIPR---KGG--------PGITRSDLLVINKIDLAPMVGADL 157 (199)
T ss_pred CCEEEEECCCCCcccccchh-h--hCcEEEEEEcchhhhhhh---hhH--------hHhhhccEEEEEhhhccccccccH
Confidence 45556677773211111111 1 578999999976544221 100 12233 889999999853 334
Q ss_pred HHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 133 QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
+...+.+... +...+++++||++|.|++++++++.+.+.
T Consensus 158 ~~~~~~~~~~---~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 158 GVMERDAKKM---RGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4444444322 33568999999999999999999998764
No 291
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=2.8e-13 Score=100.56 Aligned_cols=155 Identities=16% Similarity=0.106 Sum_probs=115.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-----CCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYS-----EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~-----~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
.|+..|.--.|||||++.+.+.... ...+.|+.+.+.....++....++|.||++++-..+...+...|.+++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 4778899999999999999865432 23445777777777778889999999999999888888888999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDW 168 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 168 (177)
|+++.- ......-..++... .....++|+||+|..++...++..+++..... .+..++|.+|+.+|.||++|.+.
T Consensus 82 ~~deGl--~~qtgEhL~iLdll--gi~~giivltk~D~~d~~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g~GI~~Lk~~ 156 (447)
T COG3276 82 AADEGL--MAQTGEHLLILDLL--GIKNGIIVLTKADRVDEARIEQKIKQILADLS-LANAKIFKTSAKTGRGIEELKNE 156 (447)
T ss_pred eCccCc--chhhHHHHHHHHhc--CCCceEEEEeccccccHHHHHHHHHHHHhhcc-cccccccccccccCCCHHHHHHH
Confidence 996532 22222222222322 13456899999999987655555555432222 55667899999999999999999
Q ss_pred HHHHh
Q 030429 169 LIKHS 173 (177)
Q Consensus 169 l~~~~ 173 (177)
|.+.+
T Consensus 157 l~~L~ 161 (447)
T COG3276 157 LIDLL 161 (447)
T ss_pred HHHhh
Confidence 99987
No 292
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.52 E-value=1.9e-13 Score=98.81 Aligned_cols=151 Identities=16% Similarity=0.101 Sum_probs=99.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCC-----------------------------------CCCCCCCccceeEEEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGG-----------------------------------YSEDMIPTVGFNMRKVT 53 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~-----------------------------------~~~~~~~t~~~~~~~~~ 53 (177)
.+..++++-+|...-||||||-||+... .++..+-|+..-++.+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 3567899999999999999999998321 01122335555555566
Q ss_pred eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--
Q 030429 54 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-- 131 (177)
Q Consensus 54 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-- 131 (177)
.+...|.+.||||+++|..-+.....-||++|+++|+ +....+....=..+.... .-..+++++||+|+.+..+
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDA--R~Gvl~QTrRHs~I~sLL--GIrhvvvAVNKmDLvdy~e~~ 158 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDA--RKGVLEQTRRHSFIASLL--GIRHVVVAVNKMDLVDYSEEV 158 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEec--chhhHHHhHHHHHHHHHh--CCcEEEEEEeeecccccCHHH
Confidence 7788999999999999987776667779999999999 433433322211221111 1345788899999987532
Q ss_pred HHHHHHHhCccc--ccCCceeEEEeeecCCCChH
Q 030429 132 KQALVDQLGLES--ITDREVCCYMISCKDSINID 163 (177)
Q Consensus 132 ~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~i~ 163 (177)
.+++.+.+.... .......++|+||..|.|+-
T Consensus 159 F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 159 FEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 233333222111 11233479999999998864
No 293
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=4e-13 Score=97.10 Aligned_cols=160 Identities=18% Similarity=0.196 Sum_probs=101.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCC----CCCCCCC-----ccceeEEEE---------EeCCEEEEEEecCCchhhH
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGG----YSEDMIP-----TVGFNMRKV---------TKGNVTIKLWDLGGQRRFR 71 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~----~~~~~~~-----t~~~~~~~~---------~~~~~~~~~~D~~g~~~~~ 71 (177)
+-+++++++|...||||||.+++..-. |.....+ |....+..+ +.+..++.++|+||+...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 456999999999999999999997422 2222222 222111111 2345788999999998777
Q ss_pred HhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH----HHHHHHhCc--ccc-
Q 030429 72 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK----QALVDQLGL--ESI- 144 (177)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~----~~~~~~~~~--~~~- 144 (177)
.......+-.|..++|+|+..........-.+..- ......++|+||+|...+... ++....+++ ...
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~-----~~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~ 159 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGE-----LLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTG 159 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhhhhh-----hhccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcC
Confidence 66666667789999999996543222222222111 123457888999997665332 222222221 122
Q ss_pred cCCceeEEEeeecCC----CChHHHHHHHHHHhh
Q 030429 145 TDREVCCYMISCKDS----INIDAVIDWLIKHSK 174 (177)
Q Consensus 145 ~~~~~~~~~~Sa~~~----~~i~~l~~~l~~~~~ 174 (177)
...+.|++++||++| +++.+|.+.|.+.+.
T Consensus 160 f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if 193 (522)
T KOG0461|consen 160 FDGNSPIVEVSAADGYFKEEMIQELKEALESRIF 193 (522)
T ss_pred cCCCCceeEEecCCCccchhHHHHHHHHHHHhhc
Confidence 234579999999999 889999888887764
No 294
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.51 E-value=3.3e-13 Score=100.80 Aligned_cols=157 Identities=22% Similarity=0.342 Sum_probs=107.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC--CCCC-------CCC-----ccceeEE----EEEeCCEEEEEEecCCchhhHHhH
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGG--YSED-------MIP-----TVGFNMR----KVTKGNVTIKLWDLGGQRRFRTMW 74 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~--~~~~-------~~~-----t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~ 74 (177)
-+|+|+-+...|||||+..|+..+ |... ..+ .-+++.. .+.++++.++++||||+.+|-...
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV 85 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV 85 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence 489999999999999999998432 1110 111 1122222 256788999999999999998888
Q ss_pred HHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCc---ccc--cCCce
Q 030429 75 ERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGL---ESI--TDREV 149 (177)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~---~~~--~~~~~ 149 (177)
...+.=.|.+++++|+.+.. ++..+..+...+.. +.+-|+|+||+|.+.....+-+.+.+.+ ... .+-.+
T Consensus 86 ERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~~----gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF 160 (603)
T COG1217 86 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALAL----GLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF 160 (603)
T ss_pred hhhhhhcceEEEEEEcccCC-CCchhhhHHHHHHc----CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC
Confidence 88888899999999997653 44445555555554 5566788999999875332222222211 111 12346
Q ss_pred eEEEeeecCC----------CChHHHHHHHHHHhh
Q 030429 150 CCYMISCKDS----------INIDAVIDWLIKHSK 174 (177)
Q Consensus 150 ~~~~~Sa~~~----------~~i~~l~~~l~~~~~ 174 (177)
|++..|++.| .++.-||+.|.+.+.
T Consensus 161 PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp 195 (603)
T COG1217 161 PIVYASARNGTASLDPEDEADDMAPLFETILDHVP 195 (603)
T ss_pred cEEEeeccCceeccCccccccchhHHHHHHHHhCC
Confidence 8999999876 468889999988764
No 295
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.51 E-value=6.7e-13 Score=97.19 Aligned_cols=157 Identities=15% Similarity=0.095 Sum_probs=92.4
Q ss_pred ecccccceeEEEEEcCCCCCHHHHHHHHhcC----CC-------CCCCCC-----------------ccceeEEEE----
Q 030429 5 ISLFFKQEMELSLIGLQNAGKTSLVNTIATG----GY-------SEDMIP-----------------TVGFNMRKV---- 52 (177)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~----~~-------~~~~~~-----------------t~~~~~~~~---- 52 (177)
..........|+++|++|+|||||++.+... +. ...... ..+......
T Consensus 27 ~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (300)
T TIGR00750 27 IMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRG 106 (300)
T ss_pred CCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCccc
Confidence 3445567789999999999999999998631 00 000000 001111111
Q ss_pred ----------------EeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCc
Q 030429 53 ----------------TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP 116 (177)
Q Consensus 53 ----------------~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (177)
+..++++.++||+|...... ..+..+|.++++... .+.+++......+ ..+|
T Consensus 107 ~~~~~~~~~~~~~~~l~~~g~D~viidT~G~~~~e~---~i~~~aD~i~vv~~~---~~~~el~~~~~~l------~~~~ 174 (300)
T TIGR00750 107 HLGGLSQATRELILLLDAAGYDVIIVETVGVGQSEV---DIANMADTFVVVTIP---GTGDDLQGIKAGL------MEIA 174 (300)
T ss_pred cccchhHHHHHHHHHHHhCCCCEEEEeCCCCchhhh---HHHHhhceEEEEecC---CccHHHHHHHHHH------hhhc
Confidence 12367889999998543221 245567888887543 3334443333322 2567
Q ss_pred EEEEeeCCCcccccCHHHHHH----HhCccccc--CCceeEEEeeecCCCChHHHHHHHHHHh
Q 030429 117 LLVLGNKIDKSEALSKQALVD----QLGLESIT--DREVCCYMISCKDSINIDAVIDWLIKHS 173 (177)
Q Consensus 117 ~iiv~nK~D~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 173 (177)
.++|+||+|+........... .+...... ....+++++||+++.|++++++++.+..
T Consensus 175 ~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 175 DIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred cEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 899999999976543221111 11110000 1113589999999999999999998864
No 296
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.51 E-value=8.2e-14 Score=105.52 Aligned_cols=132 Identities=21% Similarity=0.327 Sum_probs=96.9
Q ss_pred CCccceeEEEEEe-CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCC----------CHHHHHHHHHHHHcCC
Q 030429 42 IPTVGFNMRKVTK-GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD----------SVPIARSELHELLMKP 110 (177)
Q Consensus 42 ~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------~~~~~~~~~~~~~~~~ 110 (177)
..|.|+....+.. ++..+.++|++|++..+..|..++.+.+++++|+++++.+ .+.+....+..++...
T Consensus 220 ~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~ 299 (389)
T PF00503_consen 220 VKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNP 299 (389)
T ss_dssp ---SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSG
T ss_pred CCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCc
Confidence 3577788778888 9999999999999999999999999999999999997522 2666678888888876
Q ss_pred CCCCCcEEEEeeCCCcccc--------------------cCHHHHHHHhCc----ccccC---CceeEEEeeecCCCChH
Q 030429 111 SLSGIPLLVLGNKIDKSEA--------------------LSKQALVDQLGL----ESITD---REVCCYMISCKDSINID 163 (177)
Q Consensus 111 ~~~~~~~iiv~nK~D~~~~--------------------~~~~~~~~~~~~----~~~~~---~~~~~~~~Sa~~~~~i~ 163 (177)
...+.|+++++||.|+... ...+...+.+.. ..... +.+.++.++|.+..+++
T Consensus 300 ~~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~ 379 (389)
T PF00503_consen 300 WFKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIR 379 (389)
T ss_dssp GGTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHH
T ss_pred ccccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHH
Confidence 7778999999999996431 122333332221 11111 55567789999999999
Q ss_pred HHHHHHHHHh
Q 030429 164 AVIDWLIKHS 173 (177)
Q Consensus 164 ~l~~~l~~~~ 173 (177)
.+|+.+.+.+
T Consensus 380 ~v~~~v~~~i 389 (389)
T PF00503_consen 380 KVFNAVKDII 389 (389)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhcCcC
Confidence 9999988754
No 297
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.50 E-value=5.9e-13 Score=107.91 Aligned_cols=113 Identities=25% Similarity=0.269 Sum_probs=76.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCC--CC---------C-------CCCccceeEEEE----EeCCEEEEEEecCCc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGY--SE---------D-------MIPTVGFNMRKV----TKGNVTIKLWDLGGQ 67 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~---------~-------~~~t~~~~~~~~----~~~~~~~~~~D~~g~ 67 (177)
.+.-+|+++|+.++|||||+++++...- .. + ..-|+......+ ...+..++++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 3446899999999999999999974211 00 0 001121111111 224788999999999
Q ss_pred hhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030429 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127 (177)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 127 (177)
.+|.......+..+|++++|+|+....... ....+...... +.|.++++||+|..
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~~----~~~~iv~iNK~D~~ 152 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALRE----RVKPVLFINKVDRL 152 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHHc----CCCeEEEEECchhh
Confidence 999888888899999999999987653222 22233332222 46789999999976
No 298
>PTZ00258 GTP-binding protein; Provisional
Probab=99.50 E-value=1.3e-12 Score=97.82 Aligned_cols=82 Identities=21% Similarity=0.306 Sum_probs=56.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEeC-----------------CEEEEEEecCCchhh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKG-----------------NVTIKLWDLGGQRRF 70 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~-----------------~~~~~~~D~~g~~~~ 70 (177)
...++|+++|.||||||||+|++.+...... ...|.......+... ..++.++|+||-...
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 4568999999999999999999986654332 223444444444332 345899999994321
Q ss_pred -------HHhHHHHhcCCCEEEEEEeCC
Q 030429 71 -------RTMWERYCRGVSAILYVVDAA 91 (177)
Q Consensus 71 -------~~~~~~~~~~~d~~i~v~d~~ 91 (177)
.......++.+|++++|+|+.
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 112233577899999999984
No 299
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.49 E-value=3.8e-13 Score=110.29 Aligned_cols=114 Identities=21% Similarity=0.189 Sum_probs=79.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCC--C---------C-------CCCccceeEEEEEe----------------
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYS--E---------D-------MIPTVGFNMRKVTK---------------- 54 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~---------~-------~~~t~~~~~~~~~~---------------- 54 (177)
..+-.+|+++|+.++|||||+++|+...-. . + ...|+......+..
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 445679999999999999999999843210 0 0 11111111111211
Q ss_pred CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030429 55 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127 (177)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 127 (177)
.+..++++||||+.+|.......+..+|++++|+|+...-.... ...+..... .++|+++++||+|..
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHH----CCCCEEEEEECCccc
Confidence 36788999999999999888888999999999999976543332 223333333 378999999999987
No 300
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=9.5e-13 Score=93.21 Aligned_cols=169 Identities=18% Similarity=0.129 Sum_probs=109.4
Q ss_pred CceeecccccceeEEEEEcCCCCCHHHHHHHHhcC------C----C--------CCCCCCccceeEEEEEeCCEEEEEE
Q 030429 1 MYLHISLFFKQEMELSLIGLQNAGKTSLVNTIATG------G----Y--------SEDMIPTVGFNMRKVTKGNVTIKLW 62 (177)
Q Consensus 1 m~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~------~----~--------~~~~~~t~~~~~~~~~~~~~~~~~~ 62 (177)
|.+...--.+..+||+.+|.-..|||||..++..- . + .....-|+......++..+..+..+
T Consensus 1 mak~kf~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahV 80 (394)
T COG0050 1 MAKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHV 80 (394)
T ss_pred CchhhhcCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEec
Confidence 44444455677899999999999999998888620 0 1 1112223434444466678888999
Q ss_pred ecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCcccccCH-----HHHH
Q 030429 63 DLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALSK-----QALV 136 (177)
Q Consensus 63 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~-----~~~~ 136 (177)
|+||+.+|-.-+.....++|.+|+|+.++|...-+. +..+.-..+ -..| +++++||+|+.++.+. .++.
T Consensus 81 DcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqT-rEHiLlarq----vGvp~ivvflnK~Dmvdd~ellelVemEvr 155 (394)
T COG0050 81 DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQ----VGVPYIVVFLNKVDMVDDEELLELVEMEVR 155 (394)
T ss_pred cCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcc-hhhhhhhhh----cCCcEEEEEEecccccCcHHHHHHHHHHHH
Confidence 999999998777777778999999999988543322 222222212 2454 6777899999885443 3444
Q ss_pred HHhCcccccCCceeEEEeeecCC-C-------ChHHHHHHHHHHhh
Q 030429 137 DQLGLESITDREVCCYMISCKDS-I-------NIDAVIDWLIKHSK 174 (177)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~Sa~~~-~-------~i~~l~~~l~~~~~ 174 (177)
+-+....+.....|++.-||..- + .|.+|++.+.+++.
T Consensus 156 eLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip 201 (394)
T COG0050 156 ELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIP 201 (394)
T ss_pred HHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCC
Confidence 44544555555667887777532 2 35667766666543
No 301
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.49 E-value=1e-13 Score=96.45 Aligned_cols=57 Identities=19% Similarity=0.184 Sum_probs=40.8
Q ss_pred CCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHHHh
Q 030429 114 GIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 173 (177)
Q Consensus 114 ~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 173 (177)
..|.++++||+|+.+.. ...+..+.+... .+..+++++||+++.|++++++++.+..
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~---~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKKI---NPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45789999999997532 223333333221 2346899999999999999999998754
No 302
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.49 E-value=1.6e-13 Score=96.13 Aligned_cols=152 Identities=15% Similarity=0.190 Sum_probs=90.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC----------------------CCCCC------CCCccceeEEEEE--------
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATG----------------------GYSED------MIPTVGFNMRKVT-------- 53 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~----------------------~~~~~------~~~t~~~~~~~~~-------- 53 (177)
.+...|+|.|+||+|||||++.|... ..-.+ .....+.-.+...
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 35689999999999999999999720 00000 0011122222221
Q ss_pred ------------eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEe
Q 030429 54 ------------KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLG 121 (177)
Q Consensus 54 ------------~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~ 121 (177)
..++++.+++|.|-.+..... ..-+|.+++|......+..+.++.-+.++ .=++|+
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I---~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi---------aDi~vV 174 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEVDI---ADMADTVVLVLVPGLGDEIQAIKAGIMEI---------ADIFVV 174 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHH---HTTSSEEEEEEESSTCCCCCTB-TTHHHH----------SEEEE
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHH---HHhcCeEEEEecCCCccHHHHHhhhhhhh---------ccEEEE
Confidence 135789999999865554333 44489999999887666666555544444 337999
Q ss_pred eCCCcccccC-HHHHHHHhCcccccCC--ceeEEEeeecCCCChHHHHHHHHHHh
Q 030429 122 NKIDKSEALS-KQALVDQLGLESITDR--EVCCYMISCKDSINIDAVIDWLIKHS 173 (177)
Q Consensus 122 nK~D~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~l~~~~ 173 (177)
||+|....+. ..++...+........ ..+++.+||.++.|+++|++.|.+.-
T Consensus 175 NKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 175 NKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp E--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred eCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 9999655432 2333333322211111 24899999999999999999998753
No 303
>PTZ00416 elongation factor 2; Provisional
Probab=99.49 E-value=4.7e-13 Score=109.58 Aligned_cols=113 Identities=23% Similarity=0.225 Sum_probs=78.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCC--CC---------C-------CCCccceeEEEEEeC----------CEEEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGY--SE---------D-------MIPTVGFNMRKVTKG----------NVTIKL 61 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~---------~-------~~~t~~~~~~~~~~~----------~~~~~~ 61 (177)
++..+|+++|+.++|||||+++|+...- .. + ...|+.......... +..+++
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 4456999999999999999999985211 00 0 001111111112221 577999
Q ss_pred EecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030429 62 WDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127 (177)
Q Consensus 62 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 127 (177)
+||||+.+|.......+..+|++++|+|+.+.-.... ...+..+.. .++|+++++||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHH----cCCCEEEEEEChhhh
Confidence 9999999998888888999999999999977533332 333444433 368999999999987
No 304
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=3.2e-13 Score=105.59 Aligned_cols=158 Identities=18% Similarity=0.195 Sum_probs=103.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC----CccceeEEEEE----------------eCCEEEEEEecCCchhhH
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMI----PTVGFNMRKVT----------------KGNVTIKLWDLGGQRRFR 71 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~----~t~~~~~~~~~----------------~~~~~~~~~D~~g~~~~~ 71 (177)
..-+||+|+..+|||-|+..+.+.++....- +.++-++.... .+-.-+.++||||++.|.
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt 554 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT 554 (1064)
T ss_pred CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence 4568999999999999999998655433322 22222222211 122346788999999999
Q ss_pred HhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC------H------------H
Q 030429 72 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS------K------------Q 133 (177)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~------~------------~ 133 (177)
++......-||.+|+|+|+... +.......+...+.++.|+|+++||+|....+. . .
T Consensus 555 nlRsrgsslC~~aIlvvdImhG-----lepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~ 629 (1064)
T KOG1144|consen 555 NLRSRGSSLCDLAILVVDIMHG-----LEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQN 629 (1064)
T ss_pred hhhhccccccceEEEEeehhcc-----CCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHH
Confidence 9988888899999999999543 211112222223336899999999999754211 0 1
Q ss_pred HHHHHh----------Cc---cccc----CCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 134 ALVDQL----------GL---ESIT----DREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 134 ~~~~~~----------~~---~~~~----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
++..++ ++ .++. ...+.++++||..|+||.+|+-+|++...
T Consensus 630 EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 630 EFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred HHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 111111 11 1111 13578899999999999999999988654
No 305
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.47 E-value=8.9e-13 Score=100.90 Aligned_cols=165 Identities=18% Similarity=0.231 Sum_probs=106.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeC----CEEEEEEecCCchhhHHhHHHHhcC----C
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKG----NVTIKLWDLGGQRRFRTMWERYCRG----V 81 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~----~ 81 (177)
...-.|+|+|..++|||||+.+|.+. .........++.+..+..+ -.++++|.+.|...+..++...+.. -
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~-e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~ 101 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGI-EDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN 101 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhcc-CCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence 34568999999999999999998643 2222333344444444322 2578999999877777777665553 2
Q ss_pred CEEEEEEeCCCCCCHH-HHHHHHHHH----------------------------HcC---C-----------C-------
Q 030429 82 SAILYVVDAADRDSVP-IARSELHEL----------------------------LMK---P-----------S------- 111 (177)
Q Consensus 82 d~~i~v~d~~~~~~~~-~~~~~~~~~----------------------------~~~---~-----------~------- 111 (177)
-++++|+|++.|+.+- .+..|+..+ .+. . .
T Consensus 102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~ 181 (472)
T PF05783_consen 102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDES 181 (472)
T ss_pred eEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccc
Confidence 5899999999886543 222222210 000 0 0
Q ss_pred ------------CCCCcEEEEeeCCCcccccCH--------HHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHH
Q 030429 112 ------------LSGIPLLVLGNKIDKSEALSK--------QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171 (177)
Q Consensus 112 ------------~~~~~~iiv~nK~D~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 171 (177)
.-++|++||.+|+|.....+. -.+..++-+......++..+.||++...+++.|...|.+
T Consensus 182 ~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h 261 (472)
T PF05783_consen 182 VLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILH 261 (472)
T ss_pred ccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHH
Confidence 014799999999997542111 112222223334445678999999999999999999988
Q ss_pred Hhhh
Q 030429 172 HSKT 175 (177)
Q Consensus 172 ~~~~ 175 (177)
.+..
T Consensus 262 ~l~~ 265 (472)
T PF05783_consen 262 RLYG 265 (472)
T ss_pred Hhcc
Confidence 7754
No 306
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.44 E-value=2e-12 Score=89.76 Aligned_cols=155 Identities=23% Similarity=0.280 Sum_probs=101.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEeCCEEEEEEecCCchhhHHhH-------HHHhcC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMW-------ERYCRG 80 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-------~~~~~~ 80 (177)
.-..+|+++|.|.+|||||+..+........ ...|.......+.+++..+++.|.||.-...+.- ....+-
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeec
Confidence 3458999999999999999999974332222 2223333334467888999999999954332221 223566
Q ss_pred CCEEEEEEeCCCCCCHH-HHHHHHHHHHcCC-------------------------------------------------
Q 030429 81 VSAILYVVDAADRDSVP-IARSELHELLMKP------------------------------------------------- 110 (177)
Q Consensus 81 ~d~~i~v~d~~~~~~~~-~~~~~~~~~~~~~------------------------------------------------- 110 (177)
+|.+++|.|++..+.-. .+...+..+-...
T Consensus 140 aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~ 219 (364)
T KOG1486|consen 140 ADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLF 219 (364)
T ss_pred ccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEE
Confidence 89999999997533211 1122222111000
Q ss_pred ---------------CCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 111 ---------------SLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 111 ---------------~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
....++++.|.||+|...-++.+.+.++.+ -+-+|+.-..|++.+++.+.+.+.
T Consensus 220 ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs~eevdrlAr~Pn----------svViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 220 REDCTVDDFIDVIEGNRVYIKCLYVYNKIDQVSIEEVDRLARQPN----------SVVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred ecCCChHHHHHHHhccceEEEEEEEeeccceecHHHHHHHhcCCC----------cEEEEeccccCHHHHHHHHHHHhc
Confidence 003468999999999988766655555443 456899999999999999998765
No 307
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.42 E-value=6.3e-12 Score=84.57 Aligned_cols=63 Identities=19% Similarity=0.162 Sum_probs=42.8
Q ss_pred EEEEEecCCchh----hHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 030429 58 TIKLWDLGGQRR----FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 124 (177)
Q Consensus 58 ~~~~~D~~g~~~----~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~ 124 (177)
.+.++|+||... ....+..+++.+|++++|.+++....-.....+.... .. ....+++|.||+
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~-~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQML-DP---DKSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHH-TT---TCSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHh-cC---CCCeEEEEEcCC
Confidence 478999999532 2356777889999999999998865544444333333 33 244589999985
No 308
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.41 E-value=1.1e-12 Score=93.16 Aligned_cols=108 Identities=17% Similarity=0.145 Sum_probs=69.9
Q ss_pred CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC-HH
Q 030429 55 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQ 133 (177)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~ 133 (177)
.++++.+++|.|-.+....... -+|.+++|.-..-.+..+.++.-+.++ -=++|+||.|....+. ..
T Consensus 142 aG~DvIIVETVGvGQsev~I~~---~aDt~~~v~~pg~GD~~Q~iK~GimEi---------aDi~vINKaD~~~A~~a~r 209 (323)
T COG1703 142 AGYDVIIVETVGVGQSEVDIAN---MADTFLVVMIPGAGDDLQGIKAGIMEI---------ADIIVINKADRKGAEKAAR 209 (323)
T ss_pred cCCCEEEEEecCCCcchhHHhh---hcceEEEEecCCCCcHHHHHHhhhhhh---------hheeeEeccChhhHHHHHH
Confidence 3578899999986666543333 388888888765555555555444444 2379999999654322 22
Q ss_pred HHHHHhCccc--ccC--CceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 134 ALVDQLGLES--ITD--REVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 134 ~~~~~~~~~~--~~~--~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
++...+.... ... -..+++.+||..|+|+++|++.+.+...
T Consensus 210 ~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 210 ELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred HHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 3333333221 111 1347899999999999999999988654
No 309
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.38 E-value=2e-11 Score=90.55 Aligned_cols=79 Identities=27% Similarity=0.358 Sum_probs=53.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEeCC-----------------EEEEEEecCCchhh---
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGN-----------------VTIKLWDLGGQRRF--- 70 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~~~--- 70 (177)
++|+++|.|++|||||+|++++...... ...|.......+...+ .++.++|+||-...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 6899999999999999999997663222 3334444444433222 35899999994321
Q ss_pred -HH---hHHHHhcCCCEEEEEEeCC
Q 030429 71 -RT---MWERYCRGVSAILYVVDAA 91 (177)
Q Consensus 71 -~~---~~~~~~~~~d~~i~v~d~~ 91 (177)
.. .....++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 11 2223467899999999985
No 310
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.37 E-value=1.3e-12 Score=83.38 Aligned_cols=114 Identities=20% Similarity=0.176 Sum_probs=76.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMI-PTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAA 91 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 91 (177)
+|++++|..|+|||+|+.++....+...+. ++.+ +........+.++.+++||+.+
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~ 57 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVD 57 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEcc
Confidence 489999999999999999998666654433 3333 2222234566789999999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 92 DRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
+..+++.. |...+... ...+.|.++++||.|+.+... +.+... ..++++|++++.|+.
T Consensus 58 ~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~~~---~~~~~~--------~~~~~~s~~~~~~~~ 115 (124)
T smart00010 58 DRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEERQ---VATEEG--------LEFAETSAKTPEEGE 115 (124)
T ss_pred CHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhhCc---CCHHHH--------HHHHHHhCCCcchhh
Confidence 88887655 55444433 234688999999999844221 111111 135678899998874
No 311
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.37 E-value=2.1e-11 Score=93.41 Aligned_cols=157 Identities=18% Similarity=0.190 Sum_probs=106.7
Q ss_pred ecccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccc----eeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcC
Q 030429 5 ISLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG----FNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRG 80 (177)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 80 (177)
..-..++-++..++|+.++|||.++++++++.+......+.. ++...+......+.+-|.+-. ........- ..
T Consensus 418 ~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~ 495 (625)
T KOG1707|consen 418 KKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AA 495 (625)
T ss_pred cccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ce
Confidence 344556779999999999999999999998877664333222 222233334455666677653 111111111 56
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc-----CHHHHHHHhCcccccCCceeEEEee
Q 030429 81 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL-----SKQALVDQLGLESITDREVCCYMIS 155 (177)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~S 155 (177)
||+++++||.+++.++..+...+...... ...|+++|++|+|+.+.. ...+++.+++... -...|
T Consensus 496 cDv~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~-------P~~~S 565 (625)
T KOG1707|consen 496 CDVACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPP-------PIHIS 565 (625)
T ss_pred eeeEEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCCC-------Ceeec
Confidence 99999999999999999887777665444 579999999999997643 2366666666542 34456
Q ss_pred ecCCCChHHHHHHHHHHhh
Q 030429 156 CKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 156 a~~~~~i~~l~~~l~~~~~ 174 (177)
.+.... .++|..|..++.
T Consensus 566 ~~~~~s-~~lf~kL~~~A~ 583 (625)
T KOG1707|consen 566 SKTLSS-NELFIKLATMAQ 583 (625)
T ss_pred cCCCCC-chHHHHHHHhhh
Confidence 554333 899999988764
No 312
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=2.2e-12 Score=102.75 Aligned_cols=127 Identities=22% Similarity=0.236 Sum_probs=89.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcC--------CCC------------CCCCCccceeEEEEEeCC-EEEEEEecCCc
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATG--------GYS------------EDMIPTVGFNMRKVTKGN-VTIKLWDLGGQ 67 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~--------~~~------------~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~ 67 (177)
..+.-||+++|+-.+|||||..+++-. ... ....-|+.........++ +.++++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 566789999999999999999999821 011 011123333333455674 99999999999
Q ss_pred hhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC---HHHHHHHhC
Q 030429 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS---KQALVDQLG 140 (177)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~---~~~~~~~~~ 140 (177)
-+|.......++-+|++++|+|+...-... ....|..... .++|.++++||+|....+. .+++...+.
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~Q-TEtv~rqa~~----~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~ 157 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQ-TETVWRQADK----YGVPRILFVNKMDRLGADFYLVVEQLKERLG 157 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeec-HHHHHHHHhh----cCCCeEEEEECccccccChhhhHHHHHHHhC
Confidence 999999999999999999999996643222 2333344433 4899999999999865432 344444443
No 313
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.37 E-value=1.4e-12 Score=93.69 Aligned_cols=57 Identities=21% Similarity=0.273 Sum_probs=41.6
Q ss_pred CCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHHHh
Q 030429 114 GIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 173 (177)
Q Consensus 114 ~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 173 (177)
..+-++|+||+|+.+.. +.+...+.+.. ..+..+++++|+++|+|++++.++|.+..
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~---lnp~a~I~~vSA~tGeGld~L~~~L~~~~ 288 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACARE---VNPEIEIILISATSGEGMDQWLNWLETQR 288 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHh---hCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 35679999999997632 33444444432 23456899999999999999999998753
No 314
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.37 E-value=3.5e-11 Score=94.32 Aligned_cols=118 Identities=14% Similarity=0.119 Sum_probs=74.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC-CCC--CCccceeEEEEEeCCEEEEEEecCCchhhH-------Hh---HHHH
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYS-EDM--IPTVGFNMRKVTKGNVTIKLWDLGGQRRFR-------TM---WERY 77 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~--~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~---~~~~ 77 (177)
..++|+++|.+|+||||++|++++.... ... ..|..........++..+.++||||-.... .. ...+
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~ 196 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF 196 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence 4578999999999999999999976532 221 233333333334567889999999954321 11 1123
Q ss_pred hc--CCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCC-CCcEEEEeeCCCccc
Q 030429 78 CR--GVSAILYVVDAADRDSVPIARSELHELLMKPSLS-GIPLLVLGNKIDKSE 128 (177)
Q Consensus 78 ~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~nK~D~~~ 128 (177)
+. ..|++++|..++......+....+..+...++.. -..+|||.|+.|..+
T Consensus 197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 33 4799999998764433323334444443333311 146899999999875
No 315
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.37 E-value=3.2e-12 Score=90.92 Aligned_cols=95 Identities=18% Similarity=0.130 Sum_probs=72.3
Q ss_pred hhhHHhHHHHhcCCCEEEEEEeCCCCC-CHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHH-HHHHHhCccccc
Q 030429 68 RRFRTMWERYCRGVSAILYVVDAADRD-SVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ-ALVDQLGLESIT 145 (177)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~-~~~~~~~~~~~~ 145 (177)
+++..+.+.++.++|.+++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+..... +..+.+.
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~~----- 94 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIYR----- 94 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHHH-----
Confidence 566666777899999999999999887 88888888875533 478999999999997543222 2222222
Q ss_pred CCceeEEEeeecCCCChHHHHHHHHH
Q 030429 146 DREVCCYMISCKDSINIDAVIDWLIK 171 (177)
Q Consensus 146 ~~~~~~~~~Sa~~~~~i~~l~~~l~~ 171 (177)
..+.+++++||++|.|++++++.+..
T Consensus 95 ~~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 95 NIGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HCCCeEEEEecCCchhHHHHHhhhcC
Confidence 13357999999999999999998764
No 316
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.37 E-value=3.2e-11 Score=87.26 Aligned_cols=117 Identities=18% Similarity=0.281 Sum_probs=66.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCC----------CCccceeEEE--EEeC--CEEEEEEecCCch---------
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDM----------IPTVGFNMRK--VTKG--NVTIKLWDLGGQR--------- 68 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~----------~~t~~~~~~~--~~~~--~~~~~~~D~~g~~--------- 68 (177)
.++|+++|++|+|||||+|.|++....... ..+..+.... +..+ .+.+.++||||-.
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 589999999999999999999975543321 1122222222 2223 3678899999921
Q ss_pred ---------hhHHhHHHHh---------cCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc
Q 030429 69 ---------RFRTMWERYC---------RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 130 (177)
Q Consensus 69 ---------~~~~~~~~~~---------~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~ 130 (177)
+|......-. ...|+++|.++.+...--+.-...+..+ . ...++|-|+.|+|.....
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~L-s----~~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRL-S----KRVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHH-T----TTSEEEEEESTGGGS-HH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHh-c----ccccEEeEEecccccCHH
Confidence 1111111111 1258999999986643222222333333 2 258899999999987765
Q ss_pred CHH
Q 030429 131 SKQ 133 (177)
Q Consensus 131 ~~~ 133 (177)
+..
T Consensus 159 el~ 161 (281)
T PF00735_consen 159 ELQ 161 (281)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 317
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.34 E-value=1.6e-10 Score=86.31 Aligned_cols=150 Identities=17% Similarity=0.197 Sum_probs=83.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC----CCC--------------CCCC---CccceeE---EEEE-----eCCEEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATG----GYS--------------EDMI---PTVGFNM---RKVT-----KGNVTIK 60 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~----~~~--------------~~~~---~t~~~~~---~~~~-----~~~~~~~ 60 (177)
.-.+.|+++|+.++|||||+|+|.+. ... ...+ .|++..+ ..++ .-...+.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 34588999999999999999999976 211 1111 2333222 2222 1236788
Q ss_pred EEecCCch-----------h--------------hHH----hHHHHhc-CCCEEEEEE-eCC----CCCCHHHH-HHHHH
Q 030429 61 LWDLGGQR-----------R--------------FRT----MWERYCR-GVSAILYVV-DAA----DRDSVPIA-RSELH 104 (177)
Q Consensus 61 ~~D~~g~~-----------~--------------~~~----~~~~~~~-~~d~~i~v~-d~~----~~~~~~~~-~~~~~ 104 (177)
++||+|-. + |.. -.+..+. ++|..++|. |.+ .++.+... ..++.
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 99999911 0 000 0123345 789999998 764 12234443 34444
Q ss_pred HHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCC--CChHHHHHH
Q 030429 105 ELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDS--INIDAVIDW 168 (177)
Q Consensus 105 ~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~--~~i~~l~~~ 168 (177)
.+.. .++|+++++||+|-...+. .++.+.+.. .+ ..+++++|+.+- ..|..+++.
T Consensus 175 eLk~----~~kPfiivlN~~dp~~~et-~~l~~~l~e-ky---~vpvl~v~c~~l~~~DI~~il~~ 231 (492)
T TIGR02836 175 ELKE----LNKPFIILLNSTHPYHPET-EALRQELEE-KY---DVPVLAMDVESMRESDILSVLEE 231 (492)
T ss_pred HHHh----cCCCEEEEEECcCCCCchh-HHHHHHHHH-Hh---CCceEEEEHHHcCHHHHHHHHHH
Confidence 4433 4899999999999432222 223333311 11 136777777543 334444443
No 318
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=1e-11 Score=85.81 Aligned_cols=159 Identities=23% Similarity=0.337 Sum_probs=103.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCC---CccceeEEEEEeCCEEEEEEecCCchhhHH---hHHHHhcCCCEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMI---PTVGFNMRKVTKGNVTIKLWDLGGQRRFRT---MWERYCRGVSAILY 86 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~d~~i~ 86 (177)
.+|+++|...|||||+.....+...+.... +|..+....+...-+.+.+||.|||-.+.. -....++++.++++
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALif 107 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIF 107 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEE
Confidence 569999999999999998887665444422 233333334444558899999999865532 12456889999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcC--CCCCCCcEEEEeeCCCcccccCH----HHHH----HHhCcccccCCceeEEEeee
Q 030429 87 VVDAADRDSVPIARSELHELLMK--PSLSGIPLLVLGNKIDKSEALSK----QALV----DQLGLESITDREVCCYMISC 156 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~iiv~nK~D~~~~~~~----~~~~----~~~~~~~~~~~~~~~~~~Sa 156 (177)
|+|+.+. +.+....+...... .-.+++.+-+.+.|+|...++-+ ..+. +.+.......-.+.++.+|.
T Consensus 108 vIDaQdd--y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI 185 (347)
T KOG3887|consen 108 VIDAQDD--YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI 185 (347)
T ss_pred EEechHH--HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence 9999543 44444444443333 22356778889999997654332 1222 22222222234567888888
Q ss_pred cCCCChHHHHHHHHHHhh
Q 030429 157 KDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 157 ~~~~~i~~l~~~l~~~~~ 174 (177)
.+-. |-|.|..+++.+.
T Consensus 186 yDHS-IfEAFSkvVQkLi 202 (347)
T KOG3887|consen 186 YDHS-IFEAFSKVVQKLI 202 (347)
T ss_pred cchH-HHHHHHHHHHHHh
Confidence 7755 8888888888764
No 319
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.33 E-value=1.8e-10 Score=81.26 Aligned_cols=69 Identities=20% Similarity=0.182 Sum_probs=43.6
Q ss_pred EEEEEEecCCchh-------------hHHhHHHHhc-CCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 030429 57 VTIKLWDLGGQRR-------------FRTMWERYCR-GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGN 122 (177)
Q Consensus 57 ~~~~~~D~~g~~~-------------~~~~~~~~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~n 122 (177)
..+.++|+||-.. ...+...|++ ..+.+++|+|++..-.-.........+ .. ...|+++|+|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~l-d~---~~~rti~ViT 200 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEV-DP---QGERTIGVIT 200 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHH-HH---cCCcEEEEEE
Confidence 5788999999532 1234455677 456999999986532222222222222 22 4689999999
Q ss_pred CCCcccc
Q 030429 123 KIDKSEA 129 (177)
Q Consensus 123 K~D~~~~ 129 (177)
|+|..+.
T Consensus 201 K~D~~~~ 207 (240)
T smart00053 201 KLDLMDE 207 (240)
T ss_pred CCCCCCc
Confidence 9998764
No 320
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.32 E-value=1.3e-11 Score=82.75 Aligned_cols=79 Identities=14% Similarity=0.208 Sum_probs=50.3
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHc-CCCCCCCcEEEEeeCCCcccccCH--HHHHHHhCcccccCCceeEEEeeecC
Q 030429 82 SAILYVVDAADRDSVPIARSELHELLM-KPSLSGIPLLVLGNKIDKSEALSK--QALVDQLGLESITDREVCCYMISCKD 158 (177)
Q Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (177)
+.-++|+|.+..+..+. . +.... ..=++|+||.|+.+.... +...+.... -.+..+++++|+++
T Consensus 119 ~~~v~VidvteGe~~P~---------K~gP~i~-~aDllVInK~DLa~~v~~dlevm~~da~~---~np~~~ii~~n~kt 185 (202)
T COG0378 119 HLRVVVIDVTEGEDIPR---------KGGPGIF-KADLLVINKTDLAPYVGADLEVMARDAKE---VNPEAPIIFTNLKT 185 (202)
T ss_pred ceEEEEEECCCCCCCcc---------cCCCcee-EeeEEEEehHHhHHHhCccHHHHHHHHHH---hCCCCCEEEEeCCC
Confidence 37778888766432211 1 11111 145889999999875433 333333221 13456899999999
Q ss_pred CCChHHHHHHHHHHh
Q 030429 159 SINIDAVIDWLIKHS 173 (177)
Q Consensus 159 ~~~i~~l~~~l~~~~ 173 (177)
|+|++++++++...+
T Consensus 186 g~G~~~~~~~i~~~~ 200 (202)
T COG0378 186 GEGLDEWLRFIEPQA 200 (202)
T ss_pred CcCHHHHHHHHHhhc
Confidence 999999999987654
No 321
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=99.31 E-value=5.7e-12 Score=86.62 Aligned_cols=135 Identities=19% Similarity=0.266 Sum_probs=94.9
Q ss_pred CCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCC----------CCCCHHHHHHHHHHHHcCC
Q 030429 41 MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAA----------DRDSVPIARSELHELLMKP 110 (177)
Q Consensus 41 ~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~ 110 (177)
..||.++..+.++..++.|.++|++|+...+..|...+.....+++++.++ +...+++....+..++...
T Consensus 183 RvPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yP 262 (359)
T KOG0085|consen 183 RVPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 262 (359)
T ss_pred ecCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccc
Confidence 446777777778888899999999999988888887777666555555443 3445777788888888887
Q ss_pred CCCCCcEEEEeeCCCcccccCH------------------HHHHHHh----Ccccc-cCCceeEEEeeecCCCChHHHHH
Q 030429 111 SLSGIPLLVLGNKIDKSEALSK------------------QALVDQL----GLESI-TDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 111 ~~~~~~~iiv~nK~D~~~~~~~------------------~~~~~~~----~~~~~-~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
-..+.++|+++||-|+.++... +...+.. ..... ..+-.--.+++|.+-+||.-+|.
T Consensus 263 WF~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFa 342 (359)
T KOG0085|consen 263 WFQNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFA 342 (359)
T ss_pred cccCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHH
Confidence 7788999999999998765321 1111111 00011 11223446799999999999999
Q ss_pred HHHHHhhh
Q 030429 168 WLIKHSKT 175 (177)
Q Consensus 168 ~l~~~~~~ 175 (177)
.+.+.+.+
T Consensus 343 aVkDtiLq 350 (359)
T KOG0085|consen 343 AVKDTILQ 350 (359)
T ss_pred HHHHHHHH
Confidence 88876543
No 322
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=99.28 E-value=2.1e-11 Score=85.18 Aligned_cols=132 Identities=20% Similarity=0.214 Sum_probs=90.1
Q ss_pred ccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCC----------CHHHHHHHHHHHHcCCCCC
Q 030429 44 TVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD----------SVPIARSELHELLMKPSLS 113 (177)
Q Consensus 44 t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------~~~~~~~~~~~~~~~~~~~ 113 (177)
|.|+-...+..+.+.|+++|++|+++-+..|...+.+..++++|+..|... .+.+....+..++...-..
T Consensus 189 TsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~ 268 (379)
T KOG0099|consen 189 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR 268 (379)
T ss_pred ccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh
Confidence 555666667778899999999999999999999999999999999987522 2334455555665554445
Q ss_pred CCcEEEEeeCCCcccccCH------------------------------HHHHHHh-------C--cccccC-CceeEEE
Q 030429 114 GIPLLVLGNKIDKSEALSK------------------------------QALVDQL-------G--LESITD-REVCCYM 153 (177)
Q Consensus 114 ~~~~iiv~nK~D~~~~~~~------------------------------~~~~~~~-------~--~~~~~~-~~~~~~~ 153 (177)
.+.+|+++||.|+..+... .-..+.+ . ...... ..+-..+
T Consensus 269 tisvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHF 348 (379)
T KOG0099|consen 269 TISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF 348 (379)
T ss_pred hhheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccce
Confidence 7899999999997543110 0000000 0 000011 1234567
Q ss_pred eeecCCCChHHHHHHHHHHhhh
Q 030429 154 ISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 154 ~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
++|.+-++|..+|....+.+..
T Consensus 349 TcAvDTenIrrVFnDcrdiIqr 370 (379)
T KOG0099|consen 349 TCAVDTENIRRVFNDCRDIIQR 370 (379)
T ss_pred eEeechHHHHHHHHHHHHHHHH
Confidence 9999999999999988776643
No 323
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.24 E-value=4.1e-11 Score=86.06 Aligned_cols=152 Identities=17% Similarity=0.193 Sum_probs=98.4
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEe-CCEEEEEEecCCc---------hhhHHhHH
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTK-GNVTIKLWDLGGQ---------RRFRTMWE 75 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~-~~~~~~~~D~~g~---------~~~~~~~~ 75 (177)
......-|.++|-+++|||||+++|......+. ...|...+...... .+..+-+-||-|- ..|.....
T Consensus 174 ~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLe 253 (410)
T KOG0410|consen 174 EGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLE 253 (410)
T ss_pred ccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHH
Confidence 345566899999999999999999985443222 22344444444433 3455666699882 23333332
Q ss_pred HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCC----cEEEEeeCCCcccccCHHHHHHHhCcccccCCceeE
Q 030429 76 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGI----PLLVLGNKIDKSEALSKQALVDQLGLESITDREVCC 151 (177)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (177)
....+|+++.|.|+|.|..-......+..+ .....+.. .++-|-||+|..+.....+ + -..
T Consensus 254 -eVaeadlllHvvDiShP~ae~q~e~Vl~vL-~~igv~~~pkl~~mieVdnkiD~e~~~~e~E------------~-n~~ 318 (410)
T KOG0410|consen 254 -EVAEADLLLHVVDISHPNAEEQRETVLHVL-NQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE------------K-NLD 318 (410)
T ss_pred -HHhhcceEEEEeecCCccHHHHHHHHHHHH-HhcCCCcHHHHhHHHhhccccccccccCccc------------c-CCc
Confidence 356799999999999997555555554444 33332222 3567788888765422100 0 025
Q ss_pred EEeeecCCCChHHHHHHHHHHhh
Q 030429 152 YMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 152 ~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
+.+||++|.|++++.+.+-..+.
T Consensus 319 v~isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 319 VGISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred cccccccCccHHHHHHHHHHHhh
Confidence 78999999999999999887654
No 324
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=1.5e-09 Score=79.80 Aligned_cols=81 Identities=23% Similarity=0.359 Sum_probs=55.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEe------------------CCEEEEEEecCCchh--
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTK------------------GNVTIKLWDLGGQRR-- 69 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~------------------~~~~~~~~D~~g~~~-- 69 (177)
.++++|+|.|++|||||.|+++....... +..|++.+...+.. -...+.++|++|--.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 47899999999999999999997664322 22355555444321 125688999998321
Q ss_pred -----hHHhHHHHhcCCCEEEEEEeCCC
Q 030429 70 -----FRTMWERYCRGVSAILYVVDAAD 92 (177)
Q Consensus 70 -----~~~~~~~~~~~~d~~i~v~d~~~ 92 (177)
.-+..-..++++|+++.|++++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 11222344778999999999963
No 325
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.18 E-value=1.4e-10 Score=79.71 Aligned_cols=118 Identities=25% Similarity=0.380 Sum_probs=77.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEE-eCCEEEEEEecCCchhhHHh-----HHHHhcCCC
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVT-KGNVTIKLWDLGGQRRFRTM-----WERYCRGVS 82 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~-----~~~~~~~~d 82 (177)
.-||+++|.+||||||+=..+..... ....+.|+++....+. .++..+++||++|++.+... ....+...+
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~ 83 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ 83 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence 45899999999999997555543222 2334445555554454 45689999999999866432 223577789
Q ss_pred EEEEEEeCCCCCCHHHH---HHHHHHHHcCCCCCCCcEEEEeeCCCcccccC
Q 030429 83 AILYVVDAADRDSVPIA---RSELHELLMKPSLSGIPLLVLGNKIDKSEALS 131 (177)
Q Consensus 83 ~~i~v~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~ 131 (177)
++++|+|++..+.-.++ +.-+..++.. .+.-.+....+|.|+.....
T Consensus 84 vli~vFDves~e~~~D~~~yqk~Le~ll~~--SP~AkiF~l~hKmDLv~~d~ 133 (295)
T KOG3886|consen 84 VLIYVFDVESREMEKDFHYYQKCLEALLQN--SPEAKIFCLLHKMDLVQEDA 133 (295)
T ss_pred eeeeeeeccchhhhhhHHHHHHHHHHHHhc--CCcceEEEEEeechhcccch
Confidence 99999999876533333 3333333333 23455777799999976533
No 326
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=5.3e-10 Score=80.98 Aligned_cols=161 Identities=18% Similarity=0.166 Sum_probs=103.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc----CC------C------CCCCCCccceeEEE--EEeCCEEEEEEecCCchhh
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT----GG------Y------SEDMIPTVGFNMRK--VTKGNVTIKLWDLGGQRRF 70 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~----~~------~------~~~~~~t~~~~~~~--~~~~~~~~~~~D~~g~~~~ 70 (177)
.+...||+-+|....|||||..++.. .. + +...-..+.++... ++.....+-..|+||+.+|
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY 130 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY 130 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence 45668999999999999999887761 10 1 11111222233333 3445567778899999999
Q ss_pred HHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH-----HHHHHHhCccccc
Q 030429 71 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-----QALVDQLGLESIT 145 (177)
Q Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-----~~~~~~~~~~~~~ 145 (177)
-.-+.....+.|++|+|+.++|.. ++..+..+.-..+- .-..+++++||.|..++.+. .+..+.+....+.
T Consensus 131 IKNMItGaaqMDGaILVVaatDG~-MPQTrEHlLLArQV---GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~ 206 (449)
T KOG0460|consen 131 IKNMITGAAQMDGAILVVAATDGP-MPQTREHLLLARQV---GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFD 206 (449)
T ss_pred HHHhhcCccccCceEEEEEcCCCC-CcchHHHHHHHHHc---CCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCC
Confidence 877777778899999999998864 33334443333232 12457777899999854432 3455566666666
Q ss_pred CCceeEEEeeec---CCCC-------hHHHHHHHHHHh
Q 030429 146 DREVCCYMISCK---DSIN-------IDAVIDWLIKHS 173 (177)
Q Consensus 146 ~~~~~~~~~Sa~---~~~~-------i~~l~~~l~~~~ 173 (177)
....|++.-||. +|.+ |..|++.+..++
T Consensus 207 Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyi 244 (449)
T KOG0460|consen 207 GDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYI 244 (449)
T ss_pred CCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccC
Confidence 677888876664 4422 555555555443
No 327
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.15 E-value=3.2e-10 Score=77.90 Aligned_cols=101 Identities=19% Similarity=0.194 Sum_probs=65.2
Q ss_pred chhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHH-HHHHh---Ccc
Q 030429 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQA-LVDQL---GLE 142 (177)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~-~~~~~---~~~ 142 (177)
...+...+..+++.+|++++|+|++++..... ..+... ..++|+++|+||+|+.+.....+ ..... ...
T Consensus 21 ~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~-----~~l~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~ 93 (190)
T cd01855 21 EDFILNLLSSISPKKALVVHVVDIFDFPGSLI-----PRLRLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAA 93 (190)
T ss_pred HHHHHHHHHhcccCCcEEEEEEECccCCCccc-----hhHHHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHh
Confidence 34467888889999999999999987542111 111111 13579999999999975433221 11111 101
Q ss_pred cccCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 143 SITDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 143 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
........++++||+++.|++++++.|.+.+.
T Consensus 94 ~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 94 GLGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred hcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 11111235899999999999999999988763
No 328
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.15 E-value=3.1e-10 Score=81.62 Aligned_cols=77 Identities=27% Similarity=0.350 Sum_probs=52.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEeCC-----------------EEEEEEecCCchhh----H
Q 030429 15 LSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGN-----------------VTIKLWDLGGQRRF----R 71 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~~~----~ 71 (177)
|+++|.|+||||||+|++++...... ...|.......+...+ ..+.++|+||-... .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 57999999999999999997665332 2334454444443332 25899999994321 1
Q ss_pred H---hHHHHhcCCCEEEEEEeCC
Q 030429 72 T---MWERYCRGVSAILYVVDAA 91 (177)
Q Consensus 72 ~---~~~~~~~~~d~~i~v~d~~ 91 (177)
. ..-..++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1 1223467899999999984
No 329
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=3.9e-11 Score=85.63 Aligned_cols=115 Identities=17% Similarity=0.148 Sum_probs=83.1
Q ss_pred EEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHH
Q 030429 57 VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALV 136 (177)
Q Consensus 57 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~ 136 (177)
..+.++|+||++-....+-....-.|++++++.++.++.-+.....+..+-.. .-+.++++.||+|+..++...+..
T Consensus 125 RHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM---~LkhiiilQNKiDli~e~~A~eq~ 201 (466)
T KOG0466|consen 125 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM---KLKHIIILQNKIDLIKESQALEQH 201 (466)
T ss_pred EEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh---hhceEEEEechhhhhhHHHHHHHH
Confidence 35778999999877766655555579999999998776666555555544222 235688889999998876554444
Q ss_pred HHhCccc--ccCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 137 DQLGLES--ITDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 137 ~~~~~~~--~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
++..... ....+.|++++||.-..|++.+.++|+..+.
T Consensus 202 e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 202 EQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred HHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 4433221 2235679999999999999999999998764
No 330
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=1.1e-10 Score=90.89 Aligned_cols=114 Identities=17% Similarity=0.234 Sum_probs=79.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCC---------CCC--------ccceeEE-------EEEeCCEEEEEEec
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSED---------MIP--------TVGFNMR-------KVTKGNVTIKLWDL 64 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~---------~~~--------t~~~~~~-------~~~~~~~~~~~~D~ 64 (177)
.....+|+++|+-++|||+|+..|....-+.. +.. ..++... ..+.+.+-+++.||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 45568999999999999999999984322111 000 0001110 12235678999999
Q ss_pred CCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030429 65 GGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127 (177)
Q Consensus 65 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 127 (177)
||+-.|.......+..+|++++++|+...-++.. ...+....+ .+.|+.+|+||+|..
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhaiq----~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAIQ----NRLPIVVVINKVDRL 262 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHHHh----ccCcEEEEEehhHHH
Confidence 9999999999999999999999999966544433 333333333 479999999999964
No 331
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.13 E-value=5.1e-10 Score=74.46 Aligned_cols=93 Identities=17% Similarity=0.212 Sum_probs=61.5
Q ss_pred HhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeE
Q 030429 72 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCC 151 (177)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (177)
.+.+..+.++|++++|+|++++..... ..+...... .++|+++|+||+|+.+.....++. .+. .....++
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~-~~~----~~~~~~~ 73 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE---LGKKLLIVLNKADLVPKEVLEKWK-SIK----ESEGIPV 73 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh---CCCcEEEEEEhHHhCCHHHHHHHH-HHH----HhCCCcE
Confidence 455667778999999999987643222 122222222 358999999999986532222221 111 1122468
Q ss_pred EEeeecCCCChHHHHHHHHHHhh
Q 030429 152 YMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 152 ~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
+++||+++.|++++++.+.+.+.
T Consensus 74 ~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 74 VYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEEEccccccHHHHHHHHHHHHh
Confidence 99999999999999999988764
No 332
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=9.8e-10 Score=84.58 Aligned_cols=145 Identities=11% Similarity=0.148 Sum_probs=90.2
Q ss_pred ecccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 5 ISLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
..-..+.++-++++|+||+|||||+++++.. +.......+.-.+..+..+..++++.++|.+ ... +....+-+|++
T Consensus 62 tp~d~PPPfIvavvGPpGtGKsTLirSlVrr-~tk~ti~~i~GPiTvvsgK~RRiTflEcp~D--l~~-miDvaKIaDLV 137 (1077)
T COG5192 62 TPKDLPPPFIVAVVGPPGTGKSTLIRSLVRR-FTKQTIDEIRGPITVVSGKTRRITFLECPSD--LHQ-MIDVAKIADLV 137 (1077)
T ss_pred CcccCCCCeEEEeecCCCCChhHHHHHHHHH-HHHhhhhccCCceEEeecceeEEEEEeChHH--HHH-HHhHHHhhhee
Confidence 3445567889999999999999999999832 2222222222333445677789999999943 322 23345568999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC-HHHHHHHhCcccc--cCCceeEEEeeec
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGLESI--TDREVCCYMISCK 157 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~Sa~ 157 (177)
++++|.+-. |+.-.-.+..++...+ -..++-|+|..|+..... .....+++...+. ...++.+|..|.-
T Consensus 138 lLlIdgnfG--fEMETmEFLnil~~HG--mPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV 209 (1077)
T COG5192 138 LLLIDGNFG--FEMETMEFLNILISHG--MPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGV 209 (1077)
T ss_pred EEEeccccC--ceehHHHHHHHHhhcC--CCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEeccc
Confidence 999999553 4444445555555533 234778899999976433 3334444432211 1345567777654
No 333
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.08 E-value=8e-10 Score=77.34 Aligned_cols=152 Identities=19% Similarity=0.161 Sum_probs=92.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEEeCCEEEEEEecCCchhhH-------HhHHHHhcCCCE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQRRFR-------TMWERYCRGVSA 83 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~d~ 83 (177)
.++.++|.|.+||||++..+.+...+..... +.-.......+++..+++.|.||.-... .......+-|+.
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnl 139 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNL 139 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccE
Confidence 4899999999999999999984432222221 1111111234677889999999943221 111223456888
Q ss_pred EEEEEeCCCCCCH-----------------------------------------HHHHHHHHHHHcC-------------
Q 030429 84 ILYVVDAADRDSV-----------------------------------------PIARSELHELLMK------------- 109 (177)
Q Consensus 84 ~i~v~d~~~~~~~-----------------------------------------~~~~~~~~~~~~~------------- 109 (177)
+++|.|+.-|-+. +..+..+.+....
T Consensus 140 i~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~D 219 (358)
T KOG1487|consen 140 IFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDATAD 219 (358)
T ss_pred EEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcchh
Confidence 8888887432111 1111111111111
Q ss_pred -------CCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 110 -------PSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 110 -------~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
.....+|++.+.||+|...-++.+-. .+....+++||.++.|++++++.+.+.+.
T Consensus 220 dLIdvVegnr~yVp~iyvLNkIdsISiEELdii----------~~iphavpISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 220 DLIDVVEGNRIYVPCIYVLNKIDSISIEELDII----------YTIPHAVPISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred hhhhhhccCceeeeeeeeecccceeeeecccee----------eeccceeecccccccchHHHHHHHhhcch
Confidence 11135799999999998765432211 12225789999999999999999988765
No 334
>PRK12289 GTPase RsgA; Reviewed
Probab=99.07 E-value=8.1e-10 Score=82.27 Aligned_cols=89 Identities=19% Similarity=0.138 Sum_probs=63.4
Q ss_pred HHHHhcCCCEEEEEEeCCCCC-CHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEE
Q 030429 74 WERYCRGVSAILYVVDAADRD-SVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCY 152 (177)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (177)
.+..+.++|.+++|+|+.++. ....+..++..... .++|+++|+||+|+.+....+.+.+.+.. .+..++
T Consensus 83 ~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~----~~ip~ILVlNK~DLv~~~~~~~~~~~~~~-----~g~~v~ 153 (352)
T PRK12289 83 DRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES----TGLEIVLCLNKADLVSPTEQQQWQDRLQQ-----WGYQPL 153 (352)
T ss_pred echhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEchhcCChHHHHHHHHHHHh-----cCCeEE
Confidence 344578899999999998876 33344555554422 46899999999999765333344443322 223689
Q ss_pred EeeecCCCChHHHHHHHHH
Q 030429 153 MISCKDSINIDAVIDWLIK 171 (177)
Q Consensus 153 ~~Sa~~~~~i~~l~~~l~~ 171 (177)
++||+++.|+++|++.+..
T Consensus 154 ~iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 154 FISVETGIGLEALLEQLRN 172 (352)
T ss_pred EEEcCCCCCHHHHhhhhcc
Confidence 9999999999999998864
No 335
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.03 E-value=7.9e-09 Score=76.20 Aligned_cols=163 Identities=19% Similarity=0.226 Sum_probs=103.3
Q ss_pred ecccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCC------------------CCCccceeEEEEEe------------
Q 030429 5 ISLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSED------------------MIPTVGFNMRKVTK------------ 54 (177)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~------------------~~~t~~~~~~~~~~------------ 54 (177)
.....+..+.|+..|....|||||+-.|..+..... ..+...+..+.+..
T Consensus 110 ~~~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~ 189 (527)
T COG5258 110 KTEEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDE 189 (527)
T ss_pred cccCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccH
Confidence 344578889999999999999999999885543222 11222222222221
Q ss_pred ---------CCEEEEEEecCCchhhHHhHHH-H-hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 030429 55 ---------GNVTIKLWDLGGQRRFRTMWER-Y-CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNK 123 (177)
Q Consensus 55 ---------~~~~~~~~D~~g~~~~~~~~~~-~-~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK 123 (177)
.+.-+.++|+.|++.+-..... . -++.|..++++.+++.-+-. .+..+.-.+- -..|++++.||
T Consensus 190 aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~-tkEHLgi~~a----~~lPviVvvTK 264 (527)
T COG5258 190 AEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM-TKEHLGIALA----MELPVIVVVTK 264 (527)
T ss_pred HHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh-hhHhhhhhhh----hcCCEEEEEEe
Confidence 1245788999999988654433 2 35689999999997753221 1223322222 26899999999
Q ss_pred CCcccccCHHHHHHH----h---Ccc----------------cccCC-ceeEEEeeecCCCChHHHHHHHHHH
Q 030429 124 IDKSEALSKQALVDQ----L---GLE----------------SITDR-EVCCYMISCKDSINIDAVIDWLIKH 172 (177)
Q Consensus 124 ~D~~~~~~~~~~~~~----~---~~~----------------~~~~~-~~~~~~~Sa~~~~~i~~l~~~l~~~ 172 (177)
+|+.+++..+...+. + +.. ....+ -.|+|.+|+-+|+|++-|.+.+...
T Consensus 265 ~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~L 337 (527)
T COG5258 265 IDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLL 337 (527)
T ss_pred cccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHhC
Confidence 999876544322222 1 110 01112 4799999999999998887766543
No 336
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.00 E-value=2.6e-09 Score=71.13 Aligned_cols=91 Identities=20% Similarity=0.193 Sum_probs=60.2
Q ss_pred HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEee
Q 030429 76 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMIS 155 (177)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 155 (177)
..++++|++++|+|++++... ....+...+... ..+.|+++|+||+|+.+.+....+.+.+.... . ...+++|
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~--~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~---~-~~~~~iS 76 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGT--RCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILSKEY---P-TIAFHAS 76 (157)
T ss_pred HhhhhCCEEEEEEECCCCccc--cCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHhcCC---c-EEEEEee
Confidence 347789999999999886321 112222222221 23589999999999976543344444443221 1 2257899
Q ss_pred ecCCCChHHHHHHHHHHh
Q 030429 156 CKDSINIDAVIDWLIKHS 173 (177)
Q Consensus 156 a~~~~~i~~l~~~l~~~~ 173 (177)
|+.+.|++++++.+.+.+
T Consensus 77 a~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 77 INNPFGKGSLIQLLRQFS 94 (157)
T ss_pred ccccccHHHHHHHHHHHH
Confidence 999999999999998764
No 337
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.99 E-value=1.9e-08 Score=73.82 Aligned_cols=116 Identities=19% Similarity=0.367 Sum_probs=69.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCC----------CCCccceeEEEEE--eCC--EEEEEEecCCchhh---HHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSED----------MIPTVGFNMRKVT--KGN--VTIKLWDLGGQRRF---RTM 73 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~----------~~~t~~~~~~~~~--~~~--~~~~~~D~~g~~~~---~~~ 73 (177)
-.++|.++|+.|+|||||+|+|++...... ..++..+...... .++ .+++++||||-.++ ...
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 458999999999999999999997633222 1233334444322 233 67889999992211 011
Q ss_pred H-----------HHH------------hc--CCCEEEEEEeCCCCCCHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030429 74 W-----------ERY------------CR--GVSAILYVVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKS 127 (177)
Q Consensus 74 ~-----------~~~------------~~--~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~ 127 (177)
| ..| +. ..|+++|.+..+... +..+. ..+..+ . ..+.+|-|+.|+|..
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~-l~~~DIe~Mk~l-s----~~vNlIPVI~KaD~l 175 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHG-LKPLDIEAMKRL-S----KRVNLIPVIAKADTL 175 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCC-CCHHHHHHHHHH-h----cccCeeeeeeccccC
Confidence 1 111 11 258999999865432 22222 222222 2 357788899999987
Q ss_pred cccCH
Q 030429 128 EALSK 132 (177)
Q Consensus 128 ~~~~~ 132 (177)
...+.
T Consensus 176 T~~El 180 (373)
T COG5019 176 TDDEL 180 (373)
T ss_pred CHHHH
Confidence 65544
No 338
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.98 E-value=8.4e-10 Score=84.33 Aligned_cols=158 Identities=23% Similarity=0.370 Sum_probs=109.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccce-eEEEE-EeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGF-NMRKV-TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
.+|++|+|..++|||+|+.+++.+.+.....+.-+- ....+ ......+.+.|.+|.... .+....|++|+|+.
T Consensus 30 elk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~a-----Qft~wvdavIfvf~ 104 (749)
T KOG0705|consen 30 ELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPDA-----QFCQWVDAVVFVFS 104 (749)
T ss_pred hhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCchh-----hhhhhccceEEEEE
Confidence 589999999999999999999988887776665442 22222 334455666688873322 33556899999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHH
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 169 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 169 (177)
..+..+++........+..+.....+|.++++++--.............-.........+.+|++++..|.++...|+.+
T Consensus 105 ~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~~ 184 (749)
T KOG0705|consen 105 VEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQEV 184 (749)
T ss_pred eccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHHHH
Confidence 99999999998888888766655668888888876432211110001111111122334579999999999999999999
Q ss_pred HHHhh
Q 030429 170 IKHSK 174 (177)
Q Consensus 170 ~~~~~ 174 (177)
...+.
T Consensus 185 ~~k~i 189 (749)
T KOG0705|consen 185 AQKIV 189 (749)
T ss_pred HHHHH
Confidence 87754
No 339
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=4.2e-09 Score=77.40 Aligned_cols=155 Identities=21% Similarity=0.278 Sum_probs=96.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCC----------------CC-------ccceeEEE--EE------------
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDM----------------IP-------TVGFNMRK--VT------------ 53 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~----------------~~-------t~~~~~~~--~~------------ 53 (177)
-.++++++|...+|||||+--|.++...... .. +.+++... ++
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 4689999999999999999988854432211 11 11111111 11
Q ss_pred eCCEEEEEEecCCchhhHHhHHHHhcC--CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC
Q 030429 54 KGNVTIKLWDLGGQRRFRTMWERYCRG--VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS 131 (177)
Q Consensus 54 ~~~~~~~~~D~~g~~~~~~~~~~~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~ 131 (177)
....-+.++|.+|+.+|.......+.+ .|.+++|++++....... +..+.-+.. -++|++++++|+|+.+...
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~A----L~iPfFvlvtK~Dl~~~~~ 320 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAA----LNIPFFVLVTKMDLVDRQG 320 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHH----hCCCeEEEEEeeccccchh
Confidence 123457899999999998766555554 488889998866533322 222222222 3799999999999987643
Q ss_pred HHH----HHHHhCc---------------------ccccCCceeEEEeeecCCCChHHHHHHHH
Q 030429 132 KQA----LVDQLGL---------------------ESITDREVCCYMISCKDSINIDAVIDWLI 170 (177)
Q Consensus 132 ~~~----~~~~~~~---------------------~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 170 (177)
.+. +...+.. ......-.|+|.+|+-+|+|++-+-..|.
T Consensus 321 ~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fLn 384 (591)
T KOG1143|consen 321 LKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFLN 384 (591)
T ss_pred HHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHHh
Confidence 322 2222211 11112246889999999999988776654
No 340
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.97 E-value=3.8e-09 Score=76.99 Aligned_cols=88 Identities=14% Similarity=0.111 Sum_probs=63.4
Q ss_pred HHHhcCCCEEEEEEeCCCCC-CHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEE
Q 030429 75 ERYCRGVSAILYVVDAADRD-SVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYM 153 (177)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (177)
+..+.++|.+++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.+........... ...+.++++
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~-----~~~g~~v~~ 143 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELVEA-----LALGYPVLA 143 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHHHH-----HhCCCeEEE
Confidence 33477899999999999887 77777777765543 368999999999997642211111111 112347899
Q ss_pred eeecCCCChHHHHHHHHH
Q 030429 154 ISCKDSINIDAVIDWLIK 171 (177)
Q Consensus 154 ~Sa~~~~~i~~l~~~l~~ 171 (177)
+||+++.|+++|++.|..
T Consensus 144 vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 144 VSAKTGEGLDELREYLKG 161 (287)
T ss_pred EECCCCccHHHHHhhhcc
Confidence 999999999999988753
No 341
>PRK00098 GTPase RsgA; Reviewed
Probab=98.97 E-value=3.1e-09 Score=77.90 Aligned_cols=85 Identities=20% Similarity=0.160 Sum_probs=59.5
Q ss_pred HhcCCCEEEEEEeCCCCCCHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCccccc-CHHHHHHHhCcccccCCceeEEEe
Q 030429 77 YCRGVSAILYVVDAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEAL-SKQALVDQLGLESITDREVCCYMI 154 (177)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 154 (177)
.+.++|.+++|+|++++...... ..|+... .. .++|+++|+||+|+.+.. ..+++.+.+.. .+.+++++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~-~~---~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~-----~g~~v~~v 147 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLA-EA---NGIKPIIVLNKIDLLDDLEEARELLALYRA-----IGYDVLEL 147 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEhHHcCCCHHHHHHHHHHHHH-----CCCeEEEE
Confidence 35789999999999888766655 4444443 32 468999999999996321 11222222211 12478999
Q ss_pred eecCCCChHHHHHHHH
Q 030429 155 SCKDSINIDAVIDWLI 170 (177)
Q Consensus 155 Sa~~~~~i~~l~~~l~ 170 (177)
||+++.|++++++.+.
T Consensus 148 SA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 148 SAKEGEGLDELKPLLA 163 (298)
T ss_pred eCCCCccHHHHHhhcc
Confidence 9999999999998874
No 342
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=2.1e-08 Score=73.67 Aligned_cols=117 Identities=22% Similarity=0.272 Sum_probs=76.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCccc-eeEEE--------------EEe----------C-------
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSED---MIPTVG-FNMRK--------------VTK----------G------- 55 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~---~~~t~~-~~~~~--------------~~~----------~------- 55 (177)
.+.=|+++|+...|||||++.|++..++.. ..+|.. +.... ++. +
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 345689999999999999999998776533 112222 11111 000 0
Q ss_pred ------C---EEEEEEecCCchh-----------hHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCC
Q 030429 56 ------N---VTIKLWDLGGQRR-----------FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGI 115 (177)
Q Consensus 56 ------~---~~~~~~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (177)
+ -.++++||||... |....+=+...+|.++++||+.--+--++....+..+..+ .-
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~----Ed 212 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH----ED 212 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC----cc
Confidence 0 2588999999432 2333344567899999999997666556666666655443 33
Q ss_pred cEEEEeeCCCcccccC
Q 030429 116 PLLVLGNKIDKSEALS 131 (177)
Q Consensus 116 ~~iiv~nK~D~~~~~~ 131 (177)
.+-+|+||+|.++.++
T Consensus 213 kiRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 213 KIRVVLNKADQVDTQQ 228 (532)
T ss_pred eeEEEeccccccCHHH
Confidence 5667899999988743
No 343
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=1.9e-09 Score=85.04 Aligned_cols=113 Identities=21% Similarity=0.286 Sum_probs=76.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCC--------------CCCCCCccceeEEE----EEeCCEEEEEEecCCchhh
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGY--------------SEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRF 70 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~--------------~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~ 70 (177)
.+.--+++++-+...|||||..+|+..+- .+...++-+++... ...+++.++++|.||+-+|
T Consensus 6 ~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf 85 (887)
T KOG0467|consen 6 SEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDF 85 (887)
T ss_pred CCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccch
Confidence 34456899999999999999999983221 11111233333332 3347899999999999999
Q ss_pred HHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 030429 71 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 126 (177)
Q Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~ 126 (177)
.+.......-+|.+++++|+...---. ....+...+. .+...++|+||+|.
T Consensus 86 ~sevssas~l~d~alvlvdvvegv~~q-t~~vlrq~~~----~~~~~~lvinkidr 136 (887)
T KOG0467|consen 86 SSEVSSASRLSDGALVLVDVVEGVCSQ-TYAVLRQAWI----EGLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhhhcCCcEEEEeeccccchh-HHHHHHHHHH----ccCceEEEEehhhh
Confidence 999999999999999999995431111 1122222222 35667888999993
No 344
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.94 E-value=3.4e-09 Score=70.59 Aligned_cols=53 Identities=26% Similarity=0.346 Sum_probs=34.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCccceeEEEEEeCCEEEEEEecCC
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSED---MIPTVGFNMRKVTKGNVTIKLWDLGG 66 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g 66 (177)
...+|+++|.||+|||||+|++.+...... .+.|..... +.. +-.+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQY--ITL-MKRIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEE--EEc-CCCEEEEECcC
Confidence 467899999999999999999986543211 111221111 111 22467889998
No 345
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.93 E-value=4e-09 Score=68.96 Aligned_cols=53 Identities=26% Similarity=0.347 Sum_probs=34.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CccceeEEEEEeCCEEEEEEecCCc
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMI-PTVGFNMRKVTKGNVTIKLWDLGGQ 67 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~D~~g~ 67 (177)
+++++|.+|+|||||+|++.+........ +........+..++ .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence 89999999999999999999765432111 11111222233333 5789999994
No 346
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.92 E-value=9.8e-09 Score=68.22 Aligned_cols=82 Identities=21% Similarity=0.198 Sum_probs=54.8
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHH-HHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCC
Q 030429 82 SAILYVVDAADRDSVPIARSELH-ELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSI 160 (177)
Q Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (177)
|++++|+|+.++.+... .++. ..... .++|+++|+||+|+.+.+...++...+... ....++++||+++.
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~---~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~----~~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIKE---KGKKLILVLNKADLVPKEVLRKWLAYLRHS----YPTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHhc---CCCCEEEEEechhcCCHHHHHHHHHHHHhh----CCceEEEEeccCCc
Confidence 78999999988754432 2222 22222 468999999999997653333333222211 12358899999999
Q ss_pred ChHHHHHHHHHH
Q 030429 161 NIDAVIDWLIKH 172 (177)
Q Consensus 161 ~i~~l~~~l~~~ 172 (177)
|++++.+.+.+.
T Consensus 72 gi~~L~~~i~~~ 83 (155)
T cd01849 72 GIEKKESAFTKQ 83 (155)
T ss_pred ChhhHHHHHHHH
Confidence 999999998764
No 347
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.92 E-value=8.7e-09 Score=69.59 Aligned_cols=98 Identities=14% Similarity=0.126 Sum_probs=64.6
Q ss_pred cCCc-hhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcc
Q 030429 64 LGGQ-RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLE 142 (177)
Q Consensus 64 ~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~ 142 (177)
.||+ .+........++.+|++++|+|++++...... .+.... .+.|.++|+||+|+.+.....++.+.+..
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~--~i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~- 73 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP--LLEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFES- 73 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh--hhHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHHh-
Confidence 3443 34556667778999999999999876432221 111111 24789999999999654322222222221
Q ss_pred cccCCceeEEEeeecCCCChHHHHHHHHHHh
Q 030429 143 SITDREVCCYMISCKDSINIDAVIDWLIKHS 173 (177)
Q Consensus 143 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 173 (177)
....++.+||+++.|++++.+.+...+
T Consensus 74 ----~~~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 74 ----KGEKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred ----cCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 123578999999999999999998865
No 348
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.91 E-value=4.8e-09 Score=74.14 Aligned_cols=157 Identities=17% Similarity=0.162 Sum_probs=91.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-ccc-eeEEEEEeCCEEEEEEecCC----------chhhHHhHHH
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIP-TVG-FNMRKVTKGNVTIKLWDLGG----------QRRFRTMWER 76 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~-t~~-~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~~ 76 (177)
..+..++++.|..++|||||+|.++.......... ..+ .+......-+..+.++|.|| ..+...+...
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~ 212 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKS 212 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHH
Confidence 45678999999999999999999996655444333 211 22222333455778889999 1222333334
Q ss_pred Hhc---CCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--H----HHHHH---HhCcccc
Q 030429 77 YCR---GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--K----QALVD---QLGLESI 144 (177)
Q Consensus 77 ~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~----~~~~~---~~~~~~~ 144 (177)
|+. .--.+++++|++-+ +.........++.. .+.|.-+|.||||...... . ..... .+. ...
T Consensus 213 Y~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~-~~~ 286 (320)
T KOG2486|consen 213 YLLERENLVRVFLLVDASVP--IQPTDNPEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLI-RGV 286 (320)
T ss_pred HHHhhhhhheeeeeeeccCC--CCCCChHHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhcc-ccc
Confidence 432 23356677777643 22222222333333 4799999999999754321 0 11111 111 111
Q ss_pred cCCceeEEEeeecCCCChHHHHHHHHH
Q 030429 145 TDREVCCYMISCKDSINIDAVIDWLIK 171 (177)
Q Consensus 145 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 171 (177)
.....+++.+|+.++.|+++|+=.+.+
T Consensus 287 f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 287 FLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred eeccCCceeeecccccCceeeeeehhh
Confidence 122346778999999999998766554
No 349
>PRK12288 GTPase RsgA; Reviewed
Probab=98.90 E-value=1.3e-08 Score=75.86 Aligned_cols=89 Identities=19% Similarity=0.175 Sum_probs=63.7
Q ss_pred hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeec
Q 030429 78 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCK 157 (177)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (177)
....|.+++|++.+...++..+..|+..... .++|.++|+||+|+.+....+...+.... +...+.+++++||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~----~~i~~VIVlNK~DL~~~~~~~~~~~~~~~--y~~~g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET----LGIEPLIVLNKIDLLDDEGRAFVNEQLDI--YRNIGYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCcHHHHHHHHHHHH--HHhCCCeEEEEeCC
Confidence 4558999999999888888888888775432 36899999999999765322222221111 11123479999999
Q ss_pred CCCChHHHHHHHHHH
Q 030429 158 DSINIDAVIDWLIKH 172 (177)
Q Consensus 158 ~~~~i~~l~~~l~~~ 172 (177)
++.|+++|++.|...
T Consensus 192 tg~GideL~~~L~~k 206 (347)
T PRK12288 192 TGEGLEELEAALTGR 206 (347)
T ss_pred CCcCHHHHHHHHhhC
Confidence 999999999998753
No 350
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.90 E-value=5.4e-09 Score=70.50 Aligned_cols=52 Identities=23% Similarity=0.332 Sum_probs=35.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCccceeEEEEEeCCEEEEEEecCC
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSED---MIPTVGFNMRKVTKGNVTIKLWDLGG 66 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g 66 (177)
.++++++|.||+|||||+|++.+...... .+.|...... .. +..+.++||||
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~--~~-~~~~~l~DtPG 171 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEV--HL-DKKVKLLDSPG 171 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEE--Ee-CCCEEEEECcC
Confidence 47999999999999999999996543211 1122222222 22 23678999998
No 351
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.90 E-value=1.4e-08 Score=73.75 Aligned_cols=100 Identities=18% Similarity=0.177 Sum_probs=67.1
Q ss_pred cCCch-hhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcc
Q 030429 64 LGGQR-RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLE 142 (177)
Q Consensus 64 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~ 142 (177)
.|||- +........+..+|++++|+|+.++.+... ..+.... .+.|+++|+||+|+.+.....++.+.+..
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~- 75 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEE- 75 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHH-
Confidence 45643 344556677889999999999977644322 1222222 25799999999999754323333333321
Q ss_pred cccCCceeEEEeeecCCCChHHHHHHHHHHhhh
Q 030429 143 SITDREVCCYMISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 143 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
.+.+++++||+++.|++++.+.+.+.+.+
T Consensus 76 ----~~~~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 76 ----KGIKALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred ----cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 12368999999999999999999887643
No 352
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.88 E-value=5.3e-09 Score=78.53 Aligned_cols=99 Identities=24% Similarity=0.307 Sum_probs=63.7
Q ss_pred chhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc-CHHHHHHHhCc--cc
Q 030429 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL-SKQALVDQLGL--ES 143 (177)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~-~~~~~~~~~~~--~~ 143 (177)
+++|......+...++++++|+|+.+...- |...+.... ...|+++|+||+|+.+.. ..++..+.+.. ..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s-----~~~~l~~~~--~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGS-----LIPELKRFV--GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCC-----ccHHHHHHh--CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHH
Confidence 567888888888899999999999775311 112221111 257999999999987543 22222221110 00
Q ss_pred ccCCceeEEEeeecCCCChHHHHHHHHHH
Q 030429 144 ITDREVCCYMISCKDSINIDAVIDWLIKH 172 (177)
Q Consensus 144 ~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 172 (177)
.......++++||++|.|++++++.|.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 00111248899999999999999999764
No 353
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.87 E-value=2.4e-07 Score=60.62 Aligned_cols=147 Identities=21% Similarity=0.240 Sum_probs=79.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCC--EEEEEEecCC---------------------
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGN--VTIKLWDLGG--------------------- 66 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~D~~g--------------------- 66 (177)
+..+||.+.|+|||||||++.++.+.- .......-++.+.++..++ .-|.+.|+..
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L-~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V 81 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKL-REKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGV 81 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHH-HhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEe
Confidence 456899999999999999999987321 1111223334444443332 3355555552
Q ss_pred -ch----hhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCc
Q 030429 67 -QR----RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGL 141 (177)
Q Consensus 67 -~~----~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~ 141 (177)
.+ -.....+.+++.+|++++ |= --.++.....+...+........|.+.++.+.+..+- .+++. ....
T Consensus 82 ~v~~le~i~~~al~rA~~~aDvIII--DE--IGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~P~--v~~ik-~~~~ 154 (179)
T COG1618 82 NVEGLEEIAIPALRRALEEADVIII--DE--IGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRHPL--VQRIK-KLGG 154 (179)
T ss_pred eHHHHHHHhHHHHHHHhhcCCEEEE--ec--ccchhhccHHHHHHHHHHhcCCCcEEEEEecccCChH--HHHhh-hcCC
Confidence 01 112233445666787664 32 2234433444444444433357888888887765222 11111 1111
Q ss_pred ccccCCceeEEEeeecCCCChHHHHHHHHHHhhh
Q 030429 142 ESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 142 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
.+++ .+.+|=+.++..+.+.+..
T Consensus 155 --------v~v~---lt~~NR~~i~~~Il~~L~~ 177 (179)
T COG1618 155 --------VYVF---LTPENRNRILNEILSVLKG 177 (179)
T ss_pred --------EEEE---EccchhhHHHHHHHHHhcc
Confidence 1333 5556666888888887764
No 354
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=5.5e-08 Score=71.82 Aligned_cols=116 Identities=18% Similarity=0.290 Sum_probs=68.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCC---------CCCccceeEEEEE--eCC--EEEEEEecCCchhh--------
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSED---------MIPTVGFNMRKVT--KGN--VTIKLWDLGGQRRF-------- 70 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~---------~~~t~~~~~~~~~--~~~--~~~~~~D~~g~~~~-------- 70 (177)
.+.+.++|+.|.|||||+|+|+....... ...+..+...... .++ .+++++||||-.+.
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 48999999999999999999986643322 1123333333332 233 67889999992111
Q ss_pred ------HHhHHHH-----------hc--CCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC
Q 030429 71 ------RTMWERY-----------CR--GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS 131 (177)
Q Consensus 71 ------~~~~~~~-----------~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~ 131 (177)
.+....| +. ..|+++|.+..+... +..+.-.+..-+. ..+.+|-|+.|+|.....+
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~Di~~Mk~l~----~~vNiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPLDIEFMKKLS----KKVNLIPVIAKADTLTKDE 175 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHhhHHHHHHHh----ccccccceeeccccCCHHH
Confidence 0111111 22 358999999865432 2222222222212 3678888999999876544
Q ss_pred H
Q 030429 132 K 132 (177)
Q Consensus 132 ~ 132 (177)
.
T Consensus 176 l 176 (366)
T KOG2655|consen 176 L 176 (366)
T ss_pred H
Confidence 3
No 355
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.1e-07 Score=74.75 Aligned_cols=145 Identities=17% Similarity=0.321 Sum_probs=81.8
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCccc----------------------------------------
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGY-SEDMIPTVG---------------------------------------- 46 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~-~~~~~~t~~---------------------------------------- 46 (177)
..+...||+|.|..+.||||++|+++.... +...++++.
T Consensus 105 l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~ 184 (749)
T KOG0448|consen 105 LARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDK 184 (749)
T ss_pred HhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccc
Confidence 356788999999999999999999984321 111111000
Q ss_pred -----eeEEEEEeCC------EEEEEEecCCch---hhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCC
Q 030429 47 -----FNMRKVTKGN------VTIKLWDLGGQR---RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSL 112 (177)
Q Consensus 47 -----~~~~~~~~~~------~~~~~~D~~g~~---~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 112 (177)
.-...+-.++ -++.++|.||-. ...+....+..++|++|+|.++.+. +......+......
T Consensus 185 ~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEnt--lt~sek~Ff~~vs~--- 259 (749)
T KOG0448|consen 185 DLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENT--LTLSEKQFFHKVSE--- 259 (749)
T ss_pred ccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccH--hHHHHHHHHHHhhc---
Confidence 0000000011 257788999943 3344445677889999999998553 33333333332222
Q ss_pred CCCcEEEEeeCCCcccc--cCHHHHHHHhC---cccccCCceeEEEeeec
Q 030429 113 SGIPLLVLGNKIDKSEA--LSKQALVDQLG---LESITDREVCCYMISCK 157 (177)
Q Consensus 113 ~~~~~iiv~nK~D~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~Sa~ 157 (177)
.+..++|+.||+|.... +..+.+.++.. -.....-.-.+|++|++
T Consensus 260 ~KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 260 EKPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred cCCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence 24456667799998654 23344444422 11111223357889965
No 356
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.82 E-value=1.4e-08 Score=68.53 Aligned_cols=57 Identities=21% Similarity=0.303 Sum_probs=37.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCccceeEEEEEeCCEEEEEEecCCc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSED-MIPTVGFNMRKVTKGNVTIKLWDLGGQ 67 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~ 67 (177)
+..++++++|.+|+|||||+|++.+..+... ..+........+..+ ..+.+|||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence 4557999999999999999999997665321 111111222223332 45789999993
No 357
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.82 E-value=4.6e-08 Score=72.91 Aligned_cols=80 Identities=21% Similarity=0.202 Sum_probs=56.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-CCC--CCCccceeEEEEEeCC-----------------EEEEEEecCCchhh--
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGY-SED--MIPTVGFNMRKVTKGN-----------------VTIKLWDLGGQRRF-- 70 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~-~~~--~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~~~-- 70 (177)
++++++|.|++|||||++.+++... ... ...|.......+...+ ..+.+.|+||....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999997765 332 2234454444443322 46889999994332
Q ss_pred -----HHhHHHHhcCCCEEEEEEeCCC
Q 030429 71 -----RTMWERYCRGVSAILYVVDAAD 92 (177)
Q Consensus 71 -----~~~~~~~~~~~d~~i~v~d~~~ 92 (177)
-...-..++.+|+++.|+++.+
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 1233446788999999999854
No 358
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.81 E-value=1.4e-07 Score=65.64 Aligned_cols=125 Identities=15% Similarity=0.251 Sum_probs=70.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCC---------CCCccceeEEE--EEeCC--EEEEEEecCCc---------
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSED---------MIPTVGFNMRK--VTKGN--VTIKLWDLGGQ--------- 67 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~---------~~~t~~~~~~~--~~~~~--~~~~~~D~~g~--------- 67 (177)
--.++|.++|.+|.|||||+|.+........ ...|.++.... +.-++ .+++++||||-
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~nc 123 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNC 123 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccch
Confidence 3468999999999999999999985433221 22233333332 33344 46778999992
Q ss_pred ---------hhhHHhHHH--------HhcC--CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 68 ---------RRFRTMWER--------YCRG--VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 68 ---------~~~~~~~~~--------~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
+++...++. .+.+ .+++++.+..+..+--.-....+..+.+ -..++-|+.|+|...
T Consensus 124 WePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~-----vvNvvPVIakaDtlT 198 (336)
T KOG1547|consen 124 WEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE-----VVNVVPVIAKADTLT 198 (336)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh-----hheeeeeEeeccccc
Confidence 112111111 1222 4788888877653321111222223222 356778889999876
Q ss_pred ccCHHHHHHHh
Q 030429 129 ALSKQALVDQL 139 (177)
Q Consensus 129 ~~~~~~~~~~~ 139 (177)
-++..++.++.
T Consensus 199 leEr~~FkqrI 209 (336)
T KOG1547|consen 199 LEERSAFKQRI 209 (336)
T ss_pred HHHHHHHHHHH
Confidence 55544444433
No 359
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.81 E-value=1.1e-08 Score=70.35 Aligned_cols=26 Identities=23% Similarity=0.501 Sum_probs=22.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCC
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGG 36 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~ 36 (177)
+..+++++|.+|+|||||+|++.+..
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999999654
No 360
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.79 E-value=7.3e-07 Score=68.94 Aligned_cols=99 Identities=17% Similarity=0.230 Sum_probs=68.0
Q ss_pred EEEEEecCCc-------------hhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 030429 58 TIKLWDLGGQ-------------RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 124 (177)
Q Consensus 58 ~~~~~D~~g~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~ 124 (177)
+..++|+||. +....+...++...+++|+|+--. +.+.-+....++.....-.+...|+|+||+
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence 4567899992 233455667899999999999532 344445555555555555678899999999
Q ss_pred Ccccc--cCHHHHHHHhCcccccCCceeEEEeeecCC
Q 030429 125 DKSEA--LSKQALVDQLGLESITDREVCCYMISCKDS 159 (177)
Q Consensus 125 D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 159 (177)
|+.+. ..+..+.+.+.-..+.-+...||.+-.-.|
T Consensus 490 DlAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrG 526 (980)
T KOG0447|consen 490 DLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKG 526 (980)
T ss_pred chhhhccCCHHHHHHHHhcCccchhhcceeEEEecCC
Confidence 99875 456777777766666556666776655444
No 361
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.77 E-value=2.8e-08 Score=72.15 Aligned_cols=55 Identities=22% Similarity=0.301 Sum_probs=37.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCccceeEEEEEeCCEEEEEEecCCc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSED---MIPTVGFNMRKVTKGNVTIKLWDLGGQ 67 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~ 67 (177)
...++++++|.||+|||||+|++.+...... ...|.... .+..+ -.+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQ--WIKLS-DGLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceE--EEEeC-CCEEEEECCCc
Confidence 3468999999999999999999986543222 11222222 22232 25789999995
No 362
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.76 E-value=5.7e-08 Score=70.94 Aligned_cols=100 Identities=16% Similarity=0.170 Sum_probs=66.9
Q ss_pred cCCch-hhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcc
Q 030429 64 LGGQR-RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLE 142 (177)
Q Consensus 64 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~ 142 (177)
.|||- +........+..+|++++|+|+.++.+... .++..... +.|+++|+||+|+.+....+.+.+.+..
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~-----~kp~iiVlNK~DL~~~~~~~~~~~~~~~- 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG-----NKPRLLILNKSDLADPEVTKKWIEYFEE- 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC-----CCCEEEEEEchhcCCHHHHHHHHHHHHH-
Confidence 56653 334555667889999999999977644322 22333321 5799999999999654323333333321
Q ss_pred cccCCceeEEEeeecCCCChHHHHHHHHHHhhh
Q 030429 143 SITDREVCCYMISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 143 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
...+++.+|++++.|++++.+.+.+.+.+
T Consensus 79 ----~~~~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 79 ----QGIKALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred ----cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 12367899999999999999998887643
No 363
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.76 E-value=3.2e-08 Score=72.23 Aligned_cols=55 Identities=22% Similarity=0.293 Sum_probs=37.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCC-C--CCccceeEEEEEeCCEEEEEEecCCc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSED-M--IPTVGFNMRKVTKGNVTIKLWDLGGQ 67 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~--~~t~~~~~~~~~~~~~~~~~~D~~g~ 67 (177)
+..++++++|.||+|||||+|++.+...... . ..|.... .+.. +..+.++||||.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQ--WIKL-GKGLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEE--EEEe-CCcEEEEECCCc
Confidence 4568999999999999999999997553221 1 1122222 2222 235789999994
No 364
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.75 E-value=4.3e-08 Score=65.17 Aligned_cols=55 Identities=25% Similarity=0.434 Sum_probs=36.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEeCCEEEEEEecCC
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKGNVTIKLWDLGG 66 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~D~~g 66 (177)
...+++++|.+|+|||||+|++.+... ....++.+.+.. ..-..+..+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITSKIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence 467899999999999999999985442 222333333221 1111234789999998
No 365
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.75 E-value=4.4e-07 Score=63.89 Aligned_cols=84 Identities=20% Similarity=0.126 Sum_probs=55.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC--CCCCC---CCCccceeEEEEEe---CCEEEEEEecCCchhhH------HhHH
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATG--GYSED---MIPTVGFNMRKVTK---GNVTIKLWDLGGQRRFR------TMWE 75 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~--~~~~~---~~~t~~~~~~~~~~---~~~~~~~~D~~g~~~~~------~~~~ 75 (177)
.+..-|.++|++++|||+|+|++++. .+... ...|.++-...... .+..+.++||+|..... ....
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 34567899999999999999999987 54322 23345544444333 35789999999954321 1112
Q ss_pred HHhcC--CCEEEEEEeCCCC
Q 030429 76 RYCRG--VSAILYVVDAADR 93 (177)
Q Consensus 76 ~~~~~--~d~~i~v~d~~~~ 93 (177)
..+.. ++++++..+.+..
T Consensus 85 ~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 85 FALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHHhCEEEEeccCccc
Confidence 22333 7899988887554
No 366
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.74 E-value=8.4e-08 Score=70.86 Aligned_cols=154 Identities=19% Similarity=0.250 Sum_probs=95.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC------------------CCCCCccceeEEEEE--------------------
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYS------------------EDMIPTVGFNMRKVT-------------------- 53 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~------------------~~~~~t~~~~~~~~~-------------------- 53 (177)
.++|+++|...+|||||+-.|.++... ....+..+-++..++
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 589999999999999999888754321 111222222222211
Q ss_pred ---eCCEEEEEEecCCchhhHHhHHHHhcC--CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 54 ---KGNVTIKLWDLGGQRRFRTMWERYCRG--VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 54 ---~~~~~~~~~D~~g~~~~~~~~~~~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
....-+.++|++|+++|-......+.+ .|...+++-++..- ....+..+.-.+ ....|+++|+||+|..+
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgLAL----aL~VPVfvVVTKIDMCP 287 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGLAL----ALHVPVFVVVTKIDMCP 287 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhhhh----hhcCcEEEEEEeeccCc
Confidence 112357789999999997655444433 57888888765431 111122222221 23799999999999988
Q ss_pred ccCHHHHHHHhCc-------------------------ccccCCceeEEEeeecCCCChHHHHHHHH
Q 030429 129 ALSKQALVDQLGL-------------------------ESITDREVCCYMISCKDSINIDAVIDWLI 170 (177)
Q Consensus 129 ~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 170 (177)
....++..+.+.. .+...+-+|+|.+|--+|.|++.|..+|.
T Consensus 288 ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFLN 354 (641)
T KOG0463|consen 288 ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFLN 354 (641)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHHh
Confidence 6555443333211 11223467899999999999988876654
No 367
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=6.1e-09 Score=77.06 Aligned_cols=160 Identities=18% Similarity=0.164 Sum_probs=101.7
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhc---------------------------------CCCCCCCCCccceeEEEEEe
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIAT---------------------------------GGYSEDMIPTVGFNMRKVTK 54 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~---------------------------------~~~~~~~~~t~~~~~~~~~~ 54 (177)
.++..++++++|....||||+-..+.. ..-.+....|.+.....++.
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt 154 (501)
T KOG0459|consen 75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET 154 (501)
T ss_pred CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence 457889999999999999999877761 01123333466666666777
Q ss_pred CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCC---CCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc-
Q 030429 55 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAAD---RDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL- 130 (177)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~- 130 (177)
...++++.|.||+..|...+..-..++|..++|+++-- ...|+.--+............-...++++||+|-+...
T Consensus 155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnW 234 (501)
T KOG0459|consen 155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 234 (501)
T ss_pred cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCc
Confidence 88899999999999998877777888999999999822 11222110000001011111235678889999975421
Q ss_pred ---CH----HHHHHHhCccccc-CCceeEEEeeecCCCChHHHHH
Q 030429 131 ---SK----QALVDQLGLESIT-DREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 131 ---~~----~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
.. +++...+....+. .....++++|..+|.++++..+
T Consensus 235 s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 235 SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 11 2333333322222 2345789999999999987653
No 368
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.72 E-value=8.8e-08 Score=69.65 Aligned_cols=83 Identities=23% Similarity=0.373 Sum_probs=56.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEEeC-----------------CEEEEEEecCCchhh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKG-----------------NVTIKLWDLGGQRRF 70 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~-----------------~~~~~~~D~~g~~~~ 70 (177)
.++++++|+|.|+||||||+|.+..........| |++.....+... ...++++|++|--+.
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 3678999999999999999999997665544333 444444443321 256889999983221
Q ss_pred -------HHhHHHHhcCCCEEEEEEeCCC
Q 030429 71 -------RTMWERYCRGVSAILYVVDAAD 92 (177)
Q Consensus 71 -------~~~~~~~~~~~d~~i~v~d~~~ 92 (177)
-+..-..++.+|+++.|+++..
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEecC
Confidence 1222334777999999998854
No 369
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.72 E-value=8.8e-08 Score=62.62 Aligned_cols=79 Identities=15% Similarity=0.116 Sum_probs=49.9
Q ss_pred HHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEe
Q 030429 75 ERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMI 154 (177)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (177)
...+..+|++++|+|+.++.+... ..+...+.... .++|+++|+||+|+.+.+...++.+.+... ...++++
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~--~~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~~~~-----~~~ii~i 77 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRP--PDLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYFKKE-----GIVVVFF 77 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCC--HHHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHHHhc-----CCeEEEE
Confidence 456788999999999988754331 12222222211 468999999999997644333333333221 2368899
Q ss_pred eecCCCC
Q 030429 155 SCKDSIN 161 (177)
Q Consensus 155 Sa~~~~~ 161 (177)
||+++.+
T Consensus 78 Sa~~~~~ 84 (141)
T cd01857 78 SALKENA 84 (141)
T ss_pred EecCCCc
Confidence 9988764
No 370
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=1.1e-08 Score=79.21 Aligned_cols=113 Identities=19% Similarity=0.171 Sum_probs=76.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC--------CC------------CCCCCCccceeEEEEEeCCEEEEEEecCCchhh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATG--------GY------------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF 70 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~--------~~------------~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 70 (177)
+.-+|.+.-.-.+||||+.++.+-- .+ .+...-|+..--..+.+.+++++++||||+-+|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 4567888889999999999998710 00 011111222222224456899999999999999
Q ss_pred HHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 71 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
.......++-.|.+++|+|+...-.- .....|..+.. .++|.+.++||.|...
T Consensus 118 T~EVeRALrVlDGaVlvl~aV~GVqs-Qt~tV~rQ~~r----y~vP~i~FiNKmDRmG 170 (721)
T KOG0465|consen 118 TFEVERALRVLDGAVLVLDAVAGVES-QTETVWRQMKR----YNVPRICFINKMDRMG 170 (721)
T ss_pred EEEehhhhhhccCeEEEEEcccceeh-hhHHHHHHHHh----cCCCeEEEEehhhhcC
Confidence 88888889999999999998543211 11223333333 4899999999999643
No 371
>PRK14974 cell division protein FtsY; Provisional
Probab=98.70 E-value=7.5e-08 Score=71.37 Aligned_cols=140 Identities=17% Similarity=0.231 Sum_probs=75.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc----CCCC-----CCCC------------CccceeEEEE-----------------
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT----GGYS-----EDMI------------PTVGFNMRKV----------------- 52 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~----~~~~-----~~~~------------~t~~~~~~~~----------------- 52 (177)
++..|+++|++|+||||++..+.. .... .+.. ...+......
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 467899999999999998777762 1110 0000 0111111110
Q ss_pred EeCCEEEEEEecCCchhhH----HhHHHH--hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 030429 53 TKGNVTIKLWDLGGQRRFR----TMWERY--CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 126 (177)
Q Consensus 53 ~~~~~~~~~~D~~g~~~~~----~~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~ 126 (177)
...++++.++||+|..... ..+... ....|.+++|+|++.... .......+... -..--+++||.|.
T Consensus 219 ~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d---~~~~a~~f~~~----~~~~giIlTKlD~ 291 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND---AVEQAREFNEA----VGIDGVILTKVDA 291 (336)
T ss_pred HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh---HHHHHHHHHhc----CCCCEEEEeeecC
Confidence 1134678999999954322 222222 235788999999965422 22222222111 1224577999998
Q ss_pred ccccC-HHHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 127 SEALS-KQALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 127 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
....- .-.+....+ .|+.+++ +|.+++++..
T Consensus 292 ~~~~G~~ls~~~~~~--------~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 292 DAKGGAALSIAYVIG--------KPILFLG--VGQGYDDLIP 323 (336)
T ss_pred CCCccHHHHHHHHHC--------cCEEEEe--CCCChhhccc
Confidence 65322 222333322 2677776 6888877653
No 372
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.69 E-value=6.1e-08 Score=64.40 Aligned_cols=54 Identities=28% Similarity=0.329 Sum_probs=37.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCC-C--CCCCCccceeEEEEEeCCEEEEEEecCC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGY-S--EDMIPTVGFNMRKVTKGNVTIKLWDLGG 66 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~-~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g 66 (177)
....+++++|.+|+|||||+|++.+... . .....|........ + ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL--D-NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe--c-CCEEEEECCC
Confidence 4568899999999999999999996542 1 22233433333322 2 3578899998
No 373
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.68 E-value=1.2e-07 Score=70.05 Aligned_cols=140 Identities=18% Similarity=0.206 Sum_probs=76.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCC---------CCCCC------------CccceeEEEE----------------
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGY---------SEDMI------------PTVGFNMRKV---------------- 52 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~---------~~~~~------------~t~~~~~~~~---------------- 52 (177)
+..-.++++|++|+||||++..+...-. ..+.. ...+......
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 3567899999999999999999873100 00000 0111111110
Q ss_pred -EeCCEEEEEEecCCchhhHH----hHHHH---h-----cCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEE
Q 030429 53 -TKGNVTIKLWDLGGQRRFRT----MWERY---C-----RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLV 119 (177)
Q Consensus 53 -~~~~~~~~~~D~~g~~~~~~----~~~~~---~-----~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii 119 (177)
...++++.++||||...... .+... + ...+..++|+|++.. ...+.+ ....... -.+.-+
T Consensus 192 ~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~-a~~f~~~----~~~~gi 264 (318)
T PRK10416 192 AKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQ-AKAFHEA----VGLTGI 264 (318)
T ss_pred HHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHH-HHHHHhh----CCCCEE
Confidence 12457899999999543221 11111 1 246788999999753 222222 2222111 134467
Q ss_pred EeeCCCccccc-CHHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 120 LGNKIDKSEAL-SKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 120 v~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
|+||.|..... ..-.+....+ .|+.+++ +|++++++-
T Consensus 265 IlTKlD~t~~~G~~l~~~~~~~--------~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 265 ILTKLDGTAKGGVVFAIADELG--------IPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred EEECCCCCCCccHHHHHHHHHC--------CCEEEEe--CCCChhhCc
Confidence 89999954332 1233333333 2677777 667777664
No 374
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.68 E-value=4.5e-08 Score=72.42 Aligned_cols=54 Identities=24% Similarity=0.374 Sum_probs=37.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEeCCEEEEEEecCCc
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQ 67 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~ 67 (177)
...+++++|-|++|||||||+|.+.... ...+.|.+.+....+. .+.++||||.
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~---~i~LlDtPGi 187 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDD---GIYLLDTPGI 187 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCC---CeEEecCCCc
Confidence 4588999999999999999999976542 1122233333333322 3788999994
No 375
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.67 E-value=1.5e-07 Score=68.12 Aligned_cols=141 Identities=16% Similarity=0.190 Sum_probs=76.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC------CC---CCCCC------------CccceeEEEE----------------
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATG------GY---SEDMI------------PTVGFNMRKV---------------- 52 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~------~~---~~~~~------------~t~~~~~~~~---------------- 52 (177)
...-.|+++|++|+||||.+..+... .. ..+.. ...+......
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~ 149 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQK 149 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 34567889999999999998888621 00 00000 0111111110
Q ss_pred -EeCCEEEEEEecCCchhhHHhH----HH---Hh-----cCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEE
Q 030429 53 -TKGNVTIKLWDLGGQRRFRTMW----ER---YC-----RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLV 119 (177)
Q Consensus 53 -~~~~~~~~~~D~~g~~~~~~~~----~~---~~-----~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii 119 (177)
...++++.++||||........ .. .. ..+|.+++|+|++.. .+... ....+.... .+.-+
T Consensus 150 ~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~~----~~~g~ 222 (272)
T TIGR00064 150 AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEAV----GLTGI 222 (272)
T ss_pred HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhhC----CCCEE
Confidence 1245789999999955432221 11 11 237999999999643 33322 223332221 23467
Q ss_pred EeeCCCcccccC-HHHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 120 LGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 120 v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
|+||.|...... .-.+....+ .|+.+++ +|++++++..
T Consensus 223 IlTKlDe~~~~G~~l~~~~~~~--------~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 223 ILTKLDGTAKGGIILSIAYELK--------LPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred EEEccCCCCCccHHHHHHHHHC--------cCEEEEe--CCCChHhCcc
Confidence 799999755422 233333333 2666666 6666776643
No 376
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.65 E-value=2.5e-08 Score=65.99 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
-.++++|++|||||||+|.|.+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999999965
No 377
>PRK12288 GTPase RsgA; Reviewed
Probab=98.59 E-value=1.2e-07 Score=70.77 Aligned_cols=54 Identities=24% Similarity=0.330 Sum_probs=34.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCC----------CCCCccceeEEEEEeCCEEEEEEecCCchhhH
Q 030429 15 LSLIGLQNAGKTSLVNTIATGGYSE----------DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR 71 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~~~~~~----------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 71 (177)
++|+|.+|||||||+|+|++..... ....|.......+..++ .++||||...+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 7899999999999999998643211 11123333333332232 478999965543
No 378
>PRK13796 GTPase YqeH; Provisional
Probab=98.57 E-value=3.3e-07 Score=69.08 Aligned_cols=99 Identities=23% Similarity=0.270 Sum_probs=58.2
Q ss_pred hhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC-HHHHHHHhCcc--cc
Q 030429 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGLE--SI 144 (177)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~--~~ 144 (177)
+.|...........+++++|+|+.|... .....+..+. .+.|+++|+||+|+.+... .++..+.+... ..
T Consensus 57 ~~~~~~l~~i~~~~~lIv~VVD~~D~~~--s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 57 DDFLKLLNGIGDSDALVVNVVDIFDFNG--SWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHHHhhcccCcEEEEEEECccCCC--chhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhc
Confidence 4555544443333449999999977431 1122222221 2578999999999975322 22222111100 00
Q ss_pred cCCceeEEEeeecCCCChHHHHHHHHHHh
Q 030429 145 TDREVCCYMISCKDSINIDAVIDWLIKHS 173 (177)
Q Consensus 145 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 173 (177)
......++.+||+++.|++++++.+.+..
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 11122588999999999999999997754
No 379
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.56 E-value=6.3e-07 Score=59.73 Aligned_cols=21 Identities=48% Similarity=0.612 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030429 15 LSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~~ 35 (177)
++++|..|+|||||++++...
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 579999999999999999854
No 380
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=2.6e-08 Score=74.39 Aligned_cols=128 Identities=23% Similarity=0.216 Sum_probs=88.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc--------CCCC------------CCCCCccceeEEEEEeCCEEEEEEecCCch
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT--------GGYS------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQR 68 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~--------~~~~------------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 68 (177)
+.+--+|+++..-.+||||...|++- +.+. +..+-|+..--..+++++.+++++||||+-
T Consensus 34 ~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghv 113 (753)
T KOG0464|consen 34 IAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHV 113 (753)
T ss_pred hhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcc
Confidence 34456899999999999999999871 1111 111122222333456789999999999999
Q ss_pred hhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc---CHHHHHHHhCc
Q 030429 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL---SKQALVDQLGL 141 (177)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~---~~~~~~~~~~~ 141 (177)
+|+-.....++-.|+++.|+|++..-.-..+.- +.+....++|.+.++||+|+.... ..+.+.+.++.
T Consensus 114 df~leverclrvldgavav~dasagve~qtltv-----wrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~a 184 (753)
T KOG0464|consen 114 DFRLEVERCLRVLDGAVAVFDASAGVEAQTLTV-----WRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGA 184 (753)
T ss_pred eEEEEHHHHHHHhcCeEEEEeccCCcccceeee-----ehhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCC
Confidence 998888888888999999999987543333322 244444578999999999986532 23455555553
No 381
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.51 E-value=1.2e-06 Score=66.84 Aligned_cols=111 Identities=17% Similarity=0.195 Sum_probs=62.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc------CC---CCCCC------------CCccceeEEEEE----------------
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT------GG---YSEDM------------IPTVGFNMRKVT---------------- 53 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~------~~---~~~~~------------~~t~~~~~~~~~---------------- 53 (177)
.+-.|+++|++||||||++..+.. .. ...+. ....+..+....
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 356799999999999999999862 11 01111 111122222111
Q ss_pred -eCCEEEEEEecCCchhhHH-h---HHHH--hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 030429 54 -KGNVTIKLWDLGGQRRFRT-M---WERY--CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 126 (177)
Q Consensus 54 -~~~~~~~~~D~~g~~~~~~-~---~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~ 126 (177)
..++++.++||||...... . +..+ ....+.+++|+|++....-.+....+.. . -.+.-+|+||.|.
T Consensus 179 ~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~---~----~~~~g~IlTKlD~ 251 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKD---S----VDVGSVIITKLDG 251 (429)
T ss_pred HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHh---c----cCCcEEEEECccC
Confidence 1257899999999543322 1 1221 2346889999998653222222222221 1 2345677999997
Q ss_pred cc
Q 030429 127 SE 128 (177)
Q Consensus 127 ~~ 128 (177)
..
T Consensus 252 ~a 253 (429)
T TIGR01425 252 HA 253 (429)
T ss_pred CC
Confidence 54
No 382
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.51 E-value=1e-06 Score=75.45 Aligned_cols=112 Identities=20% Similarity=0.176 Sum_probs=65.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCC--CC--ccc---eeEEEEEeCCEEEEEEecCC----ch----hhHHhHHHHh-
Q 030429 15 LSLIGLQNAGKTSLVNTIATGGYSEDM--IP--TVG---FNMRKVTKGNVTIKLWDLGG----QR----RFRTMWERYC- 78 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~~~~~~~~--~~--t~~---~~~~~~~~~~~~~~~~D~~g----~~----~~~~~~~~~~- 78 (177)
.+++|++|+||||++++- +-.++-.. .. +.+ ......-.. -+-.++||+| ++ .....|..++
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~-~~avliDtaG~y~~~~~~~~~~~~~W~~fL~ 191 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFT-DEAVLIDTAGRYTTQDSDPEEDAAAWLGFLG 191 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEec-CCEEEEcCCCccccCCCcccccHHHHHHHHH
Confidence 489999999999999987 33332211 00 101 010111111 2445889999 11 2233344432
Q ss_pred --------cCCCEEEEEEeCCCCCC--H-------HHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030429 79 --------RGVSAILYVVDAADRDS--V-------PIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 79 --------~~~d~~i~v~d~~~~~~--~-------~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 129 (177)
+..++||+++|+++--. - ..++..+.++..... ...|+.+++||+|+...
T Consensus 192 ~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg-~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 192 LLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLG-ARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecchhhcC
Confidence 34799999999965321 1 233445555544433 47999999999999864
No 383
>PRK12289 GTPase RsgA; Reviewed
Probab=98.48 E-value=3.2e-07 Score=68.57 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~ 35 (177)
.++|+|++|+|||||+|+|.+.
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~ 195 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPD 195 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCc
Confidence 3799999999999999999854
No 384
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.45 E-value=1.2e-06 Score=62.38 Aligned_cols=122 Identities=15% Similarity=0.210 Sum_probs=72.1
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC----ccceeEEE--EEeCC--EEEEEEecCC-----------
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIP----TVGFNMRK--VTKGN--VTIKLWDLGG----------- 66 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~----t~~~~~~~--~~~~~--~~~~~~D~~g----------- 66 (177)
+...--.++|+.+|.+|.|||||++.|.+..+.....+ +......+ +.-.+ ..+.++||.|
T Consensus 36 sv~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Sy 115 (406)
T KOG3859|consen 36 SVSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSY 115 (406)
T ss_pred HHhcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCccccc
Confidence 33444568999999999999999999998887666544 33322222 22334 4677899998
Q ss_pred -------chhhHHhHHH---------HhcC--CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 67 -------QRRFRTMWER---------YCRG--VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 67 -------~~~~~~~~~~---------~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
+.+|..-... .+++ .++++|.+..+.- ++..+.-....-+. .+..+|-|+.|+|...
T Consensus 116 k~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-~LKslDLvtmk~Ld----skVNIIPvIAKaDtis 190 (406)
T KOG3859|consen 116 KPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-SLKSLDLVTMKKLD----SKVNIIPVIAKADTIS 190 (406)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-chhHHHHHHHHHHh----hhhhhHHHHHHhhhhh
Confidence 1122211111 1233 4678888776432 23332222222112 3567788889999876
Q ss_pred ccCH
Q 030429 129 ALSK 132 (177)
Q Consensus 129 ~~~~ 132 (177)
..+.
T Consensus 191 K~eL 194 (406)
T KOG3859|consen 191 KEEL 194 (406)
T ss_pred HHHH
Confidence 5443
No 385
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.45 E-value=6e-07 Score=64.07 Aligned_cols=54 Identities=19% Similarity=0.175 Sum_probs=35.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC----------CCCCccceeEEEEEeCCEEEEEEecCCchhh
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSE----------DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF 70 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~----------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 70 (177)
-.++++|++|+|||||+|++.+..... ....|........ .+ ..++||||-..+
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--HG--GLIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--CC--cEEEeCCCcccc
Confidence 367999999999999999998643211 1123444444444 22 267899995443
No 386
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.45 E-value=2.3e-06 Score=58.57 Aligned_cols=112 Identities=17% Similarity=0.199 Sum_probs=61.2
Q ss_pred EEEEEecCCchhhHH------hHHHHhcC---CCEEEEEEeCCCC-CC---HHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 030429 58 TIKLWDLGGQRRFRT------MWERYCRG---VSAILYVVDAADR-DS---VPIARSELHELLMKPSLSGIPLLVLGNKI 124 (177)
Q Consensus 58 ~~~~~D~~g~~~~~~------~~~~~~~~---~d~~i~v~d~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~iiv~nK~ 124 (177)
.+.++|+|||-.... ....++++ --++++++|..-- ++ +..+..-+..+... ..|.|=|++|.
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~l----E~P~INvlsKM 174 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISL----EVPHINVLSKM 174 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHh----cCcchhhhhHH
Confidence 577889999754322 12223333 2356667765210 11 22223333333333 68999999999
Q ss_pred CcccccCHHHHHHHhCccccc---------------------------CCceeEEEeeecCCCChHHHHHHHHHHh
Q 030429 125 DKSEALSKQALVDQLGLESIT---------------------------DREVCCYMISCKDSINIDAVIDWLIKHS 173 (177)
Q Consensus 125 D~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 173 (177)
|+.....++++.+.+.-.... ..-+.|++....+.+.++.++..|-..+
T Consensus 175 DLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~ai 250 (273)
T KOG1534|consen 175 DLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAI 250 (273)
T ss_pred HHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHH
Confidence 998775555544444311110 0124566666667777777777766544
No 387
>PRK01889 GTPase RsgA; Reviewed
Probab=98.44 E-value=2.4e-06 Score=64.21 Aligned_cols=84 Identities=17% Similarity=0.180 Sum_probs=55.7
Q ss_pred hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeec
Q 030429 78 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCK 157 (177)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (177)
..+.|.+++|+++..+-....+...+..... .+++.++|+||+|+.+.. ++..+.+... ..+.+++.+|++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~~--~~~~~~~~~~---~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCEDA--EEKIAEVEAL---APGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCCH--HHHHHHHHHh---CCCCcEEEEECC
Confidence 5678999999999643333344444444333 366778899999997642 2222222211 234578999999
Q ss_pred CCCChHHHHHHHH
Q 030429 158 DSINIDAVIDWLI 170 (177)
Q Consensus 158 ~~~~i~~l~~~l~ 170 (177)
++.|+++|.++|.
T Consensus 181 ~g~gl~~L~~~L~ 193 (356)
T PRK01889 181 DGEGLDVLAAWLS 193 (356)
T ss_pred CCccHHHHHHHhh
Confidence 9999999998874
No 388
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.43 E-value=4.8e-07 Score=65.36 Aligned_cols=54 Identities=20% Similarity=0.274 Sum_probs=34.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC----------CCCCCCCccceeEEEEEeCCEEEEEEecCCchhh
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGG----------YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF 70 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~----------~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 70 (177)
..+++|++|+|||||+|+|.... .......|.......+..++ .++||||...+
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~ 229 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSL 229 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCcc
Confidence 56899999999999999998532 11223334444444443333 35699995544
No 389
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.43 E-value=6.1e-07 Score=59.09 Aligned_cols=58 Identities=14% Similarity=0.178 Sum_probs=34.5
Q ss_pred CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCC
Q 030429 56 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125 (177)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D 125 (177)
++++.++||+|..... ..++..+|.++++...+--+.+.-.+ ..+. ...-++++||+|
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~k---~~~~------~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAIK---AGIM------EIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHhh---hhHh------hhcCEEEEeCCC
Confidence 5788999998854322 23677799888888764211121111 1111 233478899997
No 390
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.38 E-value=1.7e-07 Score=64.61 Aligned_cols=110 Identities=16% Similarity=0.187 Sum_probs=58.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC----C----------CCCC-------CCCccceeEEEE-----------------Ee
Q 030429 13 MELSLIGLQNAGKTSLVNTIATG----G----------YSED-------MIPTVGFNMRKV-----------------TK 54 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~----~----------~~~~-------~~~t~~~~~~~~-----------------~~ 54 (177)
..|+++|++||||||.+-++... . +... +....++..... ..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 36899999999999999888621 0 0000 001112222211 12
Q ss_pred CCEEEEEEecCCchhhHH----hHHHH--hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 55 GNVTIKLWDLGGQRRFRT----MWERY--CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
+++++.++||+|...... .+..+ ....+-+++|.+++.. .+.+. ......... + +-=+++||.|-..
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~--~~~~~-~~~~~~~~~---~-~~~lIlTKlDet~ 154 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMG--QEDLE-QALAFYEAF---G-IDGLILTKLDETA 154 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGG--GHHHH-HHHHHHHHS---S-TCEEEEESTTSSS
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccC--hHHHH-HHHHHhhcc---c-CceEEEEeecCCC
Confidence 347789999999443321 22221 1257889999999664 22322 222222221 1 2235699999755
Q ss_pred c
Q 030429 129 A 129 (177)
Q Consensus 129 ~ 129 (177)
.
T Consensus 155 ~ 155 (196)
T PF00448_consen 155 R 155 (196)
T ss_dssp T
T ss_pred C
Confidence 3
No 391
>PRK13796 GTPase YqeH; Provisional
Probab=98.37 E-value=8e-07 Score=67.03 Aligned_cols=24 Identities=29% Similarity=0.602 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..++.++|.+|||||||+|++...
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKE 183 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhh
Confidence 458999999999999999999853
No 392
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.33 E-value=7.6e-07 Score=68.07 Aligned_cols=53 Identities=23% Similarity=0.288 Sum_probs=40.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEEeCCEEEEEEecCC
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGG 66 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g 66 (177)
..+.|+++|-|+|||||+||+|.+.+. ....+.|..+++..++ -.+.++||||
T Consensus 313 ~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls---~~v~LCDCPG 368 (562)
T KOG1424|consen 313 DVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS---PSVCLCDCPG 368 (562)
T ss_pred ceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC---CCceecCCCC
Confidence 358999999999999999999997763 3334445556666544 3567889999
No 393
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.33 E-value=9.6e-07 Score=66.49 Aligned_cols=24 Identities=29% Similarity=0.623 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..++.++|.+|+|||||+|++.+.
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~ 177 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQ 177 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhh
Confidence 358999999999999999999864
No 394
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.33 E-value=1.6e-06 Score=58.56 Aligned_cols=67 Identities=19% Similarity=0.185 Sum_probs=38.7
Q ss_pred CEEEEEEecCCchhhH----HhHHHH--hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030429 56 NVTIKLWDLGGQRRFR----TMWERY--CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 56 ~~~~~~~D~~g~~~~~----~~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 129 (177)
+..+.++|+||..... ...... ....+.+++|+|+.... ........+.... + ..-+|.||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---~~~~~~~~~~~~~---~-~~~viltk~D~~~~ 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---DAVNQAKAFNEAL---G-ITGVILTKLDGDAR 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---HHHHHHHHHHhhC---C-CCEEEEECCcCCCC
Confidence 4668889999964322 111221 23489999999986432 2223333332221 1 24567799997654
No 395
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.33 E-value=6.4e-07 Score=60.89 Aligned_cols=119 Identities=18% Similarity=0.248 Sum_probs=63.3
Q ss_pred EEEEcCCCCCHHHHHHHHhc-C---C--------CCCC-----CCCccceeEEEEEe---------------------C-
Q 030429 15 LSLIGLQNAGKTSLVNTIAT-G---G--------YSED-----MIPTVGFNMRKVTK---------------------G- 55 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~-~---~--------~~~~-----~~~t~~~~~~~~~~---------------------~- 55 (177)
+++.|..|||||||+++++. . . +... .....+.....+.. .
T Consensus 3 ~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~~ 82 (178)
T PF02492_consen 3 IIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREYE 82 (178)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCCH
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhcC
Confidence 68899999999999999993 1 0 0000 00111222333221 2
Q ss_pred -CEEEEEEecCCchhhHHhH--H---HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030429 56 -NVTIKLWDLGGQRRFRTMW--E---RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 56 -~~~~~~~D~~g~~~~~~~~--~---~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 129 (177)
..+..++++.|...-.... . ...-..+.++.|+|+.+-.........+...+... =++++||+|+.+.
T Consensus 83 ~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A------DvIvlnK~D~~~~ 156 (178)
T PF02492_consen 83 ERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFA------DVIVLNKIDLVSD 156 (178)
T ss_dssp GC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-------SEEEEE-GGGHHH
T ss_pred CCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhc------CEEEEeccccCCh
Confidence 3466777888844433331 0 01223689999999965322333333444443332 2788999999887
Q ss_pred cCH-HHHHHHh
Q 030429 130 LSK-QALVDQL 139 (177)
Q Consensus 130 ~~~-~~~~~~~ 139 (177)
+.. +.+.+.+
T Consensus 157 ~~~i~~~~~~i 167 (178)
T PF02492_consen 157 EQKIERVREMI 167 (178)
T ss_dssp H--HHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 532 4444433
No 396
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.32 E-value=4.4e-06 Score=62.79 Aligned_cols=121 Identities=15% Similarity=0.136 Sum_probs=64.1
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCC---C--------CC------------CccceeEEEEE-----------
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSE---D--------MI------------PTVGFNMRKVT----------- 53 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~---~--------~~------------~t~~~~~~~~~----------- 53 (177)
...+.-.++++|++|+||||++..+....... . .. ...+.......
T Consensus 133 ~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~ 212 (374)
T PRK14722 133 LMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE 212 (374)
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH
Confidence 44556789999999999999999997421100 0 00 00112222211
Q ss_pred eCCEEEEEEecCCchhhHHhHH---HHh---cCCCEEEEEEeCCCC-CCHHHHHHHHHHHHcCCCCC-CCcEEEEeeCCC
Q 030429 54 KGNVTIKLWDLGGQRRFRTMWE---RYC---RGVSAILYVVDAADR-DSVPIARSELHELLMKPSLS-GIPLLVLGNKID 125 (177)
Q Consensus 54 ~~~~~~~~~D~~g~~~~~~~~~---~~~---~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~iiv~nK~D 125 (177)
..+..+.++||+|......... ..+ ....-.++|++++.. +...+....+.......... ..+-=+|+||.|
T Consensus 213 l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlD 292 (374)
T PRK14722 213 LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLD 292 (374)
T ss_pred hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccc
Confidence 2356889999999553322221 122 224566889998764 33333333343332111000 012346689999
Q ss_pred ccc
Q 030429 126 KSE 128 (177)
Q Consensus 126 ~~~ 128 (177)
-..
T Consensus 293 Et~ 295 (374)
T PRK14722 293 EAS 295 (374)
T ss_pred cCC
Confidence 754
No 397
>PRK10867 signal recognition particle protein; Provisional
Probab=98.31 E-value=2.6e-06 Score=65.33 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=19.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
..+..|+++|++||||||++-.+.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHH
Confidence 346789999999999999766665
No 398
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.31 E-value=2.9e-05 Score=57.48 Aligned_cols=133 Identities=17% Similarity=0.143 Sum_probs=74.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC----------------C-CCCCCccceeEEEEEe----------------------C
Q 030429 15 LSLIGLQNAGKTSLVNTIATGGY----------------S-EDMIPTVGFNMRKVTK----------------------G 55 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~~~~----------------~-~~~~~t~~~~~~~~~~----------------------~ 55 (177)
.++.|.=|||||||+++++...- . .......+....++.. +
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~ 83 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD 83 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence 47889999999999999984321 1 1112222222333221 2
Q ss_pred CEEEEEEecCCchhhHHhHHHHhc--------CCCEEEEEEeCCCCCCHHH-HHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 030429 56 NVTIKLWDLGGQRRFRTMWERYCR--------GVSAILYVVDAADRDSVPI-ARSELHELLMKPSLSGIPLLVLGNKIDK 126 (177)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~iiv~nK~D~ 126 (177)
.....++++.|-..-......+.. ..|.++-|+|+..-..... .......-+.. -=++++||.|+
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~------AD~ivlNK~Dl 157 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF------ADVIVLNKTDL 157 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh------CcEEEEecccC
Confidence 245667788885544333333322 2478999999866322221 22222222222 23788999999
Q ss_pred ccccCHHHHHHHhCcccccCCceeEEEeee
Q 030429 127 SEALSKQALVDQLGLESITDREVCCYMISC 156 (177)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (177)
.+.+..+.+.+.++. .++.++++.+|.
T Consensus 158 v~~~~l~~l~~~l~~---lnp~A~i~~~~~ 184 (323)
T COG0523 158 VDAEELEALEARLRK---LNPRARIIETSY 184 (323)
T ss_pred CCHHHHHHHHHHHHH---hCCCCeEEEccc
Confidence 987654444444432 234446777776
No 399
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.27 E-value=3.4e-06 Score=64.62 Aligned_cols=79 Identities=16% Similarity=0.071 Sum_probs=42.0
Q ss_pred CCEEEEEEecCCchhh----HHhHHH--HhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 55 GNVTIKLWDLGGQRRF----RTMWER--YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 55 ~~~~~~~~D~~g~~~~----~~~~~~--~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
.++++.++||||.... ...... ..-..+.+++|+|++.. .+.......+.... ...=+|+||.|...
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v----~i~giIlTKlD~~~ 253 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL----GLTGVVLTKLDGDA 253 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC----CCCEEEEeCccCcc
Confidence 3467899999994322 111111 12347889999998643 33333333332221 12346699999543
Q ss_pred -ccCHHHHHHHhC
Q 030429 129 -ALSKQALVDQLG 140 (177)
Q Consensus 129 -~~~~~~~~~~~~ 140 (177)
.-....+....+
T Consensus 254 ~~G~~lsi~~~~~ 266 (428)
T TIGR00959 254 RGGAALSVRSVTG 266 (428)
T ss_pred cccHHHHHHHHHC
Confidence 222344444444
No 400
>PRK00098 GTPase RsgA; Reviewed
Probab=98.22 E-value=3.6e-06 Score=61.85 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGG 36 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~ 36 (177)
..++++|++|+|||||+|++.+..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 468999999999999999998543
No 401
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.22 E-value=1.9e-05 Score=58.44 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
-.++.|.-|||||||+|+++.
T Consensus 6 v~iltGFLGaGKTTll~~ll~ 26 (318)
T PRK11537 6 VTLLTGFLGAGKTTLLRHILN 26 (318)
T ss_pred EEEEEECCCCCHHHHHHHHHh
Confidence 357889999999999999984
No 402
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.21 E-value=4.1e-06 Score=61.24 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGG 36 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~ 36 (177)
-.++++|++|+|||||+|.+.+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchh
Confidence 578999999999999999998643
No 403
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.21 E-value=1.2e-05 Score=60.44 Aligned_cols=111 Identities=15% Similarity=0.190 Sum_probs=63.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccc-----------------------eeEEEE-----------EeCC
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG-----------------------FNMRKV-----------TKGN 56 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~-----------------------~~~~~~-----------~~~~ 56 (177)
+.-.|.++||+||||||-+-.|...-.........+ .+...+ ...+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 366889999999999999888863222111112222 111111 1245
Q ss_pred EEEEEEecCCchhh----HHhHHHHhcC--CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 57 VTIKLWDLGGQRRF----RTMWERYCRG--VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 57 ~~~~~~D~~g~~~~----~~~~~~~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
+++.++||.|...+ ...+..++.. ..-+.+|++++.. ...+...+..+... ... =+++||.|-..
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~----~i~-~~I~TKlDET~ 352 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLF----PID-GLIFTKLDETT 352 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccC----Ccc-eeEEEcccccC
Confidence 78999999995433 2333444433 3566777887653 45555555544222 222 24589999644
No 404
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.17 E-value=4.9e-06 Score=62.69 Aligned_cols=112 Identities=18% Similarity=0.123 Sum_probs=61.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC----CC-----CCCCC------------CccceeEEEEE--------------eC
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATG----GY-----SEDMI------------PTVGFNMRKVT--------------KG 55 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~----~~-----~~~~~------------~t~~~~~~~~~--------------~~ 55 (177)
..-.|+++|++||||||++..|... .. ..+.. ...++...... ..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 3468999999999999999999621 00 01000 01122222110 01
Q ss_pred CEEEEEEecCCchhhH----HhHHHHh--cCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030429 56 NVTIKLWDLGGQRRFR----TMWERYC--RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 56 ~~~~~~~D~~g~~~~~----~~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 129 (177)
++++.++||+|..... ..+...+ ...+.+++|+|++.. ...+......+.. -..-=+++||.|-...
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~-----~~idglI~TKLDET~k 392 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----IHIDGIVFTKFDETAS 392 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcC-----CCCCEEEEEcccCCCC
Confidence 4688999999953321 1122222 235778999988543 2333333333321 1123466999997553
No 405
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.17 E-value=0.00014 Score=55.14 Aligned_cols=23 Identities=13% Similarity=0.479 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+=|+++||..+|||||++||..
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMe 39 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFME 39 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHH
Confidence 46689999999999999999973
No 406
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.13 E-value=1.5e-05 Score=60.86 Aligned_cols=112 Identities=16% Similarity=0.108 Sum_probs=60.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCC-----CC------CC------------CCccceeEEEE-----------EeC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGY-----SE------DM------------IPTVGFNMRKV-----------TKG 55 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~-----~~------~~------------~~t~~~~~~~~-----------~~~ 55 (177)
...-.++++|++|+||||++..+.+... .. +. ....++..... ...
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~ 268 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELR 268 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhc
Confidence 3456899999999999999998864210 00 00 00111111110 123
Q ss_pred CEEEEEEecCCchhhH----HhHHHHh--cCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 56 NVTIKLWDLGGQRRFR----TMWERYC--RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 56 ~~~~~~~D~~g~~~~~----~~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
+..+.++||+|..... .....+. ....-.++|+|++.. ...+......+.. -..-=+++||.|-..
T Consensus 269 ~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~-----~~~~~~I~TKlDEt~ 340 (420)
T PRK14721 269 GKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQG-----HGIHGCIITKVDEAA 340 (420)
T ss_pred CCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcC-----CCCCEEEEEeeeCCC
Confidence 4678899999954322 2222221 224567899998643 3344443333311 112335689999654
No 407
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.11 E-value=2.9e-05 Score=60.70 Aligned_cols=112 Identities=18% Similarity=0.230 Sum_probs=60.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC--------CC---CCCCC------------CccceeEEEEE-----------eC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATG--------GY---SEDMI------------PTVGFNMRKVT-----------KG 55 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~--------~~---~~~~~------------~t~~~~~~~~~-----------~~ 55 (177)
+..-.|+|+|++|+||||++..|... .+ ..+.. ...++.+.... ..
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 45668899999999999999888631 00 00000 01112222211 23
Q ss_pred CEEEEEEecCCchhhHHhHHH---Hhc--CCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 56 NVTIKLWDLGGQRRFRTMWER---YCR--GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~---~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
++++.++||+|.......... .+. .....++|++.+. +.......+..+.. ..+.-+|+||+|...
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~ 498 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETG 498 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCcc
Confidence 578899999995432211110 011 1235677777753 34444444433322 235668899999744
No 408
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.07 E-value=9.7e-05 Score=55.65 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=22.0
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
.....-.++++|+.||||||++..+.
T Consensus 202 ~~~~~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 202 DLSNHRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred eecCCeEEEEECCCCCCHHHHHHHHH
Confidence 34456678999999999999999987
No 409
>PRK13695 putative NTPase; Provisional
Probab=98.04 E-value=0.00032 Score=47.47 Aligned_cols=21 Identities=43% Similarity=0.639 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030429 13 MELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~ 33 (177)
++|+++|++|+|||||+..+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~ 21 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIA 21 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999865
No 410
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.03 E-value=9e-05 Score=56.27 Aligned_cols=111 Identities=14% Similarity=0.153 Sum_probs=61.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCC-------------CCC------------CCCccceeEEEE-----------Ee
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGY-------------SED------------MIPTVGFNMRKV-----------TK 54 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~-------------~~~------------~~~t~~~~~~~~-----------~~ 54 (177)
.+-.|+++|++|+||||.+..+...-. ..+ +....+..+... ..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 346899999999999999988863100 000 001112222211 12
Q ss_pred CCEEEEEEecCCchhhH----HhHHHHhcC---CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030429 55 GNVTIKLWDLGGQRRFR----TMWERYCRG---VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127 (177)
Q Consensus 55 ~~~~~~~~D~~g~~~~~----~~~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 127 (177)
.++.+.++||+|..... ......+.. ..-.++|+|++.. ...+...+...... .+-=+++||.|-.
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~-----~~~~~I~TKlDet 325 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF-----SYKTVIFTKLDET 325 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC-----CCCEEEEEeccCC
Confidence 45789999999943321 122233332 2368899999764 34444444443211 1234669999975
Q ss_pred c
Q 030429 128 E 128 (177)
Q Consensus 128 ~ 128 (177)
.
T Consensus 326 ~ 326 (388)
T PRK12723 326 T 326 (388)
T ss_pred C
Confidence 4
No 411
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.02 E-value=5.2e-06 Score=53.80 Aligned_cols=32 Identities=25% Similarity=0.443 Sum_probs=28.6
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+.++..+..-.++|+|+.|||||||++.+.+
T Consensus 2 ~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g 33 (137)
T PF00005_consen 2 KNVSLEIKPGEIVAIVGPNGSGKSTLLKALAG 33 (137)
T ss_dssp EEEEEEEETTSEEEEEESTTSSHHHHHHHHTT
T ss_pred CceEEEEcCCCEEEEEccCCCccccceeeecc
Confidence 46778888889999999999999999999973
No 412
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.01 E-value=8e-06 Score=56.29 Aligned_cols=31 Identities=26% Similarity=0.394 Sum_probs=27.8
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
+.+++...+.-.++++|++|||||||++.+.
T Consensus 19 kgi~l~v~~Gevv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 19 KGISLSVEKGEVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred cCcceeEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 4567788888899999999999999999997
No 413
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.01 E-value=1.6e-05 Score=61.22 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=21.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
..+..|+++|++|+||||++..+.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHH
Confidence 356789999999999999998886
No 414
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.01 E-value=2.3e-05 Score=59.68 Aligned_cols=110 Identities=16% Similarity=0.180 Sum_probs=59.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC-C---------CCCCC------------CccceeEEEE----------EeCCEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGG-Y---------SEDMI------------PTVGFNMRKV----------TKGNVTI 59 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~-~---------~~~~~------------~t~~~~~~~~----------~~~~~~~ 59 (177)
...++++|++||||||++.+|.... . ..+.. ...+...... ...++++
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 4568899999999999999997311 0 00000 0111222211 1146788
Q ss_pred EEEecCCchhh-H---HhHHHHhc-----CCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 60 KLWDLGGQRRF-R---TMWERYCR-----GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 60 ~~~D~~g~~~~-~---~~~~~~~~-----~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
.++||+|.... . ..+..++. ...-.++|+|++.. ...+....... .. -.+-=+|+||.|-..
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~--~~~~~~~~~~f-~~----~~~~glIlTKLDEt~ 373 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS--YHHTLTVLKAY-ES----LNYRRILLTKLDEAD 373 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC--HHHHHHHHHHh-cC----CCCCEEEEEcccCCC
Confidence 99999995321 1 12222222 23468899998664 33333333332 21 122346699999754
No 415
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=98.00 E-value=0.00011 Score=44.31 Aligned_cols=69 Identities=14% Similarity=0.097 Sum_probs=44.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHh-HHHHhcCCCEEEEEEeCCCC
Q 030429 15 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM-WERYCRGVSAILYVVDAADR 93 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-~~~~~~~~d~~i~v~d~~~~ 93 (177)
+++.|.+|+||||+...+...-.. .+.....++ ++.++|+++....... .......+|.++++++.+..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~------~g~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~ 71 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK------RGKRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL 71 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH------CCCeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchh
Confidence 678899999999999888732111 111222222 7888899986543321 14456678999999987544
No 416
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=1.2e-05 Score=59.83 Aligned_cols=97 Identities=19% Similarity=0.306 Sum_probs=55.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc----CC----------CCCC-CC------CccceeEEE-----------------
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT----GG----------YSED-MI------PTVGFNMRK----------------- 51 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~----~~----------~~~~-~~------~t~~~~~~~----------------- 51 (177)
.++--|.++|-.|+||||.+-.+.. .. |... .. .-..+.++.
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~ 178 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR 178 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH
Confidence 4456789999999999999988872 11 1000 00 000111111
Q ss_pred EEeCCEEEEEEecCCchh-hHHhHHH-----HhcCCCEEEEEEeCCCCCCHHHHHHHHHHH
Q 030429 52 VTKGNVTIKLWDLGGQRR-FRTMWER-----YCRGVSAILYVVDAADRDSVPIARSELHEL 106 (177)
Q Consensus 52 ~~~~~~~~~~~D~~g~~~-~~~~~~~-----~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 106 (177)
+..+++++.++||.|-.. ..++..+ -.-..|-+++|.|++-.-.-+....-+.+.
T Consensus 179 fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~ 239 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKET 239 (483)
T ss_pred HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHh
Confidence 223578999999999322 2222222 133579999999997654444444444433
No 417
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.96 E-value=8.4e-06 Score=60.74 Aligned_cols=56 Identities=27% Similarity=0.416 Sum_probs=38.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEeCCEEEEEEecCC
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGNVTIKLWDLGG 66 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~g 66 (177)
.++.++++|+|-|++||||+||+|......... .+.+++. ..+ .-+..+.+.|.||
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg-~~pGvT~smqeV-~Ldk~i~llDsPg 306 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNVG-NVPGVTRSMQEV-KLDKKIRLLDSPG 306 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhccccCC-CCccchhhhhhe-eccCCceeccCCc
Confidence 477899999999999999999999866553221 2222222 222 2234677889999
No 418
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.95 E-value=8.4e-06 Score=51.66 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
.|+|.|++||||||+.+.|..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999984
No 419
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.95 E-value=0.00013 Score=54.67 Aligned_cols=20 Identities=30% Similarity=0.507 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030429 15 LSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~ 34 (177)
.++.|.-|+|||||+++++.
T Consensus 7 ~iltGFLGaGKTTll~~ll~ 26 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQ 26 (341)
T ss_pred EEEEECCCCCHHHHHHHHHh
Confidence 57889999999999999984
No 420
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.94 E-value=8.4e-06 Score=57.34 Aligned_cols=32 Identities=25% Similarity=0.382 Sum_probs=28.1
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..+++.....--|+++|++|||||||++-+.+
T Consensus 20 ~~i~L~v~~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 20 EDINLSVEKGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred ccceeEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45677788888899999999999999999985
No 421
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.94 E-value=2.5e-05 Score=59.06 Aligned_cols=28 Identities=32% Similarity=0.465 Sum_probs=23.5
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
.+..+.+..|+++|-.|+||||.+-.|.
T Consensus 94 ~l~~~~P~vImmvGLQGsGKTTt~~KLA 121 (451)
T COG0541 94 NLAKKPPTVILMVGLQGSGKTTTAGKLA 121 (451)
T ss_pred ccCCCCCeEEEEEeccCCChHhHHHHHH
Confidence 3445677899999999999999988776
No 422
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.94 E-value=1.7e-05 Score=42.75 Aligned_cols=46 Identities=26% Similarity=0.359 Sum_probs=29.2
Q ss_pred hcCCCEEEEEEeCCCCCC--HHHHHHHHHHHHcCCCCCCCcEEEEeeCCC
Q 030429 78 CRGVSAILYVVDAADRDS--VPIARSELHELLMKPSLSGIPLLVLGNKID 125 (177)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D 125 (177)
.+-.+++++++|.|..+. .++....+.++.... .++|+++|.||+|
T Consensus 11 ~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D 58 (58)
T PF06858_consen 11 AHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID 58 (58)
T ss_dssp GGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred HhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence 344689999999997654 556566666665543 3799999999998
No 423
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.93 E-value=5.4e-05 Score=61.70 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.--|+++|++|+||||++..+..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 45789999999999999999873
No 424
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=3.9e-05 Score=59.56 Aligned_cols=31 Identities=13% Similarity=0.382 Sum_probs=28.3
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
+-.++..++.-||+|+|.+||||||+++.++
T Consensus 369 ~gvsf~I~kGekVaIvG~nGsGKSTilr~Ll 399 (591)
T KOG0057|consen 369 KGVSFTIPKGEKVAIVGSNGSGKSTILRLLL 399 (591)
T ss_pred cceeEEecCCCEEEEECCCCCCHHHHHHHHH
Confidence 3467889999999999999999999999998
No 425
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.92 E-value=0.00014 Score=52.89 Aligned_cols=88 Identities=18% Similarity=0.168 Sum_probs=61.8
Q ss_pred HhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHH--HHHHhCcccccCCceeEEEe
Q 030429 77 YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQA--LVDQLGLESITDREVCCYMI 154 (177)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 154 (177)
-..+.|-+++|+.+.+|+.-......+..+... .++.-++++||+|+.+.+.... ....+ ..-+.+.+.+
T Consensus 76 ~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y-----~~~gy~v~~~ 147 (301)
T COG1162 76 PVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREY-----EDIGYPVLFV 147 (301)
T ss_pred cccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHH-----HhCCeeEEEe
Confidence 344578889999998887666665555555554 4566677799999988765542 22222 2234478999
Q ss_pred eecCCCChHHHHHHHHHH
Q 030429 155 SCKDSINIDAVIDWLIKH 172 (177)
Q Consensus 155 Sa~~~~~i~~l~~~l~~~ 172 (177)
|++++.+++++.+.+...
T Consensus 148 s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 148 SAKNGDGLEELAELLAGK 165 (301)
T ss_pred cCcCcccHHHHHHHhcCC
Confidence 999999999999887543
No 426
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.91 E-value=0.00014 Score=52.66 Aligned_cols=111 Identities=18% Similarity=0.125 Sum_probs=62.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC----C-----CCC------------CCCccceeEEEE--------------EeCC
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGG----Y-----SED------------MIPTVGFNMRKV--------------TKGN 56 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~----~-----~~~------------~~~t~~~~~~~~--------------~~~~ 56 (177)
.-+++++|++|+||||++..+...- . ..+ +....++..... ...+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence 3699999999999999988876320 0 000 111122222211 0125
Q ss_pred EEEEEEecCCchhhH----HhHHHHh--cCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030429 57 VTIKLWDLGGQRRFR----TMWERYC--RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 57 ~~~~~~D~~g~~~~~----~~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 129 (177)
+++.++||||..... ..+...+ ...+.+++|+|++.. ..........+.. -.+-=+++||.|-...
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~-----~~~~~~I~TKlDet~~ 226 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----IHIDGIVFTKFDETAS 226 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC-----CCCCEEEEEeecCCCC
Confidence 788999999954321 1122222 245678999998642 3344444444321 1233466999997653
No 427
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=9.1e-05 Score=62.91 Aligned_cols=113 Identities=22% Similarity=0.267 Sum_probs=62.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCC--CCC--CCccceeEEEEE-eCCEEEEEEecCC----c----hhhHHhHHHH----
Q 030429 15 LSLIGLQNAGKTSLVNTIATGGYS--EDM--IPTVGFNMRKVT-KGNVTIKLWDLGG----Q----RRFRTMWERY---- 77 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~~~~~--~~~--~~t~~~~~~~~~-~~~~~~~~~D~~g----~----~~~~~~~~~~---- 77 (177)
-+++|++|+||||++..-- ..|+ ... ....+..+...+ .-.-+-.++||.| + +.....|..+
T Consensus 128 y~viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lL 206 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLL 206 (1188)
T ss_pred eEEecCCCCCcchHHhccc-ccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHH
Confidence 3789999999999977642 2221 111 011111122211 1122455779988 2 1223344432
Q ss_pred -----hcCCCEEEEEEeCCCCCC---HH------HHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030429 78 -----CRGVSAILYVVDAADRDS---VP------IARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 78 -----~~~~d~~i~v~d~~~~~~---~~------~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 129 (177)
.+..++||+.+|+++--+ -+ .++..+.++.... ....|+.+++||.|+...
T Consensus 207 kk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL-~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 207 KKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETL-HARLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh-ccCCceEEEEeccccccc
Confidence 345799999999965211 11 2334444543332 246899999999999874
No 428
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.90 E-value=8.9e-05 Score=57.68 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+.--++++|++||||||++..|..
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHH
Confidence 345789999999999999999873
No 429
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.90 E-value=1.1e-05 Score=55.56 Aligned_cols=31 Identities=26% Similarity=0.391 Sum_probs=26.9
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
..+++..+++--.+++||+|||||||++.+.
T Consensus 24 ~~i~l~i~~~~VTAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 24 KDINLDIPKNKVTALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred ccCceeccCCceEEEECCCCcCHHHHHHHHH
Confidence 4567778888888999999999999999986
No 430
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.90 E-value=6.1e-05 Score=52.61 Aligned_cols=48 Identities=27% Similarity=0.350 Sum_probs=31.0
Q ss_pred HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030429 76 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127 (177)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 127 (177)
...+++|.+++|+|.|-+ ++... ..+..+..... -.++.+|.||+|-.
T Consensus 151 g~~~~vD~vivVvDpS~~-sl~ta-eri~~L~~elg--~k~i~~V~NKv~e~ 198 (255)
T COG3640 151 GTIEGVDLVIVVVDPSYK-SLRTA-ERIKELAEELG--IKRIFVVLNKVDEE 198 (255)
T ss_pred ccccCCCEEEEEeCCcHH-HHHHH-HHHHHHHHHhC--CceEEEEEeeccch
Confidence 346679999999998543 23332 23334433322 37899999999965
No 431
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.90 E-value=0.00011 Score=52.68 Aligned_cols=19 Identities=32% Similarity=0.615 Sum_probs=17.8
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030429 15 LSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~ 33 (177)
|+++|.|||||||+.+.+.
T Consensus 2 Ivl~G~pGSGKST~a~~La 20 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELA 20 (249)
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 6899999999999999986
No 432
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.89 E-value=1.2e-05 Score=56.22 Aligned_cols=31 Identities=19% Similarity=0.398 Sum_probs=27.3
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
...++..++.--++|+|++|||||||++-+.
T Consensus 22 ~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig 52 (226)
T COG1136 22 KDVNLEIEAGEFVAIVGPSGSGKSTLLNLLG 52 (226)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3567778888889999999999999999996
No 433
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.88 E-value=0.00048 Score=46.76 Aligned_cols=67 Identities=18% Similarity=0.103 Sum_probs=47.0
Q ss_pred CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 55 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
+.+++.++|+|+.... .....+..+|.+++++..+ ..+.......+..+... +.|+.+|+||+|...
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~~----~~~~~vV~N~~~~~~ 157 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPT-PSGLHDLERAVELVRHF----GIPVGVVINKYDLND 157 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHHc----CCCEEEEEeCCCCCc
Confidence 5688999999975432 2345577899999999986 34566666655544332 467889999999754
No 434
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=9.1e-06 Score=62.46 Aligned_cols=113 Identities=20% Similarity=0.297 Sum_probs=70.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCC------------CCCC--CCCccceeEEE--------------------EEeC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGG------------YSED--MIPTVGFNMRK--------------------VTKG 55 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~------------~~~~--~~~t~~~~~~~--------------------~~~~ 55 (177)
++--++-++-....|||||..+|+... |... -.+..+++... -+.+
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~ 96 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN 96 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence 344578889999999999999998321 1100 00111111111 1123
Q ss_pred CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030429 56 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127 (177)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 127 (177)
+.-++++|.||+-+|.+..-.+++-.|++++|+|.-+.--.+. ...+...+.. +-+| ++++||.|..
T Consensus 97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQT-ETVLrQA~~E---RIkP-vlv~NK~DRA 163 (842)
T KOG0469|consen 97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQAIAE---RIKP-VLVMNKMDRA 163 (842)
T ss_pred ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEech-HHHHHHHHHh---hccc-eEEeehhhHH
Confidence 5678999999999999999999999999999999855321211 1222222222 2345 4569999953
No 435
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.87 E-value=1.6e-05 Score=43.91 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030429 14 ELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~ 33 (177)
..+|.|+.|+|||||+.++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999886
No 436
>PRK08118 topology modulation protein; Reviewed
Probab=97.86 E-value=1.4e-05 Score=53.78 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
+|+|+|++|||||||.+.+..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999973
No 437
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.85 E-value=1.6e-05 Score=53.83 Aligned_cols=31 Identities=19% Similarity=0.332 Sum_probs=28.1
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
.+.++..+..-.++++|+.|||||||++.+.
T Consensus 12 ~~isl~i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 12 QNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4677888899999999999999999999886
No 438
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.85 E-value=3.2e-05 Score=53.92 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=17.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030429 13 MELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~ 33 (177)
+-.+++|||||||||.++-..
T Consensus 3 fgqvVIGPPgSGKsTYc~g~~ 23 (290)
T KOG1533|consen 3 FGQVVIGPPGSGKSTYCNGMS 23 (290)
T ss_pred cceEEEcCCCCCccchhhhHH
Confidence 345899999999999987665
No 439
>PRK07261 topology modulation protein; Provisional
Probab=97.85 E-value=1.5e-05 Score=53.81 Aligned_cols=20 Identities=25% Similarity=0.690 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030429 14 ELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~ 33 (177)
+|+|+|++|||||||.+.+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~ 21 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLS 21 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 79999999999999999986
No 440
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.84 E-value=4.4e-05 Score=55.99 Aligned_cols=111 Identities=19% Similarity=0.270 Sum_probs=62.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC----C----------CCCC-------CCCccceeEEE---------E-------
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATG----G----------YSED-------MIPTVGFNMRK---------V------- 52 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~----~----------~~~~-------~~~t~~~~~~~---------~------- 52 (177)
.++.-|+++|-.|+||||-+-.+... + |... .....+..... +
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 45889999999999999999888720 0 0000 00011111111 0
Q ss_pred -EeCCEEEEEEecCCchhhH-HhH------HHHhcCC-----CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEE
Q 030429 53 -TKGNVTIKLWDLGGQRRFR-TMW------ERYCRGV-----SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLV 119 (177)
Q Consensus 53 -~~~~~~~~~~D~~g~~~~~-~~~------~~~~~~~-----d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii 119 (177)
...++++.++||+|-.... .++ ...+... +-+++++|++....--+..+.+.+.... -=+
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l-------~Gi 289 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGL-------DGI 289 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcCC-------ceE
Confidence 1246889999999933221 111 1223333 3488999998754444445555555333 136
Q ss_pred EeeCCCcc
Q 030429 120 LGNKIDKS 127 (177)
Q Consensus 120 v~nK~D~~ 127 (177)
++||+|..
T Consensus 290 IlTKlDgt 297 (340)
T COG0552 290 ILTKLDGT 297 (340)
T ss_pred EEEecccC
Confidence 79999954
No 441
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.83 E-value=1.8e-05 Score=52.63 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=29.1
Q ss_pred ceeecccccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 2 YLHISLFFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 2 ~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
..++++.....-.++++|++|||||||++.++
T Consensus 19 l~~isl~v~~Ge~iaitGPSG~GKStllk~va 50 (223)
T COG4619 19 LNNISLSVRAGEFIAITGPSGCGKSTLLKIVA 50 (223)
T ss_pred ecceeeeecCCceEEEeCCCCccHHHHHHHHH
Confidence 35778888999999999999999999999997
No 442
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.83 E-value=1.8e-05 Score=56.46 Aligned_cols=32 Identities=19% Similarity=0.326 Sum_probs=28.0
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..--++++|+.|||||||++.+.+
T Consensus 19 ~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 19 DDLSFSIPKGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred ecceEEecCCcEEEEECCCCCCHHHHHHHHhc
Confidence 45677788888899999999999999999984
No 443
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.83 E-value=1.7e-05 Score=53.88 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
.||+|+|+|||||||+..++...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999844
No 444
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.82 E-value=0.00017 Score=55.57 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=58.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC------CCC-----CCCCC------------ccceeEEEE-----------EeCCE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATG------GYS-----EDMIP------------TVGFNMRKV-----------TKGNV 57 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~------~~~-----~~~~~------------t~~~~~~~~-----------~~~~~ 57 (177)
.-.++++|++||||||++-.|... ... .+... ..++..... ...++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 347899999999999988777521 110 00000 011111110 12357
Q ss_pred EEEEEecCCchhhH----HhHHHHhc---CCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 58 TIKLWDLGGQRRFR----TMWERYCR---GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 58 ~~~~~D~~g~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
++.++||||..... ..+..++. ...-+.+|++++.. ...+...+..+... . +--+++||.|-..
T Consensus 301 DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~----~-~~~vI~TKlDet~ 371 (424)
T PRK05703 301 DVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL----P-LDGLIFTKLDETS 371 (424)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC----C-CCEEEEecccccc
Confidence 88999999954332 22333333 23467788888542 33444433333111 1 2247799999754
No 445
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.80 E-value=1.9e-05 Score=51.53 Aligned_cols=19 Identities=32% Similarity=0.566 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030429 15 LSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~ 33 (177)
|+++|+||||||||++.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999997
No 446
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.80 E-value=1.9e-05 Score=55.08 Aligned_cols=32 Identities=34% Similarity=0.387 Sum_probs=27.0
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
.+.++..+.. .++++|+.|+|||||++.+.+-
T Consensus 17 ~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 17 DGVSLTLGPG-MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cceeEEEcCC-cEEEECCCCCCHHHHHHHHhCC
Confidence 3456777778 9999999999999999999843
No 447
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.78 E-value=0.0006 Score=44.39 Aligned_cols=105 Identities=12% Similarity=0.084 Sum_probs=58.0
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCC
Q 030429 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDS 95 (177)
Q Consensus 17 i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~ 95 (177)
.-|.+|+||||+.-.+...-.. ...++.-++.. ....-.+++.++|+|+... ......+..+|.++++.+.+. .+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~-~~~~~~~vd~D~~~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~-~s 80 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAK-LGKRVLLLDADLGLANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEP-TS 80 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEECCCCCCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCCh-hH
Confidence 4468999999997776521000 00000000000 0000017889999997433 223456888999999999743 33
Q ss_pred HHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030429 96 VPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127 (177)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 127 (177)
.......+..+.... ...++.+|+|+++..
T Consensus 81 ~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~~ 110 (139)
T cd02038 81 ITDAYALIKKLAKQL--RVLNFRVVVNRAESP 110 (139)
T ss_pred HHHHHHHHHHHHHhc--CCCCEEEEEeCCCCH
Confidence 444444444443221 345778999999743
No 448
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.78 E-value=3.2e-05 Score=47.73 Aligned_cols=30 Identities=17% Similarity=0.176 Sum_probs=25.3
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
..++..+..-.++++|++|||||||++.+.
T Consensus 7 ~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 7 GVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred eeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 455666777788999999999999999985
No 449
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.77 E-value=0.0004 Score=44.85 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=21.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..-.+++.|++|+|||++++.+...
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3557999999999999999999844
No 450
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.77 E-value=3.6e-05 Score=51.98 Aligned_cols=56 Identities=23% Similarity=0.234 Sum_probs=34.4
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhC
Q 030429 82 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLG 140 (177)
Q Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~ 140 (177)
|++++|+|+.++.+..+ ..+..... ....+.|+++|+||+|+.+.+...++.+.+.
T Consensus 1 DvVl~VvDar~p~~~~~--~~i~~~~~-l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~ 56 (172)
T cd04178 1 DVILEVLDARDPLGCRC--PQVEEAVL-QAGGNKKLVLVLNKIDLVPKENVEKWLKYLR 56 (172)
T ss_pred CEEEEEEECCCCCCCCC--HHHHHHHH-hccCCCCEEEEEehhhcCCHHHHHHHHHHHH
Confidence 78999999977633221 12222211 1113589999999999987655555555543
No 451
>PF05729 NACHT: NACHT domain
Probab=97.74 E-value=0.00034 Score=46.46 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030429 15 LSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~ 34 (177)
++|.|++|+||||++.+++.
T Consensus 3 l~I~G~~G~GKStll~~~~~ 22 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQ 22 (166)
T ss_pred EEEECCCCCChHHHHHHHHH
Confidence 68999999999999999984
No 452
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.74 E-value=3.3e-05 Score=43.94 Aligned_cols=20 Identities=20% Similarity=0.512 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030429 15 LSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~ 34 (177)
|+++|++||||||+.+.+..
T Consensus 2 i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999973
No 453
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.74 E-value=3.1e-05 Score=54.32 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=29.5
Q ss_pred ceeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 2 YLHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 2 ~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
....++.....-.++++|++|||||||.+.+.+
T Consensus 23 l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 23 LNNVSLEIERGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred hcceeEEecCCCEEEEEcCCCCCHHHHHHHHhc
Confidence 356788889999999999999999999999984
No 454
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.72 E-value=0.0013 Score=44.11 Aligned_cols=155 Identities=17% Similarity=0.149 Sum_probs=88.7
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEE-ecCCchhhHHhH-------HHHh
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLW-DLGGQRRFRTMW-------ERYC 78 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~-D~~g~~~~~~~~-------~~~~ 78 (177)
+...+.+-|-+.|.+||||||+.+.+-.. ....+...+-.+.++++-.+. |.+-++.-+..+ ...+
T Consensus 18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~------L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevAkll 91 (197)
T COG0529 18 LKGQKGAVIWFTGLSGSGKSTIANALEEK------LFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVAKLL 91 (197)
T ss_pred HhCCCCeEEEeecCCCCCHHHHHHHHHHH------HHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHHHHH
Confidence 34566788999999999999999998622 233345666677777776666 666644333222 2245
Q ss_pred cCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--ccCHHHHHHHhCcccc------c----C
Q 030429 79 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE--ALSKQALVDQLGLESI------T----D 146 (177)
Q Consensus 79 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~--~~~~~~~~~~~~~~~~------~----~ 146 (177)
.++.++++|-=+|- +...++....++.. -+++=|.-.+++.. ..++.-+.++...-.. . .
T Consensus 92 ~daG~iviva~ISP---~r~~R~~aR~~~~~-----~~FiEVyV~~pl~vce~RDpKGLYkKAr~GeI~~fTGid~pYE~ 163 (197)
T COG0529 92 ADAGLIVIVAFISP---YREDRQMARELLGE-----GEFIEVYVDTPLEVCERRDPKGLYKKARAGEIKNFTGIDSPYEA 163 (197)
T ss_pred HHCCeEEEEEeeCc---cHHHHHHHHHHhCc-----CceEEEEeCCCHHHHHhcCchHHHHHHHcCCCCCCcCCCCCCCC
Confidence 56677666655432 56666655555443 26777777777643 2333334433221110 0 1
Q ss_pred CceeEEEeeecCCCChHHHHHHHHHHhhhc
Q 030429 147 REVCCYMISCKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 147 ~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 176 (177)
+..|-+-+. .+...+++..+.|.+.+...
T Consensus 164 P~~Pel~l~-t~~~~vee~v~~i~~~l~~~ 192 (197)
T COG0529 164 PENPELHLD-TDRNSVEECVEQILDLLKER 192 (197)
T ss_pred CCCCeeEec-cccCCHHHHHHHHHHHHHhc
Confidence 111222222 12356888888888887653
No 455
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.72 E-value=3.7e-05 Score=53.93 Aligned_cols=32 Identities=22% Similarity=0.381 Sum_probs=27.5
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..++..+..-.++++|+.|+|||||++.+.+-
T Consensus 22 ~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 22 GVSLSIEKGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred eeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 45677778888999999999999999999853
No 456
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.72 E-value=3.6e-05 Score=53.88 Aligned_cols=32 Identities=19% Similarity=0.332 Sum_probs=27.5
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..++..+..-.++++|+.|+|||||++.+.+-
T Consensus 21 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 21 NLNFHITKGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45667777888999999999999999999853
No 457
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.72 E-value=2.1e-05 Score=52.61 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=17.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~ 35 (177)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999843
No 458
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.72 E-value=3.3e-05 Score=51.97 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030429 14 ELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~ 33 (177)
||.+.|++|+|||||+++++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i 20 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVI 20 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHH
Confidence 68999999999999999987
No 459
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.71 E-value=3.4e-05 Score=54.14 Aligned_cols=32 Identities=31% Similarity=0.442 Sum_probs=29.3
Q ss_pred ceeecccccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 2 YLHISLFFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 2 ~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
.+++++...+.-+|+++|.+|+|||||++-+.
T Consensus 43 L~disf~i~~Ge~vGiiG~NGaGKSTLlklia 74 (249)
T COG1134 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIA 74 (249)
T ss_pred ecCceEEEeCCCEEEEECCCCCcHHHHHHHHh
Confidence 35788899999999999999999999999997
No 460
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.71 E-value=3.8e-05 Score=54.49 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=28.4
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|+|||||++.+.+-
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 17 KGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356777888889999999999999999999843
No 461
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.71 E-value=4.1e-05 Score=53.84 Aligned_cols=33 Identities=33% Similarity=0.422 Sum_probs=28.2
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
.+.++..+..-.++++|+.|||||||++.+.+-
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 17 FGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred eeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 356677788889999999999999999999743
No 462
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.71 E-value=3.9e-05 Score=53.28 Aligned_cols=33 Identities=30% Similarity=0.286 Sum_probs=28.2
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|||||||++.+.+-
T Consensus 17 ~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 17 DDLSLDLYAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 345677778889999999999999999999853
No 463
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.71 E-value=3.7e-05 Score=53.75 Aligned_cols=33 Identities=30% Similarity=0.377 Sum_probs=28.0
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|+|||||++.+.+-
T Consensus 19 ~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 19 HDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345677778888999999999999999999853
No 464
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.70 E-value=3.6e-05 Score=57.04 Aligned_cols=31 Identities=26% Similarity=0.398 Sum_probs=26.7
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..++..+..--++++||+|||||||++.+.+
T Consensus 21 ~i~l~i~~Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 21 DVNLDIEDGEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4567777777789999999999999999984
No 465
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.70 E-value=4e-05 Score=52.62 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=28.2
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|+|||||++.+.+-
T Consensus 9 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 9 KGLNFAAERGEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356777788888999999999999999999743
No 466
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.70 E-value=4.5e-05 Score=51.83 Aligned_cols=33 Identities=27% Similarity=0.356 Sum_probs=28.2
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|+|||||++.+.+-
T Consensus 17 ~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 17 NDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345677788889999999999999999999843
No 467
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.70 E-value=4e-05 Score=53.24 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=28.1
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|++|+|||||++.+.+-
T Consensus 15 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 15 DDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred eceEEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 345677778888999999999999999999853
No 468
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.69 E-value=4.3e-05 Score=53.48 Aligned_cols=33 Identities=12% Similarity=0.206 Sum_probs=29.2
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..++.-.++++|+.|+|||||++.+.+-
T Consensus 4 ~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 4 DKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 467788888999999999999999999999853
No 469
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.69 E-value=4.2e-05 Score=53.42 Aligned_cols=33 Identities=24% Similarity=0.227 Sum_probs=28.2
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
.+.++..+..-.++++|+.|+|||||++.+.+-
T Consensus 17 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 17 DDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred eceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 455677778888999999999999999999854
No 470
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.69 E-value=4.1e-05 Score=53.80 Aligned_cols=32 Identities=31% Similarity=0.404 Sum_probs=27.7
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
+.++..+..-.++++|+.|+|||||++.+.+-
T Consensus 22 ~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 22 DISLSVEEGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred ceeEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45677778888999999999999999999854
No 471
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.69 E-value=4.2e-05 Score=53.46 Aligned_cols=33 Identities=33% Similarity=0.349 Sum_probs=28.2
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
.+.++..+..-.++++|+.|+|||||++.+.+-
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 17 DDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred cceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 346777788888999999999999999999853
No 472
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.69 E-value=9.3e-05 Score=53.72 Aligned_cols=25 Identities=32% Similarity=0.672 Sum_probs=22.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+...++.++|-||+|||||+|++..
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~ 165 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRN 165 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHH
Confidence 3678999999999999999998864
No 473
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.69 E-value=4.1e-05 Score=53.78 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=28.2
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++.....-.++++|+.|+|||||++.+.+-
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 17 RGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred eceeEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356677778888999999999999999999853
No 474
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.69 E-value=4.7e-05 Score=53.23 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=28.2
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..+++..+..--|+++|+.|+|||||++.+.+
T Consensus 21 ~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 21 KDVNLEINQGEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred eeEeEEeCCCcEEEEECCCCCcHHHHHHHHhc
Confidence 35678888888999999999999999999974
No 475
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.69 E-value=4.5e-05 Score=53.31 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=27.4
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..++..+..-.++++|+.|||||||++.+.+-
T Consensus 19 ~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 19 GINISISAGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45667777788999999999999999999853
No 476
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.68 E-value=0.00016 Score=48.68 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..-+.|+|.+|||||||++++..
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHH
Confidence 44689999999999999999983
No 477
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.68 E-value=4.9e-05 Score=50.90 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=28.5
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
.+.++..+..-.++++|+.|+|||||++.+.+-
T Consensus 17 ~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 17 DGVSLSVRRGEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356677888889999999999999999999854
No 478
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.68 E-value=4.5e-05 Score=53.21 Aligned_cols=32 Identities=25% Similarity=0.357 Sum_probs=27.4
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..++..+..-.++++|+.|+|||||++.+.+-
T Consensus 19 ~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 19 DISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 45667777888999999999999999999853
No 479
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.68 E-value=4.9e-05 Score=53.01 Aligned_cols=33 Identities=27% Similarity=0.290 Sum_probs=28.3
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++.....-.++++|+.|||||||++.+.+.
T Consensus 17 ~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 17 DDISFSVEKGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 345677778888999999999999999999854
No 480
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.67 E-value=0.0002 Score=61.85 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=30.0
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
+.+++..++.-.++++|+.|||||||+.++++.
T Consensus 538 ~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGE 570 (1381)
T KOG0054|consen 538 KDINFEIKKGQLVAVVGPVGSGKSSLLSAILGE 570 (1381)
T ss_pred cceeEEecCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 467888999999999999999999999999954
No 481
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.67 E-value=4.4e-05 Score=53.32 Aligned_cols=32 Identities=28% Similarity=0.366 Sum_probs=27.4
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..++..+..-.++++|+.|||||||++.+.+-
T Consensus 18 ~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 18 GIDLTVKKGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred CceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45667777888999999999999999999853
No 482
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.67 E-value=4.8e-05 Score=54.75 Aligned_cols=33 Identities=33% Similarity=0.378 Sum_probs=28.7
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|+|||||++.+.+-
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 18 EDINLTLESGELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred eeeeEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 456777888889999999999999999999854
No 483
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.66 E-value=5.4e-05 Score=49.63 Aligned_cols=32 Identities=34% Similarity=0.495 Sum_probs=27.3
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..++..+..-.++++|++|+|||||++.+.+.
T Consensus 18 ~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 18 DISLTINPGDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 45667777888999999999999999999744
No 484
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.66 E-value=4.9e-05 Score=53.37 Aligned_cols=33 Identities=24% Similarity=0.302 Sum_probs=28.0
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
.+.++..+..-.++++|+.|+|||||++.+.+-
T Consensus 19 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 19 DDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 345677777888999999999999999999854
No 485
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.66 E-value=5.2e-05 Score=53.54 Aligned_cols=33 Identities=27% Similarity=0.295 Sum_probs=28.4
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++.....-.++++|+.|+|||||++.+.+-
T Consensus 17 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (227)
T cd03260 17 KDISLDIPKGEITALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 356677788889999999999999999999854
No 486
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.65 E-value=0.00049 Score=42.29 Aligned_cols=81 Identities=12% Similarity=0.071 Sum_probs=47.7
Q ss_pred EEEEc-CCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEE-eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCC
Q 030429 15 LSLIG-LQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT-KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAAD 92 (177)
Q Consensus 15 i~i~G-~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 92 (177)
|.+.| ..|+||||+...+...- ... +....-++ ...+.+.++|+|+...... ...+..+|.++++.+.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~-~~~-----~~~vl~~d~d~~~d~viiD~p~~~~~~~--~~~l~~ad~viv~~~~~- 72 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAAL-ARR-----GKRVLLIDLDPQYDYIIIDTPPSLGLLT--RNALAAADLVLIPVQPS- 72 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHH-HhC-----CCcEEEEeCCCCCCEEEEeCcCCCCHHH--HHHHHHCCEEEEeccCC-
Confidence 56667 67899999987776211 111 11111111 1126788999998643332 35677799999999874
Q ss_pred CCCHHHHHHHHH
Q 030429 93 RDSVPIARSELH 104 (177)
Q Consensus 93 ~~~~~~~~~~~~ 104 (177)
..+.......+.
T Consensus 73 ~~s~~~~~~~~~ 84 (104)
T cd02042 73 PLDLDGLEKLLE 84 (104)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 487
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.65 E-value=5.3e-05 Score=52.77 Aligned_cols=33 Identities=30% Similarity=0.328 Sum_probs=28.6
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
.+.++..++.-.++++|+.|+|||||++.+.+.
T Consensus 19 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 19 SGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356777888889999999999999999999854
No 488
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.65 E-value=5.4e-05 Score=53.19 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=27.5
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..++..+..-.++++|+.|+|||||++.+.+-
T Consensus 23 ~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 23 GVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45677777888999999999999999999854
No 489
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.65 E-value=5.6e-05 Score=52.33 Aligned_cols=33 Identities=36% Similarity=0.360 Sum_probs=28.5
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..++.-.++++|+.|+|||||++.+.+-
T Consensus 18 ~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 18 QQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred eeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 456777888889999999999999999999853
No 490
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.65 E-value=5.7e-05 Score=52.62 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=23.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+++..-|+|+|++|||||||++.+.+
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 45677899999999999999999974
No 491
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.65 E-value=5.5e-05 Score=53.64 Aligned_cols=33 Identities=15% Similarity=0.334 Sum_probs=27.9
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|+|||||++.+.+-
T Consensus 26 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 26 HNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred EeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 345677777888999999999999999999854
No 492
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.65 E-value=5.9e-05 Score=51.01 Aligned_cols=33 Identities=33% Similarity=0.356 Sum_probs=28.1
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++.....-.++++|+.|+|||||++.+.+-
T Consensus 17 ~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 17 DDISLTVEKGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 356677778889999999999999999999853
No 493
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.64 E-value=5.2e-05 Score=53.70 Aligned_cols=33 Identities=33% Similarity=0.290 Sum_probs=28.0
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|||||||++.+.+-
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 17 NGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred ccceeEecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 345677778888999999999999999999853
No 494
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.64 E-value=5.2e-05 Score=54.09 Aligned_cols=32 Identities=28% Similarity=0.380 Sum_probs=27.2
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..++..+..-.++++|+.|||||||++.+.+-
T Consensus 20 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 20 NINLNINPGEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45667777788999999999999999999843
No 495
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.64 E-value=5.3e-05 Score=54.03 Aligned_cols=33 Identities=27% Similarity=0.361 Sum_probs=28.4
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|||||||++.+.+-
T Consensus 17 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 17 KGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred eccceEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345677788889999999999999999999854
No 496
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.00034 Score=53.68 Aligned_cols=119 Identities=19% Similarity=0.222 Sum_probs=68.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh----cCCC----------CCC---------------CCCccceeEEE---------
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIA----TGGY----------SED---------------MIPTVGFNMRK--------- 51 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~----~~~~----------~~~---------------~~~t~~~~~~~--------- 51 (177)
++++-|.++|-.|+||||-+-.++ +..+ ... .....++-...
T Consensus 376 krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~va 455 (587)
T KOG0781|consen 376 KRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGVA 455 (587)
T ss_pred CCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHHH
Confidence 478999999999999999887776 1111 000 00000000000
Q ss_pred ------EEeCCEEEEEEecCCchhhH-HhH---HHH--hcCCCEEEEEEeCC-CCCCHHHHHHHHHHHHcCCCCCCCcEE
Q 030429 52 ------VTKGNVTIKLWDLGGQRRFR-TMW---ERY--CRGVSAILYVVDAA-DRDSVPIARSELHELLMKPSLSGIPLL 118 (177)
Q Consensus 52 ------~~~~~~~~~~~D~~g~~~~~-~~~---~~~--~~~~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i 118 (177)
-...+.++.++||+|-.... .++ ..+ ....|.+++|-.+- ..++.+.+...-..+... ..++.---
T Consensus 456 k~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~-~~~r~id~ 534 (587)
T KOG0781|consen 456 KEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADH-STPRLIDG 534 (587)
T ss_pred HHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcC-CCccccce
Confidence 01246789999999943221 122 222 45689999998763 234566655544444333 33333345
Q ss_pred EEeeCCCcccc
Q 030429 119 VLGNKIDKSEA 129 (177)
Q Consensus 119 iv~nK~D~~~~ 129 (177)
++++|+|..+.
T Consensus 535 ~~ltk~dtv~d 545 (587)
T KOG0781|consen 535 ILLTKFDTVDD 545 (587)
T ss_pred EEEEeccchhh
Confidence 67999998774
No 497
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.63 E-value=5.2e-05 Score=53.48 Aligned_cols=32 Identities=28% Similarity=0.416 Sum_probs=27.8
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..++..+..-.++++|+.|+|||||++.+.+-
T Consensus 23 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 23 DVSFSIKKGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CceeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45677778889999999999999999999853
No 498
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.63 E-value=6.4e-05 Score=51.95 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=28.4
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++.....-.++++|+.|+|||||++.+.+.
T Consensus 17 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 17 EGLSFTLNAGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 346777788889999999999999999999853
No 499
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.63 E-value=5.6e-05 Score=53.57 Aligned_cols=32 Identities=28% Similarity=0.386 Sum_probs=27.3
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..++..+..-.++++|+.|+|||||++.+.+-
T Consensus 23 ~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 23 DVSLSVPKGEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45667777889999999999999999999843
No 500
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.63 E-value=5.2e-05 Score=53.82 Aligned_cols=32 Identities=34% Similarity=0.371 Sum_probs=27.2
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..++..+..-.++++|+.|||||||++.+.+-
T Consensus 18 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 18 DVSFSVRPGEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred CceEEecCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 45677777788999999999999999999843
Done!