Query 030429
Match_columns 177
No_of_seqs 131 out of 1342
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 22:07:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030429.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030429hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zd9_A ADP-ribosylation factor 100.0 3.6E-36 1.2E-40 205.3 20.6 172 6-177 16-187 (188)
2 1r8s_A ADP-ribosylation factor 100.0 8.1E-36 2.8E-40 199.0 19.2 164 13-177 1-164 (164)
3 1upt_A ARL1, ADP-ribosylation 100.0 3.1E-35 1.1E-39 197.3 21.3 167 10-177 5-171 (171)
4 1ksh_A ARF-like protein 2; sma 100.0 2E-35 7E-40 201.0 20.0 166 10-176 16-181 (186)
5 1fzq_A ADP-ribosylation factor 100.0 1.4E-35 4.8E-40 201.3 18.9 166 10-176 14-179 (181)
6 2b6h_A ADP-ribosylation factor 100.0 1.3E-35 4.4E-40 203.2 17.4 169 7-176 24-192 (192)
7 1zj6_A ADP-ribosylation factor 100.0 2.3E-35 7.8E-40 201.1 18.0 168 7-175 11-178 (187)
8 4bas_A ADP-ribosylation factor 100.0 1.8E-35 6.1E-40 203.2 16.9 170 7-176 12-190 (199)
9 4dkx_A RAS-related protein RAB 100.0 4.5E-36 1.5E-40 208.6 12.9 157 10-175 11-176 (216)
10 2x77_A ADP-ribosylation factor 100.0 3.9E-35 1.3E-39 200.2 17.0 166 10-176 20-185 (189)
11 1moz_A ARL1, ADP-ribosylation 100.0 4E-35 1.4E-39 199.0 16.3 166 10-176 16-181 (183)
12 2h17_A ADP-ribosylation factor 100.0 4.9E-35 1.7E-39 198.5 16.6 164 8-172 17-180 (181)
13 2h57_A ADP-ribosylation factor 100.0 8E-35 2.7E-39 198.8 17.3 169 8-176 17-188 (190)
14 1m2o_B GTP-binding protein SAR 100.0 5.1E-34 1.7E-38 195.0 18.2 162 10-172 21-189 (190)
15 1f6b_A SAR1; gtpases, N-termin 100.0 4.2E-34 1.4E-38 196.6 15.6 163 10-173 23-197 (198)
16 3o47_A ADP-ribosylation factor 100.0 8.4E-34 2.9E-38 208.7 16.9 169 8-177 161-329 (329)
17 3ihw_A Centg3; RAS, centaurin, 100.0 4.1E-33 1.4E-37 189.6 13.8 160 8-176 16-181 (184)
18 3q72_A GTP-binding protein RAD 100.0 4.7E-33 1.6E-37 185.9 11.7 160 12-177 2-166 (166)
19 1ek0_A Protein (GTP-binding pr 100.0 1.8E-33 6.3E-38 188.3 9.7 159 11-175 2-169 (170)
20 3oes_A GTPase rhebl1; small GT 100.0 1E-32 3.5E-37 190.0 13.0 164 5-176 17-188 (201)
21 3lvq_E ARF-GAP with SH3 domain 100.0 6.8E-32 2.3E-36 208.6 18.8 167 9-176 319-485 (497)
22 2hup_A RAS-related protein RAB 100.0 7.9E-32 2.7E-36 185.7 16.9 163 8-176 25-194 (201)
23 3bc1_A RAS-related protein RAB 100.0 9.7E-32 3.3E-36 183.6 17.2 162 9-175 8-185 (195)
24 4dsu_A GTPase KRAS, isoform 2B 100.0 1.5E-32 5E-37 187.0 13.0 162 10-175 2-166 (189)
25 3t5g_A GTP-binding protein RHE 100.0 2.2E-32 7.6E-37 185.2 13.4 163 9-176 3-170 (181)
26 1u8z_A RAS-related protein RAL 100.0 4.2E-32 1.4E-36 181.3 14.5 160 11-175 3-167 (168)
27 1r2q_A RAS-related protein RAB 100.0 1E-31 3.5E-36 179.8 16.4 160 10-175 4-169 (170)
28 1c1y_A RAS-related protein RAP 100.0 2.7E-32 9.2E-37 182.2 13.4 160 11-174 2-166 (167)
29 3kkq_A RAS-related protein M-R 100.0 3.1E-32 1E-36 184.8 13.9 163 9-176 15-183 (183)
30 1x3s_A RAS-related protein RAB 100.0 5.9E-32 2E-36 185.0 14.9 164 8-176 11-179 (195)
31 1wms_A RAB-9, RAB9, RAS-relate 100.0 1.5E-31 5.3E-36 180.3 16.3 164 9-176 4-175 (177)
32 2fg5_A RAB-22B, RAS-related pr 100.0 2.7E-31 9.3E-36 181.7 17.6 162 9-176 20-187 (192)
33 3tkl_A RAS-related protein RAB 100.0 2.5E-31 8.7E-36 182.0 17.5 159 9-176 13-180 (196)
34 2ew1_A RAS-related protein RAB 100.0 2.3E-32 7.9E-37 188.3 12.3 161 9-175 23-189 (201)
35 1kao_A RAP2A; GTP-binding prot 100.0 8.1E-32 2.8E-36 179.7 14.4 160 11-175 2-166 (167)
36 2fn4_A P23, RAS-related protei 100.0 1.6E-32 5.6E-37 185.5 10.9 164 8-176 5-173 (181)
37 1z2a_A RAS-related protein RAB 100.0 5.2E-32 1.8E-36 181.0 13.1 159 10-175 3-167 (168)
38 2hxs_A RAB-26, RAS-related pro 100.0 8.4E-32 2.9E-36 181.7 14.0 162 10-176 4-174 (178)
39 2oil_A CATX-8, RAS-related pro 100.0 3.3E-31 1.1E-35 181.2 17.0 164 6-175 19-188 (193)
40 3q85_A GTP-binding protein REM 100.0 6.2E-33 2.1E-37 185.8 8.2 161 12-177 2-169 (169)
41 2bov_A RAla, RAS-related prote 100.0 1.5E-31 5.1E-36 184.5 15.2 163 8-175 10-177 (206)
42 2a9k_A RAS-related protein RAL 100.0 1E-31 3.6E-36 182.4 14.2 162 10-176 16-182 (187)
43 3reg_A RHO-like small GTPase; 100.0 2.1E-32 7.3E-37 187.4 10.7 162 8-176 19-189 (194)
44 1z06_A RAS-related protein RAB 100.0 4.6E-32 1.6E-36 185.0 12.2 163 8-175 16-188 (189)
45 2y8e_A RAB-protein 6, GH09086P 100.0 1.7E-31 5.8E-36 180.2 14.8 162 9-176 11-178 (179)
46 2f7s_A C25KG, RAS-related prot 100.0 1.4E-31 4.7E-36 186.3 14.6 162 9-175 22-199 (217)
47 2bme_A RAB4A, RAS-related prot 100.0 6.2E-31 2.1E-35 178.7 17.5 161 9-175 7-173 (186)
48 1z0f_A RAB14, member RAS oncog 100.0 3E-31 1E-35 179.0 15.5 161 9-175 12-178 (179)
49 3tw8_B RAS-related protein RAB 100.0 2.2E-31 7.4E-36 180.0 14.8 161 8-175 5-171 (181)
50 3clv_A RAB5 protein, putative; 100.0 4.2E-31 1.5E-35 181.8 16.5 160 8-175 3-204 (208)
51 2efe_B Small GTP-binding prote 100.0 3E-31 1E-35 179.5 15.5 162 9-176 9-176 (181)
52 1z0j_A RAB-22, RAS-related pro 100.0 4.2E-32 1.4E-36 181.8 11.0 159 10-174 4-168 (170)
53 3dz8_A RAS-related protein RAB 100.0 1.1E-31 3.7E-36 183.5 13.1 159 9-176 20-187 (191)
54 2a5j_A RAS-related protein RAB 100.0 3.7E-31 1.3E-35 180.8 15.7 162 8-175 17-184 (191)
55 1g16_A RAS-related protein SEC 100.0 8.5E-32 2.9E-36 180.3 12.1 160 11-176 2-166 (170)
56 2nzj_A GTP-binding protein REM 100.0 3.3E-31 1.1E-35 178.3 14.8 161 10-176 2-170 (175)
57 1zbd_A Rabphilin-3A; G protein 100.0 1E-30 3.6E-35 180.1 17.6 158 9-175 5-171 (203)
58 2p5s_A RAS and EF-hand domain 100.0 1.2E-31 4.1E-36 184.4 12.8 165 5-175 21-197 (199)
59 2fu5_C RAS-related protein RAB 100.0 5.5E-32 1.9E-36 183.5 10.9 161 9-175 5-171 (183)
60 2atv_A RERG, RAS-like estrogen 100.0 1.3E-31 4.3E-36 183.8 12.8 164 7-176 23-192 (196)
61 3t1o_A Gliding protein MGLA; G 100.0 2.1E-31 7.3E-36 182.4 13.9 166 3-176 5-193 (198)
62 2il1_A RAB12; G-protein, GDP, 100.0 3.9E-31 1.3E-35 180.9 15.1 163 9-176 23-191 (192)
63 3q3j_B RHO-related GTP-binding 100.0 1.7E-31 5.7E-36 185.7 13.4 161 9-176 24-204 (214)
64 2g6b_A RAS-related protein RAB 100.0 2.5E-31 8.6E-36 179.7 13.8 162 9-176 7-175 (180)
65 2gf9_A RAS-related protein RAB 100.0 3.2E-31 1.1E-35 180.8 14.4 159 8-175 18-185 (189)
66 2iwr_A Centaurin gamma 1; ANK 100.0 1.8E-31 6.1E-36 180.3 12.8 157 9-175 4-169 (178)
67 2erx_A GTP-binding protein DI- 100.0 2.2E-31 7.7E-36 178.5 13.2 161 11-176 2-168 (172)
68 1z08_A RAS-related protein RAB 100.0 1.6E-31 5.5E-36 179.0 12.2 160 10-175 4-169 (170)
69 2ce2_X GTPase HRAS; signaling 100.0 3.1E-31 1.1E-35 176.6 13.4 159 12-175 3-165 (166)
70 3cbq_A GTP-binding protein REM 100.0 2.7E-31 9.2E-36 182.2 13.1 163 9-176 20-189 (195)
71 2yc2_C IFT27, small RAB-relate 100.0 1E-31 3.5E-36 185.5 10.9 161 10-175 18-192 (208)
72 1ky3_A GTP-binding protein YPT 100.0 1.7E-31 5.8E-36 180.7 11.6 163 9-175 5-178 (182)
73 2o52_A RAS-related protein RAB 100.0 5.5E-31 1.9E-35 181.3 14.3 161 9-175 22-188 (200)
74 3con_A GTPase NRAS; structural 100.0 7.3E-31 2.5E-35 179.1 14.7 164 8-176 17-184 (190)
75 3c5c_A RAS-like protein 12; GD 100.0 1.7E-31 5.8E-36 182.0 11.4 162 8-175 17-186 (187)
76 2j1l_A RHO-related GTP-binding 100.0 1.5E-31 5.1E-36 186.0 11.3 166 9-176 31-210 (214)
77 1vg8_A RAS-related protein RAB 100.0 3.1E-31 1.1E-35 183.1 12.3 163 9-175 5-175 (207)
78 2bcg_Y Protein YP2, GTP-bindin 100.0 6.6E-31 2.2E-35 181.5 13.9 161 9-175 5-171 (206)
79 2fv8_A H6, RHO-related GTP-bin 100.0 1.5E-30 5.1E-35 180.0 15.5 168 7-176 20-201 (207)
80 4djt_A GTP-binding nuclear pro 100.0 8.2E-32 2.8E-36 187.6 9.2 162 9-176 8-176 (218)
81 3cph_A RAS-related protein SEC 100.0 8.6E-31 2.9E-35 181.6 14.2 158 9-175 17-182 (213)
82 3cpj_B GTP-binding protein YPT 100.0 1.1E-30 3.8E-35 182.6 14.5 162 9-176 10-177 (223)
83 1mh1_A RAC1; GTP-binding, GTPa 100.0 3.3E-31 1.1E-35 179.9 11.4 165 10-176 3-181 (186)
84 4gzl_A RAS-related C3 botulinu 100.0 3.4E-31 1.2E-35 182.9 11.1 164 8-173 26-203 (204)
85 2fh5_B SR-beta, signal recogni 100.0 2.5E-30 8.5E-35 179.6 15.6 163 10-173 5-214 (214)
86 2j0v_A RAC-like GTP-binding pr 100.0 4.9E-31 1.7E-35 182.9 11.9 159 8-175 5-180 (212)
87 2gf0_A GTP-binding protein DI- 100.0 4.6E-31 1.6E-35 181.1 11.5 162 10-176 6-172 (199)
88 3bwd_D RAC-like GTP-binding pr 100.0 1.9E-31 6.4E-36 180.6 9.3 160 7-175 3-181 (182)
89 2atx_A Small GTP binding prote 100.0 3.1E-30 1.1E-34 176.5 15.1 161 8-174 14-192 (194)
90 1m7b_A RND3/RHOE small GTP-bin 100.0 7.8E-31 2.7E-35 178.2 11.8 161 9-175 4-183 (184)
91 2q3h_A RAS homolog gene family 100.0 1.9E-30 6.4E-35 178.5 13.6 163 7-175 15-195 (201)
92 3gj0_A GTP-binding nuclear pro 100.0 1.3E-31 4.4E-36 187.0 7.5 162 8-176 11-176 (221)
93 2gco_A H9, RHO-related GTP-bin 100.0 4.3E-30 1.5E-34 176.9 14.9 164 10-175 23-200 (201)
94 2zej_A Dardarin, leucine-rich 100.0 6.7E-31 2.3E-35 178.6 10.3 163 12-176 2-179 (184)
95 2g3y_A GTP-binding protein GEM 100.0 2E-30 7E-35 179.6 12.8 162 8-175 33-203 (211)
96 1gwn_A RHO-related GTP-binding 100.0 1.4E-30 4.8E-35 179.9 11.7 161 9-175 25-204 (205)
97 2lkc_A Translation initiation 100.0 1.7E-29 6E-34 170.3 14.3 162 9-176 5-172 (178)
98 3l0i_B RAS-related protein RAB 100.0 1.3E-31 4.3E-36 184.3 2.6 159 9-176 30-197 (199)
99 3llu_A RAS-related GTP-binding 100.0 5.8E-30 2E-34 175.6 9.5 163 7-173 15-195 (196)
100 1svi_A GTP-binding protein YSX 100.0 1.4E-28 4.6E-33 168.4 15.9 162 7-174 18-194 (195)
101 2wji_A Ferrous iron transport 100.0 3.4E-28 1.2E-32 162.5 17.1 148 12-174 3-164 (165)
102 2qu8_A Putative nucleolar GTP- 100.0 1.3E-28 4.6E-33 172.6 15.5 162 10-175 27-205 (228)
103 3th5_A RAS-related C3 botulinu 99.9 2E-31 7E-36 183.9 0.0 165 7-173 25-203 (204)
104 2gj8_A MNME, tRNA modification 100.0 2E-28 6.8E-33 164.8 14.5 153 10-174 2-165 (172)
105 2cjw_A GTP-binding protein GEM 100.0 1.4E-29 4.7E-34 173.3 7.8 159 10-174 4-171 (192)
106 3pqc_A Probable GTP-binding pr 100.0 5.2E-28 1.8E-32 165.2 15.2 163 7-175 18-194 (195)
107 2dyk_A GTP-binding protein; GT 100.0 7.6E-28 2.6E-32 159.7 15.1 149 13-173 2-160 (161)
108 3r7w_A Gtpase1, GTP-binding pr 100.0 3.5E-28 1.2E-32 177.3 14.1 163 10-173 1-179 (307)
109 2cxx_A Probable GTP-binding pr 100.0 6.1E-29 2.1E-33 169.3 8.4 161 13-176 2-185 (190)
110 3r7w_B Gtpase2, GTP-binding pr 100.0 1.5E-28 5.1E-33 178.4 9.6 158 14-175 1-174 (331)
111 3iev_A GTP-binding protein ERA 100.0 3.8E-27 1.3E-31 171.9 16.9 161 9-175 7-182 (308)
112 2wkq_A NPH1-1, RAS-related C3 100.0 2E-27 7E-32 174.8 15.0 166 9-176 152-331 (332)
113 4dhe_A Probable GTP-binding pr 100.0 1.7E-27 5.7E-32 166.2 12.5 163 8-175 25-211 (223)
114 1wf3_A GTP-binding protein; GT 99.9 9.4E-27 3.2E-31 169.1 16.2 155 11-174 6-172 (301)
115 2wjg_A FEOB, ferrous iron tran 99.9 6.9E-27 2.4E-31 159.0 14.4 151 11-176 6-170 (188)
116 3c5h_A Glucocorticoid receptor 99.9 2E-28 6.9E-33 174.3 6.4 163 8-174 15-254 (255)
117 3a1s_A Iron(II) transport prot 99.9 1.9E-26 6.6E-31 164.2 16.0 150 10-174 3-166 (258)
118 2f9l_A RAB11B, member RAS onco 99.9 2.9E-27 9.8E-32 162.5 10.0 160 10-175 3-168 (199)
119 2hjg_A GTP-binding protein ENG 99.9 1.3E-26 4.4E-31 176.4 13.4 161 10-175 173-349 (436)
120 3b1v_A Ferrous iron uptake tra 99.9 3.8E-26 1.3E-30 163.7 13.9 148 11-174 2-163 (272)
121 3i8s_A Ferrous iron transport 99.9 1.4E-26 4.9E-31 166.3 9.9 150 11-175 2-169 (274)
122 3iby_A Ferrous iron transport 99.9 7.5E-26 2.6E-30 161.0 13.4 145 13-172 2-164 (256)
123 3gee_A MNME, tRNA modification 99.9 5E-26 1.7E-30 174.0 12.6 157 9-174 230-397 (476)
124 3k53_A Ferrous iron transport 99.9 2.2E-25 7.5E-30 160.0 14.5 150 12-175 3-166 (271)
125 3dpu_A RAB family protein; roc 99.9 4.2E-26 1.5E-30 177.6 11.6 159 8-176 37-209 (535)
126 1lnz_A SPO0B-associated GTP-bi 99.9 6.9E-26 2.3E-30 166.8 12.0 161 10-176 156-331 (342)
127 3ohm_A Guanine nucleotide-bind 99.9 4.1E-25 1.4E-29 161.2 15.9 136 41-176 151-319 (327)
128 1oix_A RAS-related protein RAB 99.9 7.1E-26 2.4E-30 154.7 11.1 158 10-173 27-190 (191)
129 4dcu_A GTP-binding protein ENG 99.9 1.7E-25 5.9E-30 171.1 13.7 162 9-175 192-369 (456)
130 1cip_A Protein (guanine nucleo 99.9 1.6E-25 5.6E-30 165.3 12.9 134 42-175 178-344 (353)
131 3sjy_A Translation initiation 99.9 6.9E-25 2.4E-29 165.4 16.5 163 9-174 5-191 (403)
132 1xzp_A Probable tRNA modificat 99.9 3.9E-25 1.3E-29 169.3 14.2 152 10-174 241-404 (482)
133 4fid_A G protein alpha subunit 99.9 6.6E-25 2.2E-29 160.6 13.1 134 41-174 145-327 (340)
134 2e87_A Hypothetical protein PH 99.9 1.7E-24 5.7E-29 161.0 15.4 159 10-175 165-336 (357)
135 1mky_A Probable GTP-binding pr 99.9 1.8E-24 6.3E-29 164.7 15.5 151 13-174 2-165 (439)
136 1s0u_A EIF-2-gamma, translatio 99.9 4.7E-24 1.6E-28 161.1 16.8 161 9-174 5-197 (408)
137 1wb1_A Translation elongation 99.9 2.1E-24 7.3E-29 165.7 14.3 159 11-174 18-188 (482)
138 1nrj_B SR-beta, signal recogni 99.9 5.6E-26 1.9E-30 158.0 5.0 118 9-131 9-137 (218)
139 3geh_A MNME, tRNA modification 99.9 1.1E-24 3.9E-29 166.0 12.3 152 10-175 222-384 (462)
140 1mky_A Probable GTP-binding pr 99.9 3.2E-24 1.1E-28 163.4 14.5 160 11-175 179-355 (439)
141 1zcb_A G alpha I/13; GTP-bindi 99.9 3E-24 1E-28 159.1 13.6 133 43-175 187-353 (362)
142 1kk1_A EIF2gamma; initiation o 99.9 7.1E-24 2.4E-28 160.2 15.5 161 9-174 7-199 (410)
143 1ega_A Protein (GTP-binding pr 99.9 4.9E-24 1.7E-28 154.9 14.1 156 10-174 6-174 (301)
144 2hjg_A GTP-binding protein ENG 99.9 2.5E-24 8.5E-29 163.9 11.9 151 13-175 4-165 (436)
145 3qq5_A Small GTP-binding prote 99.9 9.5E-25 3.2E-29 164.6 8.3 155 8-174 30-195 (423)
146 3j2k_7 ERF3, eukaryotic polype 99.9 2.3E-23 7.8E-28 158.5 15.7 155 9-167 14-217 (439)
147 3p26_A Elongation factor 1 alp 99.9 1.9E-23 6.4E-28 160.8 14.7 153 10-164 31-227 (483)
148 2elf_A Protein translation elo 99.9 1.1E-23 3.8E-28 156.8 12.9 146 14-174 23-179 (370)
149 2c78_A Elongation factor TU-A; 99.9 2.7E-23 9.3E-28 156.8 14.1 162 8-174 7-211 (405)
150 2qtf_A Protein HFLX, GTP-bindi 99.9 3.7E-23 1.3E-27 153.6 14.6 162 11-175 177-354 (364)
151 2xtp_A GTPase IMAP family memb 99.9 2.2E-23 7.5E-28 148.7 12.7 161 9-175 19-208 (260)
152 2ywe_A GTP-binding protein LEP 99.9 9.8E-23 3.3E-27 159.1 17.1 159 9-174 3-183 (600)
153 2xtz_A Guanine nucleotide-bind 99.9 7.3E-24 2.5E-28 156.5 9.8 121 55-175 181-345 (354)
154 1azs_C GS-alpha; complex (lyas 99.9 3.2E-23 1.1E-27 154.8 13.0 132 44-175 204-385 (402)
155 1zun_B Sulfate adenylate trans 99.9 3.4E-23 1.2E-27 157.5 13.3 153 9-165 21-214 (434)
156 3cb4_D GTP-binding protein LEP 99.9 6.4E-23 2.2E-27 160.4 15.1 157 11-174 3-181 (599)
157 3tr5_A RF-3, peptide chain rel 99.9 1.1E-22 3.6E-27 157.5 16.0 116 9-129 10-149 (528)
158 1jny_A EF-1-alpha, elongation 99.9 7.9E-24 2.7E-28 161.0 9.5 153 9-165 3-203 (435)
159 1d2e_A Elongation factor TU (E 99.9 5.2E-23 1.8E-27 154.8 13.8 159 11-174 2-194 (397)
160 3izy_P Translation initiation 99.9 3.7E-25 1.3E-29 170.7 1.6 160 10-174 2-167 (537)
161 4dcu_A GTP-binding protein ENG 99.9 1.6E-23 5.5E-28 160.2 9.4 151 12-174 23-184 (456)
162 2ged_A SR-beta, signal recogni 99.9 3.8E-24 1.3E-28 146.0 5.0 126 9-139 45-181 (193)
163 2aka_B Dynamin-1; fusion prote 99.9 2.5E-22 8.4E-27 145.9 13.6 158 10-172 24-250 (299)
164 3lxw_A GTPase IMAP family memb 99.9 5.2E-22 1.8E-26 140.6 14.7 165 8-175 17-208 (247)
165 3t5d_A Septin-7; GTP-binding p 99.9 1E-22 3.5E-27 146.3 11.1 158 10-173 6-202 (274)
166 3lxx_A GTPase IMAP family memb 99.9 4.2E-22 1.4E-26 140.5 13.8 157 9-175 26-214 (239)
167 3avx_A Elongation factor TS, e 99.9 2E-22 6.9E-27 164.9 13.3 162 8-174 292-485 (1289)
168 3izq_1 HBS1P, elongation facto 99.9 3E-23 1E-27 163.1 7.8 153 10-165 165-362 (611)
169 1g7s_A Translation initiation 99.9 2.4E-22 8.1E-27 157.3 11.8 159 11-174 4-217 (594)
170 1f60_A Elongation factor EEF1A 99.9 1.2E-22 4E-27 155.3 8.3 152 10-165 5-202 (458)
171 1zo1_I IF2, translation initia 99.9 7.4E-24 2.5E-28 162.3 1.6 157 10-172 2-164 (501)
172 1pui_A ENGB, probable GTP-bind 99.9 1.4E-21 4.9E-26 134.9 12.9 160 7-175 21-199 (210)
173 1dar_A EF-G, elongation factor 99.9 4.3E-21 1.5E-25 152.9 16.6 124 1-129 1-144 (691)
174 2h5e_A Peptide chain release f 99.9 1E-20 3.5E-25 146.6 18.1 117 8-129 9-149 (529)
175 1r5b_A Eukaryotic peptide chai 99.9 1.1E-22 3.6E-27 155.9 6.3 155 8-166 39-243 (467)
176 2j69_A Bacterial dynamin-like 99.9 6.8E-21 2.3E-25 151.9 15.2 163 9-175 66-325 (695)
177 1jwy_B Dynamin A GTPase domain 99.9 4.6E-21 1.6E-25 140.2 13.2 161 10-175 22-262 (315)
178 3mca_A HBS1, elongation factor 99.9 3.6E-23 1.2E-27 162.2 1.2 161 9-173 174-395 (592)
179 2dy1_A Elongation factor G; tr 99.9 6.8E-20 2.3E-24 145.6 18.5 116 7-127 4-139 (665)
180 2qag_A Septin-2, protein NEDD5 99.8 8.4E-22 2.9E-26 146.4 6.3 160 9-175 34-233 (361)
181 1udx_A The GTP-binding protein 99.8 1.9E-20 6.5E-25 140.8 12.6 167 4-176 149-326 (416)
182 2xex_A Elongation factor G; GT 99.8 1.9E-19 6.6E-24 143.5 17.1 117 8-129 6-142 (693)
183 3def_A T7I23.11 protein; chlor 99.8 5E-20 1.7E-24 131.5 11.5 118 10-128 34-165 (262)
184 2rdo_7 EF-G, elongation factor 99.8 5.8E-19 2E-23 140.9 18.5 116 9-129 7-149 (704)
185 1h65_A Chloroplast outer envel 99.8 7.8E-19 2.7E-23 125.8 14.5 119 10-129 37-169 (270)
186 3vqt_A RF-3, peptide chain rel 99.8 1.2E-18 4E-23 135.6 16.1 119 6-129 25-167 (548)
187 2x2e_A Dynamin-1; nitration, h 99.8 1.1E-19 3.8E-24 134.8 9.6 156 11-171 30-254 (353)
188 3t34_A Dynamin-related protein 99.8 1.3E-19 4.5E-24 134.8 9.4 151 13-170 35-256 (360)
189 3p32_A Probable GTPase RV1496/ 99.8 3.3E-19 1.1E-23 132.4 9.3 109 55-175 170-284 (355)
190 1wxq_A GTP-binding protein; st 99.8 2.3E-19 7.8E-24 134.6 4.9 81 13-93 1-114 (397)
191 2qpt_A EH domain-containing pr 99.8 3.8E-18 1.3E-22 132.9 10.9 125 10-138 63-242 (550)
192 2qnr_A Septin-2, protein NEDD5 99.8 1E-18 3.5E-23 126.9 6.9 160 9-175 15-214 (301)
193 1n0u_A EF-2, elongation factor 99.7 3.2E-18 1.1E-22 139.0 8.9 115 9-128 16-164 (842)
194 3zvr_A Dynamin-1; hydrolase, D 99.7 4.5E-17 1.5E-21 129.8 14.1 156 11-171 50-274 (772)
195 1yrb_A ATP(GTP)binding protein 99.7 8.7E-18 3E-22 119.7 9.1 170 5-175 7-257 (262)
196 2www_A Methylmalonic aciduria 99.7 2.7E-17 9.4E-22 121.7 11.4 108 55-174 165-278 (349)
197 1u0l_A Probable GTPase ENGC; p 99.7 8.1E-19 2.8E-23 127.5 2.9 132 27-171 32-169 (301)
198 2wsm_A Hydrogenase expression/ 99.7 6E-18 2E-22 117.7 7.1 151 10-175 28-214 (221)
199 2p67_A LAO/AO transport system 99.7 1.9E-17 6.7E-22 122.2 9.8 157 6-174 50-260 (341)
200 2qag_C Septin-7; cell cycle, c 99.7 1.1E-17 3.8E-22 125.9 7.0 158 10-173 29-225 (418)
201 3l82_B F-box only protein 4; T 99.7 9.1E-17 3.1E-21 108.9 9.5 112 64-177 109-225 (227)
202 1jal_A YCHF protein; nucleotid 99.7 5.6E-16 1.9E-20 114.4 14.3 81 12-92 2-108 (363)
203 4a9a_A Ribosome-interacting GT 99.7 4.3E-16 1.5E-20 115.6 12.8 83 11-93 71-162 (376)
204 3j25_A Tetracycline resistance 99.7 2.9E-17 9.8E-22 130.1 6.8 157 13-174 3-238 (638)
205 4fn5_A EF-G 1, elongation fact 99.7 9E-15 3.1E-19 117.2 17.7 115 9-128 10-151 (709)
206 2hf9_A Probable hydrogenase ni 99.7 1.8E-18 6.3E-23 120.6 -3.1 61 114-177 164-226 (226)
207 2qm8_A GTPase/ATPase; G protei 99.6 1.4E-15 4.7E-20 112.0 8.7 158 5-174 48-260 (337)
208 2dby_A GTP-binding protein; GD 99.6 1.2E-14 4.2E-19 107.8 12.7 80 13-92 2-111 (368)
209 3l2o_B F-box only protein 4; s 99.6 2.5E-15 8.4E-20 106.6 7.6 113 63-177 193-310 (312)
210 2ohf_A Protein OLA1, GTP-bindi 99.4 3.7E-13 1.3E-17 100.4 8.2 87 9-95 19-131 (396)
211 2yv5_A YJEQ protein; hydrolase 99.3 1.1E-12 3.9E-17 95.2 5.8 96 67-171 66-165 (302)
212 2j37_W Signal recognition part 99.2 5.1E-11 1.7E-15 91.7 9.9 155 10-172 99-310 (504)
213 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 1.2E-10 4.3E-15 86.9 10.2 84 9-92 17-127 (392)
214 1tq4_A IIGP1, interferon-induc 99.2 4.6E-10 1.6E-14 84.4 12.4 158 11-175 68-253 (413)
215 2qag_B Septin-6, protein NEDD5 99.1 2.1E-10 7.3E-15 86.3 8.6 143 7-156 35-217 (427)
216 3h2y_A GTPase family protein; 99.1 4.6E-11 1.6E-15 88.9 4.4 102 66-174 55-159 (368)
217 3sop_A Neuronal-specific septi 99.1 1.6E-09 5.4E-14 77.4 11.8 116 12-132 2-158 (270)
218 1puj_A YLQF, conserved hypothe 99.1 3.1E-10 1.1E-14 81.5 8.0 100 63-174 5-105 (282)
219 3ec1_A YQEH GTPase; atnos1, at 99.1 2.2E-11 7.5E-16 90.7 1.1 116 12-133 162-293 (369)
220 3ec1_A YQEH GTPase; atnos1, at 99.1 8.9E-11 3.1E-15 87.4 4.3 103 66-175 57-162 (369)
221 3h2y_A GTPase family protein; 99.0 1.1E-10 3.7E-15 87.0 2.7 120 12-139 160-298 (368)
222 2v3c_C SRP54, signal recogniti 98.8 6.1E-10 2.1E-14 84.4 0.9 153 11-171 98-307 (432)
223 1puj_A YLQF, conserved hypothe 98.8 6.4E-09 2.2E-13 74.7 4.9 56 10-68 118-176 (282)
224 3szr_A Interferon-induced GTP- 98.7 5E-08 1.7E-12 77.1 9.2 23 14-36 47-69 (608)
225 3cnl_A YLQF, putative uncharac 98.7 6.5E-09 2.2E-13 73.9 2.6 55 13-69 100-156 (262)
226 3dm5_A SRP54, signal recogniti 98.7 1E-08 3.5E-13 77.6 3.6 112 11-129 99-254 (443)
227 1f5n_A Interferon-induced guan 98.6 6.2E-08 2.1E-12 75.9 6.6 59 10-68 36-102 (592)
228 3cnl_A YLQF, putative uncharac 98.5 3.7E-08 1.3E-12 70.0 2.5 93 64-171 4-97 (262)
229 3kl4_A SRP54, signal recogniti 98.5 6.7E-08 2.3E-12 73.1 3.5 111 11-128 96-252 (433)
230 1j8m_F SRP54, signal recogniti 98.4 1.9E-07 6.7E-12 67.4 4.6 109 12-128 98-253 (297)
231 1t9h_A YLOQ, probable GTPase E 98.4 1.8E-07 6.1E-12 67.8 3.3 85 76-168 82-170 (307)
232 1bif_A 6-phosphofructo-2-kinas 98.2 3.5E-07 1.2E-11 70.2 0.7 96 9-106 36-145 (469)
233 2rcn_A Probable GTPase ENGC; Y 98.1 1.1E-05 3.9E-10 59.6 7.7 83 78-169 128-213 (358)
234 2xxa_A Signal recognition part 98.1 3.7E-05 1.3E-09 58.4 10.5 112 10-129 98-255 (433)
235 3q5d_A Atlastin-1; G protein, 97.9 2.4E-05 8.1E-10 59.5 7.0 26 9-34 64-89 (447)
236 1ye8_A Protein THEP1, hypothet 97.9 6.9E-06 2.4E-10 54.9 3.2 22 13-34 1-22 (178)
237 1np6_A Molybdopterin-guanine d 97.9 4.2E-05 1.4E-09 50.8 6.9 22 13-34 7-28 (174)
238 4gp7_A Metallophosphoesterase; 97.9 7.1E-06 2.4E-10 54.4 3.1 29 5-33 2-30 (171)
239 1z6g_A Guanylate kinase; struc 97.9 6.1E-06 2.1E-10 56.9 2.7 33 3-35 14-46 (218)
240 3tif_A Uncharacterized ABC tra 97.9 1E-05 3.5E-10 56.5 3.5 32 3-34 22-53 (235)
241 2pcj_A ABC transporter, lipopr 97.8 1.1E-05 3.8E-10 55.9 3.3 32 3-34 21-52 (224)
242 2cbz_A Multidrug resistance-as 97.8 1.4E-05 4.9E-10 55.8 3.5 32 3-34 22-53 (237)
243 1mv5_A LMRA, multidrug resista 97.8 1.6E-05 5.5E-10 55.7 3.8 32 3-34 19-50 (243)
244 4eun_A Thermoresistant glucoki 97.8 1.4E-05 4.8E-10 54.2 3.4 28 7-34 24-51 (200)
245 3gfo_A Cobalt import ATP-bindi 97.8 1.5E-05 5E-10 57.0 3.4 32 3-34 25-56 (275)
246 2onk_A Molybdate/tungstate ABC 97.8 1.9E-05 6.4E-10 55.3 3.8 32 3-35 16-47 (240)
247 2ff7_A Alpha-hemolysin translo 97.8 1.6E-05 5.3E-10 56.0 3.4 33 3-35 26-58 (247)
248 1b0u_A Histidine permease; ABC 97.8 1.7E-05 5.8E-10 56.3 3.5 32 3-34 23-54 (262)
249 2jeo_A Uridine-cytidine kinase 97.8 1.6E-05 5.4E-10 55.8 3.3 32 3-34 16-47 (245)
250 1g6h_A High-affinity branched- 97.8 1.6E-05 5.6E-10 56.2 3.4 33 3-35 24-56 (257)
251 2pze_A Cystic fibrosis transme 97.8 1.7E-05 5.8E-10 55.1 3.4 32 4-35 26-57 (229)
252 4dzz_A Plasmid partitioning pr 97.8 0.00016 5.4E-09 49.0 8.2 70 55-128 74-144 (206)
253 1zp6_A Hypothetical protein AT 97.8 1.8E-05 6.3E-10 53.1 3.4 26 10-35 7-32 (191)
254 3vaa_A Shikimate kinase, SK; s 97.8 1.8E-05 6E-10 53.7 3.4 30 4-33 17-46 (199)
255 2olj_A Amino acid ABC transpor 97.8 1.8E-05 6.3E-10 56.1 3.5 32 3-34 41-72 (263)
256 1kgd_A CASK, peripheral plasma 97.8 1.6E-05 5.5E-10 53.1 3.1 22 13-34 6-27 (180)
257 4g1u_C Hemin import ATP-bindin 97.8 1.7E-05 5.9E-10 56.3 3.4 32 3-34 28-59 (266)
258 1sgw_A Putative ABC transporte 97.8 1.5E-05 5.1E-10 54.8 3.0 33 3-35 26-58 (214)
259 3tr0_A Guanylate kinase, GMP k 97.7 1.8E-05 6.1E-10 53.7 3.3 25 11-35 6-30 (205)
260 2qi9_C Vitamin B12 import ATP- 97.7 2E-05 6.8E-10 55.5 3.5 33 3-35 17-49 (249)
261 2ihy_A ABC transporter, ATP-bi 97.7 2E-05 6.7E-10 56.4 3.4 32 3-34 38-69 (279)
262 1ji0_A ABC transporter; ATP bi 97.7 2E-05 6.8E-10 55.2 3.4 33 3-35 23-55 (240)
263 2ghi_A Transport protein; mult 97.7 2.1E-05 7.1E-10 55.7 3.5 33 3-35 37-69 (260)
264 2zu0_C Probable ATP-dependent 97.7 2.3E-05 7.9E-10 55.7 3.7 33 3-35 37-69 (267)
265 2d2e_A SUFC protein; ABC-ATPas 97.7 2.2E-05 7.4E-10 55.3 3.5 33 3-35 20-52 (250)
266 3c8u_A Fructokinase; YP_612366 97.7 2.1E-05 7E-10 53.8 3.3 26 9-34 19-44 (208)
267 1vpl_A ABC transporter, ATP-bi 97.7 2.3E-05 7.7E-10 55.4 3.5 33 3-35 32-64 (256)
268 2ixe_A Antigen peptide transpo 97.7 2.4E-05 8E-10 55.8 3.6 33 3-35 36-68 (271)
269 1y63_A LMAJ004144AAA protein; 97.7 2.5E-05 8.5E-10 52.3 3.5 31 5-35 3-33 (184)
270 1lvg_A Guanylate kinase, GMP k 97.7 1.8E-05 6.1E-10 53.7 2.7 23 12-34 4-26 (198)
271 1htw_A HI0065; nucleotide-bind 97.7 2.4E-05 8.2E-10 51.2 3.2 31 6-36 27-57 (158)
272 2nq2_C Hypothetical ABC transp 97.7 2.5E-05 8.5E-10 55.1 3.4 32 4-35 23-54 (253)
273 3lnc_A Guanylate kinase, GMP k 97.7 1.4E-05 4.9E-10 55.4 2.1 33 3-35 18-51 (231)
274 2yz2_A Putative ABC transporte 97.7 2.6E-05 9E-10 55.4 3.5 31 4-34 25-55 (266)
275 2ffh_A Protein (FFH); SRP54, s 97.7 2.4E-05 8.2E-10 59.1 3.4 23 11-33 97-119 (425)
276 3ney_A 55 kDa erythrocyte memb 97.7 3E-05 1E-09 52.5 3.5 30 6-35 13-42 (197)
277 2j41_A Guanylate kinase; GMP, 97.7 2.9E-05 9.8E-10 52.7 3.4 27 10-36 4-30 (207)
278 3a00_A Guanylate kinase, GMP k 97.7 2.4E-05 8.2E-10 52.5 2.8 20 15-34 4-23 (186)
279 2v9p_A Replication protein E1; 97.7 1.7E-05 5.8E-10 57.4 2.2 31 4-34 118-148 (305)
280 3asz_A Uridine kinase; cytidin 97.6 3E-05 1E-09 52.9 3.3 25 10-34 4-28 (211)
281 2qor_A Guanylate kinase; phosp 97.6 2.8E-05 9.7E-10 52.9 3.1 26 9-34 9-34 (204)
282 1znw_A Guanylate kinase, GMP k 97.6 2.7E-05 9.3E-10 53.1 2.9 28 8-35 16-43 (207)
283 3nh6_A ATP-binding cassette SU 97.6 2E-05 6.8E-10 57.1 2.2 32 3-34 71-102 (306)
284 2bbs_A Cystic fibrosis transme 97.6 3.6E-05 1.2E-09 55.4 3.4 32 3-34 55-86 (290)
285 3ec2_A DNA replication protein 97.6 3.4E-05 1.2E-09 51.3 3.0 27 8-34 34-60 (180)
286 2pjz_A Hypothetical protein ST 97.6 4.4E-05 1.5E-09 54.1 3.6 31 4-35 23-53 (263)
287 3fvq_A Fe(3+) IONS import ATP- 97.6 4.7E-05 1.6E-09 56.3 3.6 32 3-34 21-52 (359)
288 3tui_C Methionine import ATP-b 97.6 5.1E-05 1.7E-09 56.2 3.7 32 3-34 45-76 (366)
289 1kag_A SKI, shikimate kinase I 97.6 4.3E-05 1.5E-09 50.3 3.1 22 13-34 5-26 (173)
290 2bbw_A Adenylate kinase 4, AK4 97.5 5.1E-05 1.8E-09 53.1 3.4 22 12-33 27-48 (246)
291 3lw7_A Adenylate kinase relate 97.5 5E-05 1.7E-09 49.9 3.2 20 13-32 2-21 (179)
292 3cm0_A Adenylate kinase; ATP-b 97.5 6.3E-05 2.1E-09 50.2 3.7 23 11-33 3-25 (186)
293 3rlf_A Maltose/maltodextrin im 97.5 5.7E-05 2E-09 56.3 3.7 32 3-34 20-51 (381)
294 1z47_A CYSA, putative ABC-tran 97.5 5.4E-05 1.8E-09 55.9 3.5 33 3-35 32-64 (355)
295 2yyz_A Sugar ABC transporter, 97.5 5.7E-05 2E-09 55.9 3.7 32 3-34 20-51 (359)
296 1s96_A Guanylate kinase, GMP k 97.5 5.1E-05 1.7E-09 52.3 3.2 26 10-35 14-39 (219)
297 1ly1_A Polynucleotide kinase; 97.5 6E-05 2.1E-09 49.9 3.5 22 13-34 3-24 (181)
298 2it1_A 362AA long hypothetical 97.5 6E-05 2E-09 55.9 3.7 33 3-35 20-52 (362)
299 3kb2_A SPBC2 prophage-derived 97.5 5.7E-05 2E-09 49.6 3.2 21 14-34 3-23 (173)
300 2x8a_A Nuclear valosin-contain 97.5 4.3E-05 1.5E-09 54.5 2.7 27 6-34 40-66 (274)
301 3fb4_A Adenylate kinase; psych 97.5 5.9E-05 2E-09 51.6 3.3 21 13-33 1-21 (216)
302 1v43_A Sugar-binding transport 97.5 6.6E-05 2.3E-09 55.8 3.7 33 3-35 28-60 (372)
303 2bdt_A BH3686; alpha-beta prot 97.5 5.5E-05 1.9E-09 50.7 3.0 21 14-34 4-24 (189)
304 3dl0_A Adenylate kinase; phosp 97.5 6.3E-05 2.1E-09 51.5 3.3 21 13-33 1-21 (216)
305 3tau_A Guanylate kinase, GMP k 97.5 6.9E-05 2.4E-09 51.2 3.4 25 11-35 7-31 (208)
306 3gd7_A Fusion complex of cysti 97.5 7.1E-05 2.4E-09 56.0 3.6 32 3-34 38-69 (390)
307 1ex7_A Guanylate kinase; subst 97.5 6.5E-05 2.2E-09 50.4 3.1 20 15-34 4-23 (186)
308 1g29_1 MALK, maltose transport 97.5 7E-05 2.4E-09 55.7 3.5 32 4-35 21-52 (372)
309 1cke_A CK, MSSA, protein (cyti 97.5 7.3E-05 2.5E-09 51.5 3.4 23 12-34 5-27 (227)
310 2rcn_A Probable GTPase ENGC; Y 97.5 6.7E-05 2.3E-09 55.4 3.4 24 13-36 216-239 (358)
311 2rhm_A Putative kinase; P-loop 97.5 8.3E-05 2.9E-09 49.8 3.5 24 11-34 4-27 (193)
312 3tlx_A Adenylate kinase 2; str 97.5 8.7E-05 3E-09 52.0 3.6 24 10-33 27-50 (243)
313 2if2_A Dephospho-COA kinase; a 97.5 7.8E-05 2.7E-09 50.5 3.3 21 14-34 3-23 (204)
314 3uie_A Adenylyl-sulfate kinase 97.5 7.7E-05 2.6E-09 50.5 3.2 26 9-34 22-47 (200)
315 1knq_A Gluconate kinase; ALFA/ 97.5 9E-05 3.1E-09 49.0 3.5 23 12-34 8-30 (175)
316 2cdn_A Adenylate kinase; phosp 97.5 9.3E-05 3.2E-09 50.1 3.6 26 9-34 17-42 (201)
317 1aky_A Adenylate kinase; ATP:A 97.5 8.3E-05 2.8E-09 51.1 3.4 23 11-33 3-25 (220)
318 2i3b_A HCR-ntpase, human cance 97.5 6.4E-05 2.2E-09 50.6 2.7 21 14-34 3-23 (189)
319 3sr0_A Adenylate kinase; phosp 97.4 8.3E-05 2.9E-09 50.8 3.3 21 13-33 1-21 (206)
320 3aez_A Pantothenate kinase; tr 97.4 8.6E-05 2.9E-09 54.0 3.5 26 9-34 87-112 (312)
321 1kht_A Adenylate kinase; phosp 97.4 8.6E-05 3E-09 49.6 3.3 23 12-34 3-25 (192)
322 3d31_A Sulfate/molybdate ABC t 97.4 5.5E-05 1.9E-09 55.8 2.4 33 3-35 17-49 (348)
323 2qt1_A Nicotinamide riboside k 97.4 0.0001 3.6E-09 50.1 3.7 26 10-35 19-44 (207)
324 2eyu_A Twitching motility prot 97.4 7.4E-05 2.5E-09 52.9 2.9 26 9-34 22-47 (261)
325 1jjv_A Dephospho-COA kinase; P 97.4 9.6E-05 3.3E-09 50.2 3.4 22 13-34 3-24 (206)
326 3b85_A Phosphate starvation-in 97.4 6.9E-05 2.3E-09 51.3 2.6 25 11-35 21-45 (208)
327 3t61_A Gluconokinase; PSI-biol 97.4 8.4E-05 2.9E-09 50.4 3.0 23 12-34 18-40 (202)
328 1tev_A UMP-CMP kinase; ploop, 97.4 0.0001 3.6E-09 49.3 3.5 22 12-33 3-24 (196)
329 1nks_A Adenylate kinase; therm 97.4 0.0001 3.6E-09 49.2 3.4 21 14-34 3-23 (194)
330 2jaq_A Deoxyguanosine kinase; 97.4 0.0001 3.4E-09 49.8 3.3 21 14-34 2-22 (205)
331 2ehv_A Hypothetical protein PH 97.4 9.2E-05 3.1E-09 51.6 3.1 25 9-33 27-51 (251)
332 1qhx_A CPT, protein (chloramph 97.4 0.0001 3.4E-09 48.8 3.1 22 13-34 4-25 (178)
333 1ukz_A Uridylate kinase; trans 97.4 0.00013 4.5E-09 49.4 3.7 26 8-33 11-36 (203)
334 1e4v_A Adenylate kinase; trans 97.4 0.0001 3.6E-09 50.4 3.2 22 13-34 1-22 (214)
335 1ixz_A ATP-dependent metallopr 97.4 8.2E-05 2.8E-09 52.2 2.7 20 15-34 52-71 (254)
336 2plr_A DTMP kinase, probable t 97.4 0.00012 4.1E-09 49.7 3.5 23 12-34 4-26 (213)
337 3end_A Light-independent proto 97.4 0.0014 4.7E-08 47.3 9.2 81 56-140 156-237 (307)
338 1zd8_A GTP:AMP phosphotransfer 97.4 0.00011 3.8E-09 50.8 3.3 23 11-33 6-28 (227)
339 1oxx_K GLCV, glucose, ABC tran 97.4 5.3E-05 1.8E-09 56.0 1.7 32 4-35 23-54 (353)
340 1lw7_A Transcriptional regulat 97.4 9.4E-05 3.2E-09 54.9 3.0 29 6-34 162-192 (365)
341 2v54_A DTMP kinase, thymidylat 97.4 0.00013 4.3E-09 49.4 3.5 24 12-35 4-27 (204)
342 2c95_A Adenylate kinase 1; tra 97.4 0.00012 4.2E-09 49.1 3.3 23 11-33 8-30 (196)
343 2gza_A Type IV secretion syste 97.4 3.3E-05 1.1E-09 57.3 0.4 30 5-34 168-197 (361)
344 3b9q_A Chloroplast SRP recepto 97.4 0.00014 4.7E-09 52.6 3.7 30 5-34 93-122 (302)
345 3trf_A Shikimate kinase, SK; a 97.3 0.00013 4.5E-09 48.6 3.3 22 12-33 5-26 (185)
346 2yvu_A Probable adenylyl-sulfa 97.3 0.00017 5.7E-09 48.2 3.8 25 9-33 10-34 (186)
347 1nn5_A Similar to deoxythymidy 97.3 0.00014 4.8E-09 49.6 3.4 24 11-34 8-31 (215)
348 4a74_A DNA repair and recombin 97.3 0.00012 4E-09 50.4 3.0 25 10-34 23-47 (231)
349 1t9h_A YLOQ, probable GTPase E 97.3 3.6E-05 1.2E-09 55.7 0.4 26 10-35 171-196 (307)
350 1u0l_A Probable GTPase ENGC; p 97.3 0.00014 4.8E-09 52.5 3.5 24 12-35 169-192 (301)
351 2yv5_A YJEQ protein; hydrolase 97.3 0.00012 4E-09 53.0 3.0 22 12-33 165-186 (302)
352 2wwf_A Thymidilate kinase, put 97.3 0.00014 4.9E-09 49.4 3.3 24 11-34 9-32 (212)
353 1zak_A Adenylate kinase; ATP:A 97.3 0.00012 4.1E-09 50.4 2.9 23 11-33 4-26 (222)
354 3tqc_A Pantothenate kinase; bi 97.3 0.00016 5.5E-09 52.7 3.7 24 10-33 90-113 (321)
355 1via_A Shikimate kinase; struc 97.3 0.00012 4.3E-09 48.3 2.9 20 14-33 6-25 (175)
356 1rz3_A Hypothetical protein rb 97.3 0.00017 5.8E-09 48.9 3.6 26 9-34 19-44 (201)
357 2pt5_A Shikimate kinase, SK; a 97.3 0.00016 5.4E-09 47.4 3.3 21 14-34 2-22 (168)
358 1uf9_A TT1252 protein; P-loop, 97.3 0.00017 5.9E-09 48.6 3.5 26 10-35 6-31 (203)
359 3be4_A Adenylate kinase; malar 97.3 0.00018 6E-09 49.4 3.4 23 11-33 4-26 (217)
360 1iy2_A ATP-dependent metallopr 97.3 0.00012 4.2E-09 52.1 2.8 21 15-35 76-96 (278)
361 2bwj_A Adenylate kinase 5; pho 97.3 0.00014 4.7E-09 48.9 2.9 24 11-34 11-34 (199)
362 1qf9_A UMP/CMP kinase, protein 97.3 0.0002 7E-09 47.8 3.7 23 12-34 6-28 (194)
363 1gvn_B Zeta; postsegregational 97.3 0.00018 6.1E-09 51.7 3.5 26 9-34 30-55 (287)
364 4e22_A Cytidylate kinase; P-lo 97.3 0.00017 5.9E-09 50.7 3.4 23 11-33 26-48 (252)
365 2xb4_A Adenylate kinase; ATP-b 97.3 0.00017 5.9E-09 49.7 3.3 20 14-33 2-21 (223)
366 3iij_A Coilin-interacting nucl 97.3 0.00017 5.7E-09 47.9 3.1 23 11-33 10-32 (180)
367 1sq5_A Pantothenate kinase; P- 97.3 0.00018 6E-09 52.2 3.5 25 10-34 78-102 (308)
368 3b60_A Lipid A export ATP-bind 97.3 0.00017 5.7E-09 56.9 3.5 32 3-34 360-391 (582)
369 2pez_A Bifunctional 3'-phospho 97.3 0.00021 7.2E-09 47.4 3.5 25 10-34 3-27 (179)
370 3jvv_A Twitching mobility prot 97.3 0.00014 4.8E-09 53.8 2.9 22 13-34 124-145 (356)
371 2oap_1 GSPE-2, type II secreti 97.3 5.1E-05 1.7E-09 58.8 0.6 28 7-34 255-282 (511)
372 2vli_A Antibiotic resistance p 97.3 0.00012 4.2E-09 48.5 2.3 24 11-34 4-27 (183)
373 2yhs_A FTSY, cell division pro 97.3 0.00019 6.5E-09 55.2 3.6 31 4-34 285-315 (503)
374 2kjq_A DNAA-related protein; s 97.2 0.00012 4.1E-09 47.3 2.1 23 12-34 36-58 (149)
375 1odf_A YGR205W, hypothetical 3 97.2 0.00022 7.7E-09 51.2 3.7 25 9-33 28-52 (290)
376 2pt7_A CAG-ALFA; ATPase, prote 97.2 8E-05 2.7E-09 54.6 1.3 30 6-35 165-194 (330)
377 1vht_A Dephospho-COA kinase; s 97.2 0.00024 8E-09 48.7 3.6 23 12-34 4-26 (218)
378 1uj2_A Uridine-cytidine kinase 97.2 0.00022 7.4E-09 50.1 3.5 27 8-34 18-44 (252)
379 2og2_A Putative signal recogni 97.2 0.00022 7.6E-09 52.8 3.6 30 5-34 150-179 (359)
380 2pbr_A DTMP kinase, thymidylat 97.2 0.00021 7.2E-09 47.8 3.2 21 14-34 2-22 (195)
381 2p5t_B PEZT; postsegregational 97.2 0.00015 5E-09 51.1 2.5 26 9-34 29-54 (253)
382 1ak2_A Adenylate kinase isoenz 97.2 0.00023 7.8E-09 49.4 3.5 24 10-33 14-37 (233)
383 3b5x_A Lipid A export ATP-bind 97.2 0.0002 6.7E-09 56.5 3.4 32 3-34 360-391 (582)
384 3cwq_A Para family chromosome 97.2 0.0022 7.4E-08 43.7 8.2 68 55-128 66-134 (209)
385 2yl4_A ATP-binding cassette SU 97.2 0.00017 5.7E-09 57.1 2.8 32 3-34 361-392 (595)
386 2vp4_A Deoxynucleoside kinase; 97.2 0.00021 7.2E-09 49.5 3.1 28 8-35 16-43 (230)
387 3kta_A Chromosome segregation 97.2 0.0003 1E-08 46.7 3.7 28 6-34 21-48 (182)
388 2z0h_A DTMP kinase, thymidylat 97.2 0.00025 8.5E-09 47.6 3.3 21 14-34 2-22 (197)
389 2ze6_A Isopentenyl transferase 97.2 0.00022 7.5E-09 50.2 3.1 21 14-34 3-23 (253)
390 2f1r_A Molybdopterin-guanine d 97.2 0.0001 3.4E-09 48.9 1.2 20 14-33 4-23 (171)
391 1jbk_A CLPB protein; beta barr 97.2 0.00026 8.7E-09 47.0 3.3 24 11-34 42-65 (195)
392 3nwj_A ATSK2; P loop, shikimat 97.2 0.0001 3.5E-09 51.9 1.3 30 5-34 38-70 (250)
393 3r20_A Cytidylate kinase; stru 97.2 0.00026 8.9E-09 49.2 3.3 23 11-33 8-30 (233)
394 1zuh_A Shikimate kinase; alpha 97.2 0.00027 9.3E-09 46.3 3.3 21 14-34 9-29 (168)
395 3qf4_B Uncharacterized ABC tra 97.2 0.00019 6.5E-09 56.8 2.9 32 3-34 372-403 (598)
396 3a4m_A L-seryl-tRNA(SEC) kinas 97.2 0.00028 9.7E-09 49.8 3.5 23 12-34 4-26 (260)
397 2npi_A Protein CLP1; CLP1-PCF1 97.2 0.00015 5.1E-09 55.5 2.2 30 5-34 131-160 (460)
398 1e6c_A Shikimate kinase; phosp 97.2 0.00027 9.1E-09 46.5 3.1 21 14-34 4-24 (173)
399 2f6r_A COA synthase, bifunctio 97.1 0.00032 1.1E-08 50.2 3.7 25 9-33 72-96 (281)
400 4a82_A Cystic fibrosis transme 97.1 0.00015 5.3E-09 57.0 2.1 32 3-34 358-389 (578)
401 1rj9_A FTSY, signal recognitio 97.1 0.00023 8E-09 51.5 2.9 23 11-33 101-123 (304)
402 2iyv_A Shikimate kinase, SK; t 97.1 0.00028 9.5E-09 47.0 3.0 21 14-34 4-24 (184)
403 2ewv_A Twitching motility prot 97.1 0.00026 8.8E-09 52.7 3.1 25 10-34 134-158 (372)
404 3umf_A Adenylate kinase; rossm 97.1 0.00038 1.3E-08 47.9 3.6 20 14-33 31-50 (217)
405 3e70_C DPA, signal recognition 97.1 0.00034 1.2E-08 51.2 3.5 25 10-34 127-151 (328)
406 3qf4_A ABC transporter, ATP-bi 97.1 0.00022 7.4E-09 56.3 2.6 32 3-34 360-391 (587)
407 1p9r_A General secretion pathw 97.1 0.00025 8.7E-09 53.6 2.9 23 12-34 167-189 (418)
408 1m7g_A Adenylylsulfate kinase; 97.1 0.00035 1.2E-08 47.7 3.3 26 8-33 21-46 (211)
409 3euj_A Chromosome partition pr 97.1 0.00038 1.3E-08 53.5 3.7 30 4-34 22-51 (483)
410 2w0m_A SSO2452; RECA, SSPF, un 97.1 0.00031 1.1E-08 48.3 3.0 24 10-33 21-44 (235)
411 3qf7_A RAD50; ABC-ATPase, ATPa 97.1 0.00044 1.5E-08 51.3 4.0 28 5-33 17-44 (365)
412 1xjc_A MOBB protein homolog; s 97.1 0.00035 1.2E-08 46.1 3.1 22 13-34 5-26 (169)
413 4eaq_A DTMP kinase, thymidylat 97.1 0.00044 1.5E-08 48.0 3.7 25 10-34 24-48 (229)
414 1gtv_A TMK, thymidylate kinase 97.1 0.00011 3.9E-09 50.0 0.7 20 14-33 2-21 (214)
415 1in4_A RUVB, holliday junction 97.1 0.00029 1E-08 51.6 2.9 22 13-34 52-73 (334)
416 1svm_A Large T antigen; AAA+ f 97.0 0.0004 1.4E-08 51.8 3.2 29 6-34 163-191 (377)
417 2p65_A Hypothetical protein PF 97.0 0.0003 1E-08 46.5 2.4 24 11-34 42-65 (187)
418 2iw3_A Elongation factor 3A; a 97.0 0.00046 1.6E-08 57.3 3.7 35 3-37 452-486 (986)
419 2grj_A Dephospho-COA kinase; T 97.0 0.0006 2.1E-08 46.0 3.7 25 10-34 10-34 (192)
420 3bos_A Putative DNA replicatio 97.0 0.00048 1.6E-08 47.5 3.3 24 11-34 51-74 (242)
421 1f2t_A RAD50 ABC-ATPase; DNA d 97.0 0.00052 1.8E-08 44.3 3.1 23 10-33 22-44 (149)
422 1lv7_A FTSH; alpha/beta domain 97.0 0.00054 1.8E-08 48.1 3.4 23 12-34 45-67 (257)
423 1cr0_A DNA primase/helicase; R 97.0 0.00045 1.5E-08 49.6 3.0 28 7-34 30-57 (296)
424 2cvh_A DNA repair and recombin 97.0 0.00049 1.7E-08 46.9 3.0 25 10-34 18-42 (220)
425 3n70_A Transport activator; si 96.9 0.0005 1.7E-08 44.0 2.8 26 10-35 22-47 (145)
426 1yqt_A RNAse L inhibitor; ATP- 96.9 0.00058 2E-08 53.3 3.6 28 8-35 43-70 (538)
427 2w58_A DNAI, primosome compone 96.9 0.00059 2E-08 46.1 3.3 22 13-34 55-76 (202)
428 1n0w_A DNA repair protein RAD5 96.9 0.00054 1.8E-08 47.5 3.1 25 10-34 22-46 (243)
429 3t15_A Ribulose bisphosphate c 96.9 0.0006 2.1E-08 49.0 3.4 25 10-34 34-58 (293)
430 2obl_A ESCN; ATPase, hydrolase 96.9 0.0005 1.7E-08 50.7 3.0 29 7-35 66-94 (347)
431 1ltq_A Polynucleotide kinase; 96.9 0.00065 2.2E-08 48.8 3.5 22 13-34 3-24 (301)
432 1q3t_A Cytidylate kinase; nucl 96.9 0.00066 2.3E-08 47.1 3.4 25 10-34 14-38 (236)
433 4f4c_A Multidrug resistance pr 96.9 0.00035 1.2E-08 60.0 2.4 32 2-33 1095-1126(1321)
434 3gmt_A Adenylate kinase; ssgci 96.9 0.00075 2.5E-08 46.8 3.3 23 11-33 7-29 (230)
435 4aby_A DNA repair protein RECN 96.8 0.00021 7.2E-09 53.8 0.4 30 3-33 52-81 (415)
436 1yqt_A RNAse L inhibitor; ATP- 96.8 0.00067 2.3E-08 53.0 3.2 27 9-35 309-335 (538)
437 1nij_A Hypothetical protein YJ 96.8 0.00055 1.9E-08 49.8 2.5 22 14-35 6-27 (318)
438 1tue_A Replication protein E1; 96.8 0.00062 2.1E-08 46.3 2.5 23 12-34 58-80 (212)
439 2chg_A Replication factor C sm 96.8 0.00075 2.6E-08 45.8 3.0 21 14-34 40-60 (226)
440 2dpy_A FLII, flagellum-specifi 96.8 0.00075 2.6E-08 51.3 3.3 29 7-35 152-180 (438)
441 3h4m_A Proteasome-activating n 96.8 0.00084 2.9E-08 47.8 3.4 25 10-34 49-73 (285)
442 3ozx_A RNAse L inhibitor; ATP 96.8 0.00067 2.3E-08 52.9 3.0 27 9-35 291-317 (538)
443 2qz4_A Paraplegin; AAA+, SPG7, 96.8 0.00091 3.1E-08 46.9 3.5 25 10-34 37-61 (262)
444 1njg_A DNA polymerase III subu 96.8 0.00075 2.6E-08 46.3 3.0 21 14-34 47-67 (250)
445 3b9p_A CG5977-PA, isoform A; A 96.8 0.00073 2.5E-08 48.4 2.9 23 12-34 54-76 (297)
446 3bk7_A ABC transporter ATP-bin 96.8 0.00078 2.7E-08 53.3 3.2 27 9-35 379-405 (607)
447 4f4c_A Multidrug resistance pr 96.8 0.00078 2.7E-08 57.9 3.4 32 3-34 435-466 (1321)
448 3cf0_A Transitional endoplasmi 96.8 0.00084 2.9E-08 48.4 3.2 25 10-34 47-71 (301)
449 3syl_A Protein CBBX; photosynt 96.8 0.00096 3.3E-08 48.0 3.5 24 10-33 65-88 (309)
450 1nlf_A Regulatory protein REPA 96.8 0.00083 2.8E-08 47.8 3.0 24 11-34 29-52 (279)
451 2iw3_A Elongation factor 3A; a 96.7 0.00046 1.6E-08 57.3 1.7 33 3-35 690-722 (986)
452 1vma_A Cell division protein F 96.7 0.0013 4.3E-08 47.7 3.9 25 9-33 101-125 (306)
453 3qkt_A DNA double-strand break 96.7 0.0013 4.5E-08 48.3 4.0 27 6-33 18-44 (339)
454 3ake_A Cytidylate kinase; CMP 96.7 0.0011 3.6E-08 44.9 3.3 21 14-34 4-24 (208)
455 3ozx_A RNAse L inhibitor; ATP 96.7 0.00099 3.4E-08 52.0 3.4 25 11-35 24-48 (538)
456 3j16_B RLI1P; ribosome recycli 96.7 0.00089 3E-08 53.0 3.1 26 10-35 101-126 (608)
457 1d2n_A N-ethylmaleimide-sensit 96.7 0.0013 4.6E-08 46.5 3.7 26 9-34 61-86 (272)
458 3bk7_A ABC transporter ATP-bin 96.7 0.0011 3.7E-08 52.5 3.5 27 9-35 114-140 (607)
459 3g5u_A MCG1178, multidrug resi 96.7 0.00088 3E-08 57.5 3.2 32 3-34 407-438 (1284)
460 2dhr_A FTSH; AAA+ protein, hex 96.7 0.00094 3.2E-08 51.6 3.0 21 14-34 66-86 (499)
461 2dr3_A UPF0273 protein PH0284; 96.7 0.0011 3.6E-08 46.1 3.0 23 11-33 22-44 (247)
462 1l8q_A Chromosomal replication 96.7 0.001 3.4E-08 48.4 3.0 23 12-34 37-59 (324)
463 1c9k_A COBU, adenosylcobinamid 96.7 0.0012 4.2E-08 43.9 3.0 21 15-35 2-22 (180)
464 3co5_A Putative two-component 96.6 0.00055 1.9E-08 43.7 1.3 24 10-33 25-48 (143)
465 2o5v_A DNA replication and rep 96.6 0.0016 5.5E-08 48.2 3.9 30 4-34 19-48 (359)
466 3zvl_A Bifunctional polynucleo 96.6 0.0013 4.6E-08 49.6 3.5 25 10-34 256-280 (416)
467 3ux8_A Excinuclease ABC, A sub 96.6 0.0008 2.7E-08 53.9 2.2 30 3-32 339-368 (670)
468 4b4t_K 26S protease regulatory 96.6 0.0012 4.1E-08 50.0 3.1 25 10-34 204-228 (428)
469 4b4t_M 26S protease regulatory 96.6 0.0012 4.3E-08 50.0 3.2 26 9-34 212-237 (434)
470 1zu4_A FTSY; GTPase, signal re 96.6 0.0018 6.2E-08 47.2 3.8 30 4-33 97-126 (320)
471 1pzn_A RAD51, DNA repair and r 96.6 0.0012 4.2E-08 48.6 3.0 27 9-35 128-154 (349)
472 2ocp_A DGK, deoxyguanosine kin 96.6 0.0016 5.6E-08 45.2 3.5 23 12-34 2-24 (241)
473 2h92_A Cytidylate kinase; ross 96.6 0.0013 4.4E-08 44.9 2.9 23 12-34 3-25 (219)
474 2qmh_A HPR kinase/phosphorylas 96.6 0.0018 6.3E-08 43.8 3.5 26 10-35 32-57 (205)
475 1ofh_A ATP-dependent HSL prote 96.6 0.0013 4.6E-08 47.1 3.0 24 11-34 49-72 (310)
476 4ido_A Atlastin-1; GTPase, GTP 96.6 0.003 1E-07 48.1 5.0 23 11-33 66-88 (457)
477 1p5z_B DCK, deoxycytidine kina 96.6 0.00092 3.1E-08 47.2 2.1 26 9-34 21-46 (263)
478 1a7j_A Phosphoribulokinase; tr 96.6 0.00075 2.6E-08 48.5 1.6 24 11-34 4-27 (290)
479 1xwi_A SKD1 protein; VPS4B, AA 96.5 0.0014 4.6E-08 47.8 2.9 23 12-34 45-67 (322)
480 3j16_B RLI1P; ribosome recycli 96.5 0.0017 5.9E-08 51.4 3.7 22 14-35 380-401 (608)
481 2qby_A CDC6 homolog 1, cell di 96.5 0.0015 5.1E-08 48.2 3.2 25 10-34 43-67 (386)
482 3qks_A DNA double-strand break 96.5 0.0016 5.5E-08 44.2 3.1 23 10-33 22-44 (203)
483 2ga8_A Hypothetical 39.9 kDa p 96.5 0.0021 7E-08 47.4 3.8 23 11-33 23-45 (359)
484 3cr8_A Sulfate adenylyltranfer 96.5 0.0011 3.8E-08 51.8 2.5 26 9-34 366-391 (552)
485 2px0_A Flagellar biosynthesis 96.5 0.0017 5.8E-08 46.8 3.3 23 11-33 104-126 (296)
486 1fnn_A CDC6P, cell division co 96.5 0.0017 5.7E-08 48.2 3.3 21 14-34 46-66 (389)
487 3eie_A Vacuolar protein sortin 96.5 0.0016 5.6E-08 47.3 3.2 23 12-34 51-73 (322)
488 3crm_A TRNA delta(2)-isopenten 96.5 0.0018 6E-08 47.2 3.3 22 13-34 6-27 (323)
489 1sxj_E Activator 1 40 kDa subu 96.5 0.0011 3.9E-08 48.6 2.4 21 14-34 38-58 (354)
490 4fcw_A Chaperone protein CLPB; 96.5 0.0017 5.9E-08 46.7 3.3 22 13-34 48-69 (311)
491 3g5u_A MCG1178, multidrug resi 96.5 0.0015 5E-08 56.1 3.3 32 3-34 1050-1081(1284)
492 4b4t_J 26S protease regulatory 96.5 0.0015 5.2E-08 49.0 2.9 26 9-34 179-204 (405)
493 3d3q_A TRNA delta(2)-isopenten 96.5 0.0017 5.7E-08 47.7 3.0 22 13-34 8-29 (340)
494 4b4t_L 26S protease subunit RP 96.5 0.0017 5.8E-08 49.3 3.2 26 9-34 212-237 (437)
495 1sxj_C Activator 1 40 kDa subu 96.4 0.0017 5.8E-08 47.6 3.0 21 14-34 48-68 (340)
496 2ce7_A Cell division protein F 96.4 0.0016 5.4E-08 50.1 2.9 22 13-34 50-71 (476)
497 2r62_A Cell division protease 96.4 0.00079 2.7E-08 47.5 1.0 22 13-34 45-66 (268)
498 3ux8_A Excinuclease ABC, A sub 96.4 0.0015 5E-08 52.4 2.6 27 3-29 35-61 (670)
499 2v1u_A Cell division control p 96.4 0.0017 5.9E-08 48.0 2.8 25 10-34 42-66 (387)
500 3lda_A DNA repair protein RAD5 96.4 0.0019 6.4E-08 48.6 3.0 23 11-33 177-199 (400)
No 1
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=100.00 E-value=3.6e-36 Score=205.28 Aligned_cols=172 Identities=62% Similarity=1.097 Sum_probs=147.7
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
....++.+||+++|++|||||||++++.++.+.....+|.+.....+...++.+.+||+||++++...+..++..+|+++
T Consensus 16 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 16 PRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp ---CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred ccCCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 34556789999999999999999999999888888888999888888889999999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|+|++++.++.....|+..+.......+.|+++|+||+|+.+....+++.+.++.........+++++||++|.|++++
T Consensus 96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l 175 (188)
T 1zd9_A 96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDIT 175 (188)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHH
Confidence 99999999999999999998877544467999999999999876666777777765545556778999999999999999
Q ss_pred HHHHHHHhhhcC
Q 030429 166 IDWLIKHSKTAK 177 (177)
Q Consensus 166 ~~~l~~~~~~~~ 177 (177)
|++|.+.+.+++
T Consensus 176 ~~~l~~~~~~~~ 187 (188)
T 1zd9_A 176 LQWLIQHSKSRR 187 (188)
T ss_dssp HHHHHHTCC---
T ss_pred HHHHHHHHHhhc
Confidence 999999887653
No 2
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=100.00 E-value=8.1e-36 Score=199.00 Aligned_cols=164 Identities=32% Similarity=0.620 Sum_probs=140.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAAD 92 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 92 (177)
+||+++|++|||||||++++.++.+.. ..+|.+.....+..+++.+.+||+||++++...+..+++++|++++|+|+++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 79 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 79 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCC
Confidence 589999999999999999999877654 4667777777788889999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHHH
Q 030429 93 RDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 172 (177)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 172 (177)
+.++.....|+..+.......+.|+++|+||+|+.+....+++.+.++........++++++||++|.|+++++++|.+.
T Consensus 80 ~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 159 (164)
T 1r8s_A 80 RERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ 159 (164)
T ss_dssp GGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHH
Confidence 99999999999888776445679999999999998776667777777655555566789999999999999999999998
Q ss_pred hhhcC
Q 030429 173 SKTAK 177 (177)
Q Consensus 173 ~~~~~ 177 (177)
+.+++
T Consensus 160 i~~~k 164 (164)
T 1r8s_A 160 LRNQK 164 (164)
T ss_dssp C----
T ss_pred HhhcC
Confidence 87654
No 3
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=100.00 E-value=3.1e-35 Score=197.31 Aligned_cols=167 Identities=34% Similarity=0.658 Sum_probs=145.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
++.++|+++|++|||||||++++.++.+. ...+|.+.....+..++..+.+|||||++++...+..+++.+|++++|+|
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 83 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVD 83 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEE
Confidence 46799999999999999999999987765 35667788877888889999999999999999988999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHH
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 169 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 169 (177)
++++.++.....++..+.......+.|+++|+||+|+.+....+++.+.++........++++++||++|.|+++++++|
T Consensus 84 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 163 (171)
T 1upt_A 84 SCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWL 163 (171)
T ss_dssp TTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHH
Confidence 99999999999999888776444679999999999998876677777777655555567789999999999999999999
Q ss_pred HHHhhhcC
Q 030429 170 IKHSKTAK 177 (177)
Q Consensus 170 ~~~~~~~~ 177 (177)
.+.+.+++
T Consensus 164 ~~~i~~~q 171 (171)
T 1upt_A 164 VETLKSRQ 171 (171)
T ss_dssp HHHHHTCC
T ss_pred HHHHhhcC
Confidence 99987653
No 4
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=100.00 E-value=2e-35 Score=201.05 Aligned_cols=166 Identities=31% Similarity=0.600 Sum_probs=145.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
++.++|+++|++|||||||++++.++. .....+|.+.....+..++..+.+|||||++++...+..+++.+|++++|+|
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 94 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 94 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEE
Confidence 678999999999999999999999877 6667788888888888889999999999999999888899999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHH
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 169 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 169 (177)
++++.+++....|+..+.......+.|+++|+||+|+.+....++..+.++........++++++||++|.|+++++++|
T Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 174 (186)
T 1ksh_A 95 SADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWL 174 (186)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHH
Confidence 99999999999999988776444679999999999998876777777777654444567789999999999999999999
Q ss_pred HHHhhhc
Q 030429 170 IKHSKTA 176 (177)
Q Consensus 170 ~~~~~~~ 176 (177)
.+.+.++
T Consensus 175 ~~~i~~~ 181 (186)
T 1ksh_A 175 LDDISSR 181 (186)
T ss_dssp HHHHHTC
T ss_pred HHHHHhc
Confidence 9988653
No 5
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=100.00 E-value=1.4e-35 Score=201.29 Aligned_cols=166 Identities=33% Similarity=0.601 Sum_probs=140.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
++.++|+++|++|||||||++++.++.+ ....+|.+.....+..+++.+.+|||||++.+...+..++..+|++++|+|
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d 92 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVID 92 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence 5789999999999999999999987644 345567777777778889999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHH
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 169 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 169 (177)
++++.++.....|+..+.......+.|+++|+||+|+.+....+++.+.++........++++++||++|.|++++|++|
T Consensus 93 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 172 (181)
T 1fzq_A 93 SADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 172 (181)
T ss_dssp TTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHH
Confidence 99999999999998888665444678999999999998776666777776654444566789999999999999999999
Q ss_pred HHHhhhc
Q 030429 170 IKHSKTA 176 (177)
Q Consensus 170 ~~~~~~~ 176 (177)
.+.+.++
T Consensus 173 ~~~~~~~ 179 (181)
T 1fzq_A 173 CKNVNAK 179 (181)
T ss_dssp HHTC---
T ss_pred HHHHHhc
Confidence 9987654
No 6
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=100.00 E-value=1.3e-35 Score=203.25 Aligned_cols=169 Identities=31% Similarity=0.605 Sum_probs=141.6
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
+..++.+||+++|++|||||||+++++++.+. ...+|.+.....+..+++.+.+|||||++++...+..++..+|++++
T Consensus 24 ~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iil 102 (192)
T 2b6h_A 24 IFGKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIF 102 (192)
T ss_dssp TTTTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEE
T ss_pred hccCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 45678899999999999999999999977765 34567777777788889999999999999999989999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
|+|++++.+++....|+..+.......+.|+++|+||+|+.+....+++.+.++........++++++||++|.|+++++
T Consensus 103 v~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 182 (192)
T 2b6h_A 103 VVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGL 182 (192)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHH
Confidence 99999999999999999988776544679999999999998776677777777765555567789999999999999999
Q ss_pred HHHHHHhhhc
Q 030429 167 DWLIKHSKTA 176 (177)
Q Consensus 167 ~~l~~~~~~~ 176 (177)
++|.+.+.++
T Consensus 183 ~~l~~~i~~q 192 (192)
T 2b6h_A 183 DWLSHELSKR 192 (192)
T ss_dssp HHHHHHTTTC
T ss_pred HHHHHHHhcC
Confidence 9999988653
No 7
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.3e-35 Score=201.07 Aligned_cols=168 Identities=28% Similarity=0.521 Sum_probs=141.1
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
+..++.++|+++|.+|||||||++++.++.+. ...+|.+.....+..+++.+.+|||||++++...+..+++.+|++++
T Consensus 11 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 89 (187)
T 1zj6_A 11 LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIV 89 (187)
T ss_dssp HHTTSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred hcCCCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 34578899999999999999999999987776 56677777777888889999999999999999888999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
|+|++++++++....|+..+.......+.|+++|+||+|+.+....+++.+.++........++++++||++|.|+++++
T Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 169 (187)
T 1zj6_A 90 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGL 169 (187)
T ss_dssp EEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHH
Confidence 99999999999999999988775434579999999999998766667777776654344556789999999999999999
Q ss_pred HHHHHHhhh
Q 030429 167 DWLIKHSKT 175 (177)
Q Consensus 167 ~~l~~~~~~ 175 (177)
++|.+.+.+
T Consensus 170 ~~l~~~~~~ 178 (187)
T 1zj6_A 170 EWMMSRLKI 178 (187)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHH
Confidence 999998754
No 8
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=1.8e-35 Score=203.19 Aligned_cols=170 Identities=26% Similarity=0.564 Sum_probs=143.5
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSE-DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
-......+|+++|.+|||||||+++|.++.+.. .+.+|.+.....+...++.+.+|||||++++...+..+++.+|+++
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 91 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVI 91 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEE
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEE
Confidence 345678999999999999999999999988887 7788999888888899999999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCC-------CCCcEEEEeeCCCcccccCHHHHHHHhCcccc-cCCceeEEEeeec
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSL-------SGIPLLVLGNKIDKSEALSKQALVDQLGLESI-TDREVCCYMISCK 157 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~ 157 (177)
+|+|++++.++.....|+..+...... .+.|+++|+||+|+.+....+++.+.++.... ....++++++||+
T Consensus 92 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 171 (199)
T 4bas_A 92 FVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGL 171 (199)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTT
T ss_pred EEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCC
Confidence 999999999999999999888665221 27899999999999888777777777765443 4466789999999
Q ss_pred CCCChHHHHHHHHHHhhhc
Q 030429 158 DSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 158 ~~~~i~~l~~~l~~~~~~~ 176 (177)
+|.|++++|++|.+.+.++
T Consensus 172 ~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 172 KGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp TTBTHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHH
Confidence 9999999999999987653
No 9
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=4.5e-36 Score=208.60 Aligned_cols=157 Identities=22% Similarity=0.383 Sum_probs=121.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EE--eCCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
.+.+||+++|++|||||||+++|+.+.+...+.+|.+..... +. ...+.+++|||+|+++|..+...+++++++++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 457999999999999999999999999999989988855443 33 34588999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHH---HHHHHhCcccccCCceeEEEeeecCCC
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQ---ALVDQLGLESITDREVCCYMISCKDSI 160 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (177)
+|||++++.+|+++..|+..+..... .+.|+++|+||+|+.+.. ..+ ++.+.+ +++|++|||++|.
T Consensus 91 lv~di~~~~Sf~~i~~~~~~i~~~~~-~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~--------~~~~~e~SAktg~ 161 (216)
T 4dkx_A 91 VVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQVSIEEGERKAKEL--------NVMFIETSAKAGY 161 (216)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECTTCGGGCCSCHHHHHHHHHHH--------TCEEEEEBTTTTB
T ss_pred EEeecchhHHHHHHHHHHHHHHHhcC-CCCeEEEEeeccchHhcCcccHHHHhhHHHHh--------CCeeEEEeCCCCc
Confidence 99999999999999999998865432 578999999999997643 222 233333 2479999999999
Q ss_pred ChHHHHHHHHHHhhh
Q 030429 161 NIDAVIDWLIKHSKT 175 (177)
Q Consensus 161 ~i~~l~~~l~~~~~~ 175 (177)
||+++|+.|++.+.+
T Consensus 162 nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 162 NVKQLFRRVAAALPG 176 (216)
T ss_dssp SHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999987753
No 10
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=100.00 E-value=3.9e-35 Score=200.18 Aligned_cols=166 Identities=34% Similarity=0.601 Sum_probs=144.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
++.+||+++|++|||||||++++.++.+.. ..+|.+.....+..++..+.+|||||++++...+..+++.+|++++|+|
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 98 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVD 98 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEe
Confidence 688999999999999999999998776653 5567777777888889999999999999988888888999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHH
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 169 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 169 (177)
+++++++.....++..+.......+.|+++|+||+|+.+....+++.+.++........++++++||++|.|+++++++|
T Consensus 99 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 178 (189)
T 2x77_A 99 STDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWL 178 (189)
T ss_dssp TTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHH
Confidence 99999999999999988776555689999999999998876667777777655555567789999999999999999999
Q ss_pred HHHhhhc
Q 030429 170 IKHSKTA 176 (177)
Q Consensus 170 ~~~~~~~ 176 (177)
.+.+.++
T Consensus 179 ~~~i~~~ 185 (189)
T 2x77_A 179 VERLREQ 185 (189)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9988764
No 11
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=4e-35 Score=198.97 Aligned_cols=166 Identities=33% Similarity=0.599 Sum_probs=141.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
++.++|+++|++|||||||++++.++.+ ....+|.+.....+..++..+.+||+||+.++...+..++..+|++++|+|
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 94 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVD 94 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 7889999999999999999999997766 556677787777888889999999999999988888889999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHH
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 169 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 169 (177)
++++.+++....|+..+.......+.|+++|+||+|+.+....+++.+.++........++++++||++|.|+++++++|
T Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 174 (183)
T 1moz_A 95 STDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWL 174 (183)
T ss_dssp TTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHH
Confidence 99999999999999998776545689999999999998776677777777655455566789999999999999999999
Q ss_pred HHHhhhc
Q 030429 170 IKHSKTA 176 (177)
Q Consensus 170 ~~~~~~~ 176 (177)
.+.+.++
T Consensus 175 ~~~~~~~ 181 (183)
T 1moz_A 175 IDVIKEE 181 (183)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9988653
No 12
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=100.00 E-value=4.9e-35 Score=198.52 Aligned_cols=164 Identities=27% Similarity=0.497 Sum_probs=139.6
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
...+.+||+++|.+|||||||++++.++.+ ....+|.+.....+..++..+.+||+||++++...+..+++.+|++++|
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 95 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVV 95 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEE
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 455779999999999999999999998877 5566777777777888899999999999999998888999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
+|++++.++.....|+..+.......+.|+++|+||+|+.+....+++.+.++........++++++||++|.|++++|+
T Consensus 96 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 175 (181)
T 2h17_A 96 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLE 175 (181)
T ss_dssp EETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHH
Confidence 99999999999999999887754346799999999999987666677777776554455667899999999999999999
Q ss_pred HHHHH
Q 030429 168 WLIKH 172 (177)
Q Consensus 168 ~l~~~ 172 (177)
+|.+.
T Consensus 176 ~l~~~ 180 (181)
T 2h17_A 176 WMMSR 180 (181)
T ss_dssp HHHTC
T ss_pred HHHhh
Confidence 99864
No 13
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=100.00 E-value=8e-35 Score=198.85 Aligned_cols=169 Identities=30% Similarity=0.594 Sum_probs=141.3
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGG-YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
...+.+||+++|.+|||||||++++.++. +.....+|.+.....+..++..+.+|||||++++...+..++..+|++++
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIF 96 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 34567999999999999999999999877 56667788888888888889999999999999999988899999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCC--CCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSL--SGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
|+|++++.++.....|+..+...... .+.|+++|+||+|+.+....++..+.+.........++++++||++|.|+++
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 176 (190)
T 2h57_A 97 VIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQE 176 (190)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHH
Confidence 99999998999999999888776544 5789999999999987666667776665444334567899999999999999
Q ss_pred HHHHHHHHhhhc
Q 030429 165 VIDWLIKHSKTA 176 (177)
Q Consensus 165 l~~~l~~~~~~~ 176 (177)
++++|.+.+.+.
T Consensus 177 l~~~l~~~i~~~ 188 (190)
T 2h57_A 177 GVDWLQDQIQTV 188 (190)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHHHHHh
Confidence 999999988654
No 14
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=100.00 E-value=5.1e-34 Score=195.03 Aligned_cols=162 Identities=32% Similarity=0.527 Sum_probs=135.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
.+.++|+++|++|||||||++++.++.+. .+.+|.+.....+..+++.+.+|||||++.++..+..+++.+|++++|+|
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 99 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD 99 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEE
Confidence 45689999999999999999999987765 45677777777888889999999999999998888889999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCccc-------ccCCceeEEEeeecCCCCh
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES-------ITDREVCCYMISCKDSINI 162 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~Sa~~~~~i 162 (177)
++++.+++....|+..+.......+.|+++|+||+|+.+....++..+.++... .....++++++||++|.|+
T Consensus 100 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 179 (190)
T 1m2o_B 100 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGY 179 (190)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSH
T ss_pred CCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCH
Confidence 999999999999999887654446799999999999987656666766665432 1234578999999999999
Q ss_pred HHHHHHHHHH
Q 030429 163 DAVIDWLIKH 172 (177)
Q Consensus 163 ~~l~~~l~~~ 172 (177)
+++|++|.+.
T Consensus 180 ~~l~~~l~~~ 189 (190)
T 1m2o_B 180 LEAFQWLSQY 189 (190)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhh
Confidence 9999999865
No 15
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=100.00 E-value=4.2e-34 Score=196.64 Aligned_cols=163 Identities=29% Similarity=0.565 Sum_probs=129.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
.+.++|+++|++|||||||++++.++.+. .+.+|.+.....+..+++.+.+|||||++.++..+..+++++|++++|+|
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D 101 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVD 101 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEE
Confidence 45689999999999999999999977664 45567777777788888999999999999998888889999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCccc---------c---cCCceeEEEeeec
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES---------I---TDREVCCYMISCK 157 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~---------~---~~~~~~~~~~Sa~ 157 (177)
++++.++.....|+..+.......+.|+++|+||+|+.+....++..+.++... . ....+++++|||+
T Consensus 102 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 181 (198)
T 1f6b_A 102 CADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVL 181 (198)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTT
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEECC
Confidence 999999999999999887654446799999999999987555666666654321 1 1245789999999
Q ss_pred CCCChHHHHHHHHHHh
Q 030429 158 DSINIDAVIDWLIKHS 173 (177)
Q Consensus 158 ~~~~i~~l~~~l~~~~ 173 (177)
+|.|++++|++|.+.+
T Consensus 182 ~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 182 KRQGYGEGFRWMAQYI 197 (198)
T ss_dssp TTBSHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHhc
Confidence 9999999999998764
No 16
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=100.00 E-value=8.4e-34 Score=208.67 Aligned_cols=169 Identities=33% Similarity=0.623 Sum_probs=143.4
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
..++.+||+++|.+|||||||+++|.++.+... .+|.+.....+...++.+.+|||||++.+...+..+++.+|++++|
T Consensus 161 ~~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV 239 (329)
T 3o47_A 161 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 239 (329)
T ss_dssp --CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEE
T ss_pred cccCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 345678999999999999999999998776544 3688888888889999999999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
+|++++.++.....++..+.......++|+++|+||+|+.+....+++.+.++........++++++||++|.|++++|+
T Consensus 240 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~ 319 (329)
T 3o47_A 240 VDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLD 319 (329)
T ss_dssp EETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHH
T ss_pred EECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHH
Confidence 99999999999999999987775556899999999999998877888888888766666788999999999999999999
Q ss_pred HHHHHhhhcC
Q 030429 168 WLIKHSKTAK 177 (177)
Q Consensus 168 ~l~~~~~~~~ 177 (177)
+|.+.+.+++
T Consensus 320 ~l~~~l~~~k 329 (329)
T 3o47_A 320 WLSNQLRNQK 329 (329)
T ss_dssp HHHHHHTC--
T ss_pred HHHHHHHhcC
Confidence 9999987654
No 17
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=4.1e-33 Score=189.60 Aligned_cols=160 Identities=18% Similarity=0.277 Sum_probs=125.6
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
...+.+||+++|++|||||||+++++++.+...+.++.+.....+..++ +.+.+|||+|++.+. ++..+|+++
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i 90 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV 90 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEE
Confidence 4467899999999999999999999999888777777554444555555 678889999998877 567799999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc----cCHHHHHHHhCcccccCCceeEEEeeecCCCC
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA----LSKQALVDQLGLESITDREVCCYMISCKDSIN 161 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 161 (177)
+|||++++.+++.+..|+..+.......+.|+++|+||+|+.+. ...++..+.... ....+++++||++|.|
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~----~~~~~~~e~Sa~~~~g 166 (184)
T 3ihw_A 91 FVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTD----LKRCTYYETCATYGLN 166 (184)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHH----TTTCEEEEEBTTTTBT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHH----cCCCeEEEecCCCCCC
Confidence 99999999999999999998877654467899999999998521 122222222111 1124799999999999
Q ss_pred hHHHHHHHHHHhhhc
Q 030429 162 IDAVIDWLIKHSKTA 176 (177)
Q Consensus 162 i~~l~~~l~~~~~~~ 176 (177)
++++|++|.+.+.++
T Consensus 167 v~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 167 VERVFQDVAQKVVAL 181 (184)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987754
No 18
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=4.7e-33 Score=185.90 Aligned_cols=160 Identities=15% Similarity=0.138 Sum_probs=105.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-E--EEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-K--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
.+||+++|++|||||||++++.+...... .++.+.... . +....+.+.+||+||++.+...+..++..+|++++|+
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 57999999999999999999986554322 222222221 2 3334578899999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
|++++.+++....|+..+.......+.|+++|+||+|+.+... .++..+... ..+++++++||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~ 155 (166)
T 3q72_A 81 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV-----VFDCKFIETSAALHHNVQALF 155 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHH-----HTTCEEEECBGGGTBSHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHH-----HhCCcEEEeccCCCCCHHHHH
Confidence 9999999999999999988766557899999999999975432 222211111 122479999999999999999
Q ss_pred HHHHHHhhhcC
Q 030429 167 DWLIKHSKTAK 177 (177)
Q Consensus 167 ~~l~~~~~~~~ 177 (177)
++|.+.+.++|
T Consensus 156 ~~l~~~~~~~r 166 (166)
T 3q72_A 156 EGVVRQIRLRR 166 (166)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99999988765
No 19
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.8e-33 Score=188.33 Aligned_cols=159 Identities=26% Similarity=0.374 Sum_probs=126.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
..+||+++|++|||||||++++.++.+.....++.+.... .+..+ .+.+.+||+||+..+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 3589999999999999999999988887777777764443 33343 4689999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc---C--HHHHHHHhCcccccCCceeEEEeeecCCCC
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL---S--KQALVDQLGLESITDREVCCYMISCKDSIN 161 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 161 (177)
|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. . .++..+... ..+++++++||++|.|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~g 155 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAE-----EKGLLFFETSAKTGEN 155 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHH-----HHTCEEEECCTTTCTT
T ss_pred EEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCC
Confidence 999999999999988888876543 2578999999999987542 1 112111111 1124799999999999
Q ss_pred hHHHHHHHHHHhhh
Q 030429 162 IDAVIDWLIKHSKT 175 (177)
Q Consensus 162 i~~l~~~l~~~~~~ 175 (177)
++++|++|.+.+.+
T Consensus 156 i~~l~~~l~~~i~~ 169 (170)
T 1ek0_A 156 VNDVFLGIGEKIPL 169 (170)
T ss_dssp HHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987754
No 20
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1e-32 Score=190.05 Aligned_cols=164 Identities=20% Similarity=0.279 Sum_probs=127.1
Q ss_pred ecccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EEeCCEEEEEEecCCchhhHHhHHHHhcCC
Q 030429 5 ISLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGV 81 (177)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 81 (177)
..+...+.+||+++|.+|||||||+++|.++.+...+.++.+..... .....+.+.+|||||++.+...+..++..+
T Consensus 17 q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 96 (201)
T 3oes_A 17 QGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGV 96 (201)
T ss_dssp ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTC
T ss_pred CCCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcC
Confidence 34556788999999999999999999999998887777777754432 334568899999999999988888999999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH--H---HHHHHhCcccccCCceeEEEeee
Q 030429 82 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK--Q---ALVDQLGLESITDREVCCYMISC 156 (177)
Q Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~Sa 156 (177)
|++++|+|++++.+++.+..|+..+.......++|+++|+||+|+.+.... . ++.+.. +++++++||
T Consensus 97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~--------~~~~~~~Sa 168 (201)
T 3oes_A 97 HGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESW--------GATFMESSA 168 (201)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHH--------TCEEEECCT
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHh--------CCeEEEEeC
Confidence 999999999999999999999999877766567999999999998754321 2 222222 237999999
Q ss_pred cCCCChHHHHHHHHHHhhhc
Q 030429 157 KDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 157 ~~~~~i~~l~~~l~~~~~~~ 176 (177)
++|.|++++|++|.+.+.+.
T Consensus 169 ~~~~~v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 169 RENQLTQGIFTKVIQEIARV 188 (201)
T ss_dssp TCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999987654
No 21
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=100.00 E-value=6.8e-32 Score=208.61 Aligned_cols=167 Identities=33% Similarity=0.622 Sum_probs=146.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
..+.+||+++|.+|+|||||+++|.++.+. ...+|.+.....+..+++.+.+|||||++.+...+..+++.+|++++|+
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~ 397 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV 397 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEE
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 356799999999999999999999988754 4557888898889999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDW 168 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 168 (177)
|++++.++.....|+..+.......++|+++|+||+|+.+....+++.+.++........++++++||++|.|++++|++
T Consensus 398 D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 477 (497)
T 3lvq_E 398 DCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTW 477 (497)
T ss_dssp ETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHH
T ss_pred ECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHH
Confidence 99999999999999999877655567999999999999887777788888776666667788999999999999999999
Q ss_pred HHHHhhhc
Q 030429 169 LIKHSKTA 176 (177)
Q Consensus 169 l~~~~~~~ 176 (177)
|.+.+.+.
T Consensus 478 l~~~~~~~ 485 (497)
T 3lvq_E 478 LTSNYKSK 485 (497)
T ss_dssp HHHHCC--
T ss_pred HHHHHHhc
Confidence 99987654
No 22
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=7.9e-32 Score=185.65 Aligned_cols=163 Identities=27% Similarity=0.385 Sum_probs=123.3
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcccee--EEEEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN--MRKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSA 83 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (177)
..++.+||+++|++|||||||++++.++.+...+.+|.+.. ...+..++ +.+.+||+||++++...+..+++.+|+
T Consensus 25 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (201)
T 2hup_A 25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANG 104 (201)
T ss_dssp -CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCE
Confidence 34567999999999999999999999888877777776643 34455554 789999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCce-eEEEeeecCCC
Q 030429 84 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREV-CCYMISCKDSI 160 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 160 (177)
+++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.. ..++..+.... .++ +++++||++|.
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~~~SA~~g~ 178 (201)
T 2hup_A 105 AILAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAEH-----YDILCAIETSAKDSS 178 (201)
T ss_dssp EEEEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----TTCSEEEECBTTTTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHHH-----cCCCEEEEEeCCCCC
Confidence 999999999999999888888876543 2578999999999997632 22333222211 123 79999999999
Q ss_pred ChHHHHHHHHHHhhhc
Q 030429 161 NIDAVIDWLIKHSKTA 176 (177)
Q Consensus 161 ~i~~l~~~l~~~~~~~ 176 (177)
|++++|++|.+.+.++
T Consensus 179 gi~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 179 NVEEAFLRVATELIMR 194 (201)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999987653
No 23
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=9.7e-32 Score=183.63 Aligned_cols=162 Identities=22% Similarity=0.380 Sum_probs=131.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE---EEEeC-----------CEEEEEEecCCchhhHHhH
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKG-----------NVTIKLWDLGGQRRFRTMW 74 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~---~~~~~-----------~~~~~~~D~~g~~~~~~~~ 74 (177)
.+..+||+++|++|||||||++++.++.+.....++.+.... .+..+ .+.+.+||+||++.+...+
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 456799999999999999999999998888777788776654 33333 4789999999999999999
Q ss_pred HHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEE
Q 030429 75 ERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCY 152 (177)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 152 (177)
..+++.+|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+... .++..+.... .+++++
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~ 162 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEK-----YGIPYF 162 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHH-----HTCCEE
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH-----cCCCEE
Confidence 999999999999999999999999888888887655446799999999999976322 2222222111 123799
Q ss_pred EeeecCCCChHHHHHHHHHHhhh
Q 030429 153 MISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 153 ~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
++||++|.|+++++++|.+.+.+
T Consensus 163 ~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 163 ETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 24
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=1.5e-32 Score=187.04 Aligned_cols=162 Identities=18% Similarity=0.288 Sum_probs=126.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
++.+||+++|++|||||||++++.++.+...+.++...... .+..++ +.+.+||+||++.+...+..++..+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 56799999999999999999999988877776666653333 233443 568889999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
|+|++++.++.....|+..+.......+.|+++|+||+|+.+.....+..+.+... .+++++++||++|.|++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~g~gi~~l~ 157 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARS----YGIPFIETSAKTRQGVDDAF 157 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHH----HTCCEEECCTTTCTTHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHH----cCCeEEEEeCCCCCCHHHHH
Confidence 99999999999999998888776555689999999999997543222222222111 12379999999999999999
Q ss_pred HHHHHHhhh
Q 030429 167 DWLIKHSKT 175 (177)
Q Consensus 167 ~~l~~~~~~ 175 (177)
++|.+.+.+
T Consensus 158 ~~l~~~~~~ 166 (189)
T 4dsu_A 158 YTLVREIRK 166 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 25
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=2.2e-32 Score=185.17 Aligned_cols=163 Identities=18% Similarity=0.247 Sum_probs=129.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-EEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
..+.+||+++|++|||||||++++.++.+...+.++.+..... +..++ +.+.+||+||++.+...+..+++.+|+++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 4568999999999999999999999888887777777755432 34444 78899999999999888888999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
+|+|++++++++.+..|+..+.......+.|+++|+||+|+.+... .++..+.... .+++++++||++|.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~ 157 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAES-----WNAAFLESSAKENQTAV 157 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHH-----TTCEEEECCTTSHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHH-----hCCcEEEEecCCCCCHH
Confidence 9999999999999999998887766556799999999999865322 2222222211 13379999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030429 164 AVIDWLIKHSKTA 176 (177)
Q Consensus 164 ~l~~~l~~~~~~~ 176 (177)
++|++|.+.+.+.
T Consensus 158 ~l~~~l~~~~~~~ 170 (181)
T 3t5g_A 158 DVFRRIILEAEKM 170 (181)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988754
No 26
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=4.2e-32 Score=181.27 Aligned_cols=160 Identities=22% Similarity=0.306 Sum_probs=126.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-EEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
+.+||+++|++|||||||++++.++.+...+.++.+..... +..+ .+.+.+||+||+.++...+..++..+|++++|
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 46899999999999999999999888877776766644432 3333 36899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|++++.+++....|+..+.......+.|+++|+||+|+.+... .++..+.... .+++++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l 157 (168)
T 1u8z_A 83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQ-----WNVNYVETSAKTRANVDKV 157 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHH-----HTCEEEECCTTTCTTHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHH-----cCCeEEEeCCCCCCCHHHH
Confidence 99999999999988888887655545799999999999976422 2333322211 1237999999999999999
Q ss_pred HHHHHHHhhh
Q 030429 166 IDWLIKHSKT 175 (177)
Q Consensus 166 ~~~l~~~~~~ 175 (177)
|++|.+.+.+
T Consensus 158 ~~~l~~~i~~ 167 (168)
T 1u8z_A 158 FFDLMREIRA 167 (168)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998865
No 27
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=1e-31 Score=179.78 Aligned_cols=160 Identities=26% Similarity=0.370 Sum_probs=128.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
.+.+||+++|++|||||||++++.++.+.....++.+.... .+.. ..+.+.+||+||++++...+..++..+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 46799999999999999999999988887777777665443 3333 3578999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
+|+|++++.+++....|+..+..... +..|+++|+||+|+.+... .++..+... ...++++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi~ 157 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKADLANKRAVDFQEAQSYAD-----DNSLLFMETSAKTSMNVN 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECccCccccccCHHHHHHHHH-----HcCCeEEEEeCCCCCCHH
Confidence 99999999999999888888765432 5789999999999865322 223222211 123479999999999999
Q ss_pred HHHHHHHHHhhh
Q 030429 164 AVIDWLIKHSKT 175 (177)
Q Consensus 164 ~l~~~l~~~~~~ 175 (177)
+++++|.+.+.+
T Consensus 158 ~l~~~i~~~~~~ 169 (170)
T 1r2q_A 158 EIFMAIAKKLPK 169 (170)
T ss_dssp HHHHHHHHTSCC
T ss_pred HHHHHHHHHHhh
Confidence 999999987754
No 28
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=2.7e-32 Score=182.22 Aligned_cols=160 Identities=19% Similarity=0.290 Sum_probs=127.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-EE--eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
+.+||+++|++|||||||++++.++.+...+.++.+..... +. ...+.+.+||+||+.++...+..++..+|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999988877777776644432 22 3457899999999999999889999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|++++.+++....|+..+.......+.|+++|+||+|+.+... .++..+.... ....+++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l 157 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ----WCNCAFLESSAKSKINVNEI 157 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH----TTSCEEEECBTTTTBSHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHH----ccCCcEEEecCCCCCCHHHH
Confidence 99999998998888887776644446799999999999976432 2222222111 12457999999999999999
Q ss_pred HHHHHHHhh
Q 030429 166 IDWLIKHSK 174 (177)
Q Consensus 166 ~~~l~~~~~ 174 (177)
+++|.+.+.
T Consensus 158 ~~~l~~~i~ 166 (167)
T 1c1y_A 158 FYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998774
No 29
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=3.1e-32 Score=184.80 Aligned_cols=163 Identities=20% Similarity=0.251 Sum_probs=129.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-EEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
..+.+||+++|++|||||||++++.++.+...+.++.+..... ...++ +.+.+||+||++.+...+..+++.+|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 94 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 94 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 4567999999999999999999999888887777777644432 33343 56778999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeec-CCCCh
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCK-DSINI 162 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i 162 (177)
+|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+.. ..++..+..... +++++++||+ ++.|+
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~-----~~~~~~~Sa~~~~~~v 169 (183)
T 3kkq_A 95 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKY-----NIPYIETSAKDPPLNV 169 (183)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHH-----TCCEEEEBCSSSCBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHh-----CCeEEEeccCCCCCCH
Confidence 999999999999999998888665444678999999999987532 222222221111 2479999999 99999
Q ss_pred HHHHHHHHHHhhhc
Q 030429 163 DAVIDWLIKHSKTA 176 (177)
Q Consensus 163 ~~l~~~l~~~~~~~ 176 (177)
+++|++|.+.+.++
T Consensus 170 ~~l~~~l~~~i~~q 183 (183)
T 3kkq_A 170 DKTFHDLVRVIRQQ 183 (183)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999988753
No 30
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.9e-32 Score=184.96 Aligned_cols=164 Identities=22% Similarity=0.368 Sum_probs=131.4
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEe--CCEEEEEEecCCchhhHHhHHHHhcCCCE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSA 83 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (177)
...+.++|+++|++|||||||++++.+..+.....++.+.... .+.. ..+.+.+|||||++.+...+..+++.+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 90 (195)
T 1x3s_A 11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG 90 (195)
T ss_dssp TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 3456799999999999999999999998888777777665443 3333 34789999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC-HHHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 84 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
+++|+|++++.++..+..|+..+.........|+++|+||+|+.+... .++..+.... ..++++++||+++.|+
T Consensus 91 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi 165 (195)
T 1x3s_A 91 VILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARK-----HSMLFIEASAKTCDGV 165 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHH-----TTCEEEECCTTTCTTH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHH-----cCCEEEEecCCCCCCH
Confidence 999999999999999998888887665556789999999999965322 2222222211 2347999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030429 163 DAVIDWLIKHSKTA 176 (177)
Q Consensus 163 ~~l~~~l~~~~~~~ 176 (177)
+++|++|.+.+.+.
T Consensus 166 ~~l~~~l~~~~~~~ 179 (195)
T 1x3s_A 166 QCAFEELVEKIIQT 179 (195)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987653
No 31
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=1.5e-31 Score=180.29 Aligned_cols=164 Identities=24% Similarity=0.402 Sum_probs=126.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
....++|+++|++|||||||++++.++.+.....++.+.... .+..++ +.+.+||+||++.+...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 346799999999999999999999988887777777775543 344444 6899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCC---CCCCCcEEEEeeCCCccccc-CHHHHHHHhCcccccCCceeEEEeeecCCC
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKP---SLSGIPLLVLGNKIDKSEAL-SKQALVDQLGLESITDREVCCYMISCKDSI 160 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~iiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (177)
++|+|++++.++.....|+..+.... ...+.|+++|+||+|+.+.. ..++..+... .....+++++||++|.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~ 159 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR----DNGDYPYFETSAKDAT 159 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH----HTTCCCEEECCTTTCT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHH----hcCCceEEEEeCCCCC
Confidence 99999999988888888877765432 22568999999999997432 2233322221 0234579999999999
Q ss_pred ChHHHHHHHHHHhhhc
Q 030429 161 NIDAVIDWLIKHSKTA 176 (177)
Q Consensus 161 ~i~~l~~~l~~~~~~~ 176 (177)
|++++|++|.+.+.+.
T Consensus 160 gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 160 NVAAAFEEAVRRVLAT 175 (177)
T ss_dssp THHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999988654
No 32
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.7e-31 Score=181.67 Aligned_cols=162 Identities=23% Similarity=0.351 Sum_probs=129.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EE--eCCEEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
..+.+||+++|++|||||||+++++++.+.....++.+..... +. ...+.+.+||+||++++...+..++..+|++
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 99 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAA 99 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence 3567999999999999999999999988877777777755443 22 3468899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ..++..+... ..+++++++||++|.|+
T Consensus 100 ilV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi 173 (192)
T 2fg5_A 100 VIVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYAE-----SIGAIVVETSAKNAINI 173 (192)
T ss_dssp EEEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----TTTCEEEECBTTTTBSH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEeCCCCcCH
Confidence 99999999999999988888775543 3478999999999997532 2333333221 12357999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030429 163 DAVIDWLIKHSKTA 176 (177)
Q Consensus 163 ~~l~~~l~~~~~~~ 176 (177)
++++++|.+.+.+.
T Consensus 174 ~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 174 EELFQGISRQIPPL 187 (192)
T ss_dssp HHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987643
No 33
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=2.5e-31 Score=182.03 Aligned_cols=159 Identities=27% Similarity=0.448 Sum_probs=129.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
.+..+||+++|++|||||||++++.++.+.....++.+.... .+..++ +.+.+||+||++.+...+..+++.+|++
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 92 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 92 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence 456799999999999999999999998888777777664443 445555 7899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH--H---HHHHHhCcccccCCceeEEEeeecCC
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK--Q---ALVDQLGLESITDREVCCYMISCKDS 159 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~Sa~~~ 159 (177)
++|+|++++.+++....|+..+..... .+.|+++|+||+|+.+.... + ++.+.+ +++++++||++|
T Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~g 163 (196)
T 3tkl_A 93 IVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL--------GIPFLETSAKNA 163 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT--------TCCEEEECTTTC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECcccccccccCHHHHHHHHHHc--------CCcEEEEeCCCC
Confidence 999999999999999888877755432 57899999999999754322 2 222222 237999999999
Q ss_pred CChHHHHHHHHHHhhhc
Q 030429 160 INIDAVIDWLIKHSKTA 176 (177)
Q Consensus 160 ~~i~~l~~~l~~~~~~~ 176 (177)
.|++++|++|.+.+.++
T Consensus 164 ~gv~~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 164 TNVEQSFMTMAAEIKKR 180 (196)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999987653
No 34
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.3e-32 Score=188.35 Aligned_cols=161 Identities=24% Similarity=0.354 Sum_probs=128.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
.++.+||+++|++|||||||+++++++.+.....+|.+.... .+..++ +.+.+|||||++++...+..+++.+|++
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 102 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL 102 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence 456799999999999999999999998888777777775543 344444 6899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+... .++..+... ..+++++++||++|.|+
T Consensus 103 i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~g~gv 176 (201)
T 2ew1_A 103 ILTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFSE-----AQDMYYLETSAKESDNV 176 (201)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCCEEECCTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCH
Confidence 99999999999988888888775532 25689999999999975322 222222111 11247999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030429 163 DAVIDWLIKHSKT 175 (177)
Q Consensus 163 ~~l~~~l~~~~~~ 175 (177)
+++|++|.+.+.+
T Consensus 177 ~~l~~~l~~~i~~ 189 (201)
T 2ew1_A 177 EKLFLDLACRLIS 189 (201)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987754
No 35
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=8.1e-32 Score=179.71 Aligned_cols=160 Identities=16% Similarity=0.272 Sum_probs=127.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM-RKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
+.+||+++|++|||||||++++.++.+...+.++.+... ..+..++ +.+.+||+||++.+...+..++..+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 468999999999999999999998887776666655332 3334443 5699999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|++++.+++....|+..+.......+.|+++|+||+|+.+... .++..+.... .+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l 156 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEE-----WGCPFMETSAKSKTMVDEL 156 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH-----HTSCEEEECTTCHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHH-----hCCCEEEecCCCCcCHHHH
Confidence 99999999999999988887765556799999999999865432 2222221111 1237999999999999999
Q ss_pred HHHHHHHhhh
Q 030429 166 IDWLIKHSKT 175 (177)
Q Consensus 166 ~~~l~~~~~~ 175 (177)
+++|.+.+.+
T Consensus 157 ~~~l~~~~~~ 166 (167)
T 1kao_A 157 FAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999998765
No 36
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.98 E-value=1.6e-32 Score=185.52 Aligned_cols=164 Identities=21% Similarity=0.329 Sum_probs=131.3
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-EEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
...+.++|+++|.+|||||||++++.++.+...+.++.+..... +..++ +.+.+||+||++++...+..++..+|++
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 34567999999999999999999999988887777777755443 44443 6889999999999998889999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
++|+|++++.++.....|+..+.......+.|+++|+||+|+.+... .++..+ +.. ..+++++++||++|.|+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~~~----~~~~~~~~~Sa~~~~gv 159 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASA-FGA----SHHVAYFEASAKLRLNV 159 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHH-HHH----HTTCEEEECBTTTTBSH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH-HHH----HcCCeEEEecCCCCCCH
Confidence 99999999999999999888886554446789999999999976432 222222 111 12347999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030429 163 DAVIDWLIKHSKTA 176 (177)
Q Consensus 163 ~~l~~~l~~~~~~~ 176 (177)
++++++|.+.+.+.
T Consensus 160 ~~l~~~l~~~~~~~ 173 (181)
T 2fn4_A 160 DEAFEQLVRAVRKY 173 (181)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987653
No 37
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.98 E-value=5.2e-32 Score=180.99 Aligned_cols=159 Identities=23% Similarity=0.415 Sum_probs=126.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
++.+||+++|++|||||||++++.++.+...+.++.+.... .+..+ .+.+.+||+||+..+...+..++..+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999998887777777664443 34433 468999999999999888889999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
+|+|++++.+++....|+..+.... .+.|+++|+||+|+.+... .++..+.... .+.+++++||++|.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~ 155 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAKR-----LKLRFYRTSVKEDLNVS 155 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHHH-----HTCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHHH-----cCCeEEEEecCCCCCHH
Confidence 9999999988888888887775543 4789999999999876322 2222222111 12379999999999999
Q ss_pred HHHHHHHHHhhh
Q 030429 164 AVIDWLIKHSKT 175 (177)
Q Consensus 164 ~l~~~l~~~~~~ 175 (177)
+++++|.+.+.+
T Consensus 156 ~l~~~l~~~~~~ 167 (168)
T 1z2a_A 156 EVFKYLAEKHLQ 167 (168)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
No 38
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.98 E-value=8.4e-32 Score=181.74 Aligned_cols=162 Identities=21% Similarity=0.313 Sum_probs=125.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccc--eeEEEEEeCC---EEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGN---VTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~---~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
.+.+||+++|++|||||||++++.++.+...+.+|.+ .....+..++ +.+.+||+||++.+...+..+++.+|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 4679999999999999999999998877666556665 3344455554 8999999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCC-CCCCc-EEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCC
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPS-LSGIP-LLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSI 160 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (177)
++|+|++++.+++.+..|+..+..... ....| +++|+||+|+.+... .++..+.... .+++++++||++|.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~ 158 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQE-----NGFSSHFVSAKTGD 158 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHH-----HTCEEEEECTTTCT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHH-----cCCcEEEEeCCCCC
Confidence 999999999889888888777654211 01344 899999999975322 2222221111 12479999999999
Q ss_pred ChHHHHHHHHHHhhhc
Q 030429 161 NIDAVIDWLIKHSKTA 176 (177)
Q Consensus 161 ~i~~l~~~l~~~~~~~ 176 (177)
|++++|++|.+.+.+.
T Consensus 159 gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 159 SVFLCFQKVAAEILGI 174 (178)
T ss_dssp THHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999988654
No 39
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.98 E-value=3.3e-31 Score=181.24 Aligned_cols=164 Identities=24% Similarity=0.363 Sum_probs=129.9
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEe--CCEEEEEEecCCchhhHHhHHHHhcCC
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTK--GNVTIKLWDLGGQRRFRTMWERYCRGV 81 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~ 81 (177)
.....+.+||+++|.+|||||||+++|.+..+.....++.+..... +.. ..+.+.+||+||+.++...+..++..+
T Consensus 19 ~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 98 (193)
T 2oil_A 19 SEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGA 98 (193)
T ss_dssp -CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccC
Confidence 3445677999999999999999999999988877777776654433 333 457899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCC
Q 030429 82 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDS 159 (177)
Q Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 159 (177)
|++++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+... .++..+... ..+++++++||++|
T Consensus 99 d~vi~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 172 (193)
T 2oil_A 99 VGALLVFDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMFAE-----NNGLLFLETSALDS 172 (193)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEEECTTTC
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHHHH-----HcCCEEEEEeCCCC
Confidence 99999999999988888888888876543 35789999999999976422 222222211 12347999999999
Q ss_pred CChHHHHHHHHHHhhh
Q 030429 160 INIDAVIDWLIKHSKT 175 (177)
Q Consensus 160 ~~i~~l~~~l~~~~~~ 175 (177)
.|++++|++|.+.+.+
T Consensus 173 ~gi~~l~~~l~~~i~~ 188 (193)
T 2oil_A 173 TNVELAFETVLKEIFA 188 (193)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988764
No 40
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.98 E-value=6.2e-33 Score=185.83 Aligned_cols=161 Identities=17% Similarity=0.169 Sum_probs=114.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCc--cceeEEEEEeC--CEEEEEEecCCchhhHH-hHHHHhcCCCEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPT--VGFNMRKVTKG--NVTIKLWDLGGQRRFRT-MWERYCRGVSAILY 86 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t--~~~~~~~~~~~--~~~~~~~D~~g~~~~~~-~~~~~~~~~d~~i~ 86 (177)
.+||+++|++|||||||++++.+........++ .......+..+ .+.+.+||+||+.++.. ....+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 579999999999999999999866554443332 33333334444 47888999999988876 55566888999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
|+|++++++++....|+..+.......+.|+++|+||+|+.+... .++..+... ..+++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~ 156 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAG-----TLSCKHIETSAALHHNTRE 156 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECBTTTTBSHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHH-----HcCCcEEEecCccCCCHHH
Confidence 999999999999999999887765555799999999999875322 222222111 1134799999999999999
Q ss_pred HHHHHHHHhhhcC
Q 030429 165 VIDWLIKHSKTAK 177 (177)
Q Consensus 165 l~~~l~~~~~~~~ 177 (177)
+|+++.+.+..+|
T Consensus 157 l~~~l~~~i~~~r 169 (169)
T 3q85_A 157 LFEGAVRQIRLRR 169 (169)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999988765
No 41
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.98 E-value=1.5e-31 Score=184.52 Aligned_cols=163 Identities=21% Similarity=0.278 Sum_probs=130.9
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM-RKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
...+.++|+++|++|||||||++++.++.+...+.++.+... ..+..++ +.+.+||+||+..+...+..++..+|++
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 89 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 89 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence 345679999999999999999999998888777777766443 2344444 6899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
++|+|++++.++.....|+..+.......+.|+++|+||+|+.+... .++..+.... .+.+++++||++|.|+
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~g~gi 164 (206)
T 2bov_A 90 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ-----WNVNYVETSAKTRANV 164 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH-----HTCEEEEECTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHH-----hCCeEEEEeCCCCCCH
Confidence 99999999999999999988887765556799999999999976422 2333322211 1237999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030429 163 DAVIDWLIKHSKT 175 (177)
Q Consensus 163 ~~l~~~l~~~~~~ 175 (177)
+++|++|.+.+.+
T Consensus 165 ~~l~~~l~~~i~~ 177 (206)
T 2bov_A 165 DKVFFDLMREIRA 177 (206)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 42
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.98 E-value=1e-31 Score=182.45 Aligned_cols=162 Identities=22% Similarity=0.298 Sum_probs=130.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-EEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
...+||+++|++|||||||++++.++.+...+.++.+..... +..++ +.+.+||+||+.++...+..++..+|++++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 95 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEE
Confidence 457999999999999999999999888877777766654432 34443 689999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
|+|++++.++.....|+..+.......+.|+++|+||+|+.+.. ..++..+.... .+++++++||+++.|+++
T Consensus 96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~ 170 (187)
T 2a9k_A 96 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ-----WNVNYVETSAKTRANVDK 170 (187)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHH-----TTCEEEECCTTTCTTHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHH-----cCCeEEEeCCCCCCCHHH
Confidence 99999999999998888888766554579999999999997632 22333332211 234799999999999999
Q ss_pred HHHHHHHHhhhc
Q 030429 165 VIDWLIKHSKTA 176 (177)
Q Consensus 165 l~~~l~~~~~~~ 176 (177)
+|++|.+.+.++
T Consensus 171 l~~~l~~~i~~~ 182 (187)
T 2a9k_A 171 VFFDLMREIRAR 182 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999987654
No 43
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.98 E-value=2.1e-32 Score=187.37 Aligned_cols=162 Identities=18% Similarity=0.216 Sum_probs=125.0
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-EEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
..++.+||+++|.+|||||||++++.++.+...+.+|.+..... +.. ..+.+.+|||||++.+...+..+++++|++
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 98 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV 98 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence 34567999999999999999999999998887777877755544 233 346779999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCcccc----cCHHHHHHHhCcccccCCcee-EEEeeecC
Q 030429 85 LYVVDAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEA----LSKQALVDQLGLESITDREVC-CYMISCKD 158 (177)
Q Consensus 85 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~ 158 (177)
++|+|++++.++..+ ..|+..+... ..+.|+++|+||+|+.+. ...++..+..... ++. ++++||++
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~ 171 (194)
T 3reg_A 99 LLCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKL-----GCVAYIEASSVA 171 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHH-----TCSCEEECBTTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhc-----CCCEEEEeecCC
Confidence 999999999999987 4555544332 246899999999999753 1222222221111 123 99999999
Q ss_pred CCChHHHHHHHHHHhhhc
Q 030429 159 SINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 159 ~~~i~~l~~~l~~~~~~~ 176 (177)
|.|++++|++|.+.+.++
T Consensus 172 ~~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 172 KIGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp TBSHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 999999999999988654
No 44
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.98 E-value=4.6e-32 Score=184.98 Aligned_cols=163 Identities=26% Similarity=0.410 Sum_probs=125.2
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEeCC--EEEEEEecCCchhhH-HhHHHHhcCCC
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQRRFR-TMWERYCRGVS 82 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~-~~~~~~~~~~d 82 (177)
...+.+||+++|.+|||||||+++++++.+.....++.+... ..+..++ +.+.+||+||++++. ..+..+++.+|
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 345679999999999999999999998888777777666443 3344444 789999999999998 78888999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCC-
Q 030429 83 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDS- 159 (177)
Q Consensus 83 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~- 159 (177)
++++|+|++++.++..+..|+..+.......+.|+++|+||+|+.+... .++..+ +.. ..+++++++||+++
T Consensus 96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~~~----~~~~~~~~~Sa~~~~ 170 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQK-FAD----THSMPLFETSAKNPN 170 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHH-HHH----HTTCCEEECCSSSGG
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHH-HHH----HcCCEEEEEeCCcCC
Confidence 9999999999999999998988887765456799999999999975422 222221 111 12247999999999
Q ss_pred --CChHHHHHHHHHHhhh
Q 030429 160 --INIDAVIDWLIKHSKT 175 (177)
Q Consensus 160 --~~i~~l~~~l~~~~~~ 175 (177)
.|++++|++|.+.+.+
T Consensus 171 ~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 171 DNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp GGSCHHHHHHHHC-----
T ss_pred cccCHHHHHHHHHHHHhh
Confidence 9999999999887754
No 45
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.98 E-value=1.7e-31 Score=180.21 Aligned_cols=162 Identities=21% Similarity=0.328 Sum_probs=127.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
+.+.+||+++|++|||||||+++++++.+.....++.+.... .+..++ +.+.+|||||++.+...+..++..+|++
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 90 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 90 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 346699999999999999999999988888777777764443 344444 6899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+... .++..+.... .+.+++++||++|.|+
T Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i 164 (179)
T 2y8e_A 91 VVVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE-----LNVMFIETSAKAGYNV 164 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHHHH-----HTCEEEEEBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHHHH-----cCCeEEEEeCCCCCCH
Confidence 99999999988988888888775532 24689999999999975432 2222222211 1247999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030429 163 DAVIDWLIKHSKTA 176 (177)
Q Consensus 163 ~~l~~~l~~~~~~~ 176 (177)
++++++|.+.+.+.
T Consensus 165 ~~l~~~l~~~~~~~ 178 (179)
T 2y8e_A 165 KQLFRRVAAALPGM 178 (179)
T ss_dssp HHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999987654
No 46
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.98 E-value=1.4e-31 Score=186.33 Aligned_cols=162 Identities=20% Similarity=0.368 Sum_probs=127.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEeC------------CEEEEEEecCCchhhHHhH
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKG------------NVTIKLWDLGGQRRFRTMW 74 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~------------~~~~~~~D~~g~~~~~~~~ 74 (177)
.++.+||+++|++|||||||+++|+++.+...+.++.+..... +..+ .+.+.+|||||++++...+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 101 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT 101 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence 4567999999999999999999999888776666666544332 2222 5789999999999999999
Q ss_pred HHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEE
Q 030429 75 ERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCY 152 (177)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 152 (177)
..++..+|++++|+|++++.++..+..|+..+.......+.|+++|+||+|+.+... .++..+.... .+++++
T Consensus 102 ~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~ 176 (217)
T 2f7s_A 102 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADK-----YGIPYF 176 (217)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----TTCCEE
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHH-----CCCcEE
Confidence 999999999999999999999999888887775554446789999999999976422 2222222111 124799
Q ss_pred EeeecCCCChHHHHHHHHHHhhh
Q 030429 153 MISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 153 ~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
++||+++.|++++|++|.+.+.+
T Consensus 177 ~~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 177 ETSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp EEBTTTTBTHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988754
No 47
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.98 E-value=6.2e-31 Score=178.70 Aligned_cols=161 Identities=22% Similarity=0.352 Sum_probs=128.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
.++.+||+++|++|||||||++++.++.+.....++.+... ..+..++ +.+.+||+||++.+...+..++..+|++
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 86 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA 86 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence 46679999999999999999999998888777777766443 3344444 7899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
++|+|++++.++.....|+..+..... .+.|+++|+||+|+.+... .++..+... ...++++++||++|.|+
T Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi 160 (186)
T 2bme_A 87 LLVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKDLDADREVTFLEASRFAQ-----ENELMFLETSALTGENV 160 (186)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEecCCCCCCH
Confidence 999999999999988888877654322 5789999999999965322 222222211 12347999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030429 163 DAVIDWLIKHSKT 175 (177)
Q Consensus 163 ~~l~~~l~~~~~~ 175 (177)
+++|++|.+.+.+
T Consensus 161 ~~l~~~l~~~~~~ 173 (186)
T 2bme_A 161 EEAFVQCARKILN 173 (186)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987754
No 48
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.98 E-value=3e-31 Score=179.02 Aligned_cols=161 Identities=20% Similarity=0.304 Sum_probs=127.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
.++.+||+++|.+|||||||++++.++.+.....++.+... ..+..+ .+.+.+||+||++.+...+..+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence 45679999999999999999999999888777777666443 333443 47899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
++|+|++++.++.....|+..+..... .+.|+++|+||+|+.+... .++..+.... .+++++++||++|.|+
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi 165 (179)
T 1z0f_A 92 LMVYDITRRSTYNHLSSWLTDARNLTN-PNTVIILIGNKADLEAQRDVTYEEAKQFAEE-----NGLLFLEASAKTGENV 165 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----TTCEEEECCTTTCTTH
T ss_pred EEEEeCcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECcccccccccCHHHHHHHHHH-----cCCEEEEEeCCCCCCH
Confidence 999999999889888888877755432 4789999999999965322 2333222211 2347999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030429 163 DAVIDWLIKHSKT 175 (177)
Q Consensus 163 ~~l~~~l~~~~~~ 175 (177)
+++|++|.+.+.+
T Consensus 166 ~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 166 EDAFLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988754
No 49
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.98 E-value=2.2e-31 Score=180.01 Aligned_cols=161 Identities=25% Similarity=0.433 Sum_probs=126.2
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSA 83 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (177)
.....+||+++|++|||||||++++.++.+.....++.+... ..+..++ +.+.+||+||++.+...+..++..+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 84 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG 84 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence 345779999999999999999999998887777667666444 3455555 789999999999998888899999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCC
Q 030429 84 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSIN 161 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 161 (177)
+++|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+... .++..+.... .+++++++||++|.|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~g 157 (181)
T 3tw8_B 85 VIVVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFAGQ-----MGIQLFETSAKENVN 157 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHHHH-----HTCCEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHHHH-----cCCeEEEEECCCCCC
Confidence 999999999999999988888876543 4789999999999876432 2222221111 123799999999999
Q ss_pred hHHHHHHHHHHhhh
Q 030429 162 IDAVIDWLIKHSKT 175 (177)
Q Consensus 162 i~~l~~~l~~~~~~ 175 (177)
+++++++|.+.+.+
T Consensus 158 i~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 158 VEEMFNCITELVLR 171 (181)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
No 50
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.98 E-value=4.2e-31 Score=181.83 Aligned_cols=160 Identities=21% Similarity=0.356 Sum_probs=127.8
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEeCC-----------------------------
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGN----------------------------- 56 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~----------------------------- 56 (177)
..+..+||+++|++|||||||+++|++..+.....++.+..... +..++
T Consensus 3 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (208)
T 3clv_A 3 EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQ 82 (208)
T ss_dssp CCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-----------------------------
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccc
Confidence 34678999999999999999999999988887777777644433 33332
Q ss_pred ----------EEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 030429 57 ----------VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 126 (177)
Q Consensus 57 ----------~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~ 126 (177)
..+.+||+||++.+...+..+++.+|++++|+|++++.++.....|+..+.... ..|+++|+||+|.
T Consensus 83 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D~ 159 (208)
T 3clv_A 83 HNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKIDK 159 (208)
T ss_dssp --CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTTC
T ss_pred cccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCCc
Confidence 789999999999999999999999999999999999999999888888886642 3899999999994
Q ss_pred cc-ccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHHHhhh
Q 030429 127 SE-ALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 127 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
.+ ....++..+.... .+++++++||++|.|+++++++|.+.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 160 NKFQVDILEVQKYAQD-----NNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp C-CCSCHHHHHHHHHH-----TTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHH-----cCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 32 2223333333221 23489999999999999999999988764
No 51
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.98 E-value=3e-31 Score=179.45 Aligned_cols=162 Identities=22% Similarity=0.300 Sum_probs=127.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
....+||+++|++|||||||++++.++.+.....++.+.... .+..+ .+.+.+||+||+.++...+..+++.+|++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 88 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 88 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence 456799999999999999999999988887776666664433 33333 57899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
++|+|++++.+++....|+..+.... ..+.|+++|+||+|+.+... .++..+.... .+++++++||++|.|+
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~g~gi 162 (181)
T 2efe_B 89 IIVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYAQE-----NGLFFMETSAKTATNV 162 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH-----TTCEEEECCSSSCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHHHH-----cCCEEEEEECCCCCCH
Confidence 99999999999999998888876643 25789999999999965332 2333222211 2347999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030429 163 DAVIDWLIKHSKTA 176 (177)
Q Consensus 163 ~~l~~~l~~~~~~~ 176 (177)
++++++|.+.+.+.
T Consensus 163 ~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 163 KEIFYEIARRLPRV 176 (181)
T ss_dssp HHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887653
No 52
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.98 E-value=4.2e-32 Score=181.79 Aligned_cols=159 Identities=22% Similarity=0.356 Sum_probs=126.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
.+.+||+++|++|||||||++++.++.+.....++.+.... ..... ...+.+||+||++++...+..++..+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 45799999999999999999999998887777777765443 33333 478999999999999998899999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
+|+|++++.++.....|+..+... ..+..|+++|+||+|+.+... .++..+... ..+.+++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 157 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYAD-----SIHAIFVETSAKNAININ 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHHH-----HcCCEEEEEeCCCCcCHH
Confidence 999999999999888888777553 235789999999999976432 222222111 123479999999999999
Q ss_pred HHHHHHHHHhh
Q 030429 164 AVIDWLIKHSK 174 (177)
Q Consensus 164 ~l~~~l~~~~~ 174 (177)
+++++|.+.+.
T Consensus 158 ~l~~~i~~~i~ 168 (170)
T 1z0j_A 158 ELFIEISRRIP 168 (170)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHh
Confidence 99999998765
No 53
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=1.1e-31 Score=183.49 Aligned_cols=159 Identities=24% Similarity=0.438 Sum_probs=128.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--E--EeCCEEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--V--TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
.+..+||+++|++|||||||+++|.++.+.....++.+..... + ....+.+.+||+||++.+...+..+++.+|++
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 99 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGF 99 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEE
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEE
Confidence 4567999999999999999999999888777766665533332 3 34578999999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHH---HHHHhCcccccCCceeEEEeeecCC
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQA---LVDQLGLESITDREVCCYMISCKDS 159 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~Sa~~~ 159 (177)
++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+... .++ +.+.. +++++++||++|
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~ 170 (191)
T 3dz8_A 100 ILMYDITNEESFNAVQDWATQIKTYS-WDNAQVILVGNKCDMEEERVVPTEKGQLLAEQL--------GFDFFEASAKEN 170 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH--------TCEEEECBTTTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHc--------CCeEEEEECCCC
Confidence 99999999999999888888776532 35789999999999865422 222 22222 237999999999
Q ss_pred CChHHHHHHHHHHhhhc
Q 030429 160 INIDAVIDWLIKHSKTA 176 (177)
Q Consensus 160 ~~i~~l~~~l~~~~~~~ 176 (177)
.|++++|++|.+.+.++
T Consensus 171 ~gi~~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 171 ISVRQAFERLVDAICDK 187 (191)
T ss_dssp BSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999987653
No 54
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.98 E-value=3.7e-31 Score=180.81 Aligned_cols=162 Identities=20% Similarity=0.277 Sum_probs=124.7
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcccee--EEEEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN--MRKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSA 83 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (177)
.....+||+++|++|||||||++++.++.+.....++.+.. ...+..++ +.+.+||+||++++...+..+++.+|+
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 96 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAG 96 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCE
Confidence 45667999999999999999999999888877666665533 33444444 789999999999999888899999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCC
Q 030429 84 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSIN 161 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 161 (177)
+++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+... .++..+... ..+++++++||++|.|
T Consensus 97 ii~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~g 170 (191)
T 2a5j_A 97 ALLVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFAR-----EHGLIFMETSAKTACN 170 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEEECTTTCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHHHH-----HcCCEEEEEeCCCCCC
Confidence 999999999999999888888776542 25789999999999975322 222222211 1124799999999999
Q ss_pred hHHHHHHHHHHhhh
Q 030429 162 IDAVIDWLIKHSKT 175 (177)
Q Consensus 162 i~~l~~~l~~~~~~ 175 (177)
++++|++|.+.+.+
T Consensus 171 i~~l~~~l~~~i~~ 184 (191)
T 2a5j_A 171 VEEAFINTAKEIYR 184 (191)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988754
No 55
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.97 E-value=8.5e-32 Score=180.28 Aligned_cols=160 Identities=24% Similarity=0.351 Sum_probs=120.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
..+||+++|++|||||||++++.++.+.....++.+... ..+..+ .+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 468999999999999999999998888776666666443 334443 4789999999999998888899999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC-HHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+... .++..+.... .+++++++||++|.|++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gv~~l 155 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAKE-----LGIPFIESSAKNDDNVNEI 155 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHHHH-----HTCCEEECBTTTTBSHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHHHHHH-----cCCeEEEEECCCCCCHHHH
Confidence 999999988888888887776543 24789999999999954322 2222211111 1237999999999999999
Q ss_pred HHHHHHHhhhc
Q 030429 166 IDWLIKHSKTA 176 (177)
Q Consensus 166 ~~~l~~~~~~~ 176 (177)
+++|.+.+.++
T Consensus 156 ~~~l~~~~~~~ 166 (170)
T 1g16_A 156 FFTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999988653
No 56
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.97 E-value=3.3e-31 Score=178.30 Aligned_cols=161 Identities=19% Similarity=0.141 Sum_probs=112.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcccee--EEEEEeC--CEEEEEEecCCchh--hHHhHHHHhcCCCE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN--MRKVTKG--NVTIKLWDLGGQRR--FRTMWERYCRGVSA 83 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~--~~~~~~~D~~g~~~--~~~~~~~~~~~~d~ 83 (177)
.+.+||+++|++|||||||++++.+..+..... +.+.+ ...+..+ .+.+.+||+||+.. +......+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 357899999999999999999999776644332 23322 3334444 36889999999887 55666778889999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCC
Q 030429 84 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSIN 161 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 161 (177)
+++|+|++++.+++....|+..+.......+.|+++|+||+|+.+... .++..+... ..+++++++||++|.|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~g~g 155 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAV-----VFDCKFIETSATLQHN 155 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHH-----HHTSEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHH-----HcCCeEEEEecCCCCC
Confidence 999999999999999998888887654445799999999999976432 222211111 1124799999999999
Q ss_pred hHHHHHHHHHHhhhc
Q 030429 162 IDAVIDWLIKHSKTA 176 (177)
Q Consensus 162 i~~l~~~l~~~~~~~ 176 (177)
++++|++|.+.+.++
T Consensus 156 i~~l~~~l~~~~~~~ 170 (175)
T 2nzj_A 156 VAELFEGVVRQLRLR 170 (175)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999987643
No 57
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.97 E-value=1e-30 Score=180.07 Aligned_cols=158 Identities=23% Similarity=0.448 Sum_probs=127.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
....+||+++|++|||||||+++++++.+.....++.+.... .+..+ .+.+.+||+||++++...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 84 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF 84 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence 356799999999999999999999998887777777765443 33333 57899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HH---HHHHHhCcccccCCceeEEEeeecCC
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQ---ALVDQLGLESITDREVCCYMISCKDS 159 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~ 159 (177)
++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+... .+ ++.+.+ +++++++||++|
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~ 155 (203)
T 1zbd_A 85 ILMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLADHL--------GFEFFEASAKDN 155 (203)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHH--------TCEEEECBTTTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHHHHHC--------CCeEEEEECCCC
Confidence 99999999999999888888775542 34789999999999976422 22 222222 237999999999
Q ss_pred CChHHHHHHHHHHhhh
Q 030429 160 INIDAVIDWLIKHSKT 175 (177)
Q Consensus 160 ~~i~~l~~~l~~~~~~ 175 (177)
.|++++|++|.+.+.+
T Consensus 156 ~gi~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 156 INVKQTFERLVDVICE 171 (203)
T ss_dssp BSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987754
No 58
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.97 E-value=1.2e-31 Score=184.40 Aligned_cols=165 Identities=22% Similarity=0.350 Sum_probs=116.4
Q ss_pred ecccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEeC--CEEEEEEecCCchhhHHhHHHHhcC
Q 030429 5 ISLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKG--NVTIKLWDLGGQRRFRTMWERYCRG 80 (177)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~ 80 (177)
.+...++.+||+++|++|||||||+++++++.+.....++.+... ..+..+ .+.+.+||+||++++...+..++..
T Consensus 21 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 100 (199)
T 2p5s_A 21 KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRK 100 (199)
T ss_dssp -------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHH
T ss_pred CCcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhh
Confidence 345567789999999999999999999998887766666665433 334444 4789999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc------c--CHHHHHHHhCcccccCCceeEE
Q 030429 81 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA------L--SKQALVDQLGLESITDREVCCY 152 (177)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~------~--~~~~~~~~~~~~~~~~~~~~~~ 152 (177)
+|++++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+. . ..++.. .+.. ..+++++
T Consensus 101 ~d~iilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~-~~~~----~~~~~~~ 174 (199)
T 2p5s_A 101 ADGVLLLYDVTCEKSFLNIREWVDMIEDAA-HETVPIMLVGNKADIRDTAATEGQKCVPGHFGE-KLAM----TYGALFC 174 (199)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHC----CCEEEEEECGGGHHHHHHTTCCCCCHHHHH-HHHH----HHTCEEE
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccccccccCHHHHH-HHHH----HcCCeEE
Confidence 999999999999999998888877665432 246899999999998631 1 111111 1111 1134799
Q ss_pred EeeecCCCChHHHHHHHHHHhhh
Q 030429 153 MISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 153 ~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
++||++|.|++++|++|.+.+.+
T Consensus 175 ~~SA~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 175 ETSAKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHTC
T ss_pred EeeCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999998865
No 59
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.97 E-value=5.5e-32 Score=183.54 Aligned_cols=161 Identities=24% Similarity=0.392 Sum_probs=99.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
.+..+||+++|++|||||||++++.++.+.....++.+... ..+..++ +.+.+||+||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 35679999999999999999999998877766666666443 3445555 8899999999999988888889999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
++|+|++++.+++....|+..+.... ..+.|+++|+||+|+.+... .++..+.... .+++++++||++|.|+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i 158 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLALD-----YGIKFMETSAKANINV 158 (183)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHHHHH-----HTCEEEECCC---CCH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccCCccCcCCHHHHHHHHHH-----cCCeEEEEeCCCCCCH
Confidence 99999999999999988888776542 24789999999999975322 2222222111 1247999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030429 163 DAVIDWLIKHSKT 175 (177)
Q Consensus 163 ~~l~~~l~~~~~~ 175 (177)
+++|++|.+.+.+
T Consensus 159 ~~l~~~l~~~i~~ 171 (183)
T 2fu5_C 159 ENAFFTLARDIKA 171 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
No 60
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.3e-31 Score=183.85 Aligned_cols=164 Identities=21% Similarity=0.198 Sum_probs=126.7
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-EEeC--CEEEEEEecCCchhhHHhHHHHhcCCCE
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSA 83 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (177)
+...+.+||+++|.+|||||||++++.++.+...+.++.+..... +..+ .+.+.+||+||+.. ...+..++..+|+
T Consensus 23 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ 101 (196)
T 2atv_A 23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG 101 (196)
T ss_dssp ----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence 345678999999999999999999999988877777777655433 3333 47899999999887 6677788899999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCC-
Q 030429 84 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSI- 160 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~- 160 (177)
+++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+... .++..+.... .+++++++||++|.
T Consensus 102 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~~Sa~~g~~ 176 (196)
T 2atv_A 102 FVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATE-----LACAFYECSACTGEG 176 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH-----HTSEEEECCTTTCTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHH-----hCCeEEEECCCcCCc
Confidence 999999999999999888888776644445789999999999976322 2222221111 13479999999999
Q ss_pred ChHHHHHHHHHHhhhc
Q 030429 161 NIDAVIDWLIKHSKTA 176 (177)
Q Consensus 161 ~i~~l~~~l~~~~~~~ 176 (177)
|++++|++|.+.+.++
T Consensus 177 gi~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 177 NITEIFYELCREVRRR 192 (196)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999987653
No 61
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.97 E-value=2.1e-31 Score=182.42 Aligned_cols=166 Identities=19% Similarity=0.181 Sum_probs=125.5
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCC-----------CCccceeEEE-----EEeCCEEEEEEecCC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDM-----------IPTVGFNMRK-----VTKGNVTIKLWDLGG 66 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~-----------~~t~~~~~~~-----~~~~~~~~~~~D~~g 66 (177)
.......+..+||+++|++|||||||++.+. +.+...+ .+|.+..... +....+.+++|||||
T Consensus 5 ~~~~~~~~~~~ki~vvG~~~~GKssL~~~l~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G 83 (198)
T 3t1o_A 5 TINFANREINFKIVYYGPGLSGKTTNLKWIY-SKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPG 83 (198)
T ss_dssp EEETTTTEEEEEEEEECSTTSSHHHHHHHHH-HTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCS
T ss_pred ccchhccccccEEEEECCCCCCHHHHHHHHH-hhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCC
Confidence 3334455678999999999999999997665 4444332 2233333322 122457899999999
Q ss_pred chhhHHhHHHHhcCCCEEEEEEeCC------CCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhC
Q 030429 67 QRRFRTMWERYCRGVSAILYVVDAA------DRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLG 140 (177)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~ 140 (177)
++++...+..+++.+|++++|+|++ +.+++..+..|+..+. ....+.|+++|+||+|+.+....++..+...
T Consensus 84 ~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~--~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~ 161 (198)
T 3t1o_A 84 QVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG--LTLDDVPIVIQVNKRDLPDALPVEMVRAVVD 161 (198)
T ss_dssp CCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT--CCTTSSCEEEEEECTTSTTCCCHHHHHHHHC
T ss_pred hHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc--cccCCCCEEEEEEchhcccccCHHHHHHHHH
Confidence 9999999999999999999999999 4456667777777662 2335789999999999988766666666554
Q ss_pred cccccCCce-eEEEeeecCCCChHHHHHHHHHHhhhc
Q 030429 141 LESITDREV-CCYMISCKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 141 ~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 176 (177)
.. ++ +++++||++|.|++++|++|.+.+.++
T Consensus 162 ~~-----~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 162 PE-----GKFPVLEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp TT-----CCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred hc-----CCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 32 23 799999999999999999999987653
No 62
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.97 E-value=3.9e-31 Score=180.90 Aligned_cols=163 Identities=22% Similarity=0.346 Sum_probs=121.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
....+||+++|.+|||||||+++|.++.+.....++.+... ..+..++ +.+.+||+||++++...+..+++.+|++
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i 102 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI 102 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 35679999999999999999999998887766666666443 3344444 7899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+... .++..+... . ....+++++||++|.|+
T Consensus 103 ilV~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~-~---~~~~~~~~~SA~~g~gi 177 (192)
T 2il1_A 103 ILVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGEKFAQ-Q---ITGMRFCEASAKDNFNV 177 (192)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-T---STTCEEEECBTTTTBSH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHH-h---cCCCeEEEEeCCCCCCH
Confidence 9999999998998888877666443 225789999999999976432 222222211 1 12457999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030429 163 DAVIDWLIKHSKTA 176 (177)
Q Consensus 163 ~~l~~~l~~~~~~~ 176 (177)
+++|++|.+.+.++
T Consensus 178 ~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 178 DEIFLKLVDDILKK 191 (192)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987653
No 63
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.97 E-value=1.7e-31 Score=185.74 Aligned_cols=161 Identities=20% Similarity=0.222 Sum_probs=125.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
....+||+++|.+|||||||+++|.++.+...+.+|.+..... +....+.+.+|||||++++...+..++..+|+++
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 103 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 103 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence 4567999999999999999999999999888888887765542 2345588999999999999999999999999999
Q ss_pred EEEeCCCCCCHHH-HHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--------------cCHHHHHHHhCcccccCCce-
Q 030429 86 YVVDAADRDSVPI-ARSELHELLMKPSLSGIPLLVLGNKIDKSEA--------------LSKQALVDQLGLESITDREV- 149 (177)
Q Consensus 86 ~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~- 149 (177)
+|||++++.++.. ...|+..+.... .+.|+++|+||+|+.+. ...++..+... ..++
T Consensus 104 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~ 176 (214)
T 3q3j_B 104 LCFDISRPETVDSALKKWRTEILDYC--PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAK-----QLGAE 176 (214)
T ss_dssp EEEETTCTHHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHH-----HHTCS
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHH-----HcCCC
Confidence 9999999999998 577777765542 47899999999999753 11222111111 1123
Q ss_pred eEEEeeecCCCC-hHHHHHHHHHHhhhc
Q 030429 150 CCYMISCKDSIN-IDAVIDWLIKHSKTA 176 (177)
Q Consensus 150 ~~~~~Sa~~~~~-i~~l~~~l~~~~~~~ 176 (177)
++++|||++|.| ++++|+.|.+.+.+.
T Consensus 177 ~~~e~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 177 IYLEGSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp EEEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred EEEEeccCCCcccHHHHHHHHHHHHhcc
Confidence 799999999998 999999999987653
No 64
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.5e-31 Score=179.70 Aligned_cols=162 Identities=25% Similarity=0.419 Sum_probs=119.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEE--EEeC--CEEEEEEecCCchhhHHhHHHHhcCCCE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYS-EDMIPTVGFNMRK--VTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSA 83 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (177)
.+..+||+++|++|||||||++++.++.+. ....++.+..... +..+ .+.+.+||+||++.+...+..++..+|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 467899999999999999999999988874 3455666655443 3344 3689999999999999888899999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCC
Q 030429 84 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSIN 161 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 161 (177)
+++|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+... .++..+.... .+++++++||++|.|
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~g 160 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLAKE-----YGLPFMETSAKTGLN 160 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHHHH-----HTCCEEECCTTTCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHHHHHH-----cCCeEEEEeCCCCCC
Confidence 9999999999888888888877765432 5789999999999976432 2222221111 123799999999999
Q ss_pred hHHHHHHHHHHhhhc
Q 030429 162 IDAVIDWLIKHSKTA 176 (177)
Q Consensus 162 i~~l~~~l~~~~~~~ 176 (177)
+++++++|.+.+.++
T Consensus 161 i~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 161 VDLAFTAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987653
No 65
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.97 E-value=3.2e-31 Score=180.82 Aligned_cols=159 Identities=26% Similarity=0.451 Sum_probs=127.8
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEe--CCEEEEEEecCCchhhHHhHHHHhcCCCE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSA 83 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (177)
..+..+||+++|++|||||||+++++++.+.....++.+.... .+.. ..+.+.+||+||++++...+..++..+|+
T Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 97 (189)
T 2gf9_A 18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMG 97 (189)
T ss_dssp TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence 3456799999999999999999999998887777777665443 3333 35789999999999998888889999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HH---HHHHHhCcccccCCceeEEEeeecC
Q 030429 84 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQ---ALVDQLGLESITDREVCCYMISCKD 158 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (177)
+++|+|++++.+++....|+..+.... ..+.|+++|+||+|+.+... .+ ++.+.++ ++++++||++
T Consensus 98 ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~ 168 (189)
T 2gf9_A 98 FLLMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRLADDLG--------FEFFEASAKE 168 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT--------CEEEECBTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHHHHHcC--------CeEEEEECCC
Confidence 999999999989988888887775542 34789999999999976432 22 2222222 3799999999
Q ss_pred CCChHHHHHHHHHHhhh
Q 030429 159 SINIDAVIDWLIKHSKT 175 (177)
Q Consensus 159 ~~~i~~l~~~l~~~~~~ 175 (177)
|.|+++++++|.+.+.+
T Consensus 169 g~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 169 NINVKQVFERLVDVICE 185 (189)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999998764
No 66
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.97 E-value=1.8e-31 Score=180.29 Aligned_cols=157 Identities=17% Similarity=0.241 Sum_probs=116.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM-RKVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
..+.+||+++|++|||||||++++.++.+.. +.+|.+... ..+..+ .+.+.+|||||+++ ..+++++|+++
T Consensus 4 ~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 4567999999999999999999999888876 556655332 234444 36789999999877 34577799999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHc--CCCCCCCcEEEEeeCCCccc--c--cCHHHHHHHhCcccccCCceeEEEeeecCC
Q 030429 86 YVVDAADRDSVPIARSELHELLM--KPSLSGIPLLVLGNKIDKSE--A--LSKQALVDQLGLESITDREVCCYMISCKDS 159 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~iiv~nK~D~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 159 (177)
+|+|++++.++..+..|+..+.. .....+.|+++|+||+|+.+ . ...++..+.... ....+++++||++|
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~----~~~~~~~~~Sa~~~ 153 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXAD----MKRCSYYETXATYG 153 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHH----HSSEEEEEEBTTTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHh----hcCCeEEEEecccc
Confidence 99999999999999886443322 22235789999999999842 1 122222221111 12357999999999
Q ss_pred CChHHHHHHHHHHhhh
Q 030429 160 INIDAVIDWLIKHSKT 175 (177)
Q Consensus 160 ~~i~~l~~~l~~~~~~ 175 (177)
.|++++|++|.+.+.+
T Consensus 154 ~~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 154 LNVDRVFQEVAQKVVT 169 (178)
T ss_dssp BTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988754
No 67
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.2e-31 Score=178.45 Aligned_cols=161 Identities=21% Similarity=0.295 Sum_probs=124.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-EEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
+.+||+++|++|||||||++++.++.+.....++.+..... ... ..+.+.+|||||+.++...+..++..+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 46899999999999999999999888777777776655443 222 346899999999999999899999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCC-CCCCCcEEEEeeCCCcccccCH--HHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 88 VDAADRDSVPIARSELHELLMKP-SLSGIPLLVLGNKIDKSEALSK--QALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
+|++++.+++....|+..+.... ...+.|+++|+||+|+.+.... .+..+... ..+.+++++||++|.|+++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 156 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALAR-----TWKCAFMETSAKLNHNVKE 156 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTCEEEECBTTTTBSHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHH-----HhCCeEEEecCCCCcCHHH
Confidence 99999888888888877665431 2246899999999998754322 22111111 1124799999999999999
Q ss_pred HHHHHHHHhhhc
Q 030429 165 VIDWLIKHSKTA 176 (177)
Q Consensus 165 l~~~l~~~~~~~ 176 (177)
++++|.+.+.++
T Consensus 157 l~~~l~~~~~~~ 168 (172)
T 2erx_A 157 LFQELLNLEKRR 168 (172)
T ss_dssp HHHHHHHTCCSS
T ss_pred HHHHHHHHHhhh
Confidence 999999987654
No 68
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.97 E-value=1.6e-31 Score=179.02 Aligned_cols=160 Identities=27% Similarity=0.326 Sum_probs=120.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
++.+||+++|++|||||||++++.++.+.....++.+.... .+.. ..+.+.+||+||++++...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 56799999999999999999999988887777777765443 3433 3478999999999999888888899999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ..++..+.... .+.+++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~ 157 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYAES-----VGAKHYHTSAKQNKGIE 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHHHH-----TTCEEEEEBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHHHH-----cCCeEEEecCCCCCCHH
Confidence 9999999999999888877764432 1468999999999997632 22222222111 12479999999999999
Q ss_pred HHHHHHHHHhhh
Q 030429 164 AVIDWLIKHSKT 175 (177)
Q Consensus 164 ~l~~~l~~~~~~ 175 (177)
++|++|.+.+.+
T Consensus 158 ~l~~~l~~~~~~ 169 (170)
T 1z08_A 158 ELFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
No 69
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.97 E-value=3.1e-31 Score=176.58 Aligned_cols=159 Identities=18% Similarity=0.274 Sum_probs=125.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
.++|+++|++|||||||++++.++.+.....++.+.... .+..+ .+.+.+||+||+.++...+..++..+|++++|+
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 82 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 82 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEE
Confidence 579999999999999999999988877766666654332 23333 467899999999999888888999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC-HHHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
|++++.++.....|+..+.......+.|+++|+||+|+.+... .++..+.... .+++++++||++|.|++++++
T Consensus 83 d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~~ 157 (166)
T 2ce2_X 83 AINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARS-----YGIPYIETSAKTRQGVEDAFY 157 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHH-----HTCCEEEECTTTCTTHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHH-----cCCeEEEecCCCCCCHHHHHH
Confidence 9999999998888888776654445789999999999876322 2222221111 123799999999999999999
Q ss_pred HHHHHhhh
Q 030429 168 WLIKHSKT 175 (177)
Q Consensus 168 ~l~~~~~~ 175 (177)
+|.+.+.+
T Consensus 158 ~l~~~~~~ 165 (166)
T 2ce2_X 158 TLVREIRQ 165 (166)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998865
No 70
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.97 E-value=2.7e-31 Score=182.20 Aligned_cols=163 Identities=18% Similarity=0.176 Sum_probs=120.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcc--ceeEEEEEeC--CEEEEEEecCCchhhHH-hHHHHhcCCCE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTV--GFNMRKVTKG--NVTIKLWDLGGQRRFRT-MWERYCRGVSA 83 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~--~~~~~~~~~~--~~~~~~~D~~g~~~~~~-~~~~~~~~~d~ 83 (177)
....+||+++|++|||||||+++|.+........++. ......+..+ .+.+.+|||+|++.+.. ....+++.+|+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~ 99 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA 99 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence 3467999999999999999999997543322222222 2333334444 46789999999987765 66778889999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCCCC
Q 030429 84 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSIN 161 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 161 (177)
+++|+|++++.++..+..|+..+.........|+++|+||+|+.+.. ..++..+.... .+++++++||++|.|
T Consensus 100 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~-----~~~~~~e~Sa~~~~~ 174 (195)
T 3cbq_A 100 FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGT-----LSCKHIETSAALHHN 174 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHH-----TTCEEEEEBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHH-----hCCEEEEEcCCCCCC
Confidence 99999999999999999999888665443578999999999997532 22222221111 124799999999999
Q ss_pred hHHHHHHHHHHhhhc
Q 030429 162 IDAVIDWLIKHSKTA 176 (177)
Q Consensus 162 i~~l~~~l~~~~~~~ 176 (177)
++++|++|.+.+.+.
T Consensus 175 v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 175 TRELFEGAVRQIRLR 189 (195)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988654
No 71
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.97 E-value=1e-31 Score=185.51 Aligned_cols=161 Identities=17% Similarity=0.201 Sum_probs=94.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCccc--eeEEEEEeC----CEEEEEEecCCchhhHHhHHHHhcCC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATG--GYSEDMIPTVG--FNMRKVTKG----NVTIKLWDLGGQRRFRTMWERYCRGV 81 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~--~~~~~~~~t~~--~~~~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~ 81 (177)
...++|+++|++|||||||++++.++ .+...+.+|.+ .....+..+ .+.+.+|||||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 56799999999999999999999987 66666667765 334445544 57899999999999999989999999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCC--CCCCcEEEEeeCCCccc-cc--CHHHHHHHhCcccccCCceeEEEeee
Q 030429 82 SAILYVVDAADRDSVPIARSELHELLMKPS--LSGIPLLVLGNKIDKSE-AL--SKQALVDQLGLESITDREVCCYMISC 156 (177)
Q Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiv~nK~D~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (177)
|++++|+|++++.+++....|+..+..... ..+.|+++|+||+|+.+ .. ..++..+.... .+++++++||
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~-----~~~~~~~~Sa 172 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATT-----NTLDFFDVSA 172 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHH-----TTCEEEECCC
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHH-----cCCEEEEecc
Confidence 999999999999999999988888866433 25789999999999976 22 22222222211 1247999999
Q ss_pred cC-CCChHHHHHHHHHHhhh
Q 030429 157 KD-SINIDAVIDWLIKHSKT 175 (177)
Q Consensus 157 ~~-~~~i~~l~~~l~~~~~~ 175 (177)
++ |.|++++|++|.+.+.+
T Consensus 173 ~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 173 NPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp -------CHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHH
Confidence 99 99999999999987654
No 72
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.97 E-value=1.7e-31 Score=180.67 Aligned_cols=163 Identities=26% Similarity=0.458 Sum_probs=115.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEeC---CEEEEEEecCCchhhHHhHHHHhcCCCE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKG---NVTIKLWDLGGQRRFRTMWERYCRGVSA 83 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (177)
.+..++|+++|++|||||||++++.++.+.....++.+... ..+..+ ...+.+||+||++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 46679999999999999999999998888777767665433 334333 4789999999999999988899999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHcCC---CCCCCcEEEEeeCCCccccc---CHHHHHHHhCcccccCCceeEEEeeec
Q 030429 84 ILYVVDAADRDSVPIARSELHELLMKP---SLSGIPLLVLGNKIDKSEAL---SKQALVDQLGLESITDREVCCYMISCK 157 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~iiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (177)
+++|+|++++.+++....|+..+.... ...+.|+++|+||+|+.+.. ..++..+... .....+++++||+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~ 160 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK----SLGDIPLFLTSAK 160 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH----HTTSCCEEEEBTT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH----hcCCCeEEEEecC
Confidence 999999999999988888887765532 22578999999999995432 2222222211 1234579999999
Q ss_pred CCCChHHHHHHHHHHhhh
Q 030429 158 DSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 158 ~~~~i~~l~~~l~~~~~~ 175 (177)
+|.|++++|++|.+.+.+
T Consensus 161 ~~~gi~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 161 NAINVDTAFEEIARSALQ 178 (182)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999998764
No 73
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.97 E-value=5.5e-31 Score=181.26 Aligned_cols=161 Identities=22% Similarity=0.317 Sum_probs=119.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcccee--EEEEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN--MRKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
.++.+||+++|++|||||||+++++++.+.....++.+.. ...+..++ +.+.+|||||+..+...+..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 4667999999999999999999999888777666666533 33444554 7899999999999988888899999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
++|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+... .++..+... ..+++++++||++|.|+
T Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~SA~~g~gi 175 (200)
T 2o52_A 102 LLVYDITSRETYNSLAAWLTDARTLAS-PNIVVILCGNKKDLDPEREVTFLEASRFAQ-----ENELMFLETSALTGENV 175 (200)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEEECTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCCcccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCH
Confidence 999999999999998888887755322 5789999999999965322 222222211 12347999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030429 163 DAVIDWLIKHSKT 175 (177)
Q Consensus 163 ~~l~~~l~~~~~~ 175 (177)
+++|++|.+.+.+
T Consensus 176 ~~l~~~l~~~i~~ 188 (200)
T 2o52_A 176 EEAFLKCARTILN 188 (200)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
No 74
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.97 E-value=7.3e-31 Score=179.06 Aligned_cols=164 Identities=16% Similarity=0.238 Sum_probs=117.1
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
...+.++|+++|.+|||||||++++.++.+.....++.+.... .+..+ .+.+.+||+||+.++...+..++..+|++
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 96 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 96 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEE
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence 4456799999999999999999999988877666666554432 33333 36799999999999999889999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc-CHHHHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL-SKQALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
++|+|++++.++.....|+..+.......+.|+++|+||+|+.+.. ..++..+.... .+++++++||++|.|++
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~ 171 (190)
T 3con_A 97 LCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKS-----YGIPFIETSAKTRQGVE 171 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHH-----HTCCEEECCTTTCTTHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHH-----cCCeEEEEeCCCCCCHH
Confidence 9999999999999888888777654433578999999999987632 22222222111 12369999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030429 164 AVIDWLIKHSKTA 176 (177)
Q Consensus 164 ~l~~~l~~~~~~~ 176 (177)
+++++|.+.+.+.
T Consensus 172 ~l~~~l~~~~~~~ 184 (190)
T 3con_A 172 DAFYTLVREIRQY 184 (190)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
No 75
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.97 E-value=1.7e-31 Score=182.01 Aligned_cols=162 Identities=23% Similarity=0.277 Sum_probs=121.9
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-EEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
...+.+||+++|.+|||||||+++++++.+...+.+|.+..... ... ..+.+.+|||||++.+... ..++..+|++
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 44677999999999999999999999988887777777755422 233 3478999999999888764 5688999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCC--CCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeee-cCC
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPS--LSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISC-KDS 159 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~ 159 (177)
++|||++++.+++.+..|+..+..... ..+.|+++|+||+|+.+... .++..+.... .+++++++|| ++|
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~e~Sa~~~g 170 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGR-----FGCLFFEVSACLDF 170 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHH-----HTCEEEECCSSSCS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHH-----cCCcEEEEeecCcc
Confidence 999999999999999988887765421 14789999999999965322 2222221111 1237999999 899
Q ss_pred CChHHHHHHHHHHhhh
Q 030429 160 INIDAVIDWLIKHSKT 175 (177)
Q Consensus 160 ~~i~~l~~~l~~~~~~ 175 (177)
.|++++|+.|.+.+.+
T Consensus 171 ~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 171 EHVQHVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHhh
Confidence 9999999999998765
No 76
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.97 E-value=1.5e-31 Score=185.96 Aligned_cols=166 Identities=22% Similarity=0.265 Sum_probs=105.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
..+.+||+++|++|||||||+++++++.+...+.++...... .+..+ .+.+.+|||||++++...+..++..+|+++
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 356799999999999999999999988877666666654332 23333 468999999999999998899999999999
Q ss_pred EEEeCCCCCCHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCc---------cccc-CCceeEEEe
Q 030429 86 YVVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGL---------ESIT-DREVCCYMI 154 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~ 154 (177)
+|+|++++.++..+. .|+..+.... .+.|+++|+||+|+.+.....+..+.... .... ....+++++
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 188 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFC--KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC 188 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEe
Confidence 999999999999886 5666554432 46899999999999765322111111000 0000 112379999
Q ss_pred eecCCCChHHHHHHHHHHhhhc
Q 030429 155 SCKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 155 Sa~~~~~i~~l~~~l~~~~~~~ 176 (177)
||++|.|++++|++|.+.+.+.
T Consensus 189 SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 189 SARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHC
T ss_pred cCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999988754
No 77
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.97 E-value=3.1e-31 Score=183.10 Aligned_cols=163 Identities=25% Similarity=0.400 Sum_probs=127.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
.+..++|+++|++|||||||++++.+..+...+.++.+..... +..+ .+.+.+||+||+..+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 4677999999999999999999999988887777777655443 3333 47899999999999988888899999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCC---CCCCcEEEEeeCCCcccccC-HHHHHHHhCcccccCCceeEEEeeecCCC
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPS---LSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKDSI 160 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (177)
++|+|++++.++.....|+..+..... ..+.|+++|+||+|+.+... .++..+... .....+++++||++|.
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~ 160 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY----SKNNIPYFETSAKEAI 160 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH----HTTSCCEEECBTTTTB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHH----hcCCceEEEEeCCCCC
Confidence 999999999888888888777654322 24689999999999974322 222222211 1234579999999999
Q ss_pred ChHHHHHHHHHHhhh
Q 030429 161 NIDAVIDWLIKHSKT 175 (177)
Q Consensus 161 ~i~~l~~~l~~~~~~ 175 (177)
|++++|++|.+.+.+
T Consensus 161 gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 161 NVEQAFQTIARNALK 175 (207)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988754
No 78
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.97 E-value=6.6e-31 Score=181.53 Aligned_cols=161 Identities=27% Similarity=0.408 Sum_probs=128.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
.+..+||+++|++|||||||+++|.++.+...+.++.+.... .+..++ +.+.+|||||++++...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v 84 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI 84 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence 466799999999999999999999998888777777664443 344444 6899999999999988888999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
++|+|++++.++..+..|+..+.... ....|+++|+||+|+.+... .++..+... ..+++++++||++|.|+
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi 158 (206)
T 2bcg_Y 85 IIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD-----ANKMPFLETSALDSTNV 158 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCCEEECCTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHH-----HcCCeEEEEeCCCCCCH
Confidence 99999999999999988888775543 24789999999999976422 222222211 12347999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030429 163 DAVIDWLIKHSKT 175 (177)
Q Consensus 163 ~~l~~~l~~~~~~ 175 (177)
+++|++|.+.+.+
T Consensus 159 ~~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 159 EDAFLTMARQIKE 171 (206)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
No 79
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.5e-30 Score=180.00 Aligned_cols=168 Identities=18% Similarity=0.223 Sum_probs=121.1
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCE
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSA 83 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (177)
+-....+||+++|.+|||||||++++.++.+...+.++.+.... .+..++ +.+.+|||||++++...+..++..+|+
T Consensus 20 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 99 (207)
T 2fv8_A 20 FQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV 99 (207)
T ss_dssp GGGSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCE
T ss_pred cccccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCE
Confidence 34456789999999999999999999988887766666654432 234443 789999999999998888889999999
Q ss_pred EEEEEeCCCCCCHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccc----------cCCceeEE
Q 030429 84 ILYVVDAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI----------TDREVCCY 152 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 152 (177)
+++|+|++++.++... ..|+..+.... .+.|+++|+||+|+.+.....+....+..... .....+++
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 177 (207)
T 2fv8_A 100 ILMCFSVDSPDSLENIPEKWVPEVKHFC--PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYL 177 (207)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEE
Confidence 9999999999888888 45555554322 47899999999999765322222222111100 01122799
Q ss_pred EeeecCCCChHHHHHHHHHHhhhc
Q 030429 153 MISCKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 153 ~~Sa~~~~~i~~l~~~l~~~~~~~ 176 (177)
++||++|.|+++++++|.+.+.+.
T Consensus 178 ~~SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 178 ECSAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHSC
T ss_pred EeeCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999987654
No 80
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.97 E-value=8.2e-32 Score=187.59 Aligned_cols=162 Identities=22% Similarity=0.311 Sum_probs=126.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEe--C-C--EEEEEEecCCchhhHHhHHHHhcCCCE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK--G-N--VTIKLWDLGGQRRFRTMWERYCRGVSA 83 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~--~-~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (177)
....+||+++|.+|||||||+++++++.+.....++.+........ . + +.+.+|||||++.+...+..++..+|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 3467999999999999999999999888877777777765555432 1 1 789999999999998888899999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCC
Q 030429 84 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSIN 161 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 161 (177)
+++|+|++++.++.....|+..+..... .+.|+++|+||+|+.+... .+...+... ..+++++++||++|.|
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~g 161 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQAVVG-NEAPIVVCANKIDIKNRQKISKKLVMEVLK-----GKNYEYFEISAKTAHN 161 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHC-SSSCEEEEEECTTCC----CCHHHHHHHTT-----TCCCEEEEEBTTTTBT
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCCccccccCHHHHHHHHH-----HcCCcEEEEecCCCCC
Confidence 9999999999999888888777755422 3589999999999976422 222222222 2345799999999999
Q ss_pred hHHHHHHHHHHhhhc
Q 030429 162 IDAVIDWLIKHSKTA 176 (177)
Q Consensus 162 i~~l~~~l~~~~~~~ 176 (177)
++++|++|.+.+.+.
T Consensus 162 v~~l~~~l~~~~~~~ 176 (218)
T 4djt_A 162 FGLPFLHLARIFTGR 176 (218)
T ss_dssp TTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999988654
No 81
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=8.6e-31 Score=181.63 Aligned_cols=158 Identities=27% Similarity=0.439 Sum_probs=125.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
.+..++|+++|++|||||||++++++..+.....++.+... ..+..++ +.+.+|||||++.+...+..++..+|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 45679999999999999999999998888777777666443 3455555 7899999999999998888999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC-HH---HHHHHhCcccccCCceeEEEeeecCCC
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQ---ALVDQLGLESITDREVCCYMISCKDSI 160 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (177)
++|+|++++.++.....|+..+..... .+.|+++|+||+|+.+... .+ ++.+.+ +++++++||++|.
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~~ 167 (213)
T 3cph_A 97 ILVYDVTDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDMETRVVTADQGEALAKEL--------GIPFIESSAKNDD 167 (213)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTT-TCSEEEEEEECTTCSSCCSCHHHHHHHHHHH--------TCCEEECBTTTTB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCCcccccCHHHHHHHHHHc--------CCEEEEEeCCCCC
Confidence 999999999888888888877755432 4689999999999954322 22 222222 2369999999999
Q ss_pred ChHHHHHHHHHHhhh
Q 030429 161 NIDAVIDWLIKHSKT 175 (177)
Q Consensus 161 ~i~~l~~~l~~~~~~ 175 (177)
|++++|++|.+.+.+
T Consensus 168 gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 168 NVNEIFFTLAKLIQE 182 (213)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988754
No 82
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-30 Score=182.59 Aligned_cols=162 Identities=22% Similarity=0.340 Sum_probs=122.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcccee--EEEEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN--MRKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
.+..++|+++|++|||||||+++|.++.+...+.++.+.. ...+..++ +.+.+|||||++++...+..+++.+|++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 4667999999999999999999999988877766666643 33455555 7899999999999998888999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+... .++..+... ..+++++++||++|.|+
T Consensus 90 ilV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi 163 (223)
T 3cpj_B 90 LIVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQ-----ENQLLFTETSALNSENV 163 (223)
T ss_dssp EEEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCCC-CCCH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCH
Confidence 99999999999999988888775543 25789999999999975322 222222211 12347999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030429 163 DAVIDWLIKHSKTA 176 (177)
Q Consensus 163 ~~l~~~l~~~~~~~ 176 (177)
+++|++|.+.+.++
T Consensus 164 ~~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 164 DKAFEELINTIYQK 177 (223)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987643
No 83
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.97 E-value=3.3e-31 Score=179.91 Aligned_cols=165 Identities=20% Similarity=0.245 Sum_probs=123.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
.+.+||+++|++|||||||++++.++.+...+.++.+.... .+.. ..+.+.+||+||++++...+..++..+|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 46789999999999999999999988887776666654332 2333 34678899999999998888889999999999
Q ss_pred EEeCCCCCCHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcc---------cccCCc-eeEEEee
Q 030429 87 VVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLE---------SITDRE-VCCYMIS 155 (177)
Q Consensus 87 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~S 155 (177)
|+|++++.++.... .|+..+.... .+.|+++|+||+|+.+.....+..+..... .....+ .+++++|
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 99999998898887 5665554432 378999999999997642211111111000 000112 3799999
Q ss_pred ecCCCChHHHHHHHHHHhhhc
Q 030429 156 CKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 156 a~~~~~i~~l~~~l~~~~~~~ 176 (177)
|++|.|++++|++|.+.+.+.
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSCC
T ss_pred CCCccCHHHHHHHHHHHHhcc
Confidence 999999999999999987653
No 84
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=3.4e-31 Score=182.89 Aligned_cols=164 Identities=20% Similarity=0.249 Sum_probs=120.8
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEE--eCCEEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
...+.+||+++|.+|||||||++++.++.+...+.++.+.... .+. ...+.+.+|||||++++...+..++..+|++
T Consensus 26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 3467799999999999999999999988887777666653333 223 3456777999999999998888899999999
Q ss_pred EEEEeCCCCCCHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCccc----------ccCCceeEEE
Q 030429 85 LYVVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES----------ITDREVCCYM 153 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~ 153 (177)
++|+|++++.++.... .|+..+.... .+.|+++|+||+|+.+.....+..+...... ......++++
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 183 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 183 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEE
Confidence 9999999999999887 5555554432 5789999999999976533222222111100 0112236999
Q ss_pred eeecCCCChHHHHHHHHHHh
Q 030429 154 ISCKDSINIDAVIDWLIKHS 173 (177)
Q Consensus 154 ~Sa~~~~~i~~l~~~l~~~~ 173 (177)
+||++|.|++++|++|.+.+
T Consensus 184 ~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 184 CSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CCTTTCTTHHHHHHHHHHTT
T ss_pred eeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999998864
No 85
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.97 E-value=2.5e-30 Score=179.60 Aligned_cols=163 Identities=24% Similarity=0.313 Sum_probs=116.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeC---CEEEEEEecCCchhhHH-hHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKG---NVTIKLWDLGGQRRFRT-MWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~D~~g~~~~~~-~~~~~~~~~d~~i 85 (177)
++.+||+++|++|||||||+++|+++.+...+.++ ......+..+ .+.+.+|||||+.++.. .+..+++.+|+++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i 83 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVV 83 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEE
Confidence 56789999999999999999999988877666543 3444445555 68999999999999987 7788899999999
Q ss_pred EEEeCCCCC-CHHHHHHHHHHHHcC--CCCCCCcEEEEeeCCCcccccCHHHHHHHhCc---------------------
Q 030429 86 YVVDAADRD-SVPIARSELHELLMK--PSLSGIPLLVLGNKIDKSEALSKQALVDQLGL--------------------- 141 (177)
Q Consensus 86 ~v~d~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~--------------------- 141 (177)
+|+|+++.. ++.....++...+.. ....+.|+++|+||+|+.+....+...+.+..
T Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~ 163 (214)
T 2fh5_B 84 FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSST 163 (214)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred EEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCcc
Confidence 999998742 344555555554332 12246899999999999876554333222210
Q ss_pred --cccc---------C--CceeEEEeeecCC------CChHHHHHHHHHHh
Q 030429 142 --ESIT---------D--REVCCYMISCKDS------INIDAVIDWLIKHS 173 (177)
Q Consensus 142 --~~~~---------~--~~~~~~~~Sa~~~------~~i~~l~~~l~~~~ 173 (177)
.... . ..+++++|||++| .|++++|++|.+.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 164 APAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp -CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 0000 1 1678999999999 99999999998753
No 86
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.97 E-value=4.9e-31 Score=182.91 Aligned_cols=159 Identities=23% Similarity=0.318 Sum_probs=123.9
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
.....+||+++|++|+|||||++++.++.+...+.+|.+.... .+.. ..+.+.+|||||++++...+..+++.+|++
T Consensus 5 ~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 84 (212)
T 2j0v_A 5 SVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIF 84 (212)
T ss_dssp SCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEE
T ss_pred CcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEE
Confidence 3457899999999999999999999988887777777764443 2333 347999999999999998888899999999
Q ss_pred EEEEeCCCCCCHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCccccc----------CHHH---HHHHhCcccccCCcee
Q 030429 85 LYVVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEAL----------SKQA---LVDQLGLESITDREVC 150 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~----------~~~~---~~~~~~~~~~~~~~~~ 150 (177)
++|+|++++.++.... .|+..+.... ++.|+++|+||+|+.+.. ..++ +.+.++ ..+
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~~~ 155 (212)
T 2j0v_A 85 VLAFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIG-------AAA 155 (212)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHT-------CSE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcC-------Cce
Confidence 9999999999999886 5666664432 378999999999986542 1222 222221 137
Q ss_pred EEEeeecCCCChHHHHHHHHHHhhh
Q 030429 151 CYMISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 151 ~~~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
++++||++|.|++++|++|.+.+.+
T Consensus 156 ~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 156 YIECSSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEEccCCCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999999998764
No 87
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=4.6e-31 Score=181.15 Aligned_cols=162 Identities=18% Similarity=0.271 Sum_probs=125.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-EEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
...++|+++|.+|||||||+++|.++.+...+.++.+..... ... ..+.+.+|||||+..+...+..++..+|++++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL 85 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence 467999999999999999999999888877777776654443 222 34689999999999999989999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCC-CCCCcEEEEeeCCCcccccC-HHHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
|+|++++.+++....|+..+..... ..+.|+++|+||+|+.+... .++..+.... ..++++++||++|.|+++
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~ 160 (199)
T 2gf0_A 86 VFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQE-----WKCAFMETSAKMNYNVKE 160 (199)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHH-----HTCEEEECBTTTTBSHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHH-----hCCeEEEEecCCCCCHHH
Confidence 9999998888888777765544211 24689999999999976322 2222221111 123799999999999999
Q ss_pred HHHHHHHHhhhc
Q 030429 165 VIDWLIKHSKTA 176 (177)
Q Consensus 165 l~~~l~~~~~~~ 176 (177)
++++|.+.+.++
T Consensus 161 l~~~l~~~~~~~ 172 (199)
T 2gf0_A 161 LFQELLTLETRR 172 (199)
T ss_dssp HHHHHHHHCSSS
T ss_pred HHHHHHHHHhhh
Confidence 999999987543
No 88
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.97 E-value=1.9e-31 Score=180.62 Aligned_cols=160 Identities=22% Similarity=0.330 Sum_probs=111.4
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE---EEEeCCEEEEEEecCCchhhHHhHHHHhcCCCE
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSA 83 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (177)
+..++.+||+++|++|+|||||++++.++.+...+.+|.+.... ......+.+.+||+||++++...+..+++.+|+
T Consensus 3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 82 (182)
T 3bwd_D 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (182)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSE
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCE
Confidence 34567899999999999999999999988877666666543222 123345778899999999999888899999999
Q ss_pred EEEEEeCCCCCCHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCcccccC------------HH---HHHHHhCcccccCC
Q 030429 84 ILYVVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEALS------------KQ---ALVDQLGLESITDR 147 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~------------~~---~~~~~~~~~~~~~~ 147 (177)
+++|+|++++.+++... .|+..+.... .+.|+++|+||+|+.+... .+ ++.+.++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------- 153 (182)
T 3bwd_D 83 FILAFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIG------- 153 (182)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHT-------
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcC-------
Confidence 99999999999999887 5666554432 3789999999999865422 11 1122221
Q ss_pred ceeEEEeeecCCCChHHHHHHHHHHhhh
Q 030429 148 EVCCYMISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 148 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
..+++++||++|.|++++|++|.+.+.+
T Consensus 154 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 154 APAYIECSSKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 1379999999999999999999987653
No 89
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=3.1e-30 Score=176.54 Aligned_cols=161 Identities=19% Similarity=0.209 Sum_probs=124.6
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
..++.+||+++|++|||||||++++.++.+...+.+|.+.... .+..++ +.+.+||+||++++...+..+++.+|++
T Consensus 14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 3457799999999999999999999988887777777664442 344444 8899999999999998888999999999
Q ss_pred EEEEeCCCCCCHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCcccccC--------------HHHHHHHhCcccccCCce
Q 030429 85 LYVVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEALS--------------KQALVDQLGLESITDREV 149 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--------------~~~~~~~~~~~~~~~~~~ 149 (177)
++|+|++++.++.... .|+..+.... .+.|+++|+||+|+.+... .++..+.... ....
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~ 167 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEYA--PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKE----IGAC 167 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHH----HTCS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHH----cCCc
Confidence 9999999999999887 5666665432 3789999999999976421 1111111100 0112
Q ss_pred eEEEeeecCCCChHHHHHHHHHHhh
Q 030429 150 CCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 150 ~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
+++++||++|.|++++|++|.+.+.
T Consensus 168 ~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 168 CYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 6999999999999999999998765
No 90
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.97 E-value=7.8e-31 Score=178.22 Aligned_cols=161 Identities=16% Similarity=0.195 Sum_probs=122.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEE--eCCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
.+..+||+++|++|||||||++++.++.+...+.+|.+.... .+. ...+.+.+||+||++.+...+..+++.+|+++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 456799999999999999999999998887777777664443 233 34578999999999999888888999999999
Q ss_pred EEEeCCCCCCHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCccccc--------------CHHHHHHHhCcccccCCcee
Q 030429 86 YVVDAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEAL--------------SKQALVDQLGLESITDREVC 150 (177)
Q Consensus 86 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~~~~ 150 (177)
+|+|++++.++... ..|+..+.... ++.|+++|+||+|+.+.. ..++..+.... ....+
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~ 157 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQ----IGAAT 157 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH----HTCSE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHH----cCCcE
Confidence 99999999999888 56665554432 478999999999997521 11111111100 01247
Q ss_pred EEEeeec-CCCChHHHHHHHHHHhhh
Q 030429 151 CYMISCK-DSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 151 ~~~~Sa~-~~~~i~~l~~~l~~~~~~ 175 (177)
++++||+ ++.|++++|+.+.+.+.+
T Consensus 158 ~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 158 YIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp EEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred EEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 9999999 689999999999998764
No 91
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.97 E-value=1.9e-30 Score=178.55 Aligned_cols=163 Identities=21% Similarity=0.222 Sum_probs=116.4
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCE
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSA 83 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (177)
...+..+||+++|.+|||||||++++.++.+...+.+|.+.... .+..++ +.+.+|||||++++...+..++..+|+
T Consensus 15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 34567899999999999999999999988877777777664443 344444 678899999999998888889999999
Q ss_pred EEEEEeCCCCCCHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCccccc--------------CHHHHHHHhCcccccCCc
Q 030429 84 ILYVVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEAL--------------SKQALVDQLGLESITDRE 148 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~~ 148 (177)
+++|+|++++.++.... .|+..+.... .+.|+++|+||+|+.+.. ..++..+.... ...
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~ 168 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEE----IKA 168 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH----HTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHh----cCC
Confidence 99999999999999886 5666665432 378999999999997531 11111111100 012
Q ss_pred eeEEEeeecCCCChHHHHHHHHHHhhh
Q 030429 149 VCCYMISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 149 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
.+++++||++|.|++++|++|.+.+.+
T Consensus 169 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 169 ASYIECSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 379999999999999999999988754
No 92
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.97 E-value=1.3e-31 Score=187.04 Aligned_cols=162 Identities=22% Similarity=0.392 Sum_probs=128.6
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEE----eCCEEEEEEecCCchhhHHhHHHHhcCCCE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQRRFRTMWERYCRGVSA 83 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (177)
.....+||+++|.+|||||||+++++.+.+...+.++.+.+..... ...+.+.+|||||++.+...+..+++.+|+
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 90 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC 90 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence 4566799999999999999999998777766666677665554432 345789999999999999888999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 84 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
+++|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+.....+.. ......+++++++||++|.|++
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~gi~ 163 (221)
T 3gj0_A 91 AIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSI-----VFHRKKNLQYYDISAKSNYNFE 163 (221)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCGGGC-----CHHHHHTCEEEECBGGGTBTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccHHHH-----HHHHHcCCEEEEEeCCCCCCHH
Confidence 999999999999999988888887653 378999999999997643221111 1111123579999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030429 164 AVIDWLIKHSKTA 176 (177)
Q Consensus 164 ~l~~~l~~~~~~~ 176 (177)
++|++|.+.+.+.
T Consensus 164 ~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 164 KPFLWLARKLIGD 176 (221)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999987653
No 93
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.97 E-value=4.3e-30 Score=176.93 Aligned_cols=164 Identities=19% Similarity=0.249 Sum_probs=122.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM-RKVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
...+||+++|.+|||||||++++.++.+...+.++.+... ..+..+ .+.+.+||+||++++...+..++..+|++++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence 4578999999999999999999999888777767666443 223444 4689999999999998888889999999999
Q ss_pred EEeCCCCCCHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCccc---------c-cCCceeEEEee
Q 030429 87 VVDAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES---------I-TDREVCCYMIS 155 (177)
Q Consensus 87 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~---------~-~~~~~~~~~~S 155 (177)
|+|++++.++... ..|+..+.... .+.|+++|+||+|+.+.....+..+.+.... . .....+++++|
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (201)
T 2gco_A 103 CFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS 180 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence 9999999899888 45555443322 4789999999999976532221111110000 0 01122799999
Q ss_pred ecCCCChHHHHHHHHHHhhh
Q 030429 156 CKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 156 a~~~~~i~~l~~~l~~~~~~ 175 (177)
|++|.|+++++++|.+.+.+
T Consensus 181 A~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 181 AKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999988753
No 94
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.97 E-value=6.7e-31 Score=178.61 Aligned_cols=163 Identities=17% Similarity=0.296 Sum_probs=115.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCccceeEEEEE-------eCCEEEEEEecCCchhhHHhHHHHhcCCC
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATG--GYSEDMIPTVGFNMRKVT-------KGNVTIKLWDLGGQRRFRTMWERYCRGVS 82 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~--~~~~~~~~t~~~~~~~~~-------~~~~~~~~~D~~g~~~~~~~~~~~~~~~d 82 (177)
.+||+++|++|||||||++++++. .+...+.+|.+....... ...+.+.+|||+|++++......++.+++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 579999999999999999999974 344555677776655433 24678999999999999888888899999
Q ss_pred EEEEEEeCCCC-CCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHH----HHHHHhCcccccCCceeEEEeeec
Q 030429 83 AILYVVDAADR-DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ----ALVDQLGLESITDREVCCYMISCK 157 (177)
Q Consensus 83 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (177)
++++|+|++++ .++..+..|+..+.... .+.|+++|+||+|+.+..... +..+.+..........+++++||+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence 99999999997 57888888888775532 368999999999997643221 112222211111111248999999
Q ss_pred CCC-ChHHHHHHHHHHhhhc
Q 030429 158 DSI-NIDAVIDWLIKHSKTA 176 (177)
Q Consensus 158 ~~~-~i~~l~~~l~~~~~~~ 176 (177)
++. +++++++.|.+.+.+.
T Consensus 160 ~~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 160 EESDALAKLRKTIINESLNF 179 (184)
T ss_dssp SCCHHHHHHHHHHHHHHHCC
T ss_pred cCchhHHHHHHHHHHHHhcc
Confidence 997 9999999999887654
No 95
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2e-30 Score=179.62 Aligned_cols=162 Identities=20% Similarity=0.170 Sum_probs=116.0
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCcccee--EEEEEeCC--EEEEEEecCCchh-hHHhHHHHhcC
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGY--SEDMIPTVGFN--MRKVTKGN--VTIKLWDLGGQRR-FRTMWERYCRG 80 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~-~~~~~~~~~~~ 80 (177)
.....+||+++|.+|||||||+++|++... ...+. +.+.+ ...+..++ +.+.+|||+|+.. +......+++.
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~-~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~ 111 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCE-VLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV 111 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCC-ccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence 345569999999999999999999985432 33222 23322 23344443 5678999999877 45555667888
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecC
Q 030429 81 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKD 158 (177)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (177)
+|++++|||++++.+|+....|+..+.......++|+++|+||+|+.+... .++.. .+.. ..++++++|||++
T Consensus 112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~-~~a~----~~~~~~~e~SAk~ 186 (211)
T 2g3y_A 112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGR-ACAV----VFDCKFIETSAAV 186 (211)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHH-HHHH----HHTCEEEECBTTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHH-HHHH----HcCCEEEEEeCCC
Confidence 999999999999999999998887775543334789999999999975322 22211 1110 1124799999999
Q ss_pred CCChHHHHHHHHHHhhh
Q 030429 159 SINIDAVIDWLIKHSKT 175 (177)
Q Consensus 159 ~~~i~~l~~~l~~~~~~ 175 (177)
|.|++++|++|.+.+..
T Consensus 187 g~~v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 187 QHNVKELFEGIVRQVRL 203 (211)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999998754
No 96
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.97 E-value=1.4e-30 Score=179.94 Aligned_cols=161 Identities=16% Similarity=0.195 Sum_probs=123.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEE--eCCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
.+..+||+++|++|||||||+++|.++.+...+.+|.+.... .+. ...+.+.+|||||++.+...+..++..+|+++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 456799999999999999999999998887777777665443 233 33588999999999999888888999999999
Q ss_pred EEEeCCCCCCHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCccccc--------------CHHHHHHHhCcccccCCcee
Q 030429 86 YVVDAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEAL--------------SKQALVDQLGLESITDREVC 150 (177)
Q Consensus 86 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~~~~ 150 (177)
+|+|++++.++..+ ..|+..+.... .+.|+++|+||+|+.+.. ..++..+.... ....+
T Consensus 105 lv~D~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~ 178 (205)
T 1gwn_A 105 ICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQ----IGAAT 178 (205)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH----HTCSE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHH----cCCCE
Confidence 99999999999988 56666664432 478999999999997421 11111111100 01247
Q ss_pred EEEeeec-CCCChHHHHHHHHHHhhh
Q 030429 151 CYMISCK-DSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 151 ~~~~Sa~-~~~~i~~l~~~l~~~~~~ 175 (177)
+++|||+ ++.|++++|+.|.+.+.+
T Consensus 179 ~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 179 YIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp EEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 9999999 689999999999998765
No 97
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.97 E-value=1.7e-29 Score=170.33 Aligned_cols=162 Identities=20% Similarity=0.296 Sum_probs=121.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCc--cceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPT--VGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
.++.++|+++|++|||||||++++.++.+.....++ .......+..++..+.+|||||++++...+..++..+|++++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 84 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVIL 84 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEE
Confidence 457899999999999999999999988776554443 334445567788899999999999998887788899999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccc-c-C--CceeEEEeeecCCCCh
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI-T-D--REVCCYMISCKDSINI 162 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~-~--~~~~~~~~Sa~~~~~i 162 (177)
|+|++++..... ...+..+.. .+.|+++|+||+|+.+. ..++..+.+..... . . ...+++++||++|.|+
T Consensus 85 v~d~~~~~~~~~-~~~l~~~~~----~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 158 (178)
T 2lkc_A 85 VVAADDGVMPQT-VEAINHAKA----ANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGL 158 (178)
T ss_dssp EEETTCCCCHHH-HHHHHHHGG----GSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHH
T ss_pred EEECCCCCcHHH-HHHHHHHHh----CCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCH
Confidence 999988654333 233333322 36899999999999764 33344433322111 1 1 2368999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030429 163 DAVIDWLIKHSKTA 176 (177)
Q Consensus 163 ~~l~~~l~~~~~~~ 176 (177)
++++++|.+.+...
T Consensus 159 ~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 159 DHLLEMILLVSEME 172 (178)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhh
Confidence 99999999987654
No 98
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.96 E-value=1.3e-31 Score=184.27 Aligned_cols=159 Identities=28% Similarity=0.467 Sum_probs=119.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccc--eeEEEEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
.+..+||+++|.+|||||||+++|.++.+.....++.+ .....+..++ +.+.+|||||++.+...+..+++.+|++
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 109 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 109 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence 35679999999999999999999998777666555544 3344455555 7899999999999988888899999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc-----CHHHHHHHhCcccccCCceeEEEeeecCC
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL-----SKQALVDQLGLESITDREVCCYMISCKDS 159 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 159 (177)
++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.. ..+++.+.+ +++++++||++|
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~--------~~~~~~vSA~~g 180 (199)
T 3l0i_B 110 IVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL--------GIPFLETSAKNA 180 (199)
T ss_dssp EECC-CCCSHHHHHHHHHHHHHHSCC--CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTT--------TCCBCCCCC---
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-cCCCCEEEEEECccCCccccCCHHHHHHHHHHc--------CCeEEEEECCCC
Confidence 99999999999999998888875543 3578999999999986542 222333332 346899999999
Q ss_pred CChHHHHHHHHHHhhhc
Q 030429 160 INIDAVIDWLIKHSKTA 176 (177)
Q Consensus 160 ~~i~~l~~~l~~~~~~~ 176 (177)
.|++++|++|.+.+.++
T Consensus 181 ~gv~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 181 TNVEQSFMTMAAEIKKR 197 (199)
T ss_dssp HHHHHHHHHHTTTTTTT
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999887654
No 99
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.96 E-value=5.8e-30 Score=175.61 Aligned_cols=163 Identities=21% Similarity=0.310 Sum_probs=112.2
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcccee--EEE--EE-eCCEEEEEEecCCchhhHHhH---HHHh
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN--MRK--VT-KGNVTIKLWDLGGQRRFRTMW---ERYC 78 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~--~~-~~~~~~~~~D~~g~~~~~~~~---~~~~ 78 (177)
...++.+||+++|.+|||||||++++.+. +........+.. ... +. ...+.+++||+||+++|.... ..++
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 93 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF 93 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSC-CCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHH
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhc-CCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccc
Confidence 34567899999999999999999988753 332222212211 122 22 456899999999999987766 7889
Q ss_pred cCCCEEEEEEeCCCC--CCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH----HHH----HHHhCcccccCCc
Q 030429 79 RGVSAILYVVDAADR--DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK----QAL----VDQLGLESITDRE 148 (177)
Q Consensus 79 ~~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~----~~~----~~~~~~~~~~~~~ 148 (177)
+++|++++|+|++++ +++.....|+..+... ..+.|+++|+||+|+.+.... ..+ .+.+........+
T Consensus 94 ~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 171 (196)
T 3llu_A 94 RGTGALIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLH 171 (196)
T ss_dssp HTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSC
T ss_pred ccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCC
Confidence 999999999999997 4555556666665322 247899999999998763211 112 1222221122456
Q ss_pred eeEEEeeecCCCChHHHHHHHHHHh
Q 030429 149 VCCYMISCKDSINIDAVIDWLIKHS 173 (177)
Q Consensus 149 ~~~~~~Sa~~~~~i~~l~~~l~~~~ 173 (177)
+++++|||++ .|++++|+.|.+.+
T Consensus 172 ~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 172 LSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred cceEEEEech-hhHHHHHHHHHHHh
Confidence 7899999999 99999999999865
No 100
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.96 E-value=1.4e-28 Score=168.37 Aligned_cols=162 Identities=20% Similarity=0.173 Sum_probs=109.7
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEeCCEEEEEEecCC----------chhhHHhH
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGNVTIKLWDLGG----------QRRFRTMW 74 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~g----------~~~~~~~~ 74 (177)
+.....++|+++|++|||||||++++++..+.....++.+.+. .....+ ..+.+||||| ++.+...+
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-DELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-TTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC-CcEEEEECCCCCccccCHHHHHHHHHHH
Confidence 3445679999999999999999999998765444444333211 122222 3689999999 77777777
Q ss_pred HHHhcCC---CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeE
Q 030429 75 ERYCRGV---SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCC 151 (177)
Q Consensus 75 ~~~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (177)
..++..+ |++++|+|++++.+..... +...+.. .+.|+++|+||+|+.+........+.+..........++
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDEL 171 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEE
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCce
Confidence 7777666 9999999999987776542 1122222 468999999999998765443333332211112345689
Q ss_pred EEeeecCCCChHHHHHHHHHHhh
Q 030429 152 YMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 152 ~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
+++||++|.|+++++++|.+.+.
T Consensus 172 ~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 172 ILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHT
T ss_pred EEEEccCCCCHHHHHHHHHHHhc
Confidence 99999999999999999998775
No 101
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.96 E-value=3.4e-28 Score=162.49 Aligned_cols=148 Identities=23% Similarity=0.260 Sum_probs=109.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEEeCCEEEEEEecCCchhhH------HhHHHHhc--CC
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQRRFR------TMWERYCR--GV 81 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~--~~ 81 (177)
.++|+++|++|||||||++++.+..+.....+ +.......+..++..+.+|||||+.++. .....++. ++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 82 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKP 82 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCC
Confidence 57999999999999999999997665433333 3334445566778999999999987763 33345554 89
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc----CHHHHHHHhCcccccCCceeEEEeeec
Q 030429 82 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL----SKQALVDQLGLESITDREVCCYMISCK 157 (177)
Q Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (177)
|++++|+|+++ ++....|+..+... +.|+++|+||+|+.+.. +.+++.+.++ ++++++||+
T Consensus 83 ~~~i~v~D~~~---~~~~~~~~~~~~~~----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~SA~ 147 (165)
T 2wji_A 83 DLVVNIVDATA---LERNLYLTLQLMEM----GANLLLALNKMDLAKSLGIEIDVDKLEKILG--------VKVVPLSAA 147 (165)
T ss_dssp SEEEEEEETTC---HHHHHHHHHHHHHT----TCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBGG
T ss_pred CEEEEEecCCc---hhHhHHHHHHHHhc----CCCEEEEEEchHhccccChhhHHHHHHHHhC--------CCEEEEEcC
Confidence 99999999977 34445566665442 68999999999986432 2334444443 369999999
Q ss_pred CCCChHHHHHHHHHHhh
Q 030429 158 DSINIDAVIDWLIKHSK 174 (177)
Q Consensus 158 ~~~~i~~l~~~l~~~~~ 174 (177)
+|.|++++|++|.+.++
T Consensus 148 ~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 148 KKMGIEELKKAISIAVK 164 (165)
T ss_dssp GTBSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 99999999999998764
No 102
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.96 E-value=1.3e-28 Score=172.56 Aligned_cols=162 Identities=17% Similarity=0.156 Sum_probs=111.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEEeCCEEEEEEecCCc------hhh---HHhHHHHh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDM--IPTVGFNMRKVTKGNVTIKLWDLGGQ------RRF---RTMWERYC 78 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~D~~g~------~~~---~~~~~~~~ 78 (177)
.+.++|+++|.+|||||||+++|++..+.... ..+..........++..+.+|||||+ +.. ...+..++
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 106 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALA 106 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhh
Confidence 46799999999999999999999977654221 22444555556667899999999998 331 12234457
Q ss_pred cCCCEEEEEEeCCCCCCHHH--HHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHH----HHHHhCcccccCCceeEE
Q 030429 79 RGVSAILYVVDAADRDSVPI--ARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQA----LVDQLGLESITDREVCCY 152 (177)
Q Consensus 79 ~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 152 (177)
..+|++++|+|++++.++.. ...++..+... ..+.|+++|+||+|+.+...... ..+.+.. ......+++
T Consensus 107 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 182 (228)
T 2qu8_A 107 HINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILD--NVKNPIKFS 182 (228)
T ss_dssp TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHH--HCCSCEEEE
T ss_pred ccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHH--hcCCCceEE
Confidence 88999999999999888752 23455555332 24789999999999976433211 1111111 011225899
Q ss_pred EeeecCCCChHHHHHHHHHHhhh
Q 030429 153 MISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 153 ~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
++||++|.|++++|++|.+.+.+
T Consensus 183 ~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 183 SFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998764
No 103
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.93 E-value=2e-31 Score=183.85 Aligned_cols=165 Identities=21% Similarity=0.257 Sum_probs=121.5
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE---EEEeCCEEEEEEecCCchhhHHhHHHHhcCCCE
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSA 83 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (177)
+..++.+||+++|.+|||||||++++.++.+.....++.+.... ......+.+.+|||||++++...+..+++.+|+
T Consensus 25 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 3th5_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV 104 (204)
Confidence 45578899999999999999999999987776665555543222 123445778899999999999988999999999
Q ss_pred EEEEEeCCCCCCHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHH---------HHHhCcccccCCce-eEE
Q 030429 84 ILYVVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEALSKQAL---------VDQLGLESITDREV-CCY 152 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~---------~~~~~~~~~~~~~~-~~~ 152 (177)
+++|+|++++.++.... .|+..+.... .+.|+++|+||+|+.+.....+. ............+. +++
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 182 (204)
T 3th5_A 105 FLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL 182 (204)
Confidence 99999999999999887 5555443322 37899999999999764321111 00111111112233 789
Q ss_pred EeeecCCCChHHHHHHHHHHh
Q 030429 153 MISCKDSINIDAVIDWLIKHS 173 (177)
Q Consensus 153 ~~Sa~~~~~i~~l~~~l~~~~ 173 (177)
++||++|.|++++|++|.+.+
T Consensus 183 ~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 183 ECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999999999998764
No 104
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.96 E-value=2e-28 Score=164.77 Aligned_cols=153 Identities=18% Similarity=0.211 Sum_probs=110.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEeCCEEEEEEecCCchhhHH--------hHHHHh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT--------MWERYC 78 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~ 78 (177)
+...+|+++|++|||||||++++.+.... .....+.......+..++..+.+|||||+.++.. ....++
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 45689999999999999999999976532 1222344445556777888899999999764311 112357
Q ss_pred cCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecC
Q 030429 79 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKD 158 (177)
Q Consensus 79 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (177)
+.+|++++|+|++++.++.. ..|+..+.... ..++|+++|+||+|+.+... ........+++++||++
T Consensus 82 ~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~SA~~ 149 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVDP-AEIWPEFIARL-PAKLPITVVRNKADITGETL----------GMSEVNGHALIRLSART 149 (172)
T ss_dssp HTCSEEEEEEETTTCCCCSH-HHHCHHHHHHS-CTTCCEEEEEECHHHHCCCC----------EEEEETTEEEEECCTTT
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHHhc-ccCCCEEEEEECccCCcchh----------hhhhccCCceEEEeCCC
Confidence 89999999999999888763 45555554432 24689999999999854311 11112346899999999
Q ss_pred CCChHHHHHHHHHHhh
Q 030429 159 SINIDAVIDWLIKHSK 174 (177)
Q Consensus 159 ~~~i~~l~~~l~~~~~ 174 (177)
|.|++++|++|.+.+.
T Consensus 150 g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 150 GEGVDVLRNHLKQSMG 165 (172)
T ss_dssp CTTHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHhh
Confidence 9999999999998764
No 105
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.96 E-value=1.4e-29 Score=173.31 Aligned_cols=159 Identities=20% Similarity=0.187 Sum_probs=111.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCcccee--EEEEEeCC--EEEEEEecCCchh-hHHhHHHHhcCCC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGG--YSEDMIPTVGFN--MRKVTKGN--VTIKLWDLGGQRR-FRTMWERYCRGVS 82 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~-~~~~~~~~~~~~d 82 (177)
...+||+++|.+|||||||+++|++.. +...+. +.+.+ ...+..++ +.+.+|||+|+.. +......+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXE-VLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----G-GGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcccc-ccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 456899999999999999999998532 333222 23322 23344444 5678999999766 3444556777899
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCC
Q 030429 83 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSI 160 (177)
Q Consensus 83 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (177)
++++|||++++.+++....|+..+.......+.|+++|+||+|+.+... .++.. .+. ...++++++|||++|.
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~-~~a----~~~~~~~~e~SA~~g~ 157 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGR-AXA----VVFDXKFIETSAAVQH 157 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHH-HHH----HHTTCEEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHH-HHH----HHhCCceEEeccccCC
Confidence 9999999999999999988887765533335789999999999865322 12111 111 0112479999999999
Q ss_pred ChHHHHHHHHHHhh
Q 030429 161 NIDAVIDWLIKHSK 174 (177)
Q Consensus 161 ~i~~l~~~l~~~~~ 174 (177)
|++++|+++.+.+.
T Consensus 158 ~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 158 NVKELFEGIVRQVR 171 (192)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998774
No 106
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.96 E-value=5.2e-28 Score=165.22 Aligned_cols=163 Identities=18% Similarity=0.162 Sum_probs=110.6
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEeCCEEEEEEecCC----------chhhHHhHH
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKGNVTIKLWDLGG----------QRRFRTMWE 75 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~D~~g----------~~~~~~~~~ 75 (177)
......++|+++|++|||||||++++++.... ...++.+.+.. .....+..+.+||||| +..+...+.
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 96 (195)
T 3pqc_A 18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVE 96 (195)
T ss_dssp CCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHH
Confidence 34456789999999999999999999977632 22222221111 1122244688999999 666777666
Q ss_pred HHhcCC---CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEE
Q 030429 76 RYCRGV---SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCY 152 (177)
Q Consensus 76 ~~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (177)
.++..+ |++++|+|+++..+.... .+...+.. .+.|+++|+||+|+.+....+...+............+++
T Consensus 97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (195)
T 3pqc_A 97 DYFKNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKS---LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTII 171 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEE
T ss_pred HHHhcCcCceEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceE
Confidence 666554 999999999876544332 11112121 2689999999999987655444444433222222346899
Q ss_pred EeeecCCCChHHHHHHHHHHhhh
Q 030429 153 MISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 153 ~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
++||++|.|++++|++|.+.+.+
T Consensus 172 ~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 172 PTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHC-
T ss_pred EEecCCCCCHHHHHHHHHHHhhc
Confidence 99999999999999999998865
No 107
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.96 E-value=7.6e-28 Score=159.71 Aligned_cols=149 Identities=17% Similarity=0.205 Sum_probs=106.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEeCCEEEEEEecCCchh-------hHHhHHHHhcCCC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR-------FRTMWERYCRGVS 82 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~d 82 (177)
.||+++|++|+|||||++++.+..+. .....+.......+..++..+.+|||||+.. +...+..++..+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 58999999999999999999977643 1222233455556677888999999999876 4555667889999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 83 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 83 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
++++|+|++++.+.. ..++...... .+.|+++|+||+|+.+.. ++ .+.+ ......+++++||++|.|+
T Consensus 82 ~~i~v~d~~~~~~~~--~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~--~~-~~~~----~~~~~~~~~~~Sa~~~~gv 149 (161)
T 2dyk_A 82 VVLFAVDGRAELTQA--DYEVAEYLRR---KGKPVILVATKVDDPKHE--LY-LGPL----YGLGFGDPIPTSSEHARGL 149 (161)
T ss_dssp EEEEEEESSSCCCHH--HHHHHHHHHH---HTCCEEEEEECCCSGGGG--GG-CGGG----GGGSSCSCEECBTTTTBSH
T ss_pred EEEEEEECCCcccHh--HHHHHHHHHh---cCCCEEEEEECcccccch--Hh-HHHH----HhCCCCCeEEEecccCCCh
Confidence 999999998864433 2334443333 468999999999997652 11 1111 1111126899999999999
Q ss_pred HHHHHHHHHHh
Q 030429 163 DAVIDWLIKHS 173 (177)
Q Consensus 163 ~~l~~~l~~~~ 173 (177)
+++|++|.+.+
T Consensus 150 ~~l~~~l~~~l 160 (161)
T 2dyk_A 150 EELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999998865
No 108
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.96 E-value=3.5e-28 Score=177.32 Aligned_cols=163 Identities=18% Similarity=0.209 Sum_probs=120.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEe-CCEEEEEEecCCchhh-----HHhHHHHhcC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTK-GNVTIKLWDLGGQRRF-----RTMWERYCRG 80 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~-----~~~~~~~~~~ 80 (177)
+..+||+++|.+|||||||+++++++... ..+.+|.+.....+.. +++.+.+|||||++++ ...+..++++
T Consensus 1 ~~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (307)
T 3r7w_A 1 PLGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQM 80 (307)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhcc
Confidence 35689999999999999999999876322 2466788887777764 6799999999999988 5677788899
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHcC-CCCCCCcEEEEeeCCCcccccCHH----HHHHHhCcccccCC--ceeEEE
Q 030429 81 VSAILYVVDAADRDSVPIARSELHELLMK-PSLSGIPLLVLGNKIDKSEALSKQ----ALVDQLGLESITDR--EVCCYM 153 (177)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~iiv~nK~D~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~ 153 (177)
+|++++|+|++++.+++++..|...+... ...++.|+++|+||+|+.+..... ...+.......... .+++++
T Consensus 81 ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~ 160 (307)
T 3r7w_A 81 VQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFP 160 (307)
T ss_dssp CSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEE
T ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 99999999999999999886654333221 012479999999999997632222 11111111111111 368999
Q ss_pred eeecCCCChHHHHHHHHHHh
Q 030429 154 ISCKDSINIDAVIDWLIKHS 173 (177)
Q Consensus 154 ~Sa~~~~~i~~l~~~l~~~~ 173 (177)
+||++ .++.++|..+.+.+
T Consensus 161 tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 161 TSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp CCTTS-SHHHHHHHHHHHTT
T ss_pred eeecC-ChHHHHHHHHHHHH
Confidence 99999 88999999888754
No 109
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.96 E-value=6.1e-29 Score=169.32 Aligned_cols=161 Identities=18% Similarity=0.208 Sum_probs=113.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCC-----------chhhHHhHHHHhcC-
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG-----------QRRFRTMWERYCRG- 80 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~~~~~~- 80 (177)
+||+++|++|||||||++++.++.+.....++.......+... .+.+||||| ++.+...+..++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 79 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 5899999999999999999998887766666555555555444 688999999 67777777777766
Q ss_pred CCEEEEEEeCCCCCCHHHH-HHHHHH--------HHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCce
Q 030429 81 VSAILYVVDAADRDSVPIA-RSELHE--------LLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREV 149 (177)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~ 149 (177)
++++++|+++.|..++... ..|... +.......+.|+++|+||+|+.+.. ..+++.+.++... .....
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~ 158 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPL-SEIDK 158 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCG-GGHHH
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhh-hccCC
Confidence 6666666666666677766 333221 1111112478999999999997643 2334444444311 00123
Q ss_pred eEEEeeecCCCChHHHHHHHHHHhhhc
Q 030429 150 CCYMISCKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 150 ~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 176 (177)
+++++||++|.|++++|++|.+.+.+.
T Consensus 159 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 159 VFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp HEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred cEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 689999999999999999999988754
No 110
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.95 E-value=1.5e-28 Score=178.41 Aligned_cols=158 Identities=20% Similarity=0.263 Sum_probs=114.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCccceeEEEEEeCCEEEEEEecCCchhhHH---hHHHHhcCCCEEEEE
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT---MWERYCRGVSAILYV 87 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~d~~i~v 87 (177)
||+++|..|||||||++++.++.... ...+|.+.....+. ..+.+++|||+|+++|+. ....++++++++++|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV 79 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV 79 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence 68999999999999999987554332 25678887777663 458999999999999964 457899999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcC--CCCCCCcEEEEeeCCCcccccCH----HHHHHHhCccccc----CCceeEEEeeec
Q 030429 88 VDAADRDSVPIARSELHELLMK--PSLSGIPLLVLGNKIDKSEALSK----QALVDQLGLESIT----DREVCCYMISCK 157 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~iiv~nK~D~~~~~~~----~~~~~~~~~~~~~----~~~~~~~~~Sa~ 157 (177)
||++++ +.+...||..++.. ...++.|+++++||+|+.+.... +++....+..... ..+++|++|||+
T Consensus 80 ~Ditd~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAk 157 (331)
T 3r7w_B 80 IDSQDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF 157 (331)
T ss_dssp CCCSSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSS
T ss_pred EECCch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccC
Confidence 999987 44444454433221 11257999999999999765321 2233322222222 246899999999
Q ss_pred CCCChHHHHHHHHHHhhh
Q 030429 158 DSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 158 ~~~~i~~l~~~l~~~~~~ 175 (177)
+ .+|.+.|..+++.+..
T Consensus 158 d-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 158 D-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp S-SHHHHHHHHHHTTSST
T ss_pred C-CcHHHHHHHHHHHHHh
Confidence 8 5899999999887643
No 111
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.95 E-value=3.8e-27 Score=171.86 Aligned_cols=161 Identities=19% Similarity=0.140 Sum_probs=120.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCccceeEEEEEeC-CEEEEEEecCCchhh----------HHhH
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSE---DMIPTVGFNMRKVTKG-NVTIKLWDLGGQRRF----------RTMW 74 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~----------~~~~ 74 (177)
.+..-.|+++|.+|||||||+|+|++..+.. ....|..........+ +.++.+|||||+.++ ....
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~ 86 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIA 86 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHH
Confidence 4566789999999999999999999877542 2233444445556677 899999999998443 3555
Q ss_pred HHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc-cccCHHHHHHHhCcccccCCceeEEE
Q 030429 75 ERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS-EALSKQALVDQLGLESITDREVCCYM 153 (177)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (177)
..++..+|++++|+|++++.+......|+..+.. .+.|+++|+||+|+. +.....+..+.+.... ....++++
T Consensus 87 ~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~--~~~~~i~~ 160 (308)
T 3iev_A 87 KQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH--PELTEIVP 160 (308)
T ss_dssp HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC--TTCCCEEE
T ss_pred HHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhc--cCCCeEEE
Confidence 6678899999999999998888877666666544 368999999999997 4433333333332211 12347999
Q ss_pred eeecCCCChHHHHHHHHHHhhh
Q 030429 154 ISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 154 ~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
+||++|.|++++++.|.+.+.+
T Consensus 161 vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 161 ISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp CBTTTTBSHHHHHHHHHHHSCB
T ss_pred EeCCCCCCHHHHHHHHHHhCcc
Confidence 9999999999999999988754
No 112
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.95 E-value=2e-27 Score=174.81 Aligned_cols=166 Identities=19% Similarity=0.233 Sum_probs=123.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-EEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
.+..++|+++|.+|+|||||++++.++.+...+.+|.+..... +..++ +.+.+|||||++.+...+..++..+|+++
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 3567999999999999999999999888877777766544332 34444 56679999999999988888999999999
Q ss_pred EEEeCCCCCCHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCccc---------cc-CCceeEEEe
Q 030429 86 YVVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES---------IT-DREVCCYMI 154 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~ 154 (177)
+|+|++++.++.... .|+..+.... .++|+++|+||+|+.+.....+......... .. ....+++++
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 309 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 309 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEe
Confidence 999999999998886 4555554432 3789999999999865422111111110000 00 112379999
Q ss_pred eecCCCChHHHHHHHHHHhhhc
Q 030429 155 SCKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 155 Sa~~~~~i~~l~~~l~~~~~~~ 176 (177)
||++|.|++++|+.|.+.+.+.
T Consensus 310 Sa~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 310 SALTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC-
T ss_pred cCCCCcCHHHHHHHHHHHHhcC
Confidence 9999999999999999987654
No 113
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.95 E-value=1.7e-27 Score=166.24 Aligned_cols=163 Identities=16% Similarity=0.162 Sum_probs=110.7
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCC----CCCccceeEEEEE-eCCEEEEEEecCC----------chhhHH
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSED----MIPTVGFNMRKVT-KGNVTIKLWDLGG----------QRRFRT 72 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~~~~-~~~~~~~~~D~~g----------~~~~~~ 72 (177)
.....++|+++|.+|||||||++++++...... ...|......... .++..+.+||||| ++.+..
T Consensus 25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 104 (223)
T 4dhe_A 25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ 104 (223)
T ss_dssp CCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence 345678999999999999999999997752111 1223334444444 4568899999999 344555
Q ss_pred hHHHHhcC---CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCccccc----
Q 030429 73 MWERYCRG---VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESIT---- 145 (177)
Q Consensus 73 ~~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~---- 145 (177)
....++.. +|++++|+|++++.+. ....++..+ .. .+.|+++|+||+|+.+.....+..+.+......
T Consensus 105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l-~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 179 (223)
T 4dhe_A 105 LLSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWF-AP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDA 179 (223)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHH-GG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHH-Hh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhc
Confidence 56566554 7889999999875442 223333333 32 468999999999998754432222222111111
Q ss_pred --CCceeEEEeeecCCCChHHHHHHHHHHhhh
Q 030429 146 --DREVCCYMISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 146 --~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
....+++++||++|.|+++++++|.+.+..
T Consensus 180 ~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 180 GYAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp TCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred ccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 245689999999999999999999998754
No 114
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.95 E-value=9.4e-27 Score=169.09 Aligned_cols=155 Identities=19% Similarity=0.183 Sum_probs=112.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCC--C-CCCccceeEEEEEeCCEEEEEEecCCchh--------hHHhHHHHhc
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSE--D-MIPTVGFNMRKVTKGNVTIKLWDLGGQRR--------FRTMWERYCR 79 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~--~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~ 79 (177)
+..+|+++|.+|+|||||+|++++..+.. . ...|..........++.++.+|||||..+ +......+++
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~ 85 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA 85 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHh
Confidence 45679999999999999999999877642 1 22233333334556789999999999765 4555667889
Q ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC-HHHHHHHhCcccccCCceeEEEeeecC
Q 030429 80 GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKD 158 (177)
Q Consensus 80 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (177)
.+|++++|+|++++.+.. ..++...+.... .+.|+++|+||+|+.+... ..+..+.+ ....+++++||++
T Consensus 86 ~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~------~~~~~~~~iSA~~ 156 (301)
T 1wf3_A 86 DVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEEAMKAYHEL------LPEAEPRMLSALD 156 (301)
T ss_dssp SCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHHHHHHHHT------STTSEEEECCTTC
T ss_pred cCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHHHHHHHHHh------cCcCcEEEEeCCC
Confidence 999999999998875443 345444333321 3689999999999976433 22333333 2334789999999
Q ss_pred CCChHHHHHHHHHHhh
Q 030429 159 SINIDAVIDWLIKHSK 174 (177)
Q Consensus 159 ~~~i~~l~~~l~~~~~ 174 (177)
|.|++++++.|.+.+.
T Consensus 157 g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 157 ERQVAELKADLLALMP 172 (301)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHhcc
Confidence 9999999999988764
No 115
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=6.9e-27 Score=159.00 Aligned_cols=151 Identities=23% Similarity=0.257 Sum_probs=113.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEEeCCEEEEEEecCCchhhH------HhHHHHhc--C
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQRRFR------TMWERYCR--G 80 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~--~ 80 (177)
+.++|+++|++|||||||++++++..+.....+ +.......+..++..+.+|||||+..+. .....++. .
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 85 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 85 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccC
Confidence 568999999999999999999997654333333 3334455567788999999999988763 34455553 5
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc----CHHHHHHHhCcccccCCceeEEEeee
Q 030429 81 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL----SKQALVDQLGLESITDREVCCYMISC 156 (177)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (177)
+|++++|+|.++ ++....|+..+.. .+.|+++|+||+|+.+.. ..+++.+.++ .+++++||
T Consensus 86 ~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~Sa 150 (188)
T 2wjg_A 86 PDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG--------VKVVPLSA 150 (188)
T ss_dssp CSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBG
T ss_pred CCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHhC--------CCeEEEEe
Confidence 999999999875 6666677766654 378999999999986532 3344444443 36999999
Q ss_pred cCCCChHHHHHHHHHHhhhc
Q 030429 157 KDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 157 ~~~~~i~~l~~~l~~~~~~~ 176 (177)
+++.|++++|+++.+.+.+.
T Consensus 151 ~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 151 AKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp GGTBSHHHHHHHHHHHHTTC
T ss_pred cCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999987653
No 116
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.95 E-value=2e-28 Score=174.33 Aligned_cols=163 Identities=13% Similarity=0.163 Sum_probs=112.2
Q ss_pred cccceeEEEEEcCC---------CCCHHHHHHHHhc---CCCCCCCCCcc-ceeEE------------------EEEeCC
Q 030429 8 FFKQEMELSLIGLQ---------NAGKTSLVNTIAT---GGYSEDMIPTV-GFNMR------------------KVTKGN 56 (177)
Q Consensus 8 ~~~~~~~i~i~G~~---------~~GKSsli~~l~~---~~~~~~~~~t~-~~~~~------------------~~~~~~ 56 (177)
.....+||+++|.+ |||||||+++|++ ..+...+.++. +.... .++...
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence 45567999999999 9999999999998 44544444443 21110 123456
Q ss_pred EEEEEEe-----------------------cCCchhhHHhHHHHhc---------------------CCCEEEEEEeCCC
Q 030429 57 VTIKLWD-----------------------LGGQRRFRTMWERYCR---------------------GVSAILYVVDAAD 92 (177)
Q Consensus 57 ~~~~~~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~ 92 (177)
+.+++|| ++|++++...+..++. ++|++++|+|+++
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 7899999 5555555555555555 6999999999999
Q ss_pred C--CCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHH
Q 030429 93 R--DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLI 170 (177)
Q Consensus 93 ~--~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 170 (177)
+ .+++.+..|+..+.......+.|+++|+||+|+.+....++..+... ....++++++||++|.|++++|++|.
T Consensus 175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~----~~~~~~~~e~SAk~g~gv~elf~~l~ 250 (255)
T 3c5h_A 175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFAL----SKKNLQVVETSARSNVNVDLAFSTLV 250 (255)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHH----TSSSCCEEECBTTTTBSHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHH----hcCCCeEEEEECCCCCCHHHHHHHHH
Confidence 8 99999999888776542224689999999999965432222222111 11245799999999999999999999
Q ss_pred HHhh
Q 030429 171 KHSK 174 (177)
Q Consensus 171 ~~~~ 174 (177)
+.+.
T Consensus 251 ~~l~ 254 (255)
T 3c5h_A 251 QLID 254 (255)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8775
No 117
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.95 E-value=1.9e-26 Score=164.21 Aligned_cols=150 Identities=20% Similarity=0.231 Sum_probs=112.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEEeCCEEEEEEecCCchhhHH------hHHHHh--c
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMI--PTVGFNMRKVTKGNVTIKLWDLGGQRRFRT------MWERYC--R 79 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~ 79 (177)
.+.++|+++|++|||||||+++|++..+..... .|.......+..++..+.+|||||+..+.. ....++ .
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 457899999999999999999999766543322 344445555667789999999999876643 224444 5
Q ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc----CHHHHHHHhCcccccCCceeEEEee
Q 030429 80 GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL----SKQALVDQLGLESITDREVCCYMIS 155 (177)
Q Consensus 80 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S 155 (177)
.+|++++|+|+++.+ ....++..+... +.|+++|+||+|+.+.. ..+++.+.++ ++++++|
T Consensus 83 ~~d~ii~V~D~t~~~---~~~~~~~~l~~~----~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg--------~~vi~~S 147 (258)
T 3a1s_A 83 DADLVILVADSVNPE---QSLYLLLEILEM----EKKVILAMTAIDEAKKTGMKIDRYELQKHLG--------IPVVFTS 147 (258)
T ss_dssp CCSEEEEEEETTSCH---HHHHHHHHHHTT----TCCEEEEEECHHHHHHTTCCBCHHHHHHHHC--------SCEEECC
T ss_pred CCCEEEEEeCCCchh---hHHHHHHHHHhc----CCCEEEEEECcCCCCccchHHHHHHHHHHcC--------CCEEEEE
Confidence 899999999998853 334455555443 78999999999986532 2345555554 3799999
Q ss_pred ecCCCChHHHHHHHHHHhh
Q 030429 156 CKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 156 a~~~~~i~~l~~~l~~~~~ 174 (177)
|++|.|++++++++.+.+.
T Consensus 148 A~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 148 SVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred eeCCcCHHHHHHHHHHHhh
Confidence 9999999999999998765
No 118
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.94 E-value=2.9e-27 Score=162.53 Aligned_cols=160 Identities=22% Similarity=0.337 Sum_probs=120.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcccee--EEEEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN--MRKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
...++|+++|++|||||||++++.+..+...+.++.+.. ...+..++ +.+.+||++|++.+......+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 346899999999999999999999888777666765533 33455554 67889999999998887888889999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
+|+|+++..++.+...|+..+... .....|+++|+||+|+.+... ..+..+.. ....+.++++||+++.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~-----~~~~~~~~d~Sal~~~~i~ 156 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFA-----EKNNLSFIETSALDSTNVE 156 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 999999988888877777665432 224689999999999975322 22222211 1123478899999999999
Q ss_pred HHHHHHHHHhhh
Q 030429 164 AVIDWLIKHSKT 175 (177)
Q Consensus 164 ~l~~~l~~~~~~ 175 (177)
++++.|.+.+.+
T Consensus 157 ~l~~~l~~~~~~ 168 (199)
T 2f9l_A 157 EAFKNILTEIYR 168 (199)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987753
No 119
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.94 E-value=1.3e-26 Score=176.41 Aligned_cols=161 Identities=16% Similarity=0.120 Sum_probs=115.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEeCCEEEEEEecCCc----------hhhHHhHH-
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQ----------RRFRTMWE- 75 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~~- 75 (177)
...++|+++|.+|||||||+|++++..+. .....|.......+..++..+.+|||||+ +.|.....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 252 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 252 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHH
Confidence 35689999999999999999999976642 22233444445566778889999999997 44544333
Q ss_pred HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEE
Q 030429 76 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYM 153 (177)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 153 (177)
.+++.+|++++|+|++++.+.... .|+..+.. .++|+++|+||+|+.+... .++..+.+..........++++
T Consensus 253 ~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 327 (436)
T 2hjg_A 253 KAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 327 (436)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 467889999999999998887765 35554443 3789999999999976543 2334333332222334568999
Q ss_pred eeecCCCChHHHHHHHHHHhhh
Q 030429 154 ISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 154 ~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
+||++|.|++++|+.+.+.+.+
T Consensus 328 ~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 328 MSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999887654
No 120
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.94 E-value=3.8e-26 Score=163.66 Aligned_cols=148 Identities=28% Similarity=0.304 Sum_probs=107.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEEeCCEEEEEEecCCchhhH------HhHHHHhc--C
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQRRFR------TMWERYCR--G 80 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~--~ 80 (177)
+.++|+++|++|||||||+|+|++........+ |.......+.. +..+.+|||||+.++. .....++. .
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 80 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR 80 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence 357999999999999999999997653332223 33333333333 6789999999987764 34455554 6
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc----CHHHHHHHhCcccccCCceeEEEeee
Q 030429 81 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL----SKQALVDQLGLESITDREVCCYMISC 156 (177)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (177)
+|++++|+|+++. +....|...+.. .+.|+++|+||+|+.+.. ..+.+.+.++ ++++++||
T Consensus 81 ~d~vi~V~D~t~~---e~~~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~vi~~SA 145 (272)
T 3b1v_A 81 ADSILNVVDATNL---ERNLYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHLG--------VPVVATSA 145 (272)
T ss_dssp CSEEEEEEEGGGH---HHHHHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBT
T ss_pred CCEEEEEecCCch---HhHHHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC--------CCEEEEEc
Confidence 9999999999874 444455555544 378999999999986432 3344555543 37999999
Q ss_pred cCCCChHHHHHHHHHHhh
Q 030429 157 KDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 157 ~~~~~i~~l~~~l~~~~~ 174 (177)
++|.|++++|++|.+.+.
T Consensus 146 ~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 146 LKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp TTTBSHHHHHHHHHHSCT
T ss_pred cCCCCHHHHHHHHHHHHh
Confidence 999999999999998764
No 121
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.94 E-value=1.4e-26 Score=166.32 Aligned_cols=150 Identities=23% Similarity=0.263 Sum_probs=109.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEEeCCEEEEEEecCCchhhH----------HhHHHH-
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQRRFR----------TMWERY- 77 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~----------~~~~~~- 77 (177)
+.++|+++|.+|||||||+|+|++..+.....+ |.......+...+..+.+|||||+..+. .....+
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 358999999999999999999997764333222 3444555566778899999999977654 122233
Q ss_pred -hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc----CHHHHHHHhCcccccCCceeEE
Q 030429 78 -CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL----SKQALVDQLGLESITDREVCCY 152 (177)
Q Consensus 78 -~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 152 (177)
...+|++++|+|+++.+ ....+...+... ++|+++|+||+|+.+.. ..+.+.+.++ ++++
T Consensus 82 ~~~~~d~ii~VvD~~~~~---~~~~~~~~l~~~----~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~~i 146 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLE---RNLYLTLQLLEL----GIPCIVALNMLDIAEKQNIRIEIDALSARLG--------CPVI 146 (274)
T ss_dssp HHTCCSEEEEEEEGGGHH---HHHHHHHHHHHH----TCCEEEEEECHHHHHHTTEEECHHHHHHHHT--------SCEE
T ss_pred hhcCCCEEEEEecCCChH---HHHHHHHHHHhc----CCCEEEEEECccchhhhhHHHHHHHHHHhcC--------CCEE
Confidence 37899999999998743 333333333332 68999999999986542 3344555554 3799
Q ss_pred EeeecCCCChHHHHHHHHHHhhh
Q 030429 153 MISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 153 ~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
++||++|.|+++++++|.+.+.+
T Consensus 147 ~~SA~~g~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 147 PLVSTRGRGIEALKLAIDRYKAN 169 (274)
T ss_dssp ECCCGGGHHHHHHHHHHHTCCCC
T ss_pred EEEcCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999887653
No 122
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.94 E-value=7.5e-26 Score=160.97 Aligned_cols=145 Identities=25% Similarity=0.280 Sum_probs=107.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEEeCCEEEEEEecCCchhhHH----------hHHHHh--
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQRRFRT----------MWERYC-- 78 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~~~~-- 78 (177)
.+|+++|.+|||||||+|+|.+........+ |.......+..++..+.+|||||+..+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 3799999999999999999997754333223 44455556777889999999999876643 344566
Q ss_pred cCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc----CHHHHHHHhCcccccCCceeEEEe
Q 030429 79 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL----SKQALVDQLGLESITDREVCCYMI 154 (177)
Q Consensus 79 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 154 (177)
..+|++++|+|+++.+. ...+...+.. .+.|+++|+||+|+.+.. ....+.+.++ ++++++
T Consensus 82 ~~~d~vi~VvDas~~~~---~~~l~~~l~~----~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~vi~~ 146 (256)
T 3iby_A 82 LEYDCIINVIDACHLER---HLYLTSQLFE----LGKPVVVALNMMDIAEHRGISIDTEKLESLLG--------CSVIPI 146 (256)
T ss_dssp SCCSEEEEEEEGGGHHH---HHHHHHHHTT----SCSCEEEEEECHHHHHHTTCEECHHHHHHHHC--------SCEEEC
T ss_pred CCCCEEEEEeeCCCchh---HHHHHHHHHH----cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC--------CCEEEE
Confidence 88999999999988433 2333333322 378999999999986542 2344555553 379999
Q ss_pred eecCCCChHHHHHHHHHH
Q 030429 155 SCKDSINIDAVIDWLIKH 172 (177)
Q Consensus 155 Sa~~~~~i~~l~~~l~~~ 172 (177)
||++|.|+++++++|.+.
T Consensus 147 SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 147 QAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp BGGGTBSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999999876
No 123
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.94 E-value=5e-26 Score=174.01 Aligned_cols=157 Identities=18% Similarity=0.139 Sum_probs=98.9
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhH--------HHH
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMW--------ERY 77 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~ 77 (177)
.++.++|+++|.+|+|||||+|+|++... ......|.......+..+++.+.+|||||+.++...+ ..+
T Consensus 230 ~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 230 VSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HHHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CC
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 34678999999999999999999997642 1222234445556677889999999999987766443 235
Q ss_pred hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeec
Q 030429 78 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCK 157 (177)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (177)
+..+|++++|+|++++.++.....+.. +.... .++|+++|+||+|+.+...... +.+... ...+++++||+
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~-~l~~l--~~~piIvV~NK~Dl~~~~~~~~--~~l~~~----~~~~~i~vSAk 380 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRE-LKAAH--PAAKFLTVANKLDRAANADALI--RAIADG----TGTEVIGISAL 380 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHH-HHHHC--TTSEEEEEEECTTSCTTTHHHH--HHHHHH----HTSCEEECBTT
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHH-HHHhc--CCCCEEEEEECcCCCCccchhH--HHHHhc----CCCceEEEEEC
Confidence 788999999999999988764322222 22221 2689999999999976543321 111111 01369999999
Q ss_pred CCCChHHHHHHHHHHhh
Q 030429 158 DSINIDAVIDWLIKHSK 174 (177)
Q Consensus 158 ~~~~i~~l~~~l~~~~~ 174 (177)
+|.|+++++++|.+.+.
T Consensus 381 tg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 381 NGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TTBSHHHHHHHHTHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999998875
No 124
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.93 E-value=2.2e-25 Score=160.01 Aligned_cols=150 Identities=17% Similarity=0.143 Sum_probs=113.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEEeCCEEEEEEecCCchhhHH------hHHHHh--cCC
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQRRFRT------MWERYC--RGV 81 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~~~ 81 (177)
.++|+++|++|||||||++++++..+.....+ +.......+..++..+.+|||||+..+.. ....++ .++
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNA 82 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCC
Confidence 47999999999999999999997765433333 33444555677888999999999876654 444555 689
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc----CHHHHHHHhCcccccCCceeEEEeeec
Q 030429 82 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL----SKQALVDQLGLESITDREVCCYMISCK 157 (177)
Q Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (177)
|++++|+|+++. .....++..+... ...|+++|+||+|+.+.. ....+.+.++ ++++++||+
T Consensus 83 d~vi~v~D~~~~---~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~~~~~Sa~ 148 (271)
T 3k53_A 83 DVIVDIVDSTCL---MRNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKELG--------VPVIPTNAK 148 (271)
T ss_dssp SEEEEEEEGGGH---HHHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS--------SCEEECBGG
T ss_pred cEEEEEecCCcc---hhhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHcC--------CcEEEEEeC
Confidence 999999999873 4455556666554 238999999999975422 2345555554 379999999
Q ss_pred CCCChHHHHHHHHHHhhh
Q 030429 158 DSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 158 ~~~~i~~l~~~l~~~~~~ 175 (177)
+|.|++++++.+.+.+.+
T Consensus 149 ~g~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 149 KGEGVEELKRMIALMAEG 166 (271)
T ss_dssp GTBTHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999988754
No 125
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.93 E-value=4.2e-26 Score=177.57 Aligned_cols=159 Identities=21% Similarity=0.308 Sum_probs=110.9
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEE------------eCCEEEEEEecCCchhhHHhHH
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT------------KGNVTIKLWDLGGQRRFRTMWE 75 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~------------~~~~~~~~~D~~g~~~~~~~~~ 75 (177)
...+.+||+++|.+|||||||++++.++.+.....+|.+....... ...+.+.+||+||++.+.....
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 3567799999999999999999999998888777788877666431 2258999999999999998888
Q ss_pred HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEE
Q 030429 76 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYM 153 (177)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 153 (177)
.++..+|++++|+|+++. +....|+..+.... .+.|+++|+||+|+.+... .++..+.... .+.++++
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~ 186 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFPA-----IENRFHR 186 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCGG-----GTTCEEE
T ss_pred HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHHh-----cCCceEE
Confidence 899999999999999764 45556666665442 3689999999999976433 3333333222 1236999
Q ss_pred eeecCCCChHHHHHHHHHHhhhc
Q 030429 154 ISCKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 154 ~Sa~~~~~i~~l~~~l~~~~~~~ 176 (177)
+||++|.|++++++.|.+.+.+.
T Consensus 187 vSA~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 187 ISCKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp CCC-----CTTHHHHHHHHHTCT
T ss_pred EecCcccCHHHHHHHHHHHHhcc
Confidence 99999999999999999987653
No 126
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.93 E-value=6.9e-26 Score=166.78 Aligned_cols=161 Identities=19% Similarity=0.225 Sum_probs=117.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEeCC-EEEEEEecCCchh----hHHhHHHH---hc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYS--EDMIPTVGFNMRKVTKGN-VTIKLWDLGGQRR----FRTMWERY---CR 79 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~----~~~~~~~~---~~ 79 (177)
+.-.+|+++|.+|||||||++++++.... .....|.......+..++ ..+.+|||||... +..+...+ +.
T Consensus 156 k~la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~ 235 (342)
T 1lnz_A 156 KVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIE 235 (342)
T ss_dssp ECCCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH
T ss_pred hhcCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHH
Confidence 33457999999999999999999976532 222345555666666665 8999999999643 22232333 44
Q ss_pred CCCEEEEEEeCCC---CCCHHHHHHHHHHHHcCCC-CCCCcEEEEeeCCCcccccC-HHHHHHHhCcccccCCceeEEEe
Q 030429 80 GVSAILYVVDAAD---RDSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMI 154 (177)
Q Consensus 80 ~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 154 (177)
.+|++++|+|+++ +.+++....|+..+..... ...+|+++|+||+|+.+..+ .+++.+.+... .+++++
T Consensus 236 ~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~------~~v~~i 309 (342)
T 1lnz_A 236 RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDD------YPVFPI 309 (342)
T ss_dssp HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSC------CCBCCC
T ss_pred hccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhcC------CCEEEE
Confidence 5999999999998 7888888888888766532 34789999999999976432 23333333211 468999
Q ss_pred eecCCCChHHHHHHHHHHhhhc
Q 030429 155 SCKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 155 Sa~~~~~i~~l~~~l~~~~~~~ 176 (177)
||+++.|+++++++|.+.+.+.
T Consensus 310 SA~tg~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 310 SAVTREGLRELLFEVANQLENT 331 (342)
T ss_dssp SSCCSSTTHHHHHHHHHHHTSC
T ss_pred ECCCCcCHHHHHHHHHHHHhhC
Confidence 9999999999999999988754
No 127
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.93 E-value=4.1e-25 Score=161.15 Aligned_cols=136 Identities=20% Similarity=0.302 Sum_probs=108.7
Q ss_pred CCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCC----------CCCCHHHHHHHHHHHHcCC
Q 030429 41 MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAA----------DRDSVPIARSELHELLMKP 110 (177)
Q Consensus 41 ~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~ 110 (177)
..+|.|+....+..+++.+++||++|+++++..|..++++++++++|+|++ +..++.+...|+..+....
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 456788888888899999999999999999999999999999999999665 5677888889999988776
Q ss_pred CCCCCcEEEEeeCCCcccc------------------cCHHHHHHHh-----CcccccCCceeEEEeeecCCCChHHHHH
Q 030429 111 SLSGIPLLVLGNKIDKSEA------------------LSKQALVDQL-----GLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 111 ~~~~~~~iiv~nK~D~~~~------------------~~~~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
...+.|+++++||+|+.+. ...++..+.+ .......+.+.+++|||+++.||+++|+
T Consensus 231 ~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~ 310 (327)
T 3ohm_A 231 WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFA 310 (327)
T ss_dssp GGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHH
T ss_pred ccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHH
Confidence 5568999999999998652 2333333321 1111233567788999999999999999
Q ss_pred HHHHHhhhc
Q 030429 168 WLIKHSKTA 176 (177)
Q Consensus 168 ~l~~~~~~~ 176 (177)
.+.+.+.+.
T Consensus 311 ~v~~~Il~~ 319 (327)
T 3ohm_A 311 AVKDTILQL 319 (327)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999987653
No 128
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.93 E-value=7.1e-26 Score=154.69 Aligned_cols=158 Identities=22% Similarity=0.346 Sum_probs=120.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
...++|+++|++|||||||++++.+..+...+.+|.+... ..+..++ +.+.+||++|.+++...+..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 4568999999999999999999998888777777776543 3455555 55678999999988888888889999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
+|+|.++..+++++..|+..+... .....|+++++||+|+.+... .....+.. ....+.++++|++++.|++
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~-----~~~~~~~ld~Sald~~~v~ 180 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFA-----EKNGLSFIETSALDSTNVE 180 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 999999888888777777655432 124689999999999875322 22222111 1123478899999999999
Q ss_pred HHHHHHHHHh
Q 030429 164 AVIDWLIKHS 173 (177)
Q Consensus 164 ~l~~~l~~~~ 173 (177)
++++.|.+.+
T Consensus 181 ~l~~~l~~~i 190 (191)
T 1oix_A 181 AAFQTILTEI 190 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 129
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.93 E-value=1.7e-25 Score=171.10 Aligned_cols=162 Identities=16% Similarity=0.134 Sum_probs=114.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEEeCCEEEEEEecCC----------chhhHHhHH
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGG----------QRRFRTMWE 75 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~ 75 (177)
....++|+++|.+|+|||||++++.+... ......|.......+..++..+.+||||| ++.+.....
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 271 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 271 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHH
Confidence 35679999999999999999999996542 22223344444556777888999999999 677766544
Q ss_pred -HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEE
Q 030429 76 -RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCY 152 (177)
Q Consensus 76 -~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 152 (177)
.+++.+|++++|+|+++... +....++..+.. .++|+++|+||+|+.+... .++..+.+.........++++
T Consensus 272 ~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (456)
T 4dcu_A 272 LKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 346 (456)
T ss_dssp HHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEE
Confidence 37788999999999987543 222333333333 3689999999999976432 234444433322223456899
Q ss_pred EeeecCCCChHHHHHHHHHHhhh
Q 030429 153 MISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 153 ~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
++||++|.|++++|+.+.+.+.+
T Consensus 347 ~~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 347 FMSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHH
T ss_pred EEcCCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999999987754
No 130
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.93 E-value=1.6e-25 Score=165.34 Aligned_cols=134 Identities=20% Similarity=0.302 Sum_probs=106.5
Q ss_pred CCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCC----------CCCHHHHHHHHHHHHcCCC
Q 030429 42 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAAD----------RDSVPIARSELHELLMKPS 111 (177)
Q Consensus 42 ~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~ 111 (177)
.+|.++....+..+++.+++||++|+++++..|..++++++++|+|+|+++ ..++.+...|+..+.....
T Consensus 178 ~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~ 257 (353)
T 1cip_A 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW 257 (353)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred CceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc
Confidence 356777777788889999999999999999999999999999999999999 4568899999999887655
Q ss_pred CCCCcEEEEeeCCCcccc-----------------cCHHHHHHHhC-----cccc-cCCceeEEEeeecCCCChHHHHHH
Q 030429 112 LSGIPLLVLGNKIDKSEA-----------------LSKQALVDQLG-----LESI-TDREVCCYMISCKDSINIDAVIDW 168 (177)
Q Consensus 112 ~~~~~~iiv~nK~D~~~~-----------------~~~~~~~~~~~-----~~~~-~~~~~~~~~~Sa~~~~~i~~l~~~ 168 (177)
..+.|+++++||+|+.+. ...++..+.+. .... ..+.+.+++|||+++.||+++|++
T Consensus 258 ~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~ 337 (353)
T 1cip_A 258 FTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDA 337 (353)
T ss_dssp GTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred ccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHH
Confidence 567999999999998532 22333333221 1100 135678999999999999999999
Q ss_pred HHHHhhh
Q 030429 169 LIKHSKT 175 (177)
Q Consensus 169 l~~~~~~ 175 (177)
+.+.+.+
T Consensus 338 v~~~i~~ 344 (353)
T 1cip_A 338 VTDVIIK 344 (353)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988764
No 131
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.93 E-value=6.9e-25 Score=165.38 Aligned_cols=163 Identities=20% Similarity=0.186 Sum_probs=116.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC---cc----------ce---------eEEEEEeCCEEEEEEecCC
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIP---TV----------GF---------NMRKVTKGNVTIKLWDLGG 66 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~---t~----------~~---------~~~~~~~~~~~~~~~D~~g 66 (177)
.+..++|+++|++++|||||+++|++......... +. .. ...........+.+|||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 45679999999999999999999986433221100 00 00 0000011227899999999
Q ss_pred chhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCc--ccc
Q 030429 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGL--ESI 144 (177)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~--~~~ 144 (177)
+++|...+..++..+|++++|+|+++..++.....++..+... ...|+++|+||+|+.+.....+..+.+.. ...
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~ 161 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGT 161 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999987777777777655433 23589999999999875433332222211 112
Q ss_pred cCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 145 TDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 145 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
.....+++++||++|.|+++|+++|.+.+.
T Consensus 162 ~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 162 WAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp TTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 234568999999999999999999998664
No 132
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.93 E-value=3.9e-25 Score=169.26 Aligned_cols=152 Identities=17% Similarity=0.253 Sum_probs=114.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEEeCCEEEEEEecCCch-hhH--------HhHHHH
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQR-RFR--------TMWERY 77 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~-~~~--------~~~~~~ 77 (177)
++.++|+++|.||+|||||+|+|++... ......|.......+..++..+.+|||||.. .+. .....+
T Consensus 241 r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 241 NRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp HHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred cCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 3458999999999999999999997652 2233345556667778889999999999987 543 223457
Q ss_pred hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeec
Q 030429 78 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCK 157 (177)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (177)
+..+|++++|+|++++.+++... .+ ..+ .++|+++|+||+|+.+....+++.+... ...+++++||+
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il-~~l-----~~~piivV~NK~DL~~~~~~~~~~~~~~------~~~~~i~iSAk 387 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-IL-ERI-----KNKRYLVVINKVDVVEKINEEEIKNKLG------TDRHMVKISAL 387 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HH-HHH-----TTSSEEEEEEECSSCCCCCHHHHHHHHT------CSTTEEEEEGG
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HH-HHh-----cCCCEEEEEECcccccccCHHHHHHHhc------CCCcEEEEECC
Confidence 88899999999999988776532 22 222 2689999999999976544444433322 12468999999
Q ss_pred CCCChHHHHHHHHHHhh
Q 030429 158 DSINIDAVIDWLIKHSK 174 (177)
Q Consensus 158 ~~~~i~~l~~~l~~~~~ 174 (177)
+|.|+++++++|.+.+.
T Consensus 388 tg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 388 KGEGLEKLEESIYRETQ 404 (482)
T ss_dssp GTCCHHHHHHHHHHHTH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999998754
No 133
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.92 E-value=6.6e-25 Score=160.59 Aligned_cols=134 Identities=19% Similarity=0.234 Sum_probs=106.0
Q ss_pred CCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCC----------CCCCHHHHHHHHHHHHcCC
Q 030429 41 MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAA----------DRDSVPIARSELHELLMKP 110 (177)
Q Consensus 41 ~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~ 110 (177)
..+|.++....+..+++.+++||++|+++++..|..++++++++++|+|++ +..++.+...|+..+....
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 345677788888889999999999999999999999999999999999998 6778999999999998876
Q ss_pred CCCCCcEEEEeeCCCccccc-----------------CHHHHHHHhCccc-----------ccC-----------CceeE
Q 030429 111 SLSGIPLLVLGNKIDKSEAL-----------------SKQALVDQLGLES-----------ITD-----------REVCC 151 (177)
Q Consensus 111 ~~~~~~~iiv~nK~D~~~~~-----------------~~~~~~~~~~~~~-----------~~~-----------~~~~~ 151 (177)
...+.|+++++||+|+.+.. ..++..+.+.... ... +.+.+
T Consensus 225 ~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~ 304 (340)
T 4fid_A 225 FLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYT 304 (340)
T ss_dssp GGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEE
T ss_pred ccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEE
Confidence 66789999999999986421 1222222211111 111 45788
Q ss_pred EEeeecCCCChHHHHHHHHHHhh
Q 030429 152 YMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 152 ~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
++|||++..||+.+|+.+.+.+.
T Consensus 305 h~TsA~dt~nv~~vF~~v~~~Il 327 (340)
T 4fid_A 305 NPTNATDGSNIKRVFMLAVDVIM 327 (340)
T ss_dssp EEECTTCHHHHHHHHHHHHHHHH
T ss_pred EEEEeeCcHHHHHHHHHHHHHHH
Confidence 99999999999999999998765
No 134
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.92 E-value=1.7e-24 Score=160.96 Aligned_cols=159 Identities=19% Similarity=0.205 Sum_probs=117.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEEeCCEEEEEEecCCchhhH---------HhHHHHh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSE--DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR---------TMWERYC 78 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~~~~~~~ 78 (177)
...++|+++|.+|||||||++++.+..... ....|.......+..++..+.+|||||..... .......
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 466899999999999999999999766422 22345556666666778899999999964321 1222345
Q ss_pred cCCCEEEEEEeCCCCC--CHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeee
Q 030429 79 RGVSAILYVVDAADRD--SVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISC 156 (177)
Q Consensus 79 ~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (177)
..+|++++|+|++++. ++.....++..+..... +.|+++|+||+|+.+....++..+... ....+++++||
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~iSA 317 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVADEENIKRLEKFVK-----EKGLNPIKISA 317 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTCCHHHHHHHHHHHH-----HTTCCCEECBT
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccCChHHHHHHHHHHH-----hcCCCeEEEeC
Confidence 5799999999998877 67777788877765432 789999999999976543333322221 12347899999
Q ss_pred cCCCChHHHHHHHHHHhhh
Q 030429 157 KDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 157 ~~~~~i~~l~~~l~~~~~~ 175 (177)
++|.|+++++++|.+.+..
T Consensus 318 ~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 318 LKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TTTBTHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999988753
No 135
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.92 E-value=1.8e-24 Score=164.68 Aligned_cols=151 Identities=20% Similarity=0.220 Sum_probs=103.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEeCCEEEEEEecCCchh---------hHHhHHHHhcC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR---------FRTMWERYCRG 80 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~~~ 80 (177)
.+|+++|.||||||||+|+|++.... .....|.......+..++..+.+|||||... +......+++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 37999999999999999999976532 2223344555667778889999999999653 34556678999
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHH-HHHhCcccccCCceeEEEeeecCC
Q 030429 81 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQAL-VDQLGLESITDREVCCYMISCKDS 159 (177)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~ 159 (177)
+|++++|+|++++.+... .++..++.. .++|+++|+||+|+.+.. ..+. .+... .....++++||++|
T Consensus 82 ad~il~V~D~~~~~~~~d--~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~~-----lg~~~~~~iSA~~g 150 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKED--ESLADFLRK---STVDTILVANKAENLREF-EREVKPELYS-----LGFGEPIPVSAEHN 150 (439)
T ss_dssp CSEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHGG-----GSSCSCEECBTTTT
T ss_pred CCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHHh-----cCCCCEEEEeccCC
Confidence 999999999987654432 233333332 368999999999985431 1111 22111 11125789999999
Q ss_pred CChHHHHHHHHHHhh
Q 030429 160 INIDAVIDWLIKHSK 174 (177)
Q Consensus 160 ~~i~~l~~~l~~~~~ 174 (177)
.|++++++.+.+.+.
T Consensus 151 ~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 151 INLDTMLETIIKKLE 165 (439)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcc
Confidence 999999999998775
No 136
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.92 E-value=4.7e-24 Score=161.06 Aligned_cols=161 Identities=16% Similarity=0.175 Sum_probs=104.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCC---CCCCCCC--ccceeEEEEEe---------------C--------CEEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGG---YSEDMIP--TVGFNMRKVTK---------------G--------NVTIK 60 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~---~~~~~~~--t~~~~~~~~~~---------------~--------~~~~~ 60 (177)
.+..++|+++|+.++|||||+++|.+.. +.....+ |....+..... . ...+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 3567999999999999999999998442 2222222 44433332211 1 27899
Q ss_pred EEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC----HHHHH
Q 030429 61 LWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS----KQALV 136 (177)
Q Consensus 61 ~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~----~~~~~ 136 (177)
+|||||+++|...+...+..+|++++|+|+++..........+..+... ...|+++|+||+|+.+... .+++.
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l---~~~~iivv~NK~Dl~~~~~~~~~~~~i~ 161 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL---GIDKIIIVQNKIDLVDEKQAEENYEQIK 161 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECTTSSCTTTTTTHHHHHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc---CCCeEEEEEEccCCCCHHHHHHHHHHHH
Confidence 9999999999887777788899999999998765334333444333222 2358999999999976532 23333
Q ss_pred HHhCcccccCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 137 DQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
+.+.. ......+++++||++|.|+++|+++|.+.+.
T Consensus 162 ~~l~~--~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 162 EFVKG--TIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHHTT--STTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHhh--cCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 33332 1234568999999999999999999998654
No 137
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.92 E-value=2.1e-24 Score=165.69 Aligned_cols=159 Identities=18% Similarity=0.166 Sum_probs=111.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCC----C---C--CCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCC
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGG----Y---S--EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGV 81 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~----~---~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 81 (177)
+.++|+++|.+++|||||+++|.+.. . . .....|.......+..++..+.+|||||+++|...+...+..+
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~a 97 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADII 97 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSC
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhC
Confidence 57899999999999999999998765 1 1 1122344455555667889999999999999988888899999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCccc--c-cCCceeEEEeeecC
Q 030429 82 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES--I-TDREVCCYMISCKD 158 (177)
Q Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~Sa~~ 158 (177)
|++++|+|+++... ......+..+.. .++|+++|+||+|+.+.+..++..+.+.... . .....+++++||++
T Consensus 98 D~~ilVvda~~g~~-~qt~e~l~~~~~----~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~ 172 (482)
T 1wb1_A 98 DLALIVVDAKEGPK-TQTGEHMLILDH----FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKT 172 (482)
T ss_dssp CEEEEEEETTTCSC-HHHHHHHHHHHH----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTT
T ss_pred CEEEEEEecCCCcc-HHHHHHHHHHHH----cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcC
Confidence 99999999987532 222333333222 3678899999999986433333222222110 0 11245899999999
Q ss_pred CCChHHHHHHHHHHhh
Q 030429 159 SINIDAVIDWLIKHSK 174 (177)
Q Consensus 159 ~~~i~~l~~~l~~~~~ 174 (177)
|.|+++|+++|.+.+.
T Consensus 173 g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 173 GFGVDELKNLIITTLN 188 (482)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhc
Confidence 9999999999998764
No 138
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=5.6e-26 Score=158.04 Aligned_cols=118 Identities=23% Similarity=0.320 Sum_probs=93.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcC----C
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSED---MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRG----V 81 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~----~ 81 (177)
..+.++|+++|++|+|||||++++.+..+... ..++... ......+.+||+||++.+...+..++.. +
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 83 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-----DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 83 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET-----TGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE-----EeeCceEEEEECCCcHHHHHHHHHHHHhccccC
Confidence 35678999999999999999999998776442 2222221 1256789999999999998888888776 8
Q ss_pred CEEEEEEeCC-CCCCHHHHHHHHHHHHcCC---CCCCCcEEEEeeCCCcccccC
Q 030429 82 SAILYVVDAA-DRDSVPIARSELHELLMKP---SLSGIPLLVLGNKIDKSEALS 131 (177)
Q Consensus 82 d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~iiv~nK~D~~~~~~ 131 (177)
|++++|+|++ ++.++.....|+..+.... ...+.|+++|+||+|+.+...
T Consensus 84 ~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 137 (218)
T 1nrj_B 84 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 137 (218)
T ss_dssp EEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred CEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCC
Confidence 9999999999 8899999988888876532 225789999999999977544
No 139
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.92 E-value=1.1e-24 Score=165.97 Aligned_cols=152 Identities=18% Similarity=0.218 Sum_probs=102.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCC--CC-CCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHH--------HHh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGY--SE-DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWE--------RYC 78 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~-~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~--------~~~ 78 (177)
++.++|+++|.+|+|||||+|+|++..+ .. ....|.......+..++..+.+|||||...+..... .++
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 4678999999999999999999987543 22 222334444455677899999999999876554333 257
Q ss_pred cCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecC
Q 030429 79 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKD 158 (177)
Q Consensus 79 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (177)
..+|++++|+|++++.+... ..++..+ . ..|+++|+||+|+.+..... .... .....+++++||++
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l-~-----~~piivV~NK~Dl~~~~~~~----~~~~---~~~~~~~i~iSAkt 367 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIYEQV-K-----HRPLILVMNKIDLVEKQLIT----SLEY---PENITQIVHTAAAQ 367 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHHHHH-T-----TSCEEEEEECTTSSCGGGST----TCCC---CTTCCCEEEEBTTT
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHHHhc-c-----CCcEEEEEECCCCCcchhhH----HHHH---hccCCcEEEEECCC
Confidence 78999999999998766554 3344433 2 36999999999997653221 1111 11345799999999
Q ss_pred CCChHHHHHHHHHHhhh
Q 030429 159 SINIDAVIDWLIKHSKT 175 (177)
Q Consensus 159 ~~~i~~l~~~l~~~~~~ 175 (177)
|.|+++++++|.+.+..
T Consensus 368 g~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 368 KQGIDSLETAILEIVQT 384 (462)
T ss_dssp TBSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999998754
No 140
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.92 E-value=3.2e-24 Score=163.40 Aligned_cols=160 Identities=18% Similarity=0.107 Sum_probs=107.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhH------------H
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMW------------E 75 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~------------~ 75 (177)
..++|+++|++|||||||+|++++... ......|.......+..++..+.+|||||..+..... .
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 458999999999999999999997653 2222233344455667788899999999975433221 2
Q ss_pred HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEE
Q 030429 76 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYM 153 (177)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 153 (177)
.++..+|++++|+|+++..+.... ++...... .++|+++|+||+|+.+... .++..+.+..........++++
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQDQ--RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIF 333 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEE
Confidence 356779999999999887665542 23333332 3689999999999976432 3334333322222234568999
Q ss_pred eeecCCCChHHHHHHHHHHhhh
Q 030429 154 ISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 154 ~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
+||++|.|++++|+.+.+.+.+
T Consensus 334 ~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 334 TSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999887654
No 141
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.92 E-value=3e-24 Score=159.07 Aligned_cols=133 Identities=21% Similarity=0.300 Sum_probs=97.6
Q ss_pred CccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCC----------CCCHHHHHHHHHHHHcCCCC
Q 030429 43 PTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAAD----------RDSVPIARSELHELLMKPSL 112 (177)
Q Consensus 43 ~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~ 112 (177)
+|.++....+..+++.+++|||+|++.++..|..++++++++++|+|+++ ..++.+...|+..+......
T Consensus 187 ~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~ 266 (362)
T 1zcb_A 187 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266 (362)
T ss_dssp CCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence 35566666777889999999999999999999999999999999999999 56899999999998876445
Q ss_pred CCCcEEEEeeCCCcccc------------------cCHHHHHHHh-----Cccccc-CCceeEEEeeecCCCChHHHHHH
Q 030429 113 SGIPLLVLGNKIDKSEA------------------LSKQALVDQL-----GLESIT-DREVCCYMISCKDSINIDAVIDW 168 (177)
Q Consensus 113 ~~~~~iiv~nK~D~~~~------------------~~~~~~~~~~-----~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~~ 168 (177)
.+.|+++++||+|+.+. ...++..+.+ ...... .+.+.+++|||+++.||+++|++
T Consensus 267 ~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~ 346 (362)
T 1zcb_A 267 SNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRD 346 (362)
T ss_dssp TTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHH
Confidence 67999999999998632 2333433322 111111 34567899999999999999999
Q ss_pred HHHHhhh
Q 030429 169 LIKHSKT 175 (177)
Q Consensus 169 l~~~~~~ 175 (177)
+.+.+.+
T Consensus 347 v~~~i~~ 353 (362)
T 1zcb_A 347 VKDTILH 353 (362)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987754
No 142
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.92 E-value=7.1e-24 Score=160.22 Aligned_cols=161 Identities=17% Similarity=0.206 Sum_probs=111.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCC--ccceeEEEEEe------------------C-----CEEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIP--TVGFNMRKVTK------------------G-----NVTIK 60 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~--t~~~~~~~~~~------------------~-----~~~~~ 60 (177)
.+..++|+++|+.++|||||+++|.+... .....+ |....+..... + ...+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 35679999999999999999999984322 222222 44443333221 0 27899
Q ss_pred EEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH----HHHH
Q 030429 61 LWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK----QALV 136 (177)
Q Consensus 61 ~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~----~~~~ 136 (177)
+|||||+++|...+...+..+|++++|+|+++..........+..+... ...|+++|+||+|+.+.... +++.
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~ 163 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIK 163 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEECccCCCHHHHHHHHHHHH
Confidence 9999999999887777788899999999998764333333333333221 23589999999999875322 2233
Q ss_pred HHhCcccccCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 137 DQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
+.+.. ......+++++||++|.|+++|+++|.+.+.
T Consensus 164 ~~l~~--~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 164 EFIEG--TVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHTT--STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHh--cCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 33221 1124568999999999999999999998654
No 143
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.92 E-value=4.9e-24 Score=154.95 Aligned_cols=156 Identities=17% Similarity=0.167 Sum_probs=106.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEeCCEEEEEEecCCch-hhHHhH--------HHH
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQR-RFRTMW--------ERY 77 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~-~~~~~~--------~~~ 77 (177)
.+..+|+++|++|+|||||+|++++..+. .....|.......+..++.++.+|||||.. ...... ..+
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 45568999999999999999999977542 112223333334456778999999999986 332221 234
Q ss_pred hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-ccCHHHHHHHhCcccccCCceeEEEeee
Q 030429 78 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE-ALSKQALVDQLGLESITDREVCCYMISC 156 (177)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (177)
+..+|++++|+|+++ +.....++...+.. .+.|+++++||+|+.. .....+..+.+... .....++++||
T Consensus 86 l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~---~~~~~~i~iSA 156 (301)
T 1ega_A 86 IGDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLASQ---MNFLDIVPISA 156 (301)
T ss_dssp CCCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHHTT---SCCSEEEECCT
T ss_pred HhcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCccHHHHHHHHHHHHHh---cCcCceEEEEC
Confidence 678999999999976 33333455444443 4689999999999976 22222333333211 11226899999
Q ss_pred cCCCChHHHHHHHHHHhh
Q 030429 157 KDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 157 ~~~~~i~~l~~~l~~~~~ 174 (177)
+++.|++++++.+.+.+.
T Consensus 157 ~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 157 ETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp TTTTTHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHhCC
Confidence 999999999999987654
No 144
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.91 E-value=2.5e-24 Score=163.85 Aligned_cols=151 Identities=21% Similarity=0.229 Sum_probs=101.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCccceeEEEEEeCCEEEEEEecCCch--------hhHHhHHHHhcCC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQR--------RFRTMWERYCRGV 81 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~~~~~ 81 (177)
.+|+++|.+|||||||+|+|++..... ....|..........++..+.+|||||+. .+......++..+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 589999999999999999999765431 12223334444555667889999999975 5666677788999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCC
Q 030429 82 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSIN 161 (177)
Q Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 161 (177)
|++++|+|++++.+... .++..++.. .++|+++|+||+|+.+... ... ..+....-.++++||++|.|
T Consensus 84 d~il~vvD~~~~~~~~d--~~~~~~l~~---~~~pvilv~NK~D~~~~~~------~~~-~~~~lg~~~~~~iSA~~g~g 151 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAAD--EEVAKILYR---TKKPVVLAVNKLDNTEMRA------NIY-DFYSLGFGEPYPISGTHGLG 151 (436)
T ss_dssp SEEEEEEETTTCSCHHH--HHHHHHHTT---CCSCEEEEEECCCC-----------CCC-SSGGGSSCCCEECBTTTTBT
T ss_pred CEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCccchh------hHH-HHHHcCCCCeEEEeCcCCCC
Confidence 99999999988766543 455555443 4789999999999865321 011 11111112689999999999
Q ss_pred hHHHHHHHHHHhhh
Q 030429 162 IDAVIDWLIKHSKT 175 (177)
Q Consensus 162 i~~l~~~l~~~~~~ 175 (177)
++++++++.+.+.+
T Consensus 152 v~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 152 LGDLLDAVAEHFKN 165 (436)
T ss_dssp HHHHHHHHHHTGGG
T ss_pred hHHHHHHHHHhcCc
Confidence 99999999988753
No 145
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.91 E-value=9.5e-25 Score=164.57 Aligned_cols=155 Identities=17% Similarity=0.145 Sum_probs=109.3
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEeCCE-EEEEEecCCchhhHHh-------HHH
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNV-TIKLWDLGGQRRFRTM-------WER 76 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~-~~~~~D~~g~~~~~~~-------~~~ 76 (177)
.....++|+++|.+|+|||||++++++..+. .....|.......+...+. .+.+|||||+.++... ...
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHH
Confidence 3456789999999999999999999977652 2233455566666666554 8999999998765432 456
Q ss_pred HhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeee
Q 030429 77 YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISC 156 (177)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (177)
++..+|++++|+|++. ......|+..+... +.|+++|+||+|+.+.... +..+.+.. ..+.+++++||
T Consensus 110 ~l~~aD~vllVvD~~~---~~~~~~~l~~l~~~----~~piIvV~NK~Dl~~~~~~-~~~~~l~~----~~g~~v~~vSA 177 (423)
T 3qq5_A 110 VFYRADCGILVTDSAP---TPYEDDVVNLFKEM----EIPFVVVVNKIDVLGEKAE-ELKGLYES----RYEAKVLLVSA 177 (423)
T ss_dssp HHTSCSEEEEECSSSC---CHHHHHHHHHHHHT----TCCEEEECCCCTTTTCCCT-HHHHHSSC----CTTCCCCCCSS
T ss_pred HHhcCCEEEEEEeCCC---hHHHHHHHHHHHhc----CCCEEEEEeCcCCCCccHH-HHHHHHHH----HcCCCEEEEEC
Confidence 7889999999999832 33445555555444 7899999999999876543 33333322 12347999999
Q ss_pred cCCCChHHHHHHHHHHhh
Q 030429 157 KDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 157 ~~~~~i~~l~~~l~~~~~ 174 (177)
++|.|+++++++|.+.+.
T Consensus 178 ktg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 178 LQKKGFDDIGKTISEILP 195 (423)
T ss_dssp CCTTSTTTHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHhhh
Confidence 999999999999999874
No 146
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.91 E-value=2.3e-23 Score=158.47 Aligned_cols=155 Identities=17% Similarity=0.171 Sum_probs=106.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCC--CC-------------------------------CCCCCccceeEEEEEeC
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGG--YS-------------------------------EDMIPTVGFNMRKVTKG 55 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~--~~-------------------------------~~~~~t~~~~~~~~~~~ 55 (177)
.+..++|+++|.+++|||||+++|+... .. +....|.......++.+
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 4567999999999999999999996321 00 11223445555567778
Q ss_pred CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCC---H---HHHHHHHHHHHcCCCCCCCc-EEEEeeCCCccc
Q 030429 56 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDS---V---PIARSELHELLMKPSLSGIP-LLVLGNKIDKSE 128 (177)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~ 128 (177)
+..+.+|||||+++|...+..++..+|++++|+|+++... + ......+..... .++| +++|+||+|+..
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINKMDDPT 169 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeEEEEeecCCCcc
Confidence 8999999999999999988889999999999999987542 1 122333332222 2456 999999999864
Q ss_pred cc----CHHHHHHH----hCccccc-CCceeEEEeeecCCCChHHHHH
Q 030429 129 AL----SKQALVDQ----LGLESIT-DREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 129 ~~----~~~~~~~~----~~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
.. ..++..+. +....+. ...++++++||++|.|++++.+
T Consensus 170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 21 11222222 2111111 1256899999999999999554
No 147
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.91 E-value=1.9e-23 Score=160.79 Aligned_cols=153 Identities=14% Similarity=0.077 Sum_probs=103.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCC--C-------------------------------CCCCCCccceeEEEEEeCC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGG--Y-------------------------------SEDMIPTVGFNMRKVTKGN 56 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~--~-------------------------------~~~~~~t~~~~~~~~~~~~ 56 (177)
+..+||+++|.+++|||||+++|++.. + ......|.......++.++
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 567999999999999999999997441 0 1112335555666677888
Q ss_pred EEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHH-----HHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc-
Q 030429 57 VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVP-----IARSELHELLMKPSLSGIPLLVLGNKIDKSEAL- 130 (177)
Q Consensus 57 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~- 130 (177)
..+.+|||||+++|...+..++..+|++++|+|+++..+.. ....+...+.... ...|+++|+||+|+.+..
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~~ 188 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQ 188 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTCH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccchH
Confidence 99999999999999999999999999999999998864322 1222222222221 235799999999997631
Q ss_pred -CHHHHHHHhC----cccccCCceeEEEeeecCCCChHH
Q 030429 131 -SKQALVDQLG----LESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 131 -~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
..++..+.+. ...+....++++++||++|.|+++
T Consensus 189 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 189 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 1222222221 111222357899999999999985
No 148
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.91 E-value=1.1e-23 Score=156.75 Aligned_cols=146 Identities=10% Similarity=0.040 Sum_probs=111.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADR 93 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 93 (177)
+|+++|.+++|||||+++|+ ....|.+.....++.++..+.+|||||+++|.......+..+|++++|+| + .
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~-~ 94 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-P-Q 94 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T-T
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C-C
Confidence 99999999999999999997 34456666667777788899999999999998888888899999999999 4 4
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCcE-EEEee-CCCcccccCHH----HHHHHhCcccccCCceeEEE--eeecC---CCCh
Q 030429 94 DSVPIARSELHELLMKPSLSGIPL-LVLGN-KIDKSEALSKQ----ALVDQLGLESITDREVCCYM--ISCKD---SINI 162 (177)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~-iiv~n-K~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~Sa~~---~~~i 162 (177)
........++..+... ++|. ++++| |+|+ +....+ ++.+.+... ....+++++ +||++ +.|+
T Consensus 95 g~~~qt~e~~~~~~~~----~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~--~~~~~~ii~~~~SA~~~~~g~gi 167 (370)
T 2elf_A 95 GLDAHTGECIIALDLL----GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGT--VLQDWECISLNTNKSAKNPFEGV 167 (370)
T ss_dssp CCCHHHHHHHHHHHHT----TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTS--TTTTCEEEECCCCTTSSSTTTTH
T ss_pred CCcHHHHHHHHHHHHc----CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhc--CCCceEEEecccccccCcCCCCH
Confidence 4455555555554333 5676 88899 9999 543222 222222211 123568999 99999 9999
Q ss_pred HHHHHHHHHHhh
Q 030429 163 DAVIDWLIKHSK 174 (177)
Q Consensus 163 ~~l~~~l~~~~~ 174 (177)
+++++.|.+.+.
T Consensus 168 ~~L~~~l~~~~~ 179 (370)
T 2elf_A 168 DELKARINEVAE 179 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhcc
Confidence 999999988764
No 149
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.90 E-value=2.7e-23 Score=156.82 Aligned_cols=162 Identities=19% Similarity=0.151 Sum_probs=113.5
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcC--------CCCC-----------CCCCccceeEEEEEeCCEEEEEEecCCch
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATG--------GYSE-----------DMIPTVGFNMRKVTKGNVTIKLWDLGGQR 68 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~--------~~~~-----------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 68 (177)
..+..++|+++|++++|||||+++|.+. .+.. ....|.......+..++..+.+|||||++
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA 86 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH
Confidence 3456799999999999999999999862 1111 11224444445566678899999999999
Q ss_pred hhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCcccccC-HH----HHHHHhCcc
Q 030429 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALS-KQ----ALVDQLGLE 142 (177)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~-~~----~~~~~~~~~ 142 (177)
+|...+..++..+|++++|+|+++... .....++..+... ++| +++|+||+|+.+... .+ +..+.+...
T Consensus 87 ~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~----~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 161 (405)
T 2c78_A 87 DYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV----GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQY 161 (405)
T ss_dssp GGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT----TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc----CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHh
Confidence 999888889999999999999988754 3445555544333 577 889999999975221 11 122222211
Q ss_pred cccCCceeEEEeeecCCCC------------------hHHHHHHHHHHhh
Q 030429 143 SITDREVCCYMISCKDSIN------------------IDAVIDWLIKHSK 174 (177)
Q Consensus 143 ~~~~~~~~~~~~Sa~~~~~------------------i~~l~~~l~~~~~ 174 (177)
.+.....+++++||++|.| +++|++.|.+.+.
T Consensus 162 ~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 162 EFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp TSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred cccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 1222346899999999987 8888888887653
No 150
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.90 E-value=3.7e-23 Score=153.57 Aligned_cols=162 Identities=24% Similarity=0.290 Sum_probs=105.1
Q ss_pred ceeE-EEEEcCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEeCCEEEEEEecCCc---------hhhHHhHHHHh
Q 030429 11 QEME-LSLIGLQNAGKTSLVNTIATGGYS--EDMIPTVGFNMRKVTKGNVTIKLWDLGGQ---------RRFRTMWERYC 78 (177)
Q Consensus 11 ~~~~-i~i~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g~---------~~~~~~~~~~~ 78 (177)
..++ |+++|.+|+|||||+|++.+.... .....|.+.....+..++..+.+|||+|. +.+.... ..+
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~ 255 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTL-SEA 255 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHH-HGG
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHH-HHH
Confidence 3455 999999999999999999976652 22344555666777788889999999996 2233333 347
Q ss_pred cCCCEEEEEEeCCCCC--CHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHH--HHHHHhCcccccCCceeEEEe
Q 030429 79 RGVSAILYVVDAADRD--SVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ--ALVDQLGLESITDREVCCYMI 154 (177)
Q Consensus 79 ~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 154 (177)
..+|++++|+|++++. .......+ ..++......+.|+++|+||+|+.+....+ ...+.+... ......+++++
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~~~~-~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~-l~~~~~~~~~~ 333 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETLQSS-FEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKE-LYSPIFDVIPI 333 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHHHHH-HHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHH-HCSCEEEEEEC
T ss_pred HhCCEEEEEEECCCCcchHHHHHHHH-HHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHH-hcCCCCcEEEE
Confidence 8899999999998875 33333322 222222223468999999999997643111 111011000 00123367999
Q ss_pred eecCCCChHHHHHHHHHHhhh
Q 030429 155 SCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 155 Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
||+++.|++++++.|.+.+..
T Consensus 334 SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 334 SALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp BTTTTBSHHHHHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHHHhcc
Confidence 999999999999999987754
No 151
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.90 E-value=2.2e-23 Score=148.72 Aligned_cols=161 Identities=17% Similarity=0.130 Sum_probs=104.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCC-CCCCCC---CccceeEEEEEeCCEEEEEEecCCchhhH-----------Hh
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGG-YSEDMI---PTVGFNMRKVTKGNVTIKLWDLGGQRRFR-----------TM 73 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~-~~~~~~---~t~~~~~~~~~~~~~~~~~~D~~g~~~~~-----------~~ 73 (177)
....++|+++|.+|||||||++++++.. +..... .|..........++..+.+|||||+..+. ..
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 3456899999999999999999999766 333322 23444555667788999999999975542 22
Q ss_pred HHHHhcCCCEEEEEEeCCCCCCHH-HHHHHHHHHHcCCCCCCCcEEEEee-CCCcccccCHHH------------HHHHh
Q 030429 74 WERYCRGVSAILYVVDAADRDSVP-IARSELHELLMKPSLSGIPLLVLGN-KIDKSEALSKQA------------LVDQL 139 (177)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~iiv~n-K~D~~~~~~~~~------------~~~~~ 139 (177)
...+++.+|++++|+|+++..... ....++...... ....|.++++| |+|+... .... +.+.+
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~--~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~ 175 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE--DAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAAC 175 (260)
T ss_dssp HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG--GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHT
T ss_pred HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc--hhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHh
Confidence 234678999999999998622221 122333333221 01356666666 9999753 3333 23333
Q ss_pred CcccccCCceeEEEeeecCCCChHHHHHHHHHHhhh
Q 030429 140 GLESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 140 ~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
+..... +..+++||++|.|++++|+.|.+.+..
T Consensus 176 ~~~~~~---~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 176 GGRICA---FNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp TTCEEE---CCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEE---ecCcccccccHHHHHHHHHHHHHHHHh
Confidence 221100 111789999999999999999998765
No 152
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.90 E-value=9.8e-23 Score=159.13 Aligned_cols=159 Identities=17% Similarity=0.185 Sum_probs=110.9
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcC--CCCC---------------CCCCccceeEEEEEe-----CCEEEEEEecCC
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATG--GYSE---------------DMIPTVGFNMRKVTK-----GNVTIKLWDLGG 66 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~--~~~~---------------~~~~t~~~~~~~~~~-----~~~~~~~~D~~g 66 (177)
.++..+|+++|+.++|||||+++|+.. .... ....|.......+.+ ..+.+++|||||
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPG 82 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPG 82 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCC
Confidence 356689999999999999999999752 1111 011122222223322 237899999999
Q ss_pred chhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccC
Q 030429 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITD 146 (177)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~ 146 (177)
+.+|...+..++..+|++++|+|+++..+......|.... . .+.|+++|+||+|+.+.. .++..+.+... ...
T Consensus 83 h~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~-~----~~ipiIvviNKiDl~~a~-~~~v~~el~~~-lg~ 155 (600)
T 2ywe_A 83 HVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV-E----QDLVIIPVINKIDLPSAD-VDRVKKQIEEV-LGL 155 (600)
T ss_dssp SGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC-HHHHHHHHHHT-SCC
T ss_pred cHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH-H----CCCCEEEEEeccCccccC-HHHHHHHHHHh-hCC
Confidence 9999998888999999999999999988777766655443 2 368999999999997643 33333333211 111
Q ss_pred CceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 147 REVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 147 ~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
....++++||++|.|+++++++|.+.+.
T Consensus 156 ~~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 156 DPEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp CGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CcccEEEEEeecCCCchHHHHHHHHhcc
Confidence 2235899999999999999999998764
No 153
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.90 E-value=7.3e-24 Score=156.50 Aligned_cols=121 Identities=17% Similarity=0.285 Sum_probs=91.5
Q ss_pred CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCC----------CCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 030429 55 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAA----------DRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 124 (177)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~ 124 (177)
+.+.+++|||+|+++++..+..++++++++++|+|++ +..++++...|+..+.......+.|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 4588999999999999999999999999999999998 778899999999998776444679999999999
Q ss_pred CcccccC-----------------------HHHHHHHhCccc-----------ccCCceeEEEeeecCCCChHHHHHHHH
Q 030429 125 DKSEALS-----------------------KQALVDQLGLES-----------ITDREVCCYMISCKDSINIDAVIDWLI 170 (177)
Q Consensus 125 D~~~~~~-----------------------~~~~~~~~~~~~-----------~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 170 (177)
|+.+... .++..+...... ...+.+.+++|||+++.||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9853211 112211111100 002345578999999999999999999
Q ss_pred HHhhh
Q 030429 171 KHSKT 175 (177)
Q Consensus 171 ~~~~~ 175 (177)
+.+.+
T Consensus 341 ~~I~~ 345 (354)
T 2xtz_A 341 ETLRR 345 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87754
No 154
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.90 E-value=3.2e-23 Score=154.83 Aligned_cols=132 Identities=20% Similarity=0.189 Sum_probs=101.1
Q ss_pred ccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCC----------CCCHHHHHHHHHHHHcCCCCC
Q 030429 44 TVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAAD----------RDSVPIARSELHELLMKPSLS 113 (177)
Q Consensus 44 t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~ 113 (177)
|.++....+..+++.+++|||+|+++++..|..++++++++++|+|+++ ..++.+...|+..+.......
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 4455555566778999999999999999999999999999999999999 889999999999998765557
Q ss_pred CCcEEEEeeCCCcccccC--------------------------------HHHHHHHh----Cccc----ccCCceeEEE
Q 030429 114 GIPLLVLGNKIDKSEALS--------------------------------KQALVDQL----GLES----ITDREVCCYM 153 (177)
Q Consensus 114 ~~~~iiv~nK~D~~~~~~--------------------------------~~~~~~~~----~~~~----~~~~~~~~~~ 153 (177)
+.|+++|+||+|+.+... .++..+.. .... ...+.+.+++
T Consensus 284 ~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~ 363 (402)
T 1azs_C 284 TISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF 363 (402)
T ss_dssp SCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEE
T ss_pred CCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEE
Confidence 899999999999743210 11111110 0000 0113456789
Q ss_pred eeecCCCChHHHHHHHHHHhhh
Q 030429 154 ISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 154 ~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
|||+++.||+++|+.+.+.+.+
T Consensus 364 TSA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 364 TCAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEeecCcCHHHHHHHHHHHHHH
Confidence 9999999999999999887654
No 155
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.90 E-value=3.4e-23 Score=157.48 Aligned_cols=153 Identities=13% Similarity=0.079 Sum_probs=104.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCC---CCCC--------------------------------CCCccceeEEEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGG---YSED--------------------------------MIPTVGFNMRKVT 53 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~---~~~~--------------------------------~~~t~~~~~~~~~ 53 (177)
.+..++|+++|.+++|||||+++|++.. +... ..-|.......+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 3556999999999999999999998543 1100 1123333444566
Q ss_pred eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--C
Q 030429 54 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--S 131 (177)
Q Consensus 54 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~ 131 (177)
.++..+.+|||||+++|...+..++..+|++++|+|+++... .....++...... ...|+++|+||+|+.+.. .
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~~~ 176 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL---GIKHIVVAINKMDLNGFDERV 176 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT---TCCEEEEEEECTTTTTSCHHH
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEEcCcCCcccHHH
Confidence 678899999999999999888888999999999999988753 3333444333222 124699999999997632 1
Q ss_pred HHHHHHHhC----cccccCCceeEEEeeecCCCChHHH
Q 030429 132 KQALVDQLG----LESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 132 ~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
.++..+.+. ...+.....+++++||++|.|++++
T Consensus 177 ~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 177 FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 112222221 1111123468999999999999874
No 156
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.90 E-value=6.4e-23 Score=160.39 Aligned_cols=157 Identities=17% Similarity=0.163 Sum_probs=106.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCC--CCC---------------CCCCccceeEEEEEeC-----CEEEEEEecCCch
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGG--YSE---------------DMIPTVGFNMRKVTKG-----NVTIKLWDLGGQR 68 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~--~~~---------------~~~~t~~~~~~~~~~~-----~~~~~~~D~~g~~ 68 (177)
+..||+++|+.++|||||+++|+... ... ....|.......+.+. .+.+++|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 45799999999999999999998521 111 0111222222333322 4889999999999
Q ss_pred hhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCc
Q 030429 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDRE 148 (177)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 148 (177)
+|...+..++..+|++++|+|+++..+......|.... . .++|+++|+||+|+.+.. .++..+.+... .....
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~-~----~~ipiIvViNKiDl~~a~-~~~v~~ei~~~-lg~~~ 155 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM-E----MDLEVVPVLNKIDLPAAD-PERVAEEIEDI-VGIDA 155 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC-HHHHHHHHHHH-TCCCC
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEeeeccCccccc-HHHHHHHHHHH-hCCCc
Confidence 99999999999999999999999988777766665544 2 268999999999997643 33322222111 11112
Q ss_pred eeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 149 VCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 149 ~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
..++++||++|.|+++++++|.+.+.
T Consensus 156 ~~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 156 TDAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp TTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred ceEEEeecccCCCchhHHHHHhhcCC
Confidence 24899999999999999999998765
No 157
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.90 E-value=1.1e-22 Score=157.49 Aligned_cols=116 Identities=20% Similarity=0.208 Sum_probs=89.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcC-----------------CCC-------CCCCCccceeEEEEEeCCEEEEEEec
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATG-----------------GYS-------EDMIPTVGFNMRKVTKGNVTIKLWDL 64 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~-----------------~~~-------~~~~~t~~~~~~~~~~~~~~~~~~D~ 64 (177)
..+..+|+++|.+|+|||||+++|+.. ... .....|.......+..+++.+++|||
T Consensus 10 ~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDT 89 (528)
T 3tr5_A 10 TAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDT 89 (528)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECC
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEEC
Confidence 456789999999999999999999611 000 01223555566677888999999999
Q ss_pred CCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030429 65 GGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 65 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 129 (177)
||+.+|......++..+|++++|+|+++........ .+..... .++|+++|+||+|+...
T Consensus 90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~-~~~~~~~----~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK-LMEVCRL----RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH-HHHHHHT----TTCCEEEEEECTTSCCS
T ss_pred CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEeCCCCccc
Confidence 999999999999999999999999999876665544 3333333 36899999999999653
No 158
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.90 E-value=7.9e-24 Score=160.96 Aligned_cols=153 Identities=18% Similarity=0.161 Sum_probs=101.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcC--CCCC-------------------------------CCCCccceeEEEEEeC
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATG--GYSE-------------------------------DMIPTVGFNMRKVTKG 55 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~--~~~~-------------------------------~~~~t~~~~~~~~~~~ 55 (177)
.+..++|+++|++++|||||+++|+.. .+.. ....|.......++.+
T Consensus 3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~ 82 (435)
T 1jny_A 3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK 82 (435)
T ss_dssp -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC
Confidence 356789999999999999999999853 2221 1223444555566778
Q ss_pred CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHH-------HHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 56 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIA-------RSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
+..+.+|||||+.+|...+..++..+|++++|+|+++ .+++.. ...+...... ...|+++|+||+|+.+
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM---GLDQLIVAVNKMDLTE 158 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT---TCTTCEEEEECGGGSS
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc---CCCeEEEEEEcccCCC
Confidence 8999999999999999988899999999999999988 555532 2222222222 1246899999999976
Q ss_pred cc----CHH----HHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 129 AL----SKQ----ALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 129 ~~----~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
.. ..+ ++.+.+....+....++++++||++|.|+.++
T Consensus 159 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 159 PPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp STTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred ccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 21 112 22222221122222468999999999999754
No 159
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.90 E-value=5.2e-23 Score=154.84 Aligned_cols=159 Identities=16% Similarity=0.094 Sum_probs=110.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCC-------CCC-----------CCCCccceeEEEEEeCCEEEEEEecCCchhhHH
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGG-------YSE-----------DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT 72 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~-------~~~-----------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 72 (177)
..+||+++|++++|||||+++|.+.. +.. ....|.......+..++..+.+|||||+.+|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 56899999999999999999998531 110 112233333344556778999999999999988
Q ss_pred hHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCcccccC-H----HHHHHHhCcccccC
Q 030429 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALS-K----QALVDQLGLESITD 146 (177)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~-~----~~~~~~~~~~~~~~ 146 (177)
.+..++..+|++++|+|+++...... ..++..+.. .++| +++|+||+|+.+... . ++..+.+....+..
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 156 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG 156 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 88888999999999999988654433 334433322 2677 689999999975221 1 12222222112222
Q ss_pred CceeEEEeeecCCCC----------hHHHHHHHHHHhh
Q 030429 147 REVCCYMISCKDSIN----------IDAVIDWLIKHSK 174 (177)
Q Consensus 147 ~~~~~~~~Sa~~~~~----------i~~l~~~l~~~~~ 174 (177)
...+++++||++|.| +++|++.|.+.+.
T Consensus 157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 346899999999764 8999999988654
No 160
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.90 E-value=3.7e-25 Score=170.74 Aligned_cols=160 Identities=18% Similarity=0.171 Sum_probs=113.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEEe-CCEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTK-GNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
++..+|+++|++++|||||+++|.+..+.....+ |..+....+.. ++..+.+|||||++.|...+..++..+|++++
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 4678999999999999999999986544322222 22233333333 45689999999999999888888999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcc-cccCCceeEEEeeecCCCChH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLE-SITDREVCCYMISCKDSINID 163 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
|+|+++........ .+..+.. .++|+++|+||+|+.+.. ........+... .......+++++||++|.|++
T Consensus 82 VVDa~dg~~~qt~e-~l~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~ 156 (537)
T 3izy_P 82 VVAADDGVMKQTVE-SIQHAKD----AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMM 156 (537)
T ss_dssp ECBSSSCCCHHHHH-HHHHHHT----TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSH
T ss_pred EEECCCCccHHHHH-HHHHHHH----cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCch
Confidence 99998876554433 3333322 368999999999997532 112222222211 112235689999999999999
Q ss_pred HHHHHHHHHhh
Q 030429 164 AVIDWLIKHSK 174 (177)
Q Consensus 164 ~l~~~l~~~~~ 174 (177)
+++++|...+.
T Consensus 157 eLle~I~~l~~ 167 (537)
T 3izy_P 157 ALAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHHT
T ss_pred hHHHHHHHhhh
Confidence 99999998764
No 161
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.89 E-value=1.6e-23 Score=160.21 Aligned_cols=151 Identities=23% Similarity=0.272 Sum_probs=104.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEeCCEEEEEEecCC--------chhhHHhHHHHhcC
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGG--------QRRFRTMWERYCRG 80 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g--------~~~~~~~~~~~~~~ 80 (177)
..+|+++|.+|||||||+|+|++..+. .....|...........+..+.+||||| ++.+......++..
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 102 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 102 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhh
Confidence 468999999999999999999976543 1122233333444556678999999999 77788888888999
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCC
Q 030429 81 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSI 160 (177)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (177)
+|++++|+|+.+. +.....++..++.. .++|+++|+||+|+.+... ...+ .+.......+++||++|.
T Consensus 103 ad~il~VvD~~~~--~~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~~--~~~e-----~~~lg~~~~~~iSA~~g~ 170 (456)
T 4dcu_A 103 ADVIIFMVNGREG--VTAADEEVAKILYR---TKKPVVLAVNKLDNTEMRA--NIYD-----FYSLGFGEPYPISGTHGL 170 (456)
T ss_dssp CSEEEEEEESSSC--SCHHHHHHHHHHTT---CCSCEEEEEECC-----------CC-----SGGGSSSSEEECCTTTCT
T ss_pred CCEEEEEEeCCCC--CChHHHHHHHHHHH---cCCCEEEEEECccchhhhh--hHHH-----HHHcCCCceEEeeccccc
Confidence 9999999998664 44445566666554 5789999999999864321 1111 111112246799999999
Q ss_pred ChHHHHHHHHHHhh
Q 030429 161 NIDAVIDWLIKHSK 174 (177)
Q Consensus 161 ~i~~l~~~l~~~~~ 174 (177)
|++++++.+.+.+.
T Consensus 171 gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 171 GLGDLLDAVAEHFK 184 (456)
T ss_dssp THHHHHHHHHTTGG
T ss_pred chHHHHHHHHhhcc
Confidence 99999999988764
No 162
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.8e-24 Score=146.02 Aligned_cols=126 Identities=23% Similarity=0.325 Sum_probs=93.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcC----C
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSED---MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRG----V 81 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~----~ 81 (177)
....++|+++|++|||||||++++.+..+... ..++.. .......+.+|||||+..+...+..++.. +
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 119 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA-----ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 119 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee-----eeecCCeEEEEECCCCchHHHHHHHHHHhhcccC
Confidence 35678999999999999999999998765442 111211 12256789999999998887666666654 8
Q ss_pred CEEEEEEeCC-CCCCHHHHHHHHHHHHcCC---CCCCCcEEEEeeCCCcccccCHHHHHHHh
Q 030429 82 SAILYVVDAA-DRDSVPIARSELHELLMKP---SLSGIPLLVLGNKIDKSEALSKQALVDQL 139 (177)
Q Consensus 82 d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~iiv~nK~D~~~~~~~~~~~~~~ 139 (177)
|++++|+|++ ++.++.....|+..+.... ...+.|+++|+||+|+.+....++..+.+
T Consensus 120 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 120 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp EEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred CEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 9999999999 7788888888887776432 12478999999999998876665555544
No 163
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.89 E-value=2.5e-22 Score=145.88 Aligned_cols=158 Identities=17% Similarity=0.172 Sum_probs=101.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCC------CCc----------------------cc---------------
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDM------IPT----------------------VG--------------- 46 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~------~~t----------------------~~--------------- 46 (177)
....+|+++|.+|+|||||+|+|++..+.+.. .++ ..
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 35679999999999999999999987763211 111 00
Q ss_pred -----------eeEEEEEeCCEEEEEEecCCch-------------hhHHhHHHHhcCCCEEE-EEEeCCCCCCHHHHHH
Q 030429 47 -----------FNMRKVTKGNVTIKLWDLGGQR-------------RFRTMWERYCRGVSAIL-YVVDAADRDSVPIARS 101 (177)
Q Consensus 47 -----------~~~~~~~~~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~~~~~~~~ 101 (177)
............+.+|||||.. .+......++..++.++ +|+|+++..+......
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 0000011124789999999953 35566677888888666 7999987544433333
Q ss_pred HHHHHHcCCCCCCCcEEEEeeCCCcccccC-HHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHHH
Q 030429 102 ELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 172 (177)
Q Consensus 102 ~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 172 (177)
++..+ .. .+.|+++|+||+|+.+... ..+..+.. .........+++++||++|.|+++++++|.+.
T Consensus 184 ~~~~~-~~---~~~~~i~V~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 184 IAKEV-DP---QGQRTIGVITKLDLMDEGTDARDVLENK-LLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHH-CT---TCSSEEEEEECGGGSCTTCCCHHHHTTC-SSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHHh-CC---CCCeEEEEEEccccCCCCchHHHHHhCC-cCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 33333 22 4689999999999976433 12222110 01111123578899999999999999998763
No 164
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.89 E-value=5.2e-22 Score=140.59 Aligned_cols=165 Identities=13% Similarity=0.062 Sum_probs=100.7
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC----CccceeEEEEEeCCEEEEEEecCCc--------hhhHHhHH
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMI----PTVGFNMRKVTKGNVTIKLWDLGGQ--------RRFRTMWE 75 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~g~--------~~~~~~~~ 75 (177)
.....++|+++|.+|+|||||+|++++........ .|..........++..+.+|||||. ..+.....
T Consensus 17 ~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 17 QGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp ---CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred cCCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHH
Confidence 34567999999999999999999999876543322 3445556667788999999999995 33333333
Q ss_pred HHh----cCCCEEEEEEeCCCCCCHH-HHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHH-----hCccccc
Q 030429 76 RYC----RGVSAILYVVDAADRDSVP-IARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQ-----LGLESIT 145 (177)
Q Consensus 76 ~~~----~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~-----~~~~~~~ 145 (177)
.++ .++|++++|+|+++....+ ....++...... ...+.|++++.||+|+.+. ..++..+. +... ..
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~-~~~~~~iilv~nK~Dl~~~-~~~~~l~~~~~~~l~~l-~~ 173 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGE-DVLKWMVIVFTRKEDLAGG-SLHDYVSNTENRALREL-VA 173 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCG-GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHH-HH
T ss_pred HHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhCh-hhhccEEEEEEchHhcCCC-CHHHHHhhcccHHHHHH-HH
Confidence 333 8999999999997532111 112333333221 1125799999999999653 22222211 1000 00
Q ss_pred CCceeEEEeeec-----CCCChHHHHHHHHHHhhh
Q 030429 146 DREVCCYMISCK-----DSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 146 ~~~~~~~~~Sa~-----~~~~i~~l~~~l~~~~~~ 175 (177)
..+..++..+.. .+.|+++|++.|.+++.+
T Consensus 174 ~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 174 ECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 001124333332 268999999999998874
No 165
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.89 E-value=1e-22 Score=146.34 Aligned_cols=158 Identities=18% Similarity=0.262 Sum_probs=88.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCC-CC-------CCccceeEEEEE--eCC--EEEEEEecCCch-------hh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSE-DM-------IPTVGFNMRKVT--KGN--VTIKLWDLGGQR-------RF 70 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~-------~~t~~~~~~~~~--~~~--~~~~~~D~~g~~-------~~ 70 (177)
...++|+++|.+|+|||||+|++++..... .+ .+|.+....... .++ +.+.+|||||.. .+
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 346899999999999999999987655432 22 455555554433 223 689999999962 22
Q ss_pred HHhH-------HHHhc-------------CCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc
Q 030429 71 RTMW-------ERYCR-------------GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 130 (177)
Q Consensus 71 ~~~~-------~~~~~-------------~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~ 130 (177)
.... ..++. .+|+++++++.+..........++..+ .. ++|+++|+||+|+....
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l-~~----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL-HE----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHH-TT----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHH-hc----cCCEEEEEeccCCCCHH
Confidence 2222 22222 267999999876543333333344443 32 68999999999997654
Q ss_pred CHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHHHh
Q 030429 131 SKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 173 (177)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 173 (177)
+.....+.+.. .....+++++++|++++.|+++++++|.+.+
T Consensus 161 e~~~~~~~i~~-~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 161 ECQQFKKQIMK-EIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHH-HHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHH-HHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 44333332221 1112344688899999999999999998764
No 166
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.89 E-value=4.2e-22 Score=140.45 Aligned_cols=157 Identities=14% Similarity=0.119 Sum_probs=100.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC----CccceeEEEEEeCCEEEEEEecCCc-----------hhhHHh
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMI----PTVGFNMRKVTKGNVTIKLWDLGGQ-----------RRFRTM 73 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~g~-----------~~~~~~ 73 (177)
....++|+++|.+|+|||||++++++..+..... .|..........++..+.+|||||. ..+...
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~ 105 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRC 105 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence 3567999999999999999999999877644432 3444555667788899999999993 344444
Q ss_pred HHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-CCCCcEEEEeeCCCcccccCHHH-----------HHHHhCc
Q 030429 74 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSEALSKQA-----------LVDQLGL 141 (177)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nK~D~~~~~~~~~-----------~~~~~~~ 141 (177)
.....+++|++++|+|+++.... ...++..+..... ....|+++|+||+|+.+....++ +.+..+.
T Consensus 106 ~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~ 183 (239)
T 3lxx_A 106 ILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD 183 (239)
T ss_dssp HHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSS
T ss_pred HHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC
Confidence 45556788999999999765442 2233333322110 02359999999999876543321 2222211
Q ss_pred ccccCCceeEEEeeec-----CCCChHHHHHHHHHHhhh
Q 030429 142 ESITDREVCCYMISCK-----DSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 142 ~~~~~~~~~~~~~Sa~-----~~~~i~~l~~~l~~~~~~ 175 (177)
.++.++.. +..++.++++.+.+++.+
T Consensus 184 --------~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 184 --------RYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp --------SEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------EEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 34555444 346899999999887754
No 167
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.88 E-value=2e-22 Score=164.94 Aligned_cols=162 Identities=17% Similarity=0.094 Sum_probs=110.8
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCC-------CC-----------CCCCCccceeEEEEEeCCEEEEEEecCCchh
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGG-------YS-----------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR 69 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~-------~~-----------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 69 (177)
..+..++|+++|++++|||||+++|.+.. +. .....|.......+..++..+.+|||||+++
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence 34567999999999999999999998531 00 0111233333344566778999999999999
Q ss_pred hHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCcccccCH-----HHHHHHhCccc
Q 030429 70 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALSK-----QALVDQLGLES 143 (177)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~-----~~~~~~~~~~~ 143 (177)
|...+..++..+|++++|+|+++....+ ...++..+.. .++| +++|+||+|+.+.... ++..+.+....
T Consensus 372 F~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G 446 (1289)
T 3avx_A 372 YVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYD 446 (1289)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcc
Confidence 9988888899999999999998865433 3344443332 2577 7899999999753211 12222222222
Q ss_pred ccCCceeEEEeeecCC--------CChHHHHHHHHHHhh
Q 030429 144 ITDREVCCYMISCKDS--------INIDAVIDWLIKHSK 174 (177)
Q Consensus 144 ~~~~~~~~~~~Sa~~~--------~~i~~l~~~l~~~~~ 174 (177)
+....++++++||++| .|++++++.|.+.+.
T Consensus 447 ~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 447 FPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp SCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 2223568999999999 468999999987653
No 168
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.88 E-value=3e-23 Score=163.07 Aligned_cols=153 Identities=13% Similarity=0.089 Sum_probs=104.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCC---------------------------------CCCccceeEEEEEeCC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSED---------------------------------MIPTVGFNMRKVTKGN 56 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~---------------------------------~~~t~~~~~~~~~~~~ 56 (177)
+..++|+++|.+++|||||+++|++...... ...|.......+..++
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 5579999999999999999999985422111 2335555666677888
Q ss_pred EEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCC---CH---HHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc
Q 030429 57 VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD---SV---PIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 130 (177)
Q Consensus 57 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~ 130 (177)
..+.+|||||+++|...+..++..+|++++|+|+++.. ++ ......+... ... ...|+++|+||+|+.+..
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~-~~l--gi~~iIVVvNKiDl~~~~ 321 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-SSL--GIHNLIIAMNKMDNVDWS 321 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHH-HTT--TCCEEEEEEECTTTTTTC
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHH-HHc--CCCeEEEEEecccccchh
Confidence 99999999999999988888999999999999997631 11 1222222222 221 234699999999997621
Q ss_pred --CHHHHHHHh----CcccccCCceeEEEeeecCCCChHHH
Q 030429 131 --SKQALVDQL----GLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 131 --~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
..++..+.+ ....+....++++++||++|.|++++
T Consensus 322 ~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 322 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 112222222 11112223568999999999999865
No 169
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.88 E-value=2.4e-22 Score=157.27 Aligned_cols=159 Identities=21% Similarity=0.249 Sum_probs=106.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCC----CCCCccceeEEEEE----------------eCCEEEEEEecCCchhh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSE----DMIPTVGFNMRKVT----------------KGNVTIKLWDLGGQRRF 70 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~----~~~~t~~~~~~~~~----------------~~~~~~~~~D~~g~~~~ 70 (177)
+..+|+++|++++|||||++++.+..+.. ...++.+....... .....+++|||||+..|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 46799999999999999999998654322 12233333333211 11236999999999999
Q ss_pred HHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--------------HH---
Q 030429 71 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--------------KQ--- 133 (177)
Q Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--------------~~--- 133 (177)
......++..+|++++|+|+++.-..... ..+..+.. .++|+++|+||+|+.+... .+
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~-e~l~~l~~----~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~ 158 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQ-EALNILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQ 158 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHH-HHHHHHHH----cCCeEEEEecccccccccccccCCchHHHHHHhHHHHH
Confidence 88877788899999999999885332222 22222322 3789999999999964211 00
Q ss_pred --------HHHHHhCcccc----------cCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 134 --------ALVDQLGLESI----------TDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 134 --------~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
+..+.+..... .....+++++||++|.|+++|+++|...+.
T Consensus 159 ~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 159 QKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 11111211110 124568999999999999999999988654
No 170
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.87 E-value=1.2e-22 Score=155.30 Aligned_cols=152 Identities=16% Similarity=0.192 Sum_probs=104.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC--CCCC-------------------------------CCCCccceeEEEEEeCC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATG--GYSE-------------------------------DMIPTVGFNMRKVTKGN 56 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~--~~~~-------------------------------~~~~t~~~~~~~~~~~~ 56 (177)
+..++|+++|.+++|||||+++|++. .+.. ....|.......+..++
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 45689999999999999999999853 1211 12345566666777888
Q ss_pred EEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCC---CHH---HHHHHHHHHHcCCCCCCCc-EEEEeeCCCcccc
Q 030429 57 VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD---SVP---IARSELHELLMKPSLSGIP-LLVLGNKIDKSEA 129 (177)
Q Consensus 57 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~ 129 (177)
..+.+|||||+++|...+..++..+|++++|+|+++.. +|+ .....+..... .++| +++|+||+|+.+.
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~~iivviNK~Dl~~~ 160 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVKW 160 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGTT
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCCeEEEEEEccccccC
Confidence 99999999999999998888999999999999997642 111 22333332222 2455 9999999999742
Q ss_pred --cCHHHHHHHhC----cccccCCceeEEEeeecCCCChHHH
Q 030429 130 --LSKQALVDQLG----LESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 130 --~~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+..++..+.+. ...+....++++++||++|.|++++
T Consensus 161 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 161 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 11122222221 1111112468999999999998743
No 171
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.87 E-value=7.4e-24 Score=162.31 Aligned_cols=157 Identities=24% Similarity=0.275 Sum_probs=108.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMI--PTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
++..+|+++|++++|||||++++.+..+..... .|.......+..++..+.+|||||++.|...+...+..+|++++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 467899999999999999999998654432221 222233333445667899999999999988887888899999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccc----cCCceeEEEeeecCCCChH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI----TDREVCCYMISCKDSINID 163 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~i~ 163 (177)
+|+++...... ...+..... .+.|+++++||+|+.+... ++..+.+..... .....+++++||++|.|++
T Consensus 82 Vda~~g~~~qT-~e~l~~~~~----~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~ 155 (501)
T 1zo1_I 82 VAADDGVMPQT-IEAIQHAKA----AQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID 155 (501)
T ss_dssp EETTTBSCTTT-HHHHHHHHH----TTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCT
T ss_pred eecccCccHHH-HHHHHHHHh----cCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcc
Confidence 99987432222 222222222 3689999999999975321 111122211111 1123689999999999999
Q ss_pred HHHHHHHHH
Q 030429 164 AVIDWLIKH 172 (177)
Q Consensus 164 ~l~~~l~~~ 172 (177)
+++++|...
T Consensus 156 eLle~I~~~ 164 (501)
T 1zo1_I 156 ELLDAILLQ 164 (501)
T ss_dssp THHHHTTTT
T ss_pred hhhhhhhhh
Confidence 999998753
No 172
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.87 E-value=1.4e-21 Score=134.94 Aligned_cols=160 Identities=19% Similarity=0.184 Sum_probs=99.5
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEeCCEEEEEEecCCchh----------hHHhH
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGNVTIKLWDLGGQRR----------FRTMW 74 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~g~~~----------~~~~~ 74 (177)
+......+|+++|++|||||||++++++..+.....++.+... ..+..++ .+.+||+||... +....
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 5677889999999999999999999986653322233333221 1222223 578999999732 33333
Q ss_pred HHHh---cCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHH----HHHHHhCcccccCC
Q 030429 75 ERYC---RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ----ALVDQLGLESITDR 147 (177)
Q Consensus 75 ~~~~---~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~----~~~~~~~~~~~~~~ 147 (177)
..++ ..++++++++|++++.+.... .+..+... .+.|++++.||+|+.+..+.+ ...+.+.. ...
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~---~~~ 171 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLA---FNG 171 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGG---GCS
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHh---cCC
Confidence 3444 568999999999887665321 12222222 368999999999987643222 12222211 112
Q ss_pred ceeEEEeeecCCCChHHHHHHHHHHhhh
Q 030429 148 EVCCYMISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 148 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
...++++|++++.|++++++.|.+.+.+
T Consensus 172 ~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 172 DVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred CCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 4578899999999999999999887654
No 173
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.87 E-value=4.3e-21 Score=152.92 Aligned_cols=124 Identities=19% Similarity=0.174 Sum_probs=92.5
Q ss_pred CceeecccccceeEEEEEcCCCCCHHHHHHHHhcC--CC------CC------------CCCCccceeEEEEEeCCEEEE
Q 030429 1 MYLHISLFFKQEMELSLIGLQNAGKTSLVNTIATG--GY------SE------------DMIPTVGFNMRKVTKGNVTIK 60 (177)
Q Consensus 1 m~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~--~~------~~------------~~~~t~~~~~~~~~~~~~~~~ 60 (177)
|.........+..+|+++|++|+|||||+++|+.. .+ .. ....|.......+..+++.++
T Consensus 1 M~~~l~~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~ 80 (691)
T 1dar_A 1 MAVKVEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRIN 80 (691)
T ss_dssp CCTTCCCCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEE
T ss_pred CCccccCccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEE
Confidence 44444455677899999999999999999999831 11 00 223455555666777899999
Q ss_pred EEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030429 61 LWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 61 ~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 129 (177)
+|||||+.+|......++..+|++++|+|+++.........|. .+... +.|+++|+||+|+...
T Consensus 81 liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~-~~~~~----~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 81 IIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEKY----KVPRIAFANKMDKTGA 144 (691)
T ss_dssp EECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHHT----TCCEEEEEECTTSTTC
T ss_pred EEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHH-HHHHc----CCCEEEEEECCCcccC
Confidence 9999999999998899999999999999999987776655443 33332 7899999999998764
No 174
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.87 E-value=1e-20 Score=146.55 Aligned_cols=117 Identities=21% Similarity=0.246 Sum_probs=85.0
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCC--CC----------------------CCCCCccceeEEEEEeCCEEEEEEe
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGG--YS----------------------EDMIPTVGFNMRKVTKGNVTIKLWD 63 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~--~~----------------------~~~~~t~~~~~~~~~~~~~~~~~~D 63 (177)
...+..+|+++|++|+|||||+++|+... .. .....+.......+..+++.+++||
T Consensus 9 ~~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liD 88 (529)
T 2h5e_A 9 EVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLD 88 (529)
T ss_dssp HHHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEEC
T ss_pred hhcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEE
Confidence 34577999999999999999999998531 10 0111133334455677889999999
Q ss_pred cCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030429 64 LGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 129 (177)
|||+.+|......++..+|++++|+|+++..... ....+... . ..++|+++|+||+|+...
T Consensus 89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~-~---~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVT-R---LRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHH-T---TTTCCEEEEEECTTSCCS
T ss_pred CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHH-H---HcCCCEEEEEcCcCCccc
Confidence 9999999888888999999999999998864322 22233322 2 247899999999999764
No 175
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.87 E-value=1.1e-22 Score=155.89 Aligned_cols=155 Identities=20% Similarity=0.193 Sum_probs=90.6
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhc--CCCC-------------------------------CCCCCccceeEEEEEe
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIAT--GGYS-------------------------------EDMIPTVGFNMRKVTK 54 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~--~~~~-------------------------------~~~~~t~~~~~~~~~~ 54 (177)
..+..++|+++|.+++|||||+++|+. +.+. +....|+......+..
T Consensus 39 ~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~ 118 (467)
T 1r5b_A 39 YGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET 118 (467)
T ss_dssp SCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC
T ss_pred cCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec
Confidence 346679999999999999999999974 1111 0123344444455667
Q ss_pred CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCC---CHH---HHHHHHHHHHcCCCCCCCc-EEEEeeCCCcc
Q 030429 55 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD---SVP---IARSELHELLMKPSLSGIP-LLVLGNKIDKS 127 (177)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~ 127 (177)
++..+.+|||||+++|...+...+..+|++++|+|+++.. +|+ .....+..... .++| +++|+||+|+.
T Consensus 119 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~----~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 119 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART----QGINHLVVVINKMDEP 194 (467)
T ss_dssp SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH----TTCSSEEEEEECTTST
T ss_pred CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH----cCCCEEEEEEECccCC
Confidence 7899999999999999988888899999999999998752 222 12222222222 2566 99999999996
Q ss_pred ccc-C---HH----HHHHHhCcc-ccc-CCceeEEEeeecCCCChHHHH
Q 030429 128 EAL-S---KQ----ALVDQLGLE-SIT-DREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 128 ~~~-~---~~----~~~~~~~~~-~~~-~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
+.. . .+ ++.+.+... .+. ...++++++||++|.|+++++
T Consensus 195 ~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 195 SVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 421 1 11 122222111 111 125689999999999998754
No 176
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.86 E-value=6.8e-21 Score=151.88 Aligned_cols=163 Identities=17% Similarity=0.169 Sum_probs=106.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccc-ee----------EEEE------------------------
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSE-DMIPTVG-FN----------MRKV------------------------ 52 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~t~~-~~----------~~~~------------------------ 52 (177)
.+..++|+++|.+|+|||||+|+|++..+.. ...+++. .. ...+
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 3567999999999999999999999766432 2222221 00 0000
Q ss_pred --------------------EeCC----EEEEEEecCCchhh---HHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHH
Q 030429 53 --------------------TKGN----VTIKLWDLGGQRRF---RTMWERYCRGVSAILYVVDAADRDSVPIARSELHE 105 (177)
Q Consensus 53 --------------------~~~~----~~~~~~D~~g~~~~---~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 105 (177)
.... ..+.+|||||.... ......++..+|++++|+|++++.+..+...+...
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~ 225 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENY 225 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHH
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHH
Confidence 0000 35899999996653 34555678899999999999988777765544333
Q ss_pred HHcCCCCCCCcEEEEeeCCCccccc-----CHHH-------HH----HHhCccc----ccCCceeEEEeeec--------
Q 030429 106 LLMKPSLSGIPLLVLGNKIDKSEAL-----SKQA-------LV----DQLGLES----ITDREVCCYMISCK-------- 157 (177)
Q Consensus 106 ~~~~~~~~~~~~iiv~nK~D~~~~~-----~~~~-------~~----~~~~~~~----~~~~~~~~~~~Sa~-------- 157 (177)
+ .. .+.|+++|+||+|+.... +.++ +. ..+.... +.....+++++||+
T Consensus 226 l-~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~ 301 (695)
T 2j69_A 226 I-KG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLK 301 (695)
T ss_dssp T-TT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHH
T ss_pred H-Hh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhcc
Confidence 3 22 357899999999986542 1111 11 1121110 00123468999999
Q ss_pred ------CCCChHHHHHHHHHHhhh
Q 030429 158 ------DSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 158 ------~~~~i~~l~~~l~~~~~~ 175 (177)
++.|++++++.|.+.+.+
T Consensus 302 ~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 302 NPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp CTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred CchhhhhccCHHHHHHHHHHHHHH
Confidence 999999999999887653
No 177
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.86 E-value=4.6e-21 Score=140.17 Aligned_cols=161 Identities=19% Similarity=0.148 Sum_probs=98.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccc-e---eEE----------------------------------
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYS-EDMIPTVG-F---NMR---------------------------------- 50 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~t~~-~---~~~---------------------------------- 50 (177)
....+|+++|.+|+|||||+|++++..+. ........ . ...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 34579999999999999999999987652 21110000 0 000
Q ss_pred -----------------------EEEeCCEEEEEEecCCchh-------------hHHhHHHHhcCCCEEEEEEeCCCCC
Q 030429 51 -----------------------KVTKGNVTIKLWDLGGQRR-------------FRTMWERYCRGVSAILYVVDAADRD 94 (177)
Q Consensus 51 -----------------------~~~~~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~ 94 (177)
-.......+.+|||||..+ +......++..+|++++|+|.++..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 0112346799999999643 4455667889999999999985433
Q ss_pred CHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCccccc--CCceeEEEeeecC---CCChHHHHHHH
Q 030429 95 SVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESIT--DREVCCYMISCKD---SINIDAVIDWL 169 (177)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~---~~~i~~l~~~l 169 (177)
........+...+.. .+.|+++|+||+|+.+... ...+.+...... ....++..+|+.+ +.|++++++.+
T Consensus 182 ~~~~~~~~i~~~~~~---~~~~~i~v~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~ 256 (315)
T 1jwy_B 182 LANSDALQLAKEVDP---EGKRTIGVITKLDLMDKGT--DAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSE 256 (315)
T ss_dssp STTCSHHHHHHHHCS---SCSSEEEEEECTTSSCSSC--CCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHH
T ss_pred hhhhHHHHHHHHhCC---CCCcEEEEEcCcccCCcch--HHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHH
Confidence 221111122222232 4689999999999976543 112222211111 2233445566666 89999999998
Q ss_pred HHHhhh
Q 030429 170 IKHSKT 175 (177)
Q Consensus 170 ~~~~~~ 175 (177)
.+.+..
T Consensus 257 ~~~~~~ 262 (315)
T 1jwy_B 257 ILYFKN 262 (315)
T ss_dssp HHHHHT
T ss_pred HHHHhC
Confidence 887754
No 178
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.86 E-value=3.6e-23 Score=162.16 Aligned_cols=161 Identities=19% Similarity=0.144 Sum_probs=90.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCC--CC-------------------------------CCCCCccceeEEEEEeC
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGG--YS-------------------------------EDMIPTVGFNMRKVTKG 55 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~--~~-------------------------------~~~~~t~~~~~~~~~~~ 55 (177)
.+..++|+++|.+++|||||+++|+... .. .....|.......+..+
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 4567899999999999999999996310 00 01122444444455566
Q ss_pred CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCC---CH---HHHHHHHHHHHcCCCCCCCc-EEEEeeCCCccc
Q 030429 56 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD---SV---PIARSELHELLMKPSLSGIP-LLVLGNKIDKSE 128 (177)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~ 128 (177)
+..+.+|||||+.+|...+..++..+|++++|+|+++.. .+ ......+..+... ++| +++|+||+|+.+
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l----gip~iIvviNKiDl~~ 329 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL----GISEIVVSVNKLDLMS 329 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS----SCCCEEEEEECGGGGT
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc----CCCeEEEEEecccccc
Confidence 789999999999999877777888999999999998643 11 1222222222222 454 999999999976
Q ss_pred c--cCHH----HHHHHh-CcccccCCceeEEEeeecCCCChH--------------HHHHHHHHHh
Q 030429 129 A--LSKQ----ALVDQL-GLESITDREVCCYMISCKDSINID--------------AVIDWLIKHS 173 (177)
Q Consensus 129 ~--~~~~----~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~--------------~l~~~l~~~~ 173 (177)
. ...+ ++.+.+ ....+....++++++||++|.|++ .|++.|...+
T Consensus 330 ~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~ 395 (592)
T 3mca_A 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV 395 (592)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred ccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence 2 1122 233333 222233345689999999999998 7888876643
No 179
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.85 E-value=6.8e-20 Score=145.57 Aligned_cols=116 Identities=21% Similarity=0.142 Sum_probs=86.7
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCC-------------CC-------CCCccceeEEEEEeCCEEEEEEecCC
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYS-------------ED-------MIPTVGFNMRKVTKGNVTIKLWDLGG 66 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-------------~~-------~~~t~~~~~~~~~~~~~~~~~~D~~g 66 (177)
+..++..+|+++|+.|+|||||++++++.... .. ...+.......+...++.+++|||||
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG 83 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPG 83 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCC
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCC
Confidence 44567789999999999999999999842211 00 11233344555667889999999999
Q ss_pred chhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030429 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127 (177)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 127 (177)
+.+|......++..+|++++|+|+++..... ...++...... ++|+++|+||+|+.
T Consensus 84 ~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~~----~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 84 YGDFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAERL----GLPRMVVVTKLDKG 139 (665)
T ss_dssp SGGGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHHT----TCCEEEEEECGGGC
T ss_pred ccchHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHHc----cCCEEEEecCCchh
Confidence 9999988889999999999999987764433 33444444333 68999999999987
No 180
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.85 E-value=8.4e-22 Score=146.40 Aligned_cols=160 Identities=16% Similarity=0.229 Sum_probs=80.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCC-CCC--------CCccceeEEEE--EeCC--EEEEEEecCCc-------h
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYS-EDM--------IPTVGFNMRKV--TKGN--VTIKLWDLGGQ-------R 68 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~--------~~t~~~~~~~~--~~~~--~~~~~~D~~g~-------~ 68 (177)
....++|+++|++|+|||||++++++.... ... .+|.+...... ..++ ..+.+|||||. +
T Consensus 34 ~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e 113 (361)
T 2qag_A 34 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 113 (361)
T ss_dssp HCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC------------
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHH
Confidence 345689999999999999999998754322 221 13333333322 2233 47999999998 4
Q ss_pred hhHHhHH-------HHhcCC-------------CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 69 RFRTMWE-------RYCRGV-------------SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 69 ~~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
.+..... .++..+ |+++++++.+ ..++......+...+. .++|+++|+||+|+..
T Consensus 114 ~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~~ 188 (361)
T 2qag_A 114 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTLT 188 (361)
T ss_dssp --CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCCC
Confidence 4444443 333322 3455555532 4455555544433332 4789999999999976
Q ss_pred ccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHHHhhh
Q 030429 129 ALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
..+.....+... ......+++++++||+++.+ ++.|..+.+.+.+
T Consensus 189 ~~ev~~~k~~i~-~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~ 233 (361)
T 2qag_A 189 LKERERLKKRIL-DEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKA 233 (361)
T ss_dssp HHHHHHHHHHHH-HHTTCC-CCSCCCC----------CHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence 543322212221 11222346889999999998 7777777776543
No 181
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.84 E-value=1.9e-20 Score=140.83 Aligned_cols=167 Identities=23% Similarity=0.232 Sum_probs=115.0
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCccceeEEEEEeCC-EEEEEEecCCchhh-------HHh
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATGGY--SEDMIPTVGFNMRKVTKGN-VTIKLWDLGGQRRF-------RTM 73 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~-------~~~ 73 (177)
..++..+....|+++|++|||||||++++.+... ......|.......+..++ ..+.+||+||.... ...
T Consensus 149 ~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~ 228 (416)
T 1udx_A 149 RLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLE 228 (416)
T ss_dssp EEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHH
T ss_pred eeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHH
Confidence 4556666777899999999999999999986532 1112233444455555554 78999999996321 111
Q ss_pred HHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-CCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEE
Q 030429 74 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCY 152 (177)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (177)
....+..++.++.++|++ ..++..+..+..++..... ....|.++|+||+|.......+.+.+.+. ....+++
T Consensus 229 fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~-----~~g~~vi 302 (416)
T 1udx_A 229 FLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALA-----REGLAVL 302 (416)
T ss_dssp HHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHH-----TTTSCEE
T ss_pred HHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHH-----hcCCeEE
Confidence 123456799999999998 6667777666665544321 12579999999999976522233333322 1234799
Q ss_pred EeeecCCCChHHHHHHHHHHhhhc
Q 030429 153 MISCKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 153 ~~Sa~~~~~i~~l~~~l~~~~~~~ 176 (177)
++||+++.|+++++++|.+.+.+.
T Consensus 303 ~iSA~~g~gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 303 PVSALTGAGLPALKEALHALVRST 326 (416)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred EEECCCccCHHHHHHHHHHHHHhc
Confidence 999999999999999999988754
No 182
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.83 E-value=1.9e-19 Score=143.50 Aligned_cols=117 Identities=21% Similarity=0.228 Sum_probs=88.3
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhc--CCCCC------------------CCCCccceeEEEEEeCCEEEEEEecCCc
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIAT--GGYSE------------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQ 67 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~--~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~ 67 (177)
...+..+|+++|.+|+|||||+++|+. +.+.. ....|.......+..++..+++|||||+
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 85 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGH 85 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCC
Confidence 456778999999999999999999984 22110 1223444445556778899999999999
Q ss_pred hhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030429 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 129 (177)
.+|......++..+|++++|+|+++..+......| ..+... +.|+++|+||+|+...
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~-~~~~~~----~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVW-RQATTY----GVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHH-HHHHHT----TCCEEEEEECTTSTTC
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHH-HHHHHc----CCCEEEEEECCCcccc
Confidence 99988888889999999999999987766655443 334333 7899999999999764
No 183
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.83 E-value=5e-20 Score=131.51 Aligned_cols=118 Identities=18% Similarity=0.110 Sum_probs=81.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC--CC-CCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHh--------
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYS--ED-MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYC-------- 78 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~-------- 78 (177)
.+.++|+++|.+|+|||||++++++.... .. ...|.......+..++..+.+|||||+.++......++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~ 113 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV 113 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence 46799999999999999999999977642 22 22344555666778899999999999876643322222
Q ss_pred -cCCCEEEEEEeCCCCCCHHHH-HHHHHHHHcCCCC-CCCcEEEEeeCCCccc
Q 030429 79 -RGVSAILYVVDAADRDSVPIA-RSELHELLMKPSL-SGIPLLVLGNKIDKSE 128 (177)
Q Consensus 79 -~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~iiv~nK~D~~~ 128 (177)
..+|++++|++++... +... ..++..+...... ...|+++|+||+|+.+
T Consensus 114 ~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred cCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 2689999999987655 4333 3444444332211 1249999999999853
No 184
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.83 E-value=5.8e-19 Score=140.91 Aligned_cols=116 Identities=17% Similarity=0.103 Sum_probs=85.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcC--CCCC------------------CCCCccceeEEEEEeCC-------EEEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATG--GYSE------------------DMIPTVGFNMRKVTKGN-------VTIKL 61 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~--~~~~------------------~~~~t~~~~~~~~~~~~-------~~~~~ 61 (177)
.++..+|+++|..|+|||||+++|+.. .+.. ....|.......+..++ +.+++
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 456789999999999999999999742 1111 11123333334455555 89999
Q ss_pred EecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030429 62 WDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 62 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 129 (177)
|||||+.+|...+..++..+|++++|+|+++........ .|..... .++|+++|+||+|+...
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~-~~~~~~~----~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET-VWRQANK----YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHH-HHHHHHH----cCCCEEEEEeCCCcccc
Confidence 999999999988899999999999999998876544433 3333322 36899999999998654
No 185
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.81 E-value=7.8e-19 Score=125.83 Aligned_cols=119 Identities=14% Similarity=0.055 Sum_probs=80.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEeCCEEEEEEecCCchhhHH-------hHHHH--
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT-------MWERY-- 77 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~-- 77 (177)
...++|+++|.+|+|||||+|++++..+. .....+..........++..+.+|||||..++.. .+..+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 35799999999999999999999977642 1222333444555677889999999999765431 22222
Q ss_pred hcCCCEEEEEEeCCCCCCHHHH-HHHHHHHHcCCC-CCCCcEEEEeeCCCcccc
Q 030429 78 CRGVSAILYVVDAADRDSVPIA-RSELHELLMKPS-LSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~iiv~nK~D~~~~ 129 (177)
...+|++++|+|++... +... ..++..+..... ....|+++|+||+|+.+.
T Consensus 117 ~~~~d~il~v~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAYR-VDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TCEECEEEEEEESSCCC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred cCCCCEEEEEEeCCCCc-CCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 23689999999986643 4433 344444433211 012699999999998654
No 186
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.81 E-value=1.2e-18 Score=135.57 Aligned_cols=119 Identities=20% Similarity=0.246 Sum_probs=89.0
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHhc-------------CC-----------CCCCCCCccceeEEEEEeCCEEEEE
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIAT-------------GG-----------YSEDMIPTVGFNMRKVTKGNVTIKL 61 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~-------------~~-----------~~~~~~~t~~~~~~~~~~~~~~~~~ 61 (177)
.-+..+.-||+|+|+.++|||||..+++. +. ..+...-|+......+.++++.+++
T Consensus 25 ~~e~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNl 104 (548)
T 3vqt_A 25 EREAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNL 104 (548)
T ss_dssp HHHHHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEE
T ss_pred hhcccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEE
Confidence 34456778999999999999999999961 10 1222333555666678889999999
Q ss_pred EecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030429 62 WDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 62 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 129 (177)
+||||+.+|.......++-+|++++|+|+...-.... ...|...... ++|.++++||+|....
T Consensus 105 IDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT-~~v~~~a~~~----~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 105 LDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQT-RKLMDVCRMR----ATPVMTFVNKMDREAL 167 (548)
T ss_dssp ECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHH-HHHHHHHHHT----TCCEEEEEECTTSCCC
T ss_pred EeCCCcHHHHHHHHHHHHhcCceEEEeecCCCccccc-HHHHHHHHHh----CCceEEEEecccchhc
Confidence 9999999999999999999999999999977644433 3334444444 7999999999998653
No 187
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.81 E-value=1.1e-19 Score=134.81 Aligned_cols=156 Identities=19% Similarity=0.170 Sum_probs=94.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC------Cc----------------------c-----------------
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMI------PT----------------------V----------------- 45 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~------~t----------------------~----------------- 45 (177)
...+|+++|.+|||||||+|+|++..+.+... ++ .
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 35799999999999999999999876532111 11 0
Q ss_pred ----ce----eEEEEE-eCCEEEEEEecCCch-------------hhHHhHHHHhcCCC-EEEEEEeCCCCCCHHHHHHH
Q 030429 46 ----GF----NMRKVT-KGNVTIKLWDLGGQR-------------RFRTMWERYCRGVS-AILYVVDAADRDSVPIARSE 102 (177)
Q Consensus 46 ----~~----~~~~~~-~~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~~~~~~~~~ 102 (177)
++ ....+. .+...+.+|||||.. .+......++..++ ++++|+|++....-.....+
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i 189 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV 189 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence 00 001111 124679999999953 34556666776555 55556676543221222223
Q ss_pred HHHHHcCCCCCCCcEEEEeeCCCcccccC-HHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHH
Q 030429 103 LHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171 (177)
Q Consensus 103 ~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 171 (177)
+..+ .. .+.|+++|+||+|+.+... ..+..+. ..........+++++||+++.|++++++.+.+
T Consensus 190 ~~~~-~~---~~~~~i~V~NK~Dl~~~~~~~~~~~~~-~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 190 AKEV-DP---QGQRTIGVITKLDLMDEGTDARDVLEN-KLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHH-CT---TCTTEEEEEECGGGSCTTCCCHHHHTT-CSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHh-Cc---CCCceEEEeccccccCcchhHHHHHhC-CcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 3332 22 4689999999999976433 2222221 11111122356889999999999999999876
No 188
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.80 E-value=1.3e-19 Score=134.81 Aligned_cols=151 Identities=19% Similarity=0.199 Sum_probs=95.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccc----------------------------------------------
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG---------------------------------------------- 46 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~---------------------------------------------- 46 (177)
.+|+++|++|||||||++++++..+.+....+..
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE 114 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence 3999999999999999999998665222111000
Q ss_pred -----------eeEEEEEeCCEEEEEEecCCchhh-------------HHhHHHHhcCCCEEEEEEeCCCCCCHH-HHHH
Q 030429 47 -----------FNMRKVTKGNVTIKLWDLGGQRRF-------------RTMWERYCRGVSAILYVVDAADRDSVP-IARS 101 (177)
Q Consensus 47 -----------~~~~~~~~~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~~~~-~~~~ 101 (177)
............+.+|||||..++ ......++..+|++++|+|.++.+... ....
T Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~ 194 (360)
T 3t34_A 115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 194 (360)
T ss_dssp SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHH
T ss_pred cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHH
Confidence 001111123457899999997765 666778899999999999876654332 2122
Q ss_pred HHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHH
Q 030429 102 ELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLI 170 (177)
Q Consensus 102 ~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 170 (177)
.... ....+.|+++|+||+|+.+.... ..+.+... ......+|+++|++++.++++.+..+.
T Consensus 195 l~~~----~~~~~~~~i~V~nK~Dl~~~~~~--~~~~~~~~-~~~~~~~~~~v~~~s~~~i~~~~~~~~ 256 (360)
T 3t34_A 195 ISRE----VDPSGDRTFGVLTKIDLMDKGTD--AVEILEGR-SFKLKYPWVGVVNRSQADINKNVDMIA 256 (360)
T ss_dssp HHHH----SCTTCTTEEEEEECGGGCCTTCC--SHHHHTTS-SSCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred HHHH----hcccCCCEEEEEeCCccCCCccc--HHHHHcCc-cccccCCeEEEEECChHHhccCCCHHH
Confidence 2222 22246799999999999764321 11112111 122335788999998888877655443
No 189
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.79 E-value=3.3e-19 Score=132.37 Aligned_cols=109 Identities=12% Similarity=0.069 Sum_probs=72.2
Q ss_pred CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHH
Q 030429 55 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQA 134 (177)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~ 134 (177)
.++.+.+|||||..... ...+..+|++++|+|.+..+....+. ......|+++|+||+|+.+......
T Consensus 170 ~~~~~iiiDTpGi~~~~---~~~~~~aD~vl~V~d~~~~~~~~~l~---------~~~~~~p~ivVlNK~Dl~~~~~~~~ 237 (355)
T 3p32_A 170 AGFDVILIETVGVGQSE---VAVANMVDTFVLLTLARTGDQLQGIK---------KGVLELADIVVVNKADGEHHKEARL 237 (355)
T ss_dssp TTCCEEEEEECSCSSHH---HHHHTTCSEEEEEEESSTTCTTTTCC---------TTSGGGCSEEEEECCCGGGHHHHHH
T ss_pred CCCCEEEEeCCCCCcHH---HHHHHhCCEEEEEECCCCCccHHHHH---------HhHhhcCCEEEEECCCCcChhHHHH
Confidence 56889999999954432 23457899999999987654432211 1112468999999999976433322
Q ss_pred HHHHhCc----cccc--CCceeEEEeeecCCCChHHHHHHHHHHhhh
Q 030429 135 LVDQLGL----ESIT--DREVCCYMISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 135 ~~~~~~~----~~~~--~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
..+.+.. .... ....+++++||++|.|+++++++|.+.+..
T Consensus 238 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 238 AARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 2222211 1100 113479999999999999999999987653
No 190
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.77 E-value=2.3e-19 Score=134.62 Aligned_cols=81 Identities=23% Similarity=0.302 Sum_probs=46.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEE---------------------eC---CEEEEEEecCC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVT---------------------KG---NVTIKLWDLGG 66 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~---------------------~~---~~~~~~~D~~g 66 (177)
++|+++|.||||||||+|++++...... ...|......... .+ ...+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 5899999999999999999997653211 1123222222111 11 36899999999
Q ss_pred chhh----HHhHH---HHhcCCCEEEEEEeCCCC
Q 030429 67 QRRF----RTMWE---RYCRGVSAILYVVDAADR 93 (177)
Q Consensus 67 ~~~~----~~~~~---~~~~~~d~~i~v~d~~~~ 93 (177)
.... ..+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7542 22222 246789999999999875
No 191
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.76 E-value=3.8e-18 Score=132.85 Aligned_cols=125 Identities=18% Similarity=0.138 Sum_probs=85.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCC-ccceeEEEE-----------------------E---------
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIP-TVGFNMRKV-----------------------T--------- 53 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~-t~~~~~~~~-----------------------~--------- 53 (177)
....+|+++|.+|+|||||+|+|++..+. ....+ |........ .
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 45689999999999999999999987753 12222 211111000 0
Q ss_pred -----eCC---EEEEEEecCCchh-----------hHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCC
Q 030429 54 -----KGN---VTIKLWDLGGQRR-----------FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSG 114 (177)
Q Consensus 54 -----~~~---~~~~~~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (177)
..+ ..+.+|||||... +......++..+|++++|+|+++.........++..+.. ..
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~ 218 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----HE 218 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----CG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cC
Confidence 000 3588999999764 556666778899999999999886666666666655432 35
Q ss_pred CcEEEEeeCCCcccccCHHHHHHH
Q 030429 115 IPLLVLGNKIDKSEALSKQALVDQ 138 (177)
Q Consensus 115 ~~~iiv~nK~D~~~~~~~~~~~~~ 138 (177)
.|+++|+||+|+.+..+..+....
T Consensus 219 ~pvilVlNK~Dl~~~~el~~~~~~ 242 (550)
T 2qpt_A 219 DKIRVVLNKADMVETQQLMRVYGA 242 (550)
T ss_dssp GGEEEEEECGGGSCHHHHHHHHHH
T ss_pred CCEEEEEECCCccCHHHHHHHHHH
Confidence 799999999999876544444443
No 192
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.76 E-value=1e-18 Score=126.89 Aligned_cols=160 Identities=18% Similarity=0.248 Sum_probs=75.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcC-CCCCCC--------CCccceeEEEE--E--eCCEEEEEEecCCc-------h
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATG-GYSEDM--------IPTVGFNMRKV--T--KGNVTIKLWDLGGQ-------R 68 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~-~~~~~~--------~~t~~~~~~~~--~--~~~~~~~~~D~~g~-------~ 68 (177)
..-.++|+++|++|+|||||++++.+. .+.... .++.......+ . .....+++||++|. +
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 345689999999999999999998764 332221 11222111111 1 22468999999997 4
Q ss_pred hhHHhHH-------HHhc-------------CCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 69 RFRTMWE-------RYCR-------------GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 69 ~~~~~~~-------~~~~-------------~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
.+..... .++. .+++++++.+.+. .+++.....+...+. ...|+++|+||+|+..
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l~----~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAIH----NKVNIVPVIAKADTLT 169 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHHT----TTSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHHH----hcCCEEEEEEeCCCCC
Confidence 4443332 2222 1234555555322 234443322222211 3579999999999976
Q ss_pred ccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHHHhhh
Q 030429 129 ALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
..+.....+... ......+++++++||+++ |++++|+.+.+.+.+
T Consensus 170 ~~e~~~~~~~~~-~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 170 LKERERLKKRIL-DEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp HHHHHHHHHHHH-HHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred HHHHHHHHHHHH-HHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 432211111111 111112357899999999 999999999887753
No 193
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.75 E-value=3.2e-18 Score=139.01 Aligned_cols=115 Identities=20% Similarity=0.220 Sum_probs=85.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCC------------CC------CCCCCccceeEEEEEe----------------
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGG------------YS------EDMIPTVGFNMRKVTK---------------- 54 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~------------~~------~~~~~t~~~~~~~~~~---------------- 54 (177)
..+..||+++|++++|||||+++|+... +. .....|+......+..
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 4566899999999999999999998531 10 0112233333333333
Q ss_pred CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 55 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
.++.+++|||||+.+|...+..+++.+|++++|+|+++..++.....|. .... .++|+++|+||+|+..
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~----~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLR-QALG----ERIKPVVVINKVDRAL 164 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHH-HHHH----TTCEEEEEEECHHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH----cCCCeEEEEECCCcch
Confidence 2689999999999999999999999999999999999988777755443 3333 3689999999999863
No 194
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.74 E-value=4.5e-17 Score=129.84 Aligned_cols=156 Identities=18% Similarity=0.169 Sum_probs=99.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCccc-------------------------------------------
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGY-SEDMIPTVG------------------------------------------- 46 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~-~~~~~~t~~------------------------------------------- 46 (177)
...+|+++|.+++|||||+|++++..+ +.....++.
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 446999999999999999999998765 222111110
Q ss_pred ----------eeEEEEEeCCEEEEEEecCCchh-------------hHHhHHHHh-cCCCEEEEEEeCCCCCCHHHHHHH
Q 030429 47 ----------FNMRKVTKGNVTIKLWDLGGQRR-------------FRTMWERYC-RGVSAILYVVDAADRDSVPIARSE 102 (177)
Q Consensus 47 ----------~~~~~~~~~~~~~~~~D~~g~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~~~~~~~~~ 102 (177)
+..........++.++||||... .......++ ..+|++++|+|++....-......
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l 209 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 209 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence 00111112234688999999433 223344444 578999999999875444333233
Q ss_pred HHHHHcCCCCCCCcEEEEeeCCCcccccCH-HHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHH
Q 030429 103 LHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171 (177)
Q Consensus 103 ~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 171 (177)
+..+ .. .+.|+++|+||+|+.+.... ..+.+ -..........+++++||++|.|+++|++.+.+
T Consensus 210 l~~L-~~---~g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 210 AKEV-DP---QGQRTIGVITKLDLMDEGTDARDVLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHH-CT---TCSSEEEEEECTTSSCTTCCSHHHHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHH-Hh---cCCCEEEEEeCcccCCcchhhHHHHH-HHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 3333 22 36899999999999865332 22221 111111123457889999999999999999886
No 195
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.74 E-value=8.7e-18 Score=119.72 Aligned_cols=170 Identities=14% Similarity=0.033 Sum_probs=100.0
Q ss_pred ecccccceeEEEEEcCCCCCHHHHHHHHh-----cCCC-----CCCCCCc---cc------eeEEEE-------------
Q 030429 5 ISLFFKQEMELSLIGLQNAGKTSLVNTIA-----TGGY-----SEDMIPT---VG------FNMRKV------------- 52 (177)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~-----~~~~-----~~~~~~t---~~------~~~~~~------------- 52 (177)
-...+.+...+++.|.+||||||+++.+. +... ......+ .+ ......
T Consensus 7 ~~~~~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (262)
T 1yrb_A 7 HHHHGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVE 86 (262)
T ss_dssp CCCTTCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHH
T ss_pred cccCCcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEe
Confidence 34567778899999999999999999997 3221 1100000 00 000000
Q ss_pred -----------------E-eCCEEEEEEecCCchhhHHhHH------HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHc
Q 030429 53 -----------------T-KGNVTIKLWDLGGQRRFRTMWE------RYCRGVSAILYVVDAADRDSVPIARSELHELLM 108 (177)
Q Consensus 53 -----------------~-~~~~~~~~~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 108 (177)
. ..++++.+|||||......... ..+.+ +++++++|++.................
T Consensus 87 ~~~~~~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~ 165 (262)
T 1yrb_A 87 SYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALL 165 (262)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHH
T ss_pred cHHHHhhhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHH
Confidence 0 1235899999999876543211 24566 899999998655444333222111111
Q ss_pred CCCCCCCcEEEEeeCCCcccccCHHHHHHHhCc-------------------------ccccCCceeEEEeeecCCCChH
Q 030429 109 KPSLSGIPLLVLGNKIDKSEALSKQALVDQLGL-------------------------ESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 109 ~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
.....+.|+++|+||+|+.+....++..+.+.. ........+++++||+++.|++
T Consensus 166 ~~~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~ 245 (262)
T 1yrb_A 166 IDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFE 245 (262)
T ss_dssp HHHHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHH
T ss_pred HhcccCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHH
Confidence 001125799999999998764322222221100 0001123468999999999999
Q ss_pred HHHHHHHHHhhh
Q 030429 164 AVIDWLIKHSKT 175 (177)
Q Consensus 164 ~l~~~l~~~~~~ 175 (177)
+++++|.+.+..
T Consensus 246 ~l~~~i~~~~~~ 257 (262)
T 1yrb_A 246 DLETLAYEHYCT 257 (262)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 999999987754
No 196
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.73 E-value=2.7e-17 Score=121.65 Aligned_cols=108 Identities=16% Similarity=0.083 Sum_probs=65.0
Q ss_pred CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH--
Q 030429 55 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-- 132 (177)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-- 132 (177)
.+..+.++||+|..... ......+|++++|+|++++........ .+ ...|.++|+||+|+.+....
T Consensus 165 ~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK~Dl~~~~~~~~ 232 (349)
T 2www_A 165 AGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVTKSDGDLIVPARR 232 (349)
T ss_dssp TTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHHHHHH
T ss_pred CCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEeeecCCCchhHHH
Confidence 56788999999954222 334678999999999976532221111 11 13588999999999753221
Q ss_pred --HHHHHHhCccccc--CCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 133 --QALVDQLGLESIT--DREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 133 --~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
.++...+...... ....+++++||++|.|+++++++|.+.+.
T Consensus 233 ~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 233 IQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 1222222221110 11246889999999999999999988653
No 197
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.73 E-value=8.1e-19 Score=127.51 Aligned_cols=132 Identities=14% Similarity=0.086 Sum_probs=101.7
Q ss_pred HHHHHHhcCCCC-CCCCCccceeEEEEEe-CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCC-CHHHHHHHH
Q 030429 27 SLVNTIATGGYS-EDMIPTVGFNMRKVTK-GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD-SVPIARSEL 103 (177)
Q Consensus 27 sli~~l~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~ 103 (177)
+|+.+++.+.|. ..+.+|.+..+. ... .+..+.+||+ ++++..+++.+++++|++++|+|++++. ++..+..|+
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l 108 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFL 108 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHH
Confidence 688888888887 778888884443 322 2237899999 8899999999999999999999999987 688888888
Q ss_pred HHHHcCCCCCCCcEEEEeeCCCcccccCH---HHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHH
Q 030429 104 HELLMKPSLSGIPLLVLGNKIDKSEALSK---QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171 (177)
Q Consensus 104 ~~~~~~~~~~~~~~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 171 (177)
..+.. .++|+++|+||+|+.+.... +++.+.+.. . .++++|||++|.|++++|+.+..
T Consensus 109 ~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~-----~-~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 109 VLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIYSG-----L-YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTT-----T-SCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhh-----h-CcEEEEECCCCcCHHHHHHHhcC
Confidence 76644 37899999999999764332 233333321 1 47999999999999999988753
No 198
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.73 E-value=6e-18 Score=117.65 Aligned_cols=151 Identities=16% Similarity=0.185 Sum_probs=93.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCC--------CCCc--------cceeEEEE------------------EeC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSED--------MIPT--------VGFNMRKV------------------TKG 55 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~--------~~~t--------~~~~~~~~------------------~~~ 55 (177)
.+..+|+++|.+|||||||+++++....... ...+ .+.....+ ...
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS 107 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence 4567999999999999999999985421110 0000 01111111 123
Q ss_pred CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--cCHH
Q 030429 56 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA--LSKQ 133 (177)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~ 133 (177)
+..+.+|||+|+..... .+-...+.+++|+|+++.... ... +... ...|.++|+||+|+.+. ...+
T Consensus 108 ~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~-~~~~------~~~~~iiv~NK~Dl~~~~~~~~~ 175 (221)
T 2wsm_A 108 DCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEK-HPEI------FRVADLIVINKVALAEAVGADVE 175 (221)
T ss_dssp TCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHH-CHHH------HHTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhh-hhhh------hhcCCEEEEecccCCcchhhHHH
Confidence 46788999999511111 111246889999999775421 111 1111 14788999999998653 2444
Q ss_pred HHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHHHhhh
Q 030429 134 ALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
+..+.+... ....+++++||++|.|+++++++|.+.+..
T Consensus 176 ~~~~~~~~~---~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 176 KMKADAKLI---NPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHHHHHH---CTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred HHHHHHHHh---CCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 444443221 234579999999999999999999987754
No 199
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.73 E-value=1.9e-17 Score=122.19 Aligned_cols=157 Identities=15% Similarity=0.125 Sum_probs=93.7
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHhcC------CC---CCCCCCc-------------------cceeEEE------
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATG------GY---SEDMIPT-------------------VGFNMRK------ 51 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~------~~---~~~~~~t-------------------~~~~~~~------ 51 (177)
++...+...|+++|++|+|||||++.+.+. .. ..+...+ .......
T Consensus 50 ~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~ 129 (341)
T 2p67_A 50 MPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGH 129 (341)
T ss_dssp GGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC---
T ss_pred CcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccc
Confidence 345567789999999999999999999621 10 0000000 0000000
Q ss_pred --------------EEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcE
Q 030429 52 --------------VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPL 117 (177)
Q Consensus 52 --------------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (177)
...+++++.+|||||....... ....+|++++|+|+++.+....... .. ...|.
T Consensus 130 l~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ 197 (341)
T 2p67_A 130 LGGASQRARELMLLCEAAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL------MEVAD 197 (341)
T ss_dssp --CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH------HHHCS
T ss_pred cchhHHHHHHHHHHhhccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccC
Confidence 0134678999999997655432 4678999999999975432211110 00 14688
Q ss_pred EEEeeCCCcccccCHHHHHHHh----Cccccc-C-CceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 118 LVLGNKIDKSEALSKQALVDQL----GLESIT-D-REVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 118 iiv~nK~D~~~~~~~~~~~~~~----~~~~~~-~-~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
++|+||+|+.+........+.+ +..... . ...+++++||++|.|++++++.|.+.+.
T Consensus 198 ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 198 LIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp EEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 9999999997643222221222 111100 0 1247899999999999999999988654
No 200
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.71 E-value=1.1e-17 Score=125.91 Aligned_cols=158 Identities=16% Similarity=0.157 Sum_probs=72.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC-CCC-------CCccceeEEEE--EeC--CEEEEEEecCCchhhH------
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYS-EDM-------IPTVGFNMRKV--TKG--NVTIKLWDLGGQRRFR------ 71 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~-------~~t~~~~~~~~--~~~--~~~~~~~D~~g~~~~~------ 71 (177)
.-.++|+++|++|||||||++++++..+. ... .++.......+ ... ...+++||++|...+.
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 34578999999999999999999976552 111 12222111111 112 2478999999975531
Q ss_pred -HhH------------------HHHhcCCCEEEEEEeCCCC-CCHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCccccc
Q 030429 72 -TMW------------------ERYCRGVSAILYVVDAADR-DSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEAL 130 (177)
Q Consensus 72 -~~~------------------~~~~~~~d~~i~v~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~ 130 (177)
... +.++.++++.+++|..... .+++... .++..+ . .+.|+++|+||+|+....
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L-~----~~v~iIlVinK~Dll~~~ 183 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL-H----EKVNIIPLIAKADTLTPE 183 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHH-T----TTSEEEEEEESTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHH-h----ccCcEEEEEEcccCccHH
Confidence 110 1123344443444443322 3455444 344444 2 268999999999997643
Q ss_pred CHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHHHh
Q 030429 131 SKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 173 (177)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 173 (177)
+.....+.... .....+++++++|++++.++++++..+.+.+
T Consensus 184 ev~~~k~~i~~-~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 184 ECQQFKKQIMK-EIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHHHH-HHHHHTCCCCCCC-----------------C
T ss_pred HHHHHHHHHHH-HHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 33222122111 1111235688999999999999888776643
No 201
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.70 E-value=9.1e-17 Score=108.92 Aligned_cols=112 Identities=17% Similarity=0.247 Sum_probs=86.6
Q ss_pred cCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHH---HHHHcCCC-CCCCcEEEEeeCC-CcccccCHHHHHHH
Q 030429 64 LGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSEL---HELLMKPS-LSGIPLLVLGNKI-DKSEALSKQALVDQ 138 (177)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~iiv~nK~-D~~~~~~~~~~~~~ 138 (177)
.+||.+.+..|+.|+.++|++|||+|.+|.+.++ .+..+ ..++.... ..+.|++|++||. |+.......++.+.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~ 187 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 187 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHH
Confidence 3488999999999999999999999999987665 66665 34444332 3678999999995 78888888999999
Q ss_pred hCcccccCCceeEEEeeecCCCChHHHHHHHHHHhhhcC
Q 030429 139 LGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177 (177)
Q Consensus 139 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 177 (177)
+++... .+.+.+..|||.+|+|+.+-++||.+.+.+++
T Consensus 188 L~L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~ 225 (227)
T 3l82_B 188 LHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESKR 225 (227)
T ss_dssp TTGGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred cCCcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence 998766 58899999999999999999999999887653
No 202
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.70 E-value=5.6e-16 Score=114.44 Aligned_cols=81 Identities=23% Similarity=0.296 Sum_probs=57.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEeCC-----------------EEEEEEecCCchhhHH
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGN-----------------VTIKLWDLGGQRRFRT 72 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~~~~~ 72 (177)
.++|+++|.||||||||+|++++...... ...|.+.....+..++ ..+.+|||||..++.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 36899999999999999999997663222 2234444443444333 5799999999876542
Q ss_pred h-------HHHHhcCCCEEEEEEeCCC
Q 030429 73 M-------WERYCRGVSAILYVVDAAD 92 (177)
Q Consensus 73 ~-------~~~~~~~~d~~i~v~d~~~ 92 (177)
. ...+++.+|++++|+|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 1 2235788999999999986
No 203
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.69 E-value=4.3e-16 Score=115.63 Aligned_cols=83 Identities=13% Similarity=0.161 Sum_probs=63.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEEeCCEEEEEEecCCchhhH-------HhHHHHhcCC
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSE--DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR-------TMWERYCRGV 81 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~ 81 (177)
-..+|+++|.|+||||||+|+|++..... ....|.......+...+.+++++||||..... ......++.+
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~a 150 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTC 150 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHC
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhc
Confidence 34799999999999999999999765432 23456677777888999999999999953221 1122346779
Q ss_pred CEEEEEEeCCCC
Q 030429 82 SAILYVVDAADR 93 (177)
Q Consensus 82 d~~i~v~d~~~~ 93 (177)
|++++|+|+++|
T Consensus 151 d~il~vvD~~~p 162 (376)
T 4a9a_A 151 NLLFIILDVNKP 162 (376)
T ss_dssp SEEEEEEETTSH
T ss_pred CccccccccCcc
Confidence 999999999875
No 204
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.69 E-value=2.9e-17 Score=130.05 Aligned_cols=157 Identities=22% Similarity=0.266 Sum_probs=109.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc--C------CCCC-----C-------CCCccceeEEEEEeCCEEEEEEecCCchhhHH
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT--G------GYSE-----D-------MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT 72 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~--~------~~~~-----~-------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 72 (177)
-||+|+|+.++|||||..+|+. + .... + ..-|+......+.++++.++++||||+.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 4799999999999999999972 1 1110 0 11233344445667889999999999999999
Q ss_pred hHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH---HHHHHHhCccc------
Q 030429 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK---QALVDQLGLES------ 143 (177)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~---~~~~~~~~~~~------ 143 (177)
.....++-+|++++|+|+...-.... ...|...... ++|.++++||+|....+.. +++.+.++...
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~~----~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~ 157 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQT-RILFHALRKM----GIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKV 157 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHHH----TCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCC
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHHc----CCCeEEEEeccccccCCHHHHHHHHHHHhCCCcccccee
Confidence 99999999999999999977543333 3444444343 7899999999998654321 22322222100
Q ss_pred --------------------------------------------------ccCCceeEEEeeecCCCChHHHHHHHHHHh
Q 030429 144 --------------------------------------------------ITDREVCCYMISCKDSINIDAVIDWLIKHS 173 (177)
Q Consensus 144 --------------------------------------------------~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 173 (177)
......|++..||.++.|++.|++.+.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~ 237 (638)
T 3j25_A 158 ELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKF 237 (638)
T ss_dssp CSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSC
T ss_pred EeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhccc
Confidence 011235788899999999999999998865
Q ss_pred h
Q 030429 174 K 174 (177)
Q Consensus 174 ~ 174 (177)
.
T Consensus 238 p 238 (638)
T 3j25_A 238 Y 238 (638)
T ss_dssp C
T ss_pred c
Confidence 3
No 205
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.66 E-value=9e-15 Score=117.19 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=80.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc--------CCC------------CCCCCCccceeEEEEEe-------CCEEEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT--------GGY------------SEDMIPTVGFNMRKVTK-------GNVTIKL 61 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~--------~~~------------~~~~~~t~~~~~~~~~~-------~~~~~~~ 61 (177)
.++--||+|+|+.++|||||..+|+. +.. .+...-|+......+.+ +++.+++
T Consensus 10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl 89 (709)
T 4fn5_A 10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV 89 (709)
T ss_dssp GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence 35667999999999999999999971 111 11111233333333332 3689999
Q ss_pred EecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 62 WDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 62 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
+||||+.+|.......++-+|++++|+|+...-.... ...|...... ++|.++++||+|...
T Consensus 90 IDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT-~~v~~~a~~~----~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 90 IDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQS-ETVWRQANKY----GVPRIVYVNKMDRQG 151 (709)
T ss_dssp ECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHH----TCCEEEEEECSSSTT
T ss_pred EeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhH-HHHHHHHHHc----CCCeEEEEccccccC
Confidence 9999999999999999999999999999976543332 3344444343 799999999999854
No 206
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.65 E-value=1.8e-18 Score=120.63 Aligned_cols=61 Identities=21% Similarity=0.253 Sum_probs=43.9
Q ss_pred CCcEEEEeeCCCcccc--cCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHHHhhhcC
Q 030429 114 GIPLLVLGNKIDKSEA--LSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177 (177)
Q Consensus 114 ~~~~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 177 (177)
..|.++|+||+|+.+. ...++..+.+... ....+++++||++|.|++++|++|.+.+.+.|
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 226 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRI---NPDAEVVLLSLKTMEGFDKVLEFIEKSVKEVK 226 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHH---CTTSEEEECCTTTCTTHHHHHHHHHHHHHHCC
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHh---CCCCeEEEEEecCCCCHHHHHHHHHHHHHhhC
Confidence 3577999999998653 2334433333211 23357999999999999999999999887654
No 207
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.62 E-value=1.4e-15 Score=112.02 Aligned_cols=158 Identities=12% Similarity=0.109 Sum_probs=92.9
Q ss_pred ecccccceeEEEEEcCCCCCHHHHHHHHhc------CCCC---CCCCCc------------cc-----eeEEE-------
Q 030429 5 ISLFFKQEMELSLIGLQNAGKTSLVNTIAT------GGYS---EDMIPT------------VG-----FNMRK------- 51 (177)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~------~~~~---~~~~~t------------~~-----~~~~~------- 51 (177)
.++...+...++++|++|||||||++.+.+ +... .....+ ++ .....
T Consensus 48 i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~ 127 (337)
T 2qm8_A 48 VLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSG 127 (337)
T ss_dssp HGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCS
T ss_pred CCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccc
Confidence 456677788999999999999999999973 2210 000000 00 00000
Q ss_pred ---------------EEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCc
Q 030429 52 ---------------VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP 116 (177)
Q Consensus 52 ---------------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (177)
....+.++.++||||...... .....+|.+++++|++..+....+.... ...+
T Consensus 128 ~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~i---------~~~~ 195 (337)
T 2qm8_A 128 TLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGI---------FELA 195 (337)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTH---------HHHC
T ss_pred cccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHHH---------hccc
Confidence 112578899999999754432 2346799999999986432211110000 1235
Q ss_pred EEEEeeCCCcccccC-----HHHHHHHhCccccc--CCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 117 LLVLGNKIDKSEALS-----KQALVDQLGLESIT--DREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 117 ~iiv~nK~D~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
.++++||+|+..... .+++...+...... ....+++++||+++.|++++++.|.+...
T Consensus 196 ~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 196 DMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp SEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred cEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 678889999754211 12222222211100 00236888999999999999999988654
No 208
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.61 E-value=1.2e-14 Score=107.82 Aligned_cols=80 Identities=21% Similarity=0.281 Sum_probs=55.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEe---------------------CCEEEEEEecCCchh
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYS--EDMIPTVGFNMRKVTK---------------------GNVTIKLWDLGGQRR 69 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~---------------------~~~~~~~~D~~g~~~ 69 (177)
++|+++|.||||||||+|++.+.... .....|...+...... .+..+.+|||||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 57999999999999999999865421 1111233333333222 245799999999765
Q ss_pred hH-------HhHHHHhcCCCEEEEEEeCCC
Q 030429 70 FR-------TMWERYCRGVSAILYVVDAAD 92 (177)
Q Consensus 70 ~~-------~~~~~~~~~~d~~i~v~d~~~ 92 (177)
+. .....+++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 42 223345789999999999986
No 209
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.59 E-value=2.5e-15 Score=106.63 Aligned_cols=113 Identities=17% Similarity=0.250 Sum_probs=89.2
Q ss_pred ecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHH---HHHcCCC-CCCCcEEEEeeC-CCcccccCHHHHHH
Q 030429 63 DLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELH---ELLMKPS-LSGIPLLVLGNK-IDKSEALSKQALVD 137 (177)
Q Consensus 63 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~iiv~nK-~D~~~~~~~~~~~~ 137 (177)
|.+||.+.+..|+.|+.++|++|+|+|.+|.+.++ ....+. .++.... ..+.|++|++|| .|+.......++.+
T Consensus 193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e 271 (312)
T 3l2o_B 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAH 271 (312)
T ss_dssp ----CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHH
Confidence 34688999999999999999999999999988765 444433 3333211 257899999996 68988888899999
Q ss_pred HhCcccccCCceeEEEeeecCCCChHHHHHHHHHHhhhcC
Q 030429 138 QLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177 (177)
Q Consensus 138 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 177 (177)
.+++... .+.+.+..|||.+|+|+.+-++||.+.+.+++
T Consensus 272 ~L~L~~l-~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~ 310 (312)
T 3l2o_B 272 ELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESKR 310 (312)
T ss_dssp HTTGGGG-CSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred HcCCccC-CCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence 9998766 47899999999999999999999999987653
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.43 E-value=3.7e-13 Score=100.39 Aligned_cols=87 Identities=18% Similarity=0.302 Sum_probs=52.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEeC-----------------CEEEEEEecCCchh
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKG-----------------NVTIKLWDLGGQRR 69 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~-----------------~~~~~~~D~~g~~~ 69 (177)
....++|+++|.+|||||||+|++.+...... ...|.......+... ...+.+||+||...
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 35678999999999999999999997654222 223444444444432 23599999999876
Q ss_pred hHH-------hHHHHhcCCCEEEEEEeCCCCCC
Q 030429 70 FRT-------MWERYCRGVSAILYVVDAADRDS 95 (177)
Q Consensus 70 ~~~-------~~~~~~~~~d~~i~v~d~~~~~~ 95 (177)
+.+ ....+++.+|++++|+|+++.+.
T Consensus 99 ~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 99 GAHNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp --------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred ccchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 554 34567889999999999986443
No 211
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.34 E-value=1.1e-12 Score=95.15 Aligned_cols=96 Identities=15% Similarity=0.093 Sum_probs=71.8
Q ss_pred chhhHHhHHHHhcCCCEEEEEEeCCCCC-CHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC---HHHHHHHhCcc
Q 030429 67 QRRFRTMWERYCRGVSAILYVVDAADRD-SVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS---KQALVDQLGLE 142 (177)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~---~~~~~~~~~~~ 142 (177)
++++..+.+.++.++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+... .+++.+.+..
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~- 140 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYRD- 140 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHH-
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHHH-
Confidence 5666666677899999999999999986 88887888876544 3789999999999976531 2222222211
Q ss_pred cccCCceeEEEeeecCCCChHHHHHHHHH
Q 030429 143 SITDREVCCYMISCKDSINIDAVIDWLIK 171 (177)
Q Consensus 143 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 171 (177)
.+.+++++||++|.|++++++.+..
T Consensus 141 ----~g~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 141 ----AGYDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp ----TTCEEEECCTTTCTTHHHHHHHTTT
T ss_pred ----CCCeEEEEECCCCCCHHHHHhhccC
Confidence 1247999999999999999987643
No 212
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.23 E-value=5.1e-11 Score=91.69 Aligned_cols=155 Identities=17% Similarity=0.160 Sum_probs=88.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh------cCCC---CCCC-CCc-----------cceeEEEE----------------
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIA------TGGY---SEDM-IPT-----------VGFNMRKV---------------- 52 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~------~~~~---~~~~-~~t-----------~~~~~~~~---------------- 52 (177)
.+...|+++|.+||||||++++|. +... ..+. .+. .++.+...
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 456789999999999999999998 3221 0000 000 01111110
Q ss_pred -EeCCEEEEEEecCCchhhH----HhHHHH--hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcE-EEEeeCC
Q 030429 53 -TKGNVTIKLWDLGGQRRFR----TMWERY--CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPL-LVLGNKI 124 (177)
Q Consensus 53 -~~~~~~~~~~D~~g~~~~~----~~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiv~nK~ 124 (177)
...++++.++||||..... ...... +..+|.+++|+|++...........+.. ..|+ .+|+||+
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a~~~~~--------~~~i~gvVlNK~ 250 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKD--------KVDVASVIVTKL 250 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHHHHHHH--------HHCCCCEEEECT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHHHHHHh--------hcCceEEEEeCC
Confidence 1156889999999965321 111111 2268999999999775332222111111 1464 7889999
Q ss_pred CcccccCH-HHHHHHhCccc--------c--cCCceeEEEeeecCCCC-hHHHHHHHHHH
Q 030429 125 DKSEALSK-QALVDQLGLES--------I--TDREVCCYMISCKDSIN-IDAVIDWLIKH 172 (177)
Q Consensus 125 D~~~~~~~-~~~~~~~~~~~--------~--~~~~~~~~~~Sa~~~~~-i~~l~~~l~~~ 172 (177)
|....... ....+.++... . .....+.+++|+..|.| +++|++++.+.
T Consensus 251 D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 251 DGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp TSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 98754332 23333333211 0 01122445689999999 99999998765
No 213
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.19 E-value=1.2e-10 Score=86.94 Aligned_cols=84 Identities=21% Similarity=0.343 Sum_probs=60.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCC-CCC--CCCccceeEEEEEeCC-----------------EEEEEEecCCch
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGY-SED--MIPTVGFNMRKVTKGN-----------------VTIKLWDLGGQR 68 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~-~~~--~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~ 68 (177)
.+...+++++|++|+|||||+|.+++... ... ...|...+...+...+ ..+.+||+||..
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~ 96 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 96 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence 45578999999999999999999997654 222 2224555555555443 468999999943
Q ss_pred h-------hHHhHHHHhcCCCEEEEEEeCCC
Q 030429 69 R-------FRTMWERYCRGVSAILYVVDAAD 92 (177)
Q Consensus 69 ~-------~~~~~~~~~~~~d~~i~v~d~~~ 92 (177)
. ........++.+|++++|+|+.+
T Consensus 97 ~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 97 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2 22334556788999999999864
No 214
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.17 E-value=4.6e-10 Score=84.44 Aligned_cols=158 Identities=16% Similarity=0.230 Sum_probs=85.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcc-cee----EEEEEeCC-EEEEEEecCCchhh----HHhHH-HHhc
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTV-GFN----MRKVTKGN-VTIKLWDLGGQRRF----RTMWE-RYCR 79 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~-~~~----~~~~~~~~-~~~~~~D~~g~~~~----~~~~~-~~~~ 79 (177)
....++++|++|+|||||+|.+.+-.......-+. +.. ...++... ..+.+||++|.... ..... ..+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 34589999999999999999998632211110000 000 11122222 25788999985321 11111 1234
Q ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc---------cccCHHHHHHHhCccc-----cc
Q 030429 80 GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS---------EALSKQALVDQLGLES-----IT 145 (177)
Q Consensus 80 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~---------~~~~~~~~~~~~~~~~-----~~ 145 (177)
+.+..+. ++... +...+..+...+.. .++|+++|.||.|+. +....+++.+.+.... ..
T Consensus 148 ~~~~~~~-lS~G~---~~kqrv~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~ 220 (413)
T 1tq4_A 148 EYDFFII-ISATR---FKKNDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN 220 (413)
T ss_dssp GCSEEEE-EESSC---CCHHHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCeEE-eCCCC---ccHHHHHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455554 66642 12222233333232 268999999999964 1222333333322111 00
Q ss_pred -CCceeEEEeee--cCCCChHHHHHHHHHHhhh
Q 030429 146 -DREVCCYMISC--KDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 146 -~~~~~~~~~Sa--~~~~~i~~l~~~l~~~~~~ 175 (177)
.....++.+|+ .++.|++++.+.+.+.+.+
T Consensus 221 g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 221 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred CCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 11235788999 5566799999999987754
No 215
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.13 E-value=2.1e-10 Score=86.31 Aligned_cols=143 Identities=11% Similarity=0.146 Sum_probs=69.9
Q ss_pred ccccce--eEEEEEcCCCCCHHHHHHHHhcCCCCCCCC----CccceeEEE--EEeCC--EEEEEEecCCchhh------
Q 030429 7 LFFKQE--MELSLIGLQNAGKTSLVNTIATGGYSEDMI----PTVGFNMRK--VTKGN--VTIKLWDLGGQRRF------ 70 (177)
Q Consensus 7 ~~~~~~--~~i~i~G~~~~GKSsli~~l~~~~~~~~~~----~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~------ 70 (177)
+..+.. ++++|+|++|+|||||++.+++..+..... +........ ....+ ..+.++|++|....
T Consensus 35 l~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~ 114 (427)
T 2qag_B 35 KSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDS 114 (427)
T ss_dssp HSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHH
T ss_pred eEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchh
Confidence 344444 459999999999999999998764322111 111111111 12222 36889999984321
Q ss_pred --------HHhH----HHHh---------cCC--CE-EEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 030429 71 --------RTMW----ERYC---------RGV--SA-ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 126 (177)
Q Consensus 71 --------~~~~----~~~~---------~~~--d~-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~ 126 (177)
...+ ..+. .++ |+ +.++.|++.+-+ .....+...+. .+.|+|+|.||+|.
T Consensus 115 ~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~--~~Dieilk~L~----~~~~vI~Vi~KtD~ 188 (427)
T 2qag_B 115 YKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLK--SLDLVTMKKLD----SKVNIIPIIAKADA 188 (427)
T ss_dssp SHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---C--HHHHHHHHHTC----SCSEEEEEESCGGG
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCC--HHHHHHHHHHh----hCCCEEEEEcchhc
Confidence 1111 1111 122 33 555666543322 22223333322 47899999999998
Q ss_pred ccccCHHHHHHHhCcccccCCceeEEEeee
Q 030429 127 SEALSKQALVDQLGLESITDREVCCYMISC 156 (177)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (177)
....+...+.+.+.. .....+++++++|.
T Consensus 189 Lt~~E~~~l~~~I~~-~L~~~gi~I~~is~ 217 (427)
T 2qag_B 189 ISKSELTKFKIKITS-ELVSNGVQIYQFPT 217 (427)
T ss_dssp SCHHHHHHHHHHHHH-HHBTTBCCCCCCC-
T ss_pred cchHHHHHHHHHHHH-HHHHcCCcEEecCC
Confidence 876554444433321 11123445555553
No 216
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.11 E-value=4.6e-11 Score=88.94 Aligned_cols=102 Identities=16% Similarity=0.130 Sum_probs=67.6
Q ss_pred CchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC-HHHHHHHhCc--c
Q 030429 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGL--E 142 (177)
Q Consensus 66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~--~ 142 (177)
.+++|+..+..+.+.++++++|+|++++. ..|...+.... .++|+++|+||+|+.+... .++..+.+.. .
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV--GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS--SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh--CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHH
Confidence 45889999999999999999999998742 22322222221 3689999999999976432 2222221110 0
Q ss_pred cccCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 143 SITDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 143 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
....+...++++||++|.|++++++.|.+...
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~ 159 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYYRG 159 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhhcc
Confidence 01111236899999999999999999987653
No 217
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.10 E-value=1.6e-09 Score=77.38 Aligned_cols=116 Identities=20% Similarity=0.259 Sum_probs=62.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCC---------CCCccceeEEEE--EeC--CEEEEEEecCCchh---------
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSED---------MIPTVGFNMRKV--TKG--NVTIKLWDLGGQRR--------- 69 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~---------~~~t~~~~~~~~--~~~--~~~~~~~D~~g~~~--------- 69 (177)
.++++++|++|+|||||++.+++...... ...+.......+ +.. ...+.++|++|-..
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 47899999999999999999985322111 011111111111 111 13678999998311
Q ss_pred -hH--------HhHHHH----------hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc
Q 030429 70 -FR--------TMWERY----------CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 130 (177)
Q Consensus 70 -~~--------~~~~~~----------~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~ 130 (177)
.. ...... +..++++++++|.... .+......+...+.. ..++++|.||+|.....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~-gL~~lD~~~l~~L~~----~~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGH-SLRPLDLEFMKHLSK----VVNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSS-SCCHHHHHHHHHHHT----TSEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCC-cCCHHHHHHHHHHHh----cCcEEEEEeccccCCHH
Confidence 00 000111 2235888899986422 222222222333233 28999999999988754
Q ss_pred CH
Q 030429 131 SK 132 (177)
Q Consensus 131 ~~ 132 (177)
+.
T Consensus 157 e~ 158 (270)
T 3sop_A 157 EK 158 (270)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 218
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.09 E-value=3.1e-10 Score=81.51 Aligned_cols=100 Identities=16% Similarity=0.156 Sum_probs=69.7
Q ss_pred ecCCch-hhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCc
Q 030429 63 DLGGQR-RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGL 141 (177)
Q Consensus 63 D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~ 141 (177)
..||+. .........+..+|+++.|+|+.++.+..+ ..+..++ .++|.++|+||+|+.+....+.+.+.+..
T Consensus 5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~~~ 77 (282)
T 1puj_A 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHFEN 77 (282)
T ss_dssp ----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHHHh
Confidence 578875 555667778999999999999998876642 1122222 36899999999999875433344444321
Q ss_pred ccccCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 142 ESITDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 142 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
.+.+++++||+++.|++++++.+.+.+.
T Consensus 78 -----~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 78 -----QGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp -----TTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred -----cCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 2236899999999999999999887764
No 219
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.07 E-value=2.2e-11 Score=90.72 Aligned_cols=116 Identities=12% Similarity=0.104 Sum_probs=65.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC------CCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhH--------HhHHHH
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATG------GYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR--------TMWERY 77 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~------~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~ 77 (177)
..+|+++|.+|+|||||+|++.+. .......+........+..+ ..+.++||||..... .....+
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~~ 240 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE-SGATLYDTPGIINHHQMAHFVDARDLKII 240 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS-TTCEEEECCSCCCCSSGGGGSCTTTHHHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC-CCeEEEeCCCcCcHHHHHHHHhHHHHHHH
Confidence 468999999999999999999865 11111111111122222222 137889999943221 111222
Q ss_pred h--cCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHH
Q 030429 78 C--RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ 133 (177)
Q Consensus 78 ~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~ 133 (177)
+ ...+.++++++....-....+.. +......+.|+++++||.|.......+
T Consensus 241 ~~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~~~~~~~~v~~k~d~~~~~~~~ 293 (369)
T 3ec1_A 241 TPKREIHPRVYQLNEGQTLFFGGLAR-----LDYIKGGRRSFVCYMANELTVHRTKLE 293 (369)
T ss_dssp SCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEEEGG
T ss_pred hcccccCceEEEEcCCceEEECCEEE-----EEEccCCCceEEEEecCCcccccccHH
Confidence 2 56899999999832100000000 111222467999999999987654433
No 220
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.07 E-value=8.9e-11 Score=87.44 Aligned_cols=103 Identities=18% Similarity=0.230 Sum_probs=67.8
Q ss_pred CchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC-HHHHHHHhCc--c
Q 030429 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGL--E 142 (177)
Q Consensus 66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~--~ 142 (177)
.+++|++.+..+...++++++|+|++++.+ .....+... . .+.|+++|+||+|+.+... .+...+.+.. .
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~~~~l~~~---l--~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG--SFIPGLPRF---A--ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG--GCCSSHHHH---C--TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC--chhhHHHHH---h--CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHH
Confidence 368899999998899999999999998752 111111222 1 3689999999999976532 2222221110 0
Q ss_pred cccCCceeEEEeeecCCCChHHHHHHHHHHhhh
Q 030429 143 SITDREVCCYMISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 143 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
....+...++.+||++|.|++++++.+.+....
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~~ 162 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYREG 162 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHHHTT
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhhccc
Confidence 011112368999999999999999999876543
No 221
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.01 E-value=1.1e-10 Score=86.96 Aligned_cols=120 Identities=9% Similarity=0.052 Sum_probs=67.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCC-------C--CCCccceeEEEEEeCCEEEEEEecCCchhhH--------HhH
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSE-------D--MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR--------TMW 74 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-------~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~ 74 (177)
..+|+++|.+|+|||||+|++.+..... . ...|.... .+..+. .+.++||||..... ...
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~--~~~~~~-~~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLI--DIPLDE-ESSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEE--EEESSS-SCEEEECCCBCCTTSGGGGSCHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceE--EEEecC-CeEEEeCCCcCcHHHHHHHhhHHHH
Confidence 4689999999999999999998652111 1 11122221 222221 27889999953221 111
Q ss_pred HHH--hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHh
Q 030429 75 ERY--CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQL 139 (177)
Q Consensus 75 ~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~ 139 (177)
... ....+.++++++....-....+.. +......+.|+++++||+|.......+...+.+
T Consensus 237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~ 298 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEEQTLFFSGLAR-----FDYVSGGRRAFTCHFSNRLTIHRTKLEKADELY 298 (368)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEEEHHHHHHHH
T ss_pred HHhccccccCceEEEEcCCCEEEEcceEE-----EEEecCCCceEEEEecCccccccccHHHHHHHH
Confidence 222 356788999998732100000000 111222468999999999998765554444433
No 222
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.82 E-value=6.1e-10 Score=84.39 Aligned_cols=153 Identities=14% Similarity=0.136 Sum_probs=81.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC------CC---CCCCC------------------------Cccc-eeE--EEE-E
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATG------GY---SEDMI------------------------PTVG-FNM--RKV-T 53 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~------~~---~~~~~------------------------~t~~-~~~--~~~-~ 53 (177)
....|+++|++||||||+++.+... .+ ..+.. .+.. ... ..+ .
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~ 177 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 177 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999741 10 00000 0000 000 000 0
Q ss_pred eCCEEEEEEecCCchhhHH----hHHHH--hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCC-c-EEEEeeCCC
Q 030429 54 KGNVTIKLWDLGGQRRFRT----MWERY--CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGI-P-LLVLGNKID 125 (177)
Q Consensus 54 ~~~~~~~~~D~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~iiv~nK~D 125 (177)
..++++.++||||...... ..... +..+|.+++|+|++... + .......+ .. .. | ..+|+||+|
T Consensus 178 ~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~-~~~~~~~~-~~----~~~~i~gvVlnK~D 249 (432)
T 2v3c_C 178 FKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--Q-AGIQAKAF-KE----AVGEIGSIIVTKLD 249 (432)
T ss_dssp TSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--G-HHHHHHHH-HT----TSCSCEEEEEECSS
T ss_pred hhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--H-HHHHHHHH-hh----cccCCeEEEEeCCC
Confidence 1567889999999654321 11111 23589999999986532 1 22222222 21 24 5 788999999
Q ss_pred cccccC-HHHHHHHhCccccc----------CCceeEEEeeecCCCC-hHHHHHHHHH
Q 030429 126 KSEALS-KQALVDQLGLESIT----------DREVCCYMISCKDSIN-IDAVIDWLIK 171 (177)
Q Consensus 126 ~~~~~~-~~~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~-i~~l~~~l~~ 171 (177)
...... ........+..... ..+.+..++|+..|.| +..+++.+.+
T Consensus 250 ~~~~~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~ 307 (432)
T 2v3c_C 250 GSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAED 307 (432)
T ss_dssp SCSTTHHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTS
T ss_pred CccchHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHH
Confidence 864321 22233333321100 0122334677878877 7766665543
No 223
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.77 E-value=6.4e-09 Score=74.68 Aligned_cols=56 Identities=23% Similarity=0.315 Sum_probs=35.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCccceeEEEEEeCCEEEEEEecCCch
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSED---MIPTVGFNMRKVTKGNVTIKLWDLGGQR 68 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 68 (177)
+..++|+++|.||+|||||+|++.+...... ...|..... +.. +..+.+|||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW--VKV-GKELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CC--EEE-TTTEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEE--EEe-CCCEEEEECcCcC
Confidence 4568999999999999999999996553211 111222221 222 2367899999953
No 224
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.73 E-value=5e-08 Score=77.11 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGG 36 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~ 36 (177)
.++++|++|||||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 39999999999999999998653
No 225
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.68 E-value=6.5e-09 Score=73.89 Aligned_cols=55 Identities=18% Similarity=0.290 Sum_probs=34.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcccee--EEEEEeCCEEEEEEecCCchh
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN--MRKVTKGNVTIKLWDLGGQRR 69 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~D~~g~~~ 69 (177)
++++++|.+|+|||||+|++.+...... .++.+.+ ...+.. +..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~-~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSL-ENGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEEC-TTSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEe-CCCEEEEECCCccc
Confidence 6999999999999999999996654221 1111111 111221 34688999999653
No 226
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.67 E-value=1e-08 Score=77.62 Aligned_cols=112 Identities=17% Similarity=0.140 Sum_probs=63.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc------CCC---CCCCC------------CccceeEEEE-----------------
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT------GGY---SEDMI------------PTVGFNMRKV----------------- 52 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~------~~~---~~~~~------------~t~~~~~~~~----------------- 52 (177)
++..|+++|++||||||++..+.. ..+ ..+.. ...+......
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999872 111 00000 0111111110
Q ss_pred EeCCEEEEEEecCCchhh----HHhHH--HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 030429 53 TKGNVTIKLWDLGGQRRF----RTMWE--RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 126 (177)
Q Consensus 53 ~~~~~~~~~~D~~g~~~~----~~~~~--~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~ 126 (177)
...++++.++||||-... ..... .....+|.+++|+|++... +.......+... -.+..+|+||+|.
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq---~a~~~a~~f~~~----~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ---QAYNQALAFKEA----TPIGSIIVTKLDG 251 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHHS----CTTEEEEEECCSS
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch---hHHHHHHHHHhh----CCCeEEEEECCCC
Confidence 013478999999994321 11111 1233579999999997532 222222333222 2356788999998
Q ss_pred ccc
Q 030429 127 SEA 129 (177)
Q Consensus 127 ~~~ 129 (177)
...
T Consensus 252 ~~~ 254 (443)
T 3dm5_A 252 SAK 254 (443)
T ss_dssp CSS
T ss_pred ccc
Confidence 653
No 227
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.62 E-value=6.2e-08 Score=75.93 Aligned_cols=59 Identities=25% Similarity=0.257 Sum_probs=39.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC-CCC----CCccceeEEEE---EeCCEEEEEEecCCch
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYS-EDM----IPTVGFNMRKV---TKGNVTIKLWDLGGQR 68 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~----~~t~~~~~~~~---~~~~~~~~~~D~~g~~ 68 (177)
....+|+|+|.||+|||||+|++++.... ... ..|.++..... ...+..+.++||||..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 45688999999999999999999976532 111 11222222111 1356789999999954
No 228
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.51 E-value=3.7e-08 Score=69.99 Aligned_cols=93 Identities=13% Similarity=0.082 Sum_probs=61.0
Q ss_pred cCCchh-hHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcc
Q 030429 64 LGGQRR-FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLE 142 (177)
Q Consensus 64 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~ 142 (177)
.||+.. ........+..+|+++.|+|+.++.+..... +. + . ++|.++|+||+|+.+....+.+.+.+..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l-----l-~k~~iivlNK~DL~~~~~~~~~~~~~~~- 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F-----S-RKETIILLNKVDIADEKTTKKWVEFFKK- 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C-----T-TSEEEEEEECGGGSCHHHHHHHHHHHHH-
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h-----c-CCCcEEEEECccCCCHHHHHHHHHHHHH-
Confidence 467653 3345667789999999999998876554311 11 1 1 7899999999999875433444443321
Q ss_pred cccCCceeEEEeeecCCCChHHHHHHHHH
Q 030429 143 SITDREVCCYMISCKDSINIDAVIDWLIK 171 (177)
Q Consensus 143 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 171 (177)
.+.++ ++||+++.|++++++.+..
T Consensus 74 ----~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 74 ----QGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp ----TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred ----cCCeE-EEECCCCcCHHHHHHHHHH
Confidence 12356 9999999999999887654
No 229
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.49 E-value=6.7e-08 Score=73.10 Aligned_cols=111 Identities=19% Similarity=0.226 Sum_probs=62.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc------CCC---CCCCC------------CccceeEEE-----------------E
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT------GGY---SEDMI------------PTVGFNMRK-----------------V 52 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~------~~~---~~~~~------------~t~~~~~~~-----------------~ 52 (177)
.+..|+++|++||||||++..+.. ..+ ..+.. ...+..... .
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 357889999999999999999871 110 00000 001111111 0
Q ss_pred EeCCEEEEEEecCCchh------hHHhHHH--HhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 030429 53 TKGNVTIKLWDLGGQRR------FRTMWER--YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 124 (177)
Q Consensus 53 ~~~~~~~~~~D~~g~~~------~~~~~~~--~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~ 124 (177)
...++++.++||||... ....... .....+.+++|+|+.......+....+... -.+..+|+||.
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKl 248 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKM 248 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECG
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEecc
Confidence 11367888999999433 1111111 122468999999997643222322233221 24567889999
Q ss_pred Cccc
Q 030429 125 DKSE 128 (177)
Q Consensus 125 D~~~ 128 (177)
|...
T Consensus 249 D~~a 252 (433)
T 3kl4_A 249 DGTA 252 (433)
T ss_dssp GGCS
T ss_pred cccc
Confidence 9764
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.43 E-value=1.9e-07 Score=67.43 Aligned_cols=109 Identities=17% Similarity=0.140 Sum_probs=62.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc------CCC-----CCCCCC----------ccceeEEE-----------------EE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT------GGY-----SEDMIP----------TVGFNMRK-----------------VT 53 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~------~~~-----~~~~~~----------t~~~~~~~-----------------~~ 53 (177)
.-.++++|++|+||||++..+.. +.. ...... ..++.... ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 56788999999999999999872 110 000000 00111111 01
Q ss_pred eCCEEEEEEecCCchh--hHH-hHH-----HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCc-EEEEeeCC
Q 030429 54 KGNVTIKLWDLGGQRR--FRT-MWE-----RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKI 124 (177)
Q Consensus 54 ~~~~~~~~~D~~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~ 124 (177)
..++++.++||||... ... ... .....+|.+++|+|+... .+.......+.. ..| ..+|+||+
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~-----~~~i~gvVlnk~ 249 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ-----ASKIGTIIITKM 249 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH-----TCTTEEEEEECG
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh-----hCCCCEEEEeCC
Confidence 1567899999999665 322 221 124468999999998642 222222222222 244 67889999
Q ss_pred Cccc
Q 030429 125 DKSE 128 (177)
Q Consensus 125 D~~~ 128 (177)
|...
T Consensus 250 D~~~ 253 (297)
T 1j8m_F 250 DGTA 253 (297)
T ss_dssp GGCT
T ss_pred CCCc
Confidence 9754
No 231
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.38 E-value=1.8e-07 Score=67.79 Aligned_cols=85 Identities=18% Similarity=0.124 Sum_probs=57.7
Q ss_pred HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC----HHHHHHHhCcccccCCceeE
Q 030429 76 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS----KQALVDQLGLESITDREVCC 151 (177)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~ 151 (177)
..+..+|.+++|+|+.+|..-.+....+...... .++|.++|+||+|+.+... .+++.+.+... +.++
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~-----g~~v 153 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNI-----GYDV 153 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHH-----TCCE
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhC-----CCeE
Confidence 4578899999999998775544443333333233 3688899999999987633 23344443211 2368
Q ss_pred EEeeecCCCChHHHHHH
Q 030429 152 YMISCKDSINIDAVIDW 168 (177)
Q Consensus 152 ~~~Sa~~~~~i~~l~~~ 168 (177)
+.+||.++.|+++|++.
T Consensus 154 ~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 154 YLTSSKDQDSLADIIPH 170 (307)
T ss_dssp EECCHHHHTTCTTTGGG
T ss_pred EEEecCCCCCHHHHHhh
Confidence 99999999998887654
No 232
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.15 E-value=3.5e-07 Score=70.20 Aligned_cols=96 Identities=15% Similarity=0.131 Sum_probs=54.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE----EeCCEEEEEEecCCchh--hHHhH--------
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQRR--FRTMW-------- 74 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~D~~g~~~--~~~~~-------- 74 (177)
...+..|+++|.+||||||+.++|...-.. ....+..+....+ ........+||..|... ....+
T Consensus 36 ~~~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~ 114 (469)
T 1bif_A 36 TNCPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDV 114 (469)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 456689999999999999999999742110 0011111110000 01113346788888733 23332
Q ss_pred HHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHH
Q 030429 75 ERYCRGVSAILYVVDAADRDSVPIARSELHEL 106 (177)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 106 (177)
..++...++.++|+|.++. .......|....
T Consensus 115 ~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~ 145 (469)
T 1bif_A 115 RKFLSEEGGHVAVFDATNT-TRERRAMIFNFG 145 (469)
T ss_dssp HHHHHTTCCSEEEEESCCC-SHHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHH
Confidence 4456567888999999887 444444444433
No 233
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.10 E-value=1.1e-05 Score=59.56 Aligned_cols=83 Identities=13% Similarity=0.036 Sum_probs=52.3
Q ss_pred hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC---HHHHHHHhCcccccCCceeEEEe
Q 030429 78 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS---KQALVDQLGLESITDREVCCYMI 154 (177)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 154 (177)
+..+|.+++|... +|..-.+....+...... .++|.++|+||+|+.+... .+++...+. ..+.+++.+
T Consensus 128 ~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~-----~~G~~v~~~ 198 (358)
T 2rcn_A 128 AANIDQIVIVSAI-LPELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYR-----NIGYRVLMV 198 (358)
T ss_dssp EECCCEEEEEEES-TTTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHHHHHHHHHHHHHH-----TTTCCEEEC
T ss_pred HhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchhHHHHHHHHHHHH-----hCCCcEEEE
Confidence 5778999987665 565444332222222122 2678899999999987643 122333322 223468999
Q ss_pred eecCCCChHHHHHHH
Q 030429 155 SCKDSINIDAVIDWL 169 (177)
Q Consensus 155 Sa~~~~~i~~l~~~l 169 (177)
|++++.|++++...+
T Consensus 199 Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 199 SSHTQDGLKPLEEAL 213 (358)
T ss_dssp BTTTTBTHHHHHHHH
T ss_pred ecCCCcCHHHHHHhc
Confidence 999999999987654
No 234
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.09 E-value=3.7e-05 Score=58.36 Aligned_cols=112 Identities=21% Similarity=0.215 Sum_probs=62.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh-------cCCC-----CCCCCC----------ccceeEEE----------------
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIA-------TGGY-----SEDMIP----------TVGFNMRK---------------- 51 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~-------~~~~-----~~~~~~----------t~~~~~~~---------------- 51 (177)
.....|+++|.+|+||||++..|. +..+ ...... ..++....
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 345678899999999999999887 2111 010000 00111111
Q ss_pred -EEeCCEEEEEEecCCchhhH-HhHH-----HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCc-EEEEeeC
Q 030429 52 -VTKGNVTIKLWDLGGQRRFR-TMWE-----RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNK 123 (177)
Q Consensus 52 -~~~~~~~~~~~D~~g~~~~~-~~~~-----~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK 123 (177)
....++++.++||||..... .... ..+..++.+++|+|+......-. ....+.. ..+ .-+|+||
T Consensus 178 ~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~---~~~~f~~-----~l~i~gvVlnK 249 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAAN---TAKAFNE-----ALPLTGVVLTK 249 (433)
T ss_dssp HHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHH---HHHHHHH-----HSCCCCEEEEC
T ss_pred HHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHH---HHHHHhc-----cCCCeEEEEec
Confidence 01246789999999954432 1111 12446899999999875432222 2222211 122 2368999
Q ss_pred CCcccc
Q 030429 124 IDKSEA 129 (177)
Q Consensus 124 ~D~~~~ 129 (177)
+|....
T Consensus 250 ~D~~~~ 255 (433)
T 2xxa_A 250 VDGDAR 255 (433)
T ss_dssp TTSSSC
T ss_pred CCCCcc
Confidence 997543
No 235
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.93 E-value=2.4e-05 Score=59.51 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=22.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..+..-|.|+|++++|||||+|++++
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhh
Confidence 34567789999999999999999985
No 236
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.90 E-value=6.9e-06 Score=54.87 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+++++|++|||||||++.+.+
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999974
No 237
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.89 E-value=4.2e-05 Score=50.82 Aligned_cols=22 Identities=23% Similarity=0.375 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.-++++|++|||||||++++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 3588999999999999999984
No 238
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.89 E-value=7.1e-06 Score=54.38 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=24.5
Q ss_pred ecccccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 5 ISLFFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
.++..+..--++++|++|||||||++.+.
T Consensus 2 vsl~i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 2 MKLTIPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred ccccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence 45667777789999999999999999754
No 239
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.88 E-value=6.1e-06 Score=56.92 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=22.8
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++|+|++|||||||++.+.+.
T Consensus 14 ~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 14 LVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp --------CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCceecCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 346677778888999999999999999999853
No 240
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.85 E-value=1e-05 Score=56.48 Aligned_cols=32 Identities=25% Similarity=0.450 Sum_probs=27.7
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..-.++++|+.|||||||++.+.+
T Consensus 22 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 22 KNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EeeeEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 35677788888899999999999999999974
No 241
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.83 E-value=1.1e-05 Score=55.88 Aligned_cols=32 Identities=31% Similarity=0.402 Sum_probs=27.3
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..-.++++|+.|||||||++.+.+
T Consensus 21 ~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 21 KGISLSVKKGEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp EEEEEEEETTCEEEEEECTTSCHHHHHHHHTT
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34667777777899999999999999999974
No 242
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.80 E-value=1.4e-05 Score=55.81 Aligned_cols=32 Identities=19% Similarity=0.348 Sum_probs=27.4
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..-.++++|+.|||||||++.+.+
T Consensus 22 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 22 NGITFSIPEGALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34567777778899999999999999999974
No 243
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.80 E-value=1.6e-05 Score=55.74 Aligned_cols=32 Identities=16% Similarity=0.280 Sum_probs=28.1
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..-.++++|+.|||||||++.+.+
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 19 RDISFEAQPNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEEEECTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred EEeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 45677788888999999999999999999984
No 244
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.79 E-value=1.4e-05 Score=54.21 Aligned_cols=28 Identities=18% Similarity=0.388 Sum_probs=21.4
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+..+....|+++|++||||||+++.+.+
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3344566899999999999999999974
No 245
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.78 E-value=1.5e-05 Score=56.98 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=27.7
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..-.++++|+.|||||||++.+.+
T Consensus 25 ~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 25 KGINMNIKRGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp EEEEEEEETTSEEEEECCTTSSHHHHHHHHTT
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 35677778888899999999999999999974
No 246
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.78 E-value=1.9e-05 Score=55.31 Aligned_cols=32 Identities=25% Similarity=0.305 Sum_probs=26.8
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+. -.++++|+.|||||||++.+.+-
T Consensus 16 ~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 16 LNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEEEECS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred eeeEEEECC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 345677777 78999999999999999999843
No 247
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.77 E-value=1.6e-05 Score=55.97 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=27.8
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|||||||++.+.+-
T Consensus 26 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 26 DNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 345677777888999999999999999999743
No 248
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.77 E-value=1.7e-05 Score=56.27 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=27.7
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..-.++++|+.|||||||++.+.+
T Consensus 23 ~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 23 KGVSLQARAGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35677778888899999999999999999974
No 249
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.76 E-value=1.6e-05 Score=55.76 Aligned_cols=32 Identities=13% Similarity=0.203 Sum_probs=23.5
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+....|+|+|+.|||||||++.+.+
T Consensus 16 ~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 16 ENLYFQSMRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp -------CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceeccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35678888889999999999999999999975
No 250
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.76 E-value=1.6e-05 Score=56.16 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=28.2
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|||||||++.+.+-
T Consensus 24 ~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 24 DGVSISVNKGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEECCEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356777888888999999999999999999743
No 251
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.76 E-value=1.7e-05 Score=55.14 Aligned_cols=32 Identities=31% Similarity=0.370 Sum_probs=27.2
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..++..+..-.++++|+.|||||||++.+.+-
T Consensus 26 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 26 DINFKIERGQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45667777778999999999999999999843
No 252
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.76 E-value=0.00016 Score=48.96 Aligned_cols=70 Identities=10% Similarity=0.005 Sum_probs=46.3
Q ss_pred CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-CCCCcEEEEeeCCCccc
Q 030429 55 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nK~D~~~ 128 (177)
..+++.++|+|+... ......+..+|.++++...+..+ ......+..+..... ..+.++.+|+|++|...
T Consensus 74 ~~yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~ 144 (206)
T 4dzz_A 74 ADYDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA 144 (206)
T ss_dssp TTSSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE
T ss_pred CCCCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc
Confidence 357899999998652 33345566699999999875544 555555555433211 23467789999999543
No 253
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.75 E-value=1.8e-05 Score=53.05 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=22.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
++.-.++++|++|||||||++.+.+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 44567999999999999999999854
No 254
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.75 E-value=1.8e-05 Score=53.70 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=21.5
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
..++..+..-.|+++|++||||||+.+.+.
T Consensus 17 ~~~~~~~~~~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 17 NLYFQSNAMVRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHH
T ss_pred ceeEecCCCCEEEEEcCCCCCHHHHHHHHH
Confidence 455666667789999999999999999997
No 255
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.75 E-value=1.8e-05 Score=56.10 Aligned_cols=32 Identities=16% Similarity=0.355 Sum_probs=27.6
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..-.++++|+.|||||||++.+.+
T Consensus 41 ~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 41 KGINVHIREGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHc
Confidence 34677777888899999999999999999974
No 256
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.75 E-value=1.6e-05 Score=53.07 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
--++++|++|||||||++.+.+
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999985
No 257
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.75 E-value=1.7e-05 Score=56.35 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=27.9
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..-.++++|+.|||||||++.+.+
T Consensus 28 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 28 NDVSLHIASGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp EEEEEEEETTCEEEEECCTTSCHHHHHHHHTS
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 35677788888899999999999999999984
No 258
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.75 E-value=1.5e-05 Score=54.81 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=27.6
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|||||||++.+.+-
T Consensus 26 ~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 26 ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp EEEEEEEETTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 345677777778999999999999999999743
No 259
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.74 E-value=1.8e-05 Score=53.69 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=21.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..--++++|++|||||||++.+.+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3456899999999999999999853
No 260
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.74 E-value=2e-05 Score=55.46 Aligned_cols=33 Identities=27% Similarity=0.258 Sum_probs=28.2
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|||||||++.+.+-
T Consensus 17 ~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 17 GPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 456777788888999999999999999999743
No 261
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.73 E-value=2e-05 Score=56.45 Aligned_cols=32 Identities=34% Similarity=0.436 Sum_probs=27.8
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..-.++++|+.|||||||++.+.+
T Consensus 38 ~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 38 KKISWQIAKGDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp EEEEEEEETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EeeeEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 35677778888899999999999999999984
No 262
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.73 E-value=2e-05 Score=55.18 Aligned_cols=33 Identities=33% Similarity=0.356 Sum_probs=27.8
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|||||||++.+.+-
T Consensus 23 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 23 KGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345677777888999999999999999999843
No 263
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.73 E-value=2.1e-05 Score=55.74 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=28.1
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|||||||++.+.+-
T Consensus 37 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 37 KSINFFIPSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EeeEEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 345677778888999999999999999999843
No 264
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.72 E-value=2.3e-05 Score=55.73 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=28.2
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|||||||++.+.+-
T Consensus 37 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 37 RGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 346777788888999999999999999999853
No 265
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.72 E-value=2.2e-05 Score=55.33 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=28.0
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|||||||++.+.+-
T Consensus 20 ~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 20 KGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345677777888999999999999999999853
No 266
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.72 E-value=2.1e-05 Score=53.76 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=22.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+....|+|+|++|||||||++.+.+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999999873
No 267
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.72 E-value=2.3e-05 Score=55.42 Aligned_cols=33 Identities=33% Similarity=0.351 Sum_probs=27.9
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|||||||++.+.+-
T Consensus 32 ~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 32 KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 345677778888999999999999999999843
No 268
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.72 E-value=2.4e-05 Score=55.80 Aligned_cols=33 Identities=12% Similarity=0.223 Sum_probs=28.0
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++|+|+.|||||||++.+.+-
T Consensus 36 ~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 36 QGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 345677778888999999999999999999843
No 269
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.70 E-value=2.5e-05 Score=52.28 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=24.5
Q ss_pred ecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 5 ISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
.++...+..+|+++|.+||||||+.+.|...
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 3 GSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ---CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4556667789999999999999999999743
No 270
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.70 E-value=1.8e-05 Score=53.72 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.-.++|+|++|||||||++.+.+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999999974
No 271
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.70 E-value=2.4e-05 Score=51.19 Aligned_cols=31 Identities=29% Similarity=0.327 Sum_probs=25.8
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHhcCC
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGG 36 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~ 36 (177)
++..+..-.++++|+.|+|||||++.+.+..
T Consensus 27 sl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 27 KLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4555677789999999999999999998644
No 272
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.69 E-value=2.5e-05 Score=55.12 Aligned_cols=32 Identities=16% Similarity=0.335 Sum_probs=27.0
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..++..+..-.++++|+.|||||||++.+.+-
T Consensus 23 ~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 23 QLNFDLNKGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEEEETTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45667777778999999999999999999843
No 273
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.69 E-value=1.4e-05 Score=55.43 Aligned_cols=33 Identities=21% Similarity=0.155 Sum_probs=20.5
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHh-cC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIA-TG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~-~~ 35 (177)
...++..+..--++++|++|||||||++.+. +.
T Consensus 18 ~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 18 GPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp ----CCEECCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3456667777789999999999999999998 53
No 274
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.68 E-value=2.6e-05 Score=55.39 Aligned_cols=31 Identities=26% Similarity=0.425 Sum_probs=26.9
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..++..+..-.++++|+.|||||||++.+.+
T Consensus 25 ~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 25 NVSLVINEGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4567777778899999999999999999974
No 275
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.68 E-value=2.4e-05 Score=59.15 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=19.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
..-.|+++|++|+||||++..+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA 119 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLA 119 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 44568888999999999999887
No 276
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.68 E-value=3e-05 Score=52.54 Aligned_cols=30 Identities=27% Similarity=0.575 Sum_probs=23.0
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
++.....--|+|+|++|||||||++.|...
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 344555667899999999999999999843
No 277
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.67 E-value=2.9e-05 Score=52.70 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=22.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGG 36 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~ 36 (177)
+....|+++|++||||||+++.+.+..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 345679999999999999999998543
No 278
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.66 E-value=2.4e-05 Score=52.47 Aligned_cols=20 Identities=20% Similarity=0.483 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030429 15 LSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~ 34 (177)
++++|++|||||||++.+.+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999984
No 279
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.65 E-value=1.7e-05 Score=57.38 Aligned_cols=31 Identities=26% Similarity=0.274 Sum_probs=27.0
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..++..+..-.++|+|++|||||||++.+.+
T Consensus 118 ~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 118 LWLKGIPKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp HHHHTCTTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred cceEEecCCCEEEEECCCCCcHHHHHHHHhh
Confidence 3567778888999999999999999999974
No 280
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.65 E-value=3e-05 Score=52.89 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=21.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+....|+++|+.|||||||++.+.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4556899999999999999999874
No 281
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.64 E-value=2.8e-05 Score=52.88 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=22.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
-....-|+++|++||||||+++.|..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHH
Confidence 34556789999999999999999974
No 282
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.64 E-value=2.7e-05 Score=53.12 Aligned_cols=28 Identities=18% Similarity=0.166 Sum_probs=21.7
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..+..--++++|++|||||||++.+.+-
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3445567899999999999999999853
No 283
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.63 E-value=2e-05 Score=57.12 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=28.1
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..-.++|+|+.|||||||++.+.+
T Consensus 71 ~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 71 QDVSFTVMPGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EEEEEEECTTCEEEEESSSCHHHHHHHHHHTT
T ss_pred eeeeEEEcCCCEEEEECCCCchHHHHHHHHHc
Confidence 45677888888999999999999999999973
No 284
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.62 E-value=3.6e-05 Score=55.40 Aligned_cols=32 Identities=31% Similarity=0.357 Sum_probs=27.9
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..-.++++|+.|||||||++.+.+
T Consensus 55 ~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 55 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHTT
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 45677778888999999999999999999974
No 285
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.61 E-value=3.4e-05 Score=51.34 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=22.7
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.....-.++++|++|+|||||++.+.+
T Consensus 34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 34 NPEEGKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CGGGCCEEEECCSSSSSHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHH
Confidence 344567899999999999999999874
No 286
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.60 E-value=4.4e-05 Score=54.13 Aligned_cols=31 Identities=26% Similarity=0.407 Sum_probs=26.2
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..++..+ .-.++++|+.|||||||++.+.+-
T Consensus 23 ~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 23 NINLEVN-GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred eeeEEEC-CEEEEEECCCCCCHHHHHHHHhCC
Confidence 4566677 778999999999999999999854
No 287
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.57 E-value=4.7e-05 Score=56.27 Aligned_cols=32 Identities=34% Similarity=0.414 Sum_probs=27.7
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..--++++|+.|||||||++.+.+
T Consensus 21 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 21 NDISLSLDPGEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred EeeEEEEcCCCEEEEECCCCchHHHHHHHHhc
Confidence 35677777888899999999999999999985
No 288
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.57 E-value=5.1e-05 Score=56.20 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=27.8
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..-.++++|+.|||||||++.+.+
T Consensus 45 ~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 45 NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EeeEEEEcCCCEEEEEcCCCchHHHHHHHHhc
Confidence 35677778888899999999999999999984
No 289
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.57 E-value=4.3e-05 Score=50.34 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..|+++|++||||||+.+.+.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999974
No 290
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.55 E-value=5.1e-05 Score=53.12 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030429 12 EMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~ 33 (177)
...|+++|++|||||||++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999998
No 291
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.55 E-value=5e-05 Score=49.91 Aligned_cols=20 Identities=15% Similarity=0.438 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 030429 13 MELSLIGLQNAGKTSLVNTI 32 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l 32 (177)
..|+++|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 292
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.55 E-value=6.3e-05 Score=50.18 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
....|+++|++||||||+.+.|.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35679999999999999999997
No 293
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.54 E-value=5.7e-05 Score=56.26 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=27.8
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..--++++|+.|||||||++.+.+
T Consensus 20 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred eeeEEEECCCCEEEEEcCCCchHHHHHHHHHc
Confidence 35677777888899999999999999999984
No 294
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.54 E-value=5.4e-05 Score=55.94 Aligned_cols=33 Identities=24% Similarity=0.355 Sum_probs=28.0
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|||||||++.+.+-
T Consensus 32 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 32 RGVSFQIREGEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred eeeEEEECCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 356777778888999999999999999999843
No 295
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.54 E-value=5.7e-05 Score=55.91 Aligned_cols=32 Identities=25% Similarity=0.266 Sum_probs=27.6
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..-.++++|++|||||||++.+.+
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 20 DGVSFEVKDGEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHHT
T ss_pred eeeEEEEcCCCEEEEEcCCCchHHHHHHHHHC
Confidence 35677777777899999999999999999984
No 296
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.54 E-value=5.1e-05 Score=52.34 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=21.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
+..--++++|++|||||||++.+.+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 44557899999999999999999853
No 297
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.54 E-value=6e-05 Score=49.88 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..|+++|++||||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999985
No 298
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.54 E-value=6e-05 Score=55.87 Aligned_cols=33 Identities=33% Similarity=0.399 Sum_probs=28.0
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|||||||++.+.+-
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 20 NNINLKIKDGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred EeeEEEECCCCEEEEECCCCchHHHHHHHHhcC
Confidence 356777777888999999999999999999843
No 299
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.52 E-value=5.7e-05 Score=49.61 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
.|+++|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999973
No 300
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.52 E-value=4.3e-05 Score=54.52 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=22.4
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
++..++. ++++|++|+|||||++.+.+
T Consensus 40 ~l~~~~G--vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 40 GLVTPAG--VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp TCCCCSE--EEEESSTTSCHHHHHHHHHH
T ss_pred CCCCCCe--EEEECCCCCcHHHHHHHHHH
Confidence 3444555 99999999999999999984
No 301
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.51 E-value=5.9e-05 Score=51.60 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030429 13 MELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~ 33 (177)
++|+++|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999996
No 302
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.51 E-value=6.6e-05 Score=55.82 Aligned_cols=33 Identities=30% Similarity=0.321 Sum_probs=28.0
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|||||||++.+.+-
T Consensus 28 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 28 NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred eeeEEEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 356677777888999999999999999999843
No 303
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.51 E-value=5.5e-05 Score=50.67 Aligned_cols=21 Identities=19% Similarity=0.321 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
.++++|++||||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999974
No 304
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.50 E-value=6.3e-05 Score=51.52 Aligned_cols=21 Identities=43% Similarity=0.604 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030429 13 MELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~ 33 (177)
++|+++|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 369999999999999999996
No 305
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.50 E-value=6.9e-05 Score=51.15 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=21.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..--|+++|++|||||||++.|.+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3456899999999999999999854
No 306
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.49 E-value=7.1e-05 Score=56.00 Aligned_cols=32 Identities=22% Similarity=0.396 Sum_probs=28.0
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..-.++++|+.|||||||++.+.+
T Consensus 38 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 38 ENISFSISPGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred eceeEEEcCCCEEEEECCCCChHHHHHHHHhC
Confidence 45677788888899999999999999999984
No 307
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.49 E-value=6.5e-05 Score=50.44 Aligned_cols=20 Identities=20% Similarity=0.483 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030429 15 LSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~ 34 (177)
|+|+||+|||||||+++|..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999974
No 308
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.48 E-value=7e-05 Score=55.73 Aligned_cols=32 Identities=31% Similarity=0.322 Sum_probs=27.3
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..++..+..-.++++|+.|||||||++.+.+-
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 21 EMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred eeEEEEcCCCEEEEECCCCcHHHHHHHHHHcC
Confidence 45677777778999999999999999999843
No 309
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.48 E-value=7.3e-05 Score=51.50 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...|+++|++||||||+.+.+.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999874
No 310
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.48 E-value=6.7e-05 Score=55.45 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGG 36 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~ 36 (177)
-.++++|++|||||||+|.+.+..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 468999999999999999998543
No 311
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.47 E-value=8.3e-05 Score=49.80 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+..|+++|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999999973
No 312
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.46 E-value=8.7e-05 Score=51.96 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=22.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
+...+|+++|++||||||+.+.|.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999999997
No 313
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.46 E-value=7.8e-05 Score=50.52 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
+|+++|++||||||+.+.+.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999985
No 314
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.46 E-value=7.7e-05 Score=50.54 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=22.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+....|+++|++||||||+.+.+.+
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35567899999999999999999873
No 315
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.45 E-value=9e-05 Score=48.95 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...|+++|++||||||+.+.+.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999863
No 316
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.45 E-value=9.3e-05 Score=50.09 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=22.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...+..|+++|.+||||||+.+.|..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45567899999999999999999873
No 317
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.45 E-value=8.3e-05 Score=51.09 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
....|+++|.+||||||+.+.|.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999986
No 318
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.45 E-value=6.4e-05 Score=50.64 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
.++++|++|||||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 589999999999999999974
No 319
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.45 E-value=8.3e-05 Score=50.77 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030429 13 MELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~ 33 (177)
++|+++|+|||||+|...++.
T Consensus 1 M~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999997
No 320
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.44 E-value=8.6e-05 Score=53.98 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=23.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+...-|+|+|++|||||||++.+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 56778999999999999999999874
No 321
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.44 E-value=8.6e-05 Score=49.60 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...|++.|++||||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999863
No 322
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.44 E-value=5.5e-05 Score=55.77 Aligned_cols=33 Identities=27% Similarity=0.267 Sum_probs=28.1
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|||||||++.+.+-
T Consensus 17 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 17 DNLSLKVESGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEEEECTTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred eeeEEEEcCCCEEEEECCCCccHHHHHHHHHcC
Confidence 356777778788999999999999999999843
No 323
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.44 E-value=0.0001 Score=50.08 Aligned_cols=26 Identities=23% Similarity=0.493 Sum_probs=22.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
+....|+++|++||||||+++.+.+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 44568999999999999999999853
No 324
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.43 E-value=7.4e-05 Score=52.94 Aligned_cols=26 Identities=12% Similarity=0.271 Sum_probs=22.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+..-.++++|++|||||||++.+.+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHH
Confidence 34555799999999999999999974
No 325
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.43 E-value=9.6e-05 Score=50.18 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+.|+++|++||||||+.+.+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 326
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.42 E-value=6.9e-05 Score=51.28 Aligned_cols=25 Identities=24% Similarity=0.173 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..-.++++|+.|||||||++.+.+-
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3446899999999999999999854
No 327
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.42 E-value=8.4e-05 Score=50.35 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...|+++|++||||||+.+.|..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999973
No 328
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.42 E-value=0.0001 Score=49.31 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030429 12 EMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~ 33 (177)
+..|+++|.+||||||+.+.|.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999886
No 329
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.41 E-value=0.0001 Score=49.23 Aligned_cols=21 Identities=14% Similarity=0.332 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
.|+++|.+||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999873
No 330
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.41 E-value=0.0001 Score=49.81 Aligned_cols=21 Identities=24% Similarity=0.555 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
.|+++|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999974
No 331
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.40 E-value=9.2e-05 Score=51.64 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=21.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
.+..--++++|++|||||||++.++
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 3455568999999999999999887
No 332
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.39 E-value=0.0001 Score=48.82 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..|+++|++||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999974
No 333
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.39 E-value=0.00013 Score=49.37 Aligned_cols=26 Identities=19% Similarity=0.173 Sum_probs=22.3
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
...+...|+++|.+||||||+.+.|.
T Consensus 11 ~~~~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 11 SPDQVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp CTTTCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 34556789999999999999999997
No 334
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.39 E-value=0.0001 Score=50.41 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
++|+++|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999863
No 335
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.39 E-value=8.2e-05 Score=52.25 Aligned_cols=20 Identities=35% Similarity=0.549 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030429 15 LSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~ 34 (177)
++++|++|+|||||++.+.+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999984
No 336
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.38 E-value=0.00012 Score=49.71 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...|++.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999974
No 337
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.38 E-value=0.0014 Score=47.32 Aligned_cols=81 Identities=11% Similarity=0.120 Sum_probs=48.2
Q ss_pred CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEE-EEeeCCCcccccCHHH
Q 030429 56 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLL-VLGNKIDKSEALSKQA 134 (177)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-iv~nK~D~~~~~~~~~ 134 (177)
.+++.++|+|+...... ....+..+|.+++|... +..+.......+..+.......+.+++ +|.|+++.. ...++
T Consensus 156 ~yD~ViiD~p~~~~~~~-~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~--~~~~~ 231 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGG-FAAPLQHADQAVVVTAN-DFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT--DEVDR 231 (307)
T ss_dssp SCSEEEEEECCSSCCGG-GGGGGGTCSEEEEEECS-SHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC--HHHHH
T ss_pred cCCEEEEeCCCccchHH-HHHHHHHCCEEEEEecC-cHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH--HHHHH
Confidence 47889999987543221 23346779999999975 333445555555555433222445654 889999843 22345
Q ss_pred HHHHhC
Q 030429 135 LVDQLG 140 (177)
Q Consensus 135 ~~~~~~ 140 (177)
+.+.++
T Consensus 232 ~~~~~g 237 (307)
T 3end_A 232 FCKETN 237 (307)
T ss_dssp HHHHHT
T ss_pred HHHHcC
Confidence 555554
No 338
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.38 E-value=0.00011 Score=50.75 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=20.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
+...|+++|.+||||||+.+.|.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 44689999999999999999997
No 339
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.38 E-value=5.3e-05 Score=56.01 Aligned_cols=32 Identities=22% Similarity=0.404 Sum_probs=27.6
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..++..+..-.++++|+.|||||||++.+.+-
T Consensus 23 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 23 NVNINIENGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEEECTTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred ceEEEECCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 56777778788999999999999999999843
No 340
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.37 E-value=9.4e-05 Score=54.91 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=24.5
Q ss_pred cccccc--eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 6 SLFFKQ--EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 6 ~~~~~~--~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
++.... .-+++|+|++|||||||++.+.+
T Consensus 162 ~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 162 PKEARPFFAKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CTTTGGGTCEEEEEECCTTSHHHHHHHHHHH
T ss_pred CHHHHHhhhCeEEEECCCCCCHHHHHHHHHH
Confidence 444555 77999999999999999999974
No 341
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.37 E-value=0.00013 Score=49.38 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...|+++|.+||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999843
No 342
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.37 E-value=0.00012 Score=49.11 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
+...|+++|.+||||||+.+.|.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999986
No 343
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.36 E-value=3.3e-05 Score=57.31 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=25.6
Q ss_pred ecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 5 ISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.++..+..-.++++|++|||||||++.+.+
T Consensus 168 l~~~i~~G~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 168 LRRAVQLERVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp HHHHHHTTCCEEEEESSSSCHHHHHHHHHT
T ss_pred HHHHHhcCCEEEEECCCCCCHHHHHHHHHh
Confidence 455566777999999999999999999984
No 344
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.36 E-value=0.00014 Score=52.65 Aligned_cols=30 Identities=23% Similarity=0.513 Sum_probs=24.8
Q ss_pred ecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 5 ISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.++..+..-.++++|++||||||+++.+.+
T Consensus 93 l~~~~~~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 93 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CCCCSSSCEEEEEECCTTSCHHHHHHHHHH
T ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 344556677899999999999999999973
No 345
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.35 E-value=0.00013 Score=48.58 Aligned_cols=22 Identities=45% Similarity=0.575 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030429 12 EMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~ 33 (177)
...|+++|++||||||+.+.+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3479999999999999999996
No 346
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.34 E-value=0.00017 Score=48.19 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=21.9
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
..+...|+++|.+||||||+.+.+.
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~ 34 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLA 34 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHH
Confidence 3456789999999999999999986
No 347
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.34 E-value=0.00014 Score=49.56 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+...|+++|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999973
No 348
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.33 E-value=0.00012 Score=50.44 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=21.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+..--++++|++|||||||++.+++
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3445689999999999999999975
No 349
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.33 E-value=3.6e-05 Score=55.73 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=21.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...-.++++|++|||||||+|.+.+.
T Consensus 171 ~~G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 171 FQDKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp GTTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred cCCCEEEEECCCCCCHHHHHHHhccc
Confidence 34568999999999999999999853
No 350
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.33 E-value=0.00014 Score=52.55 Aligned_cols=24 Identities=38% Similarity=0.582 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
.-.++++|++|||||||+|.+.+.
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred CCeEEEECCCCCcHHHHHHHhccc
Confidence 346799999999999999999854
No 351
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.33 E-value=0.00012 Score=53.01 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030429 12 EMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~ 33 (177)
.-.++++|++|||||||+|.+.
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3467999999999999999998
No 352
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.33 E-value=0.00014 Score=49.44 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+...|+++|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999973
No 353
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.32 E-value=0.00012 Score=50.39 Aligned_cols=23 Identities=17% Similarity=0.344 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
....|+|+|++||||||+.+.|.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999987
No 354
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.32 E-value=0.00016 Score=52.68 Aligned_cols=24 Identities=17% Similarity=0.273 Sum_probs=21.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
+..+-|+|+|++|||||||++.+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999986
No 355
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.32 E-value=0.00012 Score=48.32 Aligned_cols=20 Identities=30% Similarity=0.680 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030429 14 ELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~ 33 (177)
+|+++|++||||||+.+.+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 68999999999999999987
No 356
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.31 E-value=0.00017 Score=48.90 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=22.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+....|+++|++|||||||++.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45567899999999999999999873
No 357
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.31 E-value=0.00016 Score=47.36 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
+|+++|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
No 358
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.31 E-value=0.00017 Score=48.63 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=22.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
.+...|+|+|++||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45678999999999999999999854
No 359
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.29 E-value=0.00018 Score=49.42 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
+..+|+++|.+||||||+.+.|.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999986
No 360
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.29 E-value=0.00012 Score=52.12 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030429 15 LSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~~ 35 (177)
++++|++|+|||||++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999999843
No 361
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.29 E-value=0.00014 Score=48.94 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
....|+++|.+||||||+.+.|..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999973
No 362
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.28 E-value=0.0002 Score=47.78 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...|+++|.+||||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999863
No 363
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.28 E-value=0.00018 Score=51.68 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=22.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...+.-|++.|++||||||+.+.+..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999973
No 364
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.28 E-value=0.00017 Score=50.72 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
....|+|+|++||||||+++.+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 44689999999999999999997
No 365
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.28 E-value=0.00017 Score=49.71 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030429 14 ELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~ 33 (177)
.|+++|++||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999986
No 366
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.28 E-value=0.00017 Score=47.90 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
....|+++|.+||||||+.+.+.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 44579999999999999999997
No 367
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.28 E-value=0.00018 Score=52.22 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=22.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.....|+|+|++|||||||++.+.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5567899999999999999999974
No 368
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.27 E-value=0.00017 Score=56.90 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=28.0
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..-.++++|+.|||||||++.+.+
T Consensus 360 ~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 360 RNINLKIPAGKTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp EEEEEEECTTCEEEEEECTTSSHHHHHHHHTT
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 45677788888999999999999999999974
No 369
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.26 E-value=0.00021 Score=47.40 Aligned_cols=25 Identities=28% Similarity=0.394 Sum_probs=21.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+...|+++|.+||||||+.+.|..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999974
No 370
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.26 E-value=0.00014 Score=53.83 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
=.++++|++|||||||++.+.+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3799999999999999999973
No 371
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.26 E-value=5.1e-05 Score=58.80 Aligned_cols=28 Identities=25% Similarity=0.430 Sum_probs=23.6
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+..+..-.++++|++|||||||++.+.+
T Consensus 255 ~~v~~g~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 255 LAIEHKFSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp HHHHTTCCEEEEESTTSSHHHHHHHHGG
T ss_pred HHHhCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4445566799999999999999999984
No 372
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.26 E-value=0.00012 Score=48.54 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=16.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+...|+++|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999963
No 373
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.25 E-value=0.00019 Score=55.15 Aligned_cols=31 Identities=19% Similarity=0.375 Sum_probs=26.0
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..++..+..-.++|+|++|||||||++.+.+
T Consensus 285 ~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 285 PLNVEGKAPFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp CCCCCSCTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceeeccCCeEEEEECCCcccHHHHHHHHHH
Confidence 3456667778899999999999999999973
No 374
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.25 E-value=0.00012 Score=47.33 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.-.++++|++|+|||||++.+.+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999984
No 375
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.24 E-value=0.00022 Score=51.23 Aligned_cols=25 Identities=24% Similarity=0.135 Sum_probs=22.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
.+....|+|.|++|||||||++.+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4567889999999999999999886
No 376
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.24 E-value=8e-05 Score=54.57 Aligned_cols=30 Identities=17% Similarity=0.112 Sum_probs=24.6
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
++..+..-.++++|++|||||||++.+.+-
T Consensus 165 ~~~i~~g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 165 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp HHHHHHTCCEEEEESTTSCHHHHHHHGGGG
T ss_pred hhhccCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344555668999999999999999999843
No 377
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.23 E-value=0.00024 Score=48.71 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
++.|+|+|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999974
No 378
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.23 E-value=0.00022 Score=50.12 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=21.7
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...+.+.|+|.|.+||||||+.+.|..
T Consensus 18 ~~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 18 NGGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 344567899999999999999999864
No 379
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.23 E-value=0.00022 Score=52.76 Aligned_cols=30 Identities=23% Similarity=0.513 Sum_probs=24.9
Q ss_pred ecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 5 ISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.++..+..-.++++|++||||||++..+.+
T Consensus 150 l~l~~~~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 150 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp CCCCSSSSEEEEEECCTTSCHHHHHHHHHH
T ss_pred cceecCCCeEEEEEcCCCChHHHHHHHHHh
Confidence 345556677899999999999999999973
No 380
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.23 E-value=0.00021 Score=47.79 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
.|+++|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999974
No 381
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.22 E-value=0.00015 Score=51.07 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=22.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+.+..|+++|++||||||+.+.+..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45567899999999999999999863
No 382
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.22 E-value=0.00023 Score=49.39 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
....+|+++|.+||||||+.+.|.
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 344689999999999999999987
No 383
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.21 E-value=0.0002 Score=56.50 Aligned_cols=32 Identities=25% Similarity=0.469 Sum_probs=27.8
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..-.++++|+.|||||||++.+.+
T Consensus 360 ~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 360 SHVSFSIPQGKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred ccceEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34677778888999999999999999999984
No 384
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.21 E-value=0.0022 Score=43.71 Aligned_cols=68 Identities=9% Similarity=-0.043 Sum_probs=44.4
Q ss_pred CCEEEEEEecCCc-hhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 55 GNVTIKLWDLGGQ-RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 55 ~~~~~~~~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
..+++.++|+|+. ... .....+..+|.++++...+. .+.......+..+.... +.++.+|+|+.|...
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~-~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDA-LALDALMLTIETLQKLG---NNRFRILLTIIPPYP 134 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSH-HHHHHHHHHHHHHHHTC---SSSEEEEECSBCCTT
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCc-hhHHHHHHHHHHHHhcc---CCCEEEEEEecCCcc
Confidence 3578899999986 433 23445677999999998632 33444444444443321 456889999998754
No 385
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.20 E-value=0.00017 Score=57.06 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=28.0
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..-.++++|+.|||||||++.+.+
T Consensus 361 ~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 361 QDFSLSIPSGSVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp EEEEEEECTTCEEEEECCTTSSSTHHHHHHTT
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35677788888999999999999999999974
No 386
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.20 E-value=0.00021 Score=49.52 Aligned_cols=28 Identities=21% Similarity=0.167 Sum_probs=23.9
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..++..-|+|.|+.||||||+++.+.+.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 4456778999999999999999999753
No 387
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.19 E-value=0.0003 Score=46.70 Aligned_cols=28 Identities=18% Similarity=0.362 Sum_probs=21.6
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+..... -.+|+|+.|||||||++.+..
T Consensus 21 ~~~~~~g-~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 21 VIPFSKG-FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEECCSS-EEEEEECTTSSHHHHHHHHHH
T ss_pred EEecCCC-cEEEECCCCCCHHHHHHHHHH
Confidence 3444445 458999999999999999863
No 388
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.18 E-value=0.00025 Score=47.58 Aligned_cols=21 Identities=19% Similarity=0.483 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
-|++.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999973
No 389
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.18 E-value=0.00022 Score=50.22 Aligned_cols=21 Identities=29% Similarity=0.290 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
-|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999863
No 390
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.18 E-value=0.0001 Score=48.86 Aligned_cols=20 Identities=35% Similarity=0.687 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030429 14 ELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~ 33 (177)
.++|+|++|||||||++.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~ 23 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMM 23 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999997
No 391
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.18 E-value=0.00026 Score=46.96 Aligned_cols=24 Identities=33% Similarity=0.464 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..-.+++.|++|+|||+|++.+..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999874
No 392
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.18 E-value=0.0001 Score=51.88 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=24.2
Q ss_pred ecccccc---eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 5 ISLFFKQ---EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 5 ~~~~~~~---~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.++..+. .-.|+++|++||||||+.+.+..
T Consensus 38 ~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 38 KAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp HHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred hhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3444555 66899999999999999999973
No 393
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.18 E-value=0.00026 Score=49.21 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
.++.|++.|++||||||+.+.+.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999987
No 394
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.18 E-value=0.00027 Score=46.29 Aligned_cols=21 Identities=38% Similarity=0.646 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
+|+++|.+||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999863
No 395
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.17 E-value=0.00019 Score=56.76 Aligned_cols=32 Identities=28% Similarity=0.514 Sum_probs=28.0
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+.++..+..-.++++|+.|||||||++.+.+
T Consensus 372 ~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 372 KDITFHIKPGQKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp CSEEEECCTTCEEEEECCTTSSTTHHHHHHTT
T ss_pred cceEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 45677788888999999999999999999974
No 396
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.17 E-value=0.00028 Score=49.83 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...|+++|.+||||||+.+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999873
No 397
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.00015 Score=55.50 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=25.4
Q ss_pred ecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 5 ISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.++..+..-.++|+|+.|||||||++.+++
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHH
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 345566777899999999999999999974
No 398
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.15 E-value=0.00027 Score=46.46 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999873
No 399
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.15 E-value=0.00032 Score=50.19 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
.+....|+|+|.+||||||+.+.|.
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999999999997
No 400
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.14 E-value=0.00015 Score=57.04 Aligned_cols=32 Identities=25% Similarity=0.524 Sum_probs=28.1
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..-.++++|+.|||||||++.+.+
T Consensus 358 ~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 358 KDINLSIEKGETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHTTTTT
T ss_pred eeeEEEECCCCEEEEECCCCChHHHHHHHHhc
Confidence 45677888888999999999999999999873
No 401
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.14 E-value=0.00023 Score=51.49 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
..-.++++|++||||||+++.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 45689999999999999999997
No 402
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.13 E-value=0.00028 Score=46.96 Aligned_cols=21 Identities=29% Similarity=0.567 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999863
No 403
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.12 E-value=0.00026 Score=52.75 Aligned_cols=25 Identities=12% Similarity=0.283 Sum_probs=21.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+..-.++++|++|||||||++.+.+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4455799999999999999999974
No 404
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.11 E-value=0.00038 Score=47.87 Aligned_cols=20 Identities=15% Similarity=0.313 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030429 14 ELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~ 33 (177)
-|+++|+|||||+|....+.
T Consensus 31 iI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46779999999999999997
No 405
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.11 E-value=0.00034 Score=51.19 Aligned_cols=25 Identities=20% Similarity=0.514 Sum_probs=22.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+++--++++|++||||||+++.+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999973
No 406
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.10 E-value=0.00022 Score=56.32 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=28.1
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..-.++++|+.|||||||++.+.+
T Consensus 360 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 360 SGVNFSVKPGSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp EEEEEEECTTCEEEEECSSSSSHHHHHHTTTT
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45677888888999999999999999999974
No 407
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.10 E-value=0.00025 Score=53.56 Aligned_cols=23 Identities=13% Similarity=0.128 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.=.++|+|++|||||||++.+.+
T Consensus 167 ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999999974
No 408
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.09 E-value=0.00035 Score=47.67 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=22.2
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
..+....|+++|.+||||||+.+.+.
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~ 46 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELE 46 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 34556789999999999999999986
No 409
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.09 E-value=0.00038 Score=53.48 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=25.1
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..++..+. -.++|+|+.|||||||++.+.+
T Consensus 22 ~vsl~i~~-e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 22 ARTFDFDE-LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCS-SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEcc-ceEEEECCCCCcHHHHHHHHhc
Confidence 45566666 7789999999999999999973
No 410
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.09 E-value=0.00031 Score=48.28 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=20.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
+..--++++|++|+|||||+..++
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHH
Confidence 344568899999999999999997
No 411
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.08 E-value=0.00044 Score=51.34 Aligned_cols=28 Identities=29% Similarity=0.497 Sum_probs=22.5
Q ss_pred ecccccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 5 ISLFFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
..+..+..+ .+|+|+.|+|||||++.++
T Consensus 17 ~~i~~~~g~-~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 17 VDIEFQSGI-TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCSEE-EEEECCTTSSHHHHHHHHH
T ss_pred eEEecCCCe-EEEECCCCCCHHHHHHHHH
Confidence 345556676 4589999999999999986
No 412
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.08 E-value=0.00035 Score=46.09 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..++++|.+|||||||+.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999973
No 413
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.08 E-value=0.00044 Score=47.96 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=22.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.....|++.|++||||||+++.+..
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3667899999999999999999974
No 414
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.07 E-value=0.00011 Score=50.00 Aligned_cols=20 Identities=30% Similarity=0.612 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030429 14 ELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~ 33 (177)
-|+|.|.+||||||+++.|.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 48999999999999999986
No 415
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.07 E-value=0.00029 Score=51.60 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
-.++++|++|+|||||++.+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4589999999999999999984
No 416
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.02 E-value=0.0004 Score=51.77 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=24.8
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
++..+..-.++++|++|+|||||++.+.+
T Consensus 163 ~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 163 VYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 44566777899999999999999999984
No 417
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.02 E-value=0.0003 Score=46.46 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..-.+++.|++|+|||++++.+..
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999874
No 418
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.00 E-value=0.00046 Score=57.28 Aligned_cols=35 Identities=26% Similarity=0.402 Sum_probs=29.5
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcCCC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATGGY 37 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~ 37 (177)
...++..+..-.++++|+.|||||||++.+.++..
T Consensus 452 ~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 452 NKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCS
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 34677777888899999999999999999986543
No 419
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.00 E-value=0.0006 Score=45.96 Aligned_cols=25 Identities=16% Similarity=0.407 Sum_probs=22.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.....|+++|.+||||||+.+.|..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999974
No 420
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.99 E-value=0.00048 Score=47.52 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..-.+++.|++|+|||+|++.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999873
No 421
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.97 E-value=0.00052 Score=44.30 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=18.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
...++ +|+|+.|+|||||+.++.
T Consensus 22 ~~g~~-~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 22 KEGIN-LIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp CSEEE-EEECCTTSSHHHHHHHHH
T ss_pred CCCeE-EEECCCCCCHHHHHHHHH
Confidence 34454 788999999999999985
No 422
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.97 E-value=0.00054 Score=48.12 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+..++++|++|+|||||++.+.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 34699999999999999999974
No 423
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.96 E-value=0.00045 Score=49.64 Aligned_cols=28 Identities=18% Similarity=0.118 Sum_probs=22.7
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+..+..--++|+|++|+|||||+..+.+
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3445555789999999999999999874
No 424
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.95 E-value=0.00049 Score=46.95 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=21.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+..--++++|++|+|||||+..+..
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3445689999999999999999985
No 425
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.94 E-value=0.0005 Score=44.03 Aligned_cols=26 Identities=12% Similarity=0.200 Sum_probs=22.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
.....|++.|++|+|||++.+.+...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 45668999999999999999999743
No 426
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.94 E-value=0.00058 Score=53.30 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=23.7
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..+..-.++++|+.|||||||++.+.+-
T Consensus 43 ~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 43 VVKEGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456668999999999999999999853
No 427
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.93 E-value=0.00059 Score=46.07 Aligned_cols=22 Identities=41% Similarity=0.418 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..+++.|++|+|||+|+..+.+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999874
No 428
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.92 E-value=0.00054 Score=47.48 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=21.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+..--++++|++|+|||||+..++.
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3445689999999999999999985
No 429
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.92 E-value=0.0006 Score=49.02 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=21.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+.+.-+++.|+||+|||+|.+.+..
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3446788889999999999999973
No 430
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.92 E-value=0.0005 Score=50.68 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=24.8
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
+...+.=+++++|++|+|||||++.+.+.
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44566678999999999999999999854
No 431
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.91 E-value=0.00065 Score=48.83 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..|+++|.+||||||+.+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999974
No 432
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.90 E-value=0.00066 Score=47.12 Aligned_cols=25 Identities=20% Similarity=0.462 Sum_probs=21.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.....|+++|++||||||+.+.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999874
No 433
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.90 E-value=0.00035 Score=60.01 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=29.0
Q ss_pred ceeecccccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 2 YLHISLFFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 2 ~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
.++.++..+..-+|+++|++|||||||++.+.
T Consensus 1095 L~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~ 1126 (1321)
T 4f4c_A 1095 LKGLSFSVEPGQTLALVGPSGCGKSTVVALLE 1126 (1321)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSTTSHHHHHT
T ss_pred ccceeEEECCCCEEEEECCCCChHHHHHHHHh
Confidence 35678888899999999999999999999997
No 434
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.86 E-value=0.00075 Score=46.76 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=20.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
..++++++|+|||||||+...+.
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~ 29 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIK 29 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHH
Confidence 46789999999999999999987
No 435
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.84 E-value=0.00021 Score=53.82 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=25.2
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
...++..... .++|+|+.|+|||||++.+.
T Consensus 52 ~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 52 TQLELELGGG-FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp EEEEEECCSS-EEEEEESHHHHHHHHTHHHH
T ss_pred eeEEEecCCC-cEEEECCCCCCHHHHHHHHH
Confidence 3456777778 88999999999999998874
No 436
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.83 E-value=0.00067 Score=52.97 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=23.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
.+..-.++++|+.|||||||++.+.+-
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 355668999999999999999999854
No 437
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.82 E-value=0.00055 Score=49.84 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~ 35 (177)
-++++|+.|||||||++.+.+.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 5689999999999999999854
No 438
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.81 E-value=0.00062 Score=46.30 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.-.+++.|+||+||||++.++.+
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999888863
No 439
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.81 E-value=0.00075 Score=45.75 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+++.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999873
No 440
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.81 E-value=0.00075 Score=51.33 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=24.8
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
+...+.=+++++|++|||||||++.+.+.
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45566778999999999999999999854
No 441
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.81 E-value=0.00084 Score=47.79 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=21.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+..-.+++.|++|+|||+|++.+..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3456799999999999999999974
No 442
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.81 E-value=0.00067 Score=52.95 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=22.9
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
.+..-.++++|+.|||||||++.+.+-
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 455667899999999999999999853
No 443
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.81 E-value=0.00091 Score=46.89 Aligned_cols=25 Identities=36% Similarity=0.417 Sum_probs=21.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+..-.+++.|++|+|||++++.+..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3445689999999999999999974
No 444
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.80 E-value=0.00075 Score=46.33 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+++.|++|+|||||++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999874
No 445
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.79 E-value=0.00073 Score=48.42 Aligned_cols=23 Identities=39% Similarity=0.466 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.-.+++.|++|+|||++++.+.+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 56899999999999999999974
No 446
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.78 E-value=0.00078 Score=53.34 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=23.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
.+..-.++++|+.|+|||||++.+.+-
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 455667899999999999999999854
No 447
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.77 E-value=0.00078 Score=57.95 Aligned_cols=32 Identities=16% Similarity=0.363 Sum_probs=28.7
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+.++..+..-.++++|+.|||||||++.+.+
T Consensus 435 ~~isl~i~~G~~vaivG~sGsGKSTll~ll~~ 466 (1321)
T 4f4c_A 435 RGMNLRVNAGQTVALVGSSGCGKSTIISLLLR 466 (1321)
T ss_dssp EEEEEEECTTCEEEEEECSSSCHHHHHHHHTT
T ss_pred eceEEeecCCcEEEEEecCCCcHHHHHHHhcc
Confidence 56778888899999999999999999999973
No 448
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.77 E-value=0.00084 Score=48.41 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=21.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+..-.|++.|++|+|||+|++.+.+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHH
Confidence 4455799999999999999999984
No 449
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.77 E-value=0.00096 Score=48.02 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=20.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
+....+++.|++|+|||++++.+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHH
Confidence 344579999999999999998765
No 450
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.75 E-value=0.00083 Score=47.83 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..--++|+|++|+|||||+..+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 445689999999999999999874
No 451
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.74 E-value=0.00046 Score=57.28 Aligned_cols=33 Identities=24% Similarity=0.435 Sum_probs=28.0
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++|+|+.|||||||++.+.+-
T Consensus 690 ~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGl 722 (986)
T 2iw3_A 690 TDINFQCSLSSRIAVIGPNGAGKSTLINVLTGE 722 (986)
T ss_dssp EEEEEEEETTCEEEECSCCCHHHHHHHHHHTTS
T ss_pred eccEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345677778889999999999999999999853
No 452
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.74 E-value=0.0013 Score=47.69 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=21.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
.+..-.|+++|++||||||++..+.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHH
Confidence 3455678999999999999999987
No 453
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.74 E-value=0.0013 Score=48.27 Aligned_cols=27 Identities=33% Similarity=0.596 Sum_probs=21.2
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
.+.....++ +|+|+.|+|||||+.++.
T Consensus 18 ~i~f~~~~~-~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 18 VVEFKEGIN-LIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEECCSEEE-EEECCTTSSHHHHHHHHH
T ss_pred EEcCCCCeE-EEECCCCCCHHHHHHHHH
Confidence 344455666 689999999999999874
No 454
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.73 E-value=0.0011 Score=44.87 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
.|+|.|++||||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999863
No 455
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.71 E-value=0.00099 Score=52.00 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..--++++|+.|||||||++.+.+-
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3356799999999999999999853
No 456
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.71 E-value=0.00089 Score=52.99 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=22.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
+..-.++++|+.|+|||||++.+.+-
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcC
Confidence 34557899999999999999999853
No 457
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.69 E-value=0.0013 Score=46.51 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=22.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
......+++.|++|+|||++++.+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 34567899999999999999999974
No 458
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.69 E-value=0.0011 Score=52.53 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=23.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
.+..-.++++|+.|+|||||++.+.+-
T Consensus 114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhCC
Confidence 455667999999999999999999853
No 459
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.69 E-value=0.00088 Score=57.45 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=28.3
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..-.++++|+.|||||||++.+.+
T Consensus 407 ~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g 438 (1284)
T 3g5u_A 407 KGLNLKVKSGQTVALVGNSGCGKSTTVQLMQR 438 (1284)
T ss_dssp EEEEEEECTTCEEEEECCSSSSHHHHHHHTTT
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45678888888999999999999999999973
No 460
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.69 E-value=0.00094 Score=51.60 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
.++++|++|+|||+|++.+.+
T Consensus 66 GvLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999999984
No 461
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.68 E-value=0.0011 Score=46.05 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=19.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
..--++++|++|+|||||+.+++
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34467999999999999987775
No 462
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.67 E-value=0.001 Score=48.39 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.-.+++.|++|+|||+|++.+.+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 35689999999999999999974
No 463
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.65 E-value=0.0012 Score=43.92 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030429 15 LSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~~ 35 (177)
++|+|.+|||||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999844
No 464
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.64 E-value=0.00055 Score=43.74 Aligned_cols=24 Identities=13% Similarity=0.102 Sum_probs=20.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
+....|++.|++|+|||++.+.+.
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGC
T ss_pred CCCCcEEEECCCCccHHHHHHHHH
Confidence 345679999999999999999986
No 465
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.64 E-value=0.0016 Score=48.20 Aligned_cols=30 Identities=27% Similarity=0.300 Sum_probs=24.0
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..++..+.. -.+++|+.|+|||||++.+..
T Consensus 19 ~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 19 PGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 345556666 678999999999999999873
No 466
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.63 E-value=0.0013 Score=49.63 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=21.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
....-|+++|.+||||||+.+++..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999999974
No 467
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.61 E-value=0.0008 Score=53.94 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=25.1
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHH
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTI 32 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l 32 (177)
...++..+..-.++|+|+.|||||||++.+
T Consensus 339 ~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 339 KNVSVKIPLGTFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp CSEEEEEETTSEEEEECSTTSSHHHHHTTT
T ss_pred ccceeEecCCCEEEEEeeCCCCHHHHHHHH
Confidence 346677778888999999999999999754
No 468
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.61 E-value=0.0012 Score=49.97 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=21.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+.+--|++.|+||+|||+|++++.+
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3344699999999999999999983
No 469
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.61 E-value=0.0012 Score=49.96 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=22.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+.+-.|++.||||+|||+|.+++.+
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHH
Confidence 34456799999999999999999983
No 470
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.59 E-value=0.0018 Score=47.17 Aligned_cols=30 Identities=23% Similarity=0.340 Sum_probs=24.8
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
..++..+..-.|+++|++|+||||++..+.
T Consensus 97 ~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA 126 (320)
T 1zu4_A 97 RIDFKENRLNIFMLVGVNGTGKTTSLAKMA 126 (320)
T ss_dssp CCCCCTTSCEEEEEESSTTSSHHHHHHHHH
T ss_pred CccccCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 345555667789999999999999999887
No 471
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.59 E-value=0.0012 Score=48.65 Aligned_cols=27 Identities=26% Similarity=0.334 Sum_probs=22.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
.+..--+.|+|++|+|||||+..++..
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 445567899999999999999999843
No 472
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.58 E-value=0.0016 Score=45.24 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...|++.|..||||||+++.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999999974
No 473
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.58 E-value=0.0013 Score=44.92 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+..|+++|++||||||+.+.+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998874
No 474
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.58 E-value=0.0018 Score=43.75 Aligned_cols=26 Identities=12% Similarity=0.152 Sum_probs=21.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
.....|+|+|++|+|||||...|...
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34567999999999999999999843
No 475
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.57 E-value=0.0013 Score=47.15 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
....+++.|++|+|||++++.+..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999973
No 476
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.57 E-value=0.003 Score=48.07 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=19.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
.-.-|.|+|+.++|||+|+|.++
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 44667799999999999999654
No 477
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.56 E-value=0.00092 Score=47.18 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=21.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.++...|+|.|..||||||+++.|..
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999873
No 478
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.55 E-value=0.00075 Score=48.49 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=17.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+...|+|.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998863
No 479
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.55 E-value=0.0014 Score=47.84 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.-.|++.|+||+|||+|++.+..
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHH
Confidence 35799999999999999999984
No 480
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.54 E-value=0.0017 Score=51.39 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~ 35 (177)
.++++|+.|||||||++.+.+-
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5899999999999999999854
No 481
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.54 E-value=0.0015 Score=48.25 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=21.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...-.+++.|++|+|||||++.+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3455799999999999999999974
No 482
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.53 E-value=0.0016 Score=44.20 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=18.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
...++ +|+|+.|+||||++.++.
T Consensus 22 ~~~~~-~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 22 KEGIN-LIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp CSEEE-EEECCTTSSHHHHHHHHH
T ss_pred CCCeE-EEEcCCCCCHHHHHHHHH
Confidence 34444 778999999999999885
No 483
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.53 E-value=0.0021 Score=47.44 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=20.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
+..+|+++|++|+||||+.+.+.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHH
Confidence 34679999999999999998776
No 484
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.52 E-value=0.0011 Score=51.85 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=22.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.++...|+++|++|||||||++.+.+
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHH
Confidence 45667899999999999999999974
No 485
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.51 E-value=0.0017 Score=46.78 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
..-.++++|++|+||||++..+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999986
No 486
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.51 E-value=0.0017 Score=48.15 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
.++|.|++|+|||||++.+.+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999974
No 487
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.51 E-value=0.0016 Score=47.34 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...+++.|+||+|||+|++.+..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999999974
No 488
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.51 E-value=0.0018 Score=47.22 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..|+|+|++|||||||...+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999873
No 489
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.50 E-value=0.0011 Score=48.57 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+++.|++|+||||+++.+.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999999875
No 490
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.50 E-value=0.0017 Score=46.70 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
-.+++.|++|+|||++++.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999874
No 491
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.50 E-value=0.0015 Score=56.14 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=28.1
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..-+++++|+.|||||||++.+.+
T Consensus 1050 ~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g 1081 (1284)
T 3g5u_A 1050 QGLSLEVKKGQTLALVGSSGCGKSTVVQLLER 1081 (1284)
T ss_dssp SSCCEEECSSSEEEEECSSSTTHHHHHHHHTT
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 45677788888999999999999999999984
No 492
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.48 E-value=0.0015 Score=48.96 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=22.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+.+--|++.||||+|||+|.+++.+
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHH
Confidence 34456799999999999999999983
No 493
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.48 E-value=0.0017 Score=47.66 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.-|+|+|++|||||||...+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999999873
No 494
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.47 E-value=0.0017 Score=49.28 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=22.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+.+--|++.||||+|||+|.+++.+
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 34456899999999999999999983
No 495
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.45 E-value=0.0017 Score=47.57 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+++.|++|+||||+++.+.+
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999974
No 496
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.45 E-value=0.0016 Score=50.07 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
-.|+++|+||+|||+|++.+.+
T Consensus 50 ~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3499999999999999999984
No 497
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.41 E-value=0.00079 Score=47.52 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
-.+++.|++|+|||+|++.+..
T Consensus 45 ~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHH
Confidence 3489999999999999999974
No 498
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.41 E-value=0.0015 Score=52.43 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=23.8
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHH
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLV 29 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli 29 (177)
...++..+..-.++++|+.|||||||+
T Consensus 35 ~~vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 35 KNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp CSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred eccEEEECCCCEEEEECCCCCCHHHHh
Confidence 356788888889999999999999996
No 499
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.40 E-value=0.0017 Score=47.97 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=21.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...-.+++.|++|+||||+++.+..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHH
Confidence 4556899999999999999999973
No 500
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.40 E-value=0.0019 Score=48.55 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=19.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
..--++|+|++|+|||||+..++
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHH
Confidence 33458999999999999999775
Done!