BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030433
         (177 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DJ0|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
           Thioredoxin-Related Transmembrane Protein 2
          Length = 137

 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 54/103 (52%)

Query: 67  WLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQL 126
           W+VEF A  S+ C   + I+ +LS+ Y+   ++FG VD+G + + + ++ +S      QL
Sbjct: 29  WIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQL 88

Query: 127 PTYILFENNAEINRFPAFGFEEKFSHPHITKKLIAHHFQLDRL 169
           PT ILF+   E  R P    + +      +++ +   F L+ L
Sbjct: 89  PTLILFQGGKEAMRRPQIDKKGRAVSWTFSEENVIREFNLNEL 131


>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
 pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
          Length = 118

 Score = 38.9 bits (89), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 3/65 (4%)

Query: 55  EALLTEGKTS-RYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAE 113
           EALL   K +    LV+F A     C R  +I P  SIA +NK+V+F  VD+    NAA+
Sbjct: 13  EALLNRIKEAPGLVLVDFFATWCGPCQRLGQILP--SIAEANKDVTFIKVDVDKNGNAAD 70

Query: 114 KFGIS 118
            +G+S
Sbjct: 71  AYGVS 75


>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
          Length = 104

 Score = 37.0 bits (84), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 11/93 (11%)

Query: 50  TPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPEL-SIAYSNKNVSFGIVDLGLF 108
           T   LE L+ E K  R  +V+F AQ    C     I P++ ++A     V F  VD+   
Sbjct: 6   TAADLEKLINENK-GRLIVVDFFAQWCGPC---RNIAPKVEALAKEIPEVEFAKVDVDQN 61

Query: 109 PNAAEKFGISLGGSMGQLPTYILFENNAEINRF 141
             AA K+ ++       +PT++  ++  E++RF
Sbjct: 62  EEAAAKYSVTA------MPTFVFIKDGKEVDRF 88


>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
          Length = 153

 Score = 34.3 bits (77), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 14/101 (13%)

Query: 62  KTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGG 121
           K     +V F A  +  C + + +  EL  A     VSF  ++    P  +EK+ IS   
Sbjct: 30  KAKSLLVVHFWAPWAPQCAQMNEVMAEL--AKELPQVSFVKLEAEGVPEVSEKYEIS--- 84

Query: 122 SMGQLPTYILFENNAEINRFPAFGFEEKFSHPHITKKLIAH 162
               +PT++ F+N+ +I+R       +    P +TKK+  H
Sbjct: 85  ---SVPTFLFFKNSQKIDRL------DGAHAPELTKKVQRH 116


>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
           Thioredoxin-Like Protein 2
          Length = 130

 Score = 34.3 bits (77), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 14/95 (14%)

Query: 68  LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLP 127
           +V F A  +  C + + +  EL  A     VSF  ++    P  +EK+ IS       +P
Sbjct: 42  VVHFWAPWAPQCAQMNEVMAEL--AKELPQVSFVKLEAEGVPEVSEKYEIS------SVP 93

Query: 128 TYILFENNAEINRFPAFGFEEKFSHPHITKKLIAH 162
           T++ F+N+ +I+R       +    P +TKK+  H
Sbjct: 94  TFLFFKNSQKIDRL------DGAHAPELTKKVQRH 122


>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
          Length = 107

 Score = 30.8 bits (68), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 7/85 (8%)

Query: 68  LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLP 127
           LV+F A    TC   + +  EL+  Y  K      +D+   P+ A K+ +        +P
Sbjct: 24  LVDFWATWCGTCKMIAPVLEELAADYEGK-ADILKLDVDENPSTAAKYEVM------SIP 76

Query: 128 TYILFENNAEINRFPAFGFEEKFSH 152
           T I+F++   +++   F  +E  + 
Sbjct: 77  TLIVFKDGQPVDKVVGFQPKENLAE 101


>pdb|1G65|N Chain N, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
           Molecular Basis For Selectivity Of
           Alpha,Beta-Epoxyketone Proteasome Inhibitors
 pdb|1G65|2 Chain 2, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
           Molecular Basis For Selectivity Of
           Alpha,Beta-Epoxyketone Proteasome Inhibitors
 pdb|1G0U|N Chain N, A Gated Channel Into The Proteasome Core Particle
 pdb|1G0U|2 Chain 2, A Gated Channel Into The Proteasome Core Particle
 pdb|1FNT|H Chain H, Crystal Structure Of The 20s Proteasome From Yeast In
           Complex With The Proteasome Activator Pa26 From
           Trypanosome Brucei At 3.2 Angstroms Resolution
 pdb|1FNT|V Chain V, Crystal Structure Of The 20s Proteasome From Yeast In
           Complex With The Proteasome Activator Pa26 From
           Trypanosome Brucei At 3.2 Angstroms Resolution
 pdb|1JD2|N Chain N, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
           Complex: A Non- Covalent Proteasome Inhibitor
 pdb|1JD2|U Chain U, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
           Complex: A Non- Covalent Proteasome Inhibitor
 pdb|1Z7Q|H Chain H, Crystal Structure Of The 20s Proteasome From Yeast In
           Complex With The Proteasome Activator Pa26 From
           Trypanosome Brucei At 3.2 Angstroms Resolution
 pdb|1Z7Q|V Chain V, Crystal Structure Of The 20s Proteasome From Yeast In
           Complex With The Proteasome Activator Pa26 From
           Trypanosome Brucei At 3.2 Angstroms Resolution
 pdb|2F16|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
           With Bortezomib
 pdb|2F16|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
           With Bortezomib
 pdb|2FAK|N Chain N, Crystal Structure Of Salinosporamide A In Complex With The
           Yeast 20s Proteasome
 pdb|2FAK|2 Chain 2, Crystal Structure Of Salinosporamide A In Complex With The
           Yeast 20s Proteasome
 pdb|2GPL|N Chain N, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
           Proteasome Inhibitors
 pdb|2GPL|2 Chain 2, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
           Proteasome Inhibitors
 pdb|2ZCY|N Chain N, Yeast 20s Proteasome:syringolin A-Complex
 pdb|2ZCY|1 Chain 1, Yeast 20s Proteasome:syringolin A-Complex
 pdb|3BDM|N Chain N, Yeast 20s Proteasome:glidobactin A-Complex
 pdb|3BDM|1 Chain 1, Yeast 20s Proteasome:glidobactin A-Complex
 pdb|3D29|N Chain N, Proteasome Inhibition By Fellutamide B
 pdb|3D29|2 Chain 2, Proteasome Inhibition By Fellutamide B
 pdb|3E47|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
           With Homobelactosin C
 pdb|3E47|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
           With Homobelactosin C
 pdb|3DY3|N Chain N, Crystal Structure Of Yeast 20s Proteasome In Complex With
           The Epimer Form Of Spirolactacystin
 pdb|3DY3|2 Chain 2, Crystal Structure Of Yeast 20s Proteasome In Complex With
           The Epimer Form Of Spirolactacystin
 pdb|3DY4|N Chain N, Crystal Structure Of Yeast 20s Proteasome In Complex With
           Spirolactacystin
 pdb|3DY4|2 Chain 2, Crystal Structure Of Yeast 20s Proteasome In Complex With
           Spirolactacystin
 pdb|3GPJ|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
           With Syringolin B
 pdb|3GPJ|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
           With Syringolin B
 pdb|3GPT|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
           With Salinosporamide Derivatives: Slow Substrate Ligand
 pdb|3GPT|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
           With Salinosporamide Derivatives: Slow Substrate Ligand
 pdb|3GPW|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
           With Salinosporamide Derivatives: Irreversible Inhibitor
           Ligand
 pdb|3GPW|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
           With Salinosporamide Derivatives: Irreversible Inhibitor
           Ligand
 pdb|3HYE|N Chain N, Crystal Structure Of 20s Proteasome In Complex With
           Hydroxylated Salinosporamide
 pdb|3HYE|2 Chain 2, Crystal Structure Of 20s Proteasome In Complex With
           Hydroxylated Salinosporamide
 pdb|3MG4|N Chain N, Structure Of Yeast 20s Proteasome With Compound 1
 pdb|3MG4|2 Chain 2, Structure Of Yeast 20s Proteasome With Compound 1
 pdb|3MG0|N Chain N, Structure Of Yeast 20s Proteasome With Bortezomib
 pdb|3MG0|2 Chain 2, Structure Of Yeast 20s Proteasome With Bortezomib
 pdb|3MG6|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
           6
 pdb|3MG6|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
           6
 pdb|3MG7|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
           8
 pdb|3MG7|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
           8
 pdb|3MG8|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
           16
 pdb|3MG8|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
           16
 pdb|3OKJ|N Chain N, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
           Structure Motif For Proteasome Inhibition
 pdb|3OKJ|2 Chain 2, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
           Structure Motif For Proteasome Inhibition
 pdb|3OEU|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
           24
 pdb|3OEU|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
           24
 pdb|3OEV|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
           25
 pdb|3OEV|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
           25
 pdb|3TDD|N Chain N, Crystal Structure Of Yeast Cp In Complex With Belactosin C
 pdb|3TDD|2 Chain 2, Crystal Structure Of Yeast Cp In Complex With Belactosin C
 pdb|3SHJ|N Chain N, Proteasome In Complex With Hydroxyurea Derivative Hu10
 pdb|3SHJ|2 Chain 2, Proteasome In Complex With Hydroxyurea Derivative Hu10
 pdb|3UN4|N Chain N, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
 pdb|3UN4|BB Chain b, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
 pdb|3UN8|N Chain N, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
 pdb|3UN8|BB Chain b, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
 pdb|3SDI|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
           20
 pdb|3SDI|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
           20
 pdb|3SDK|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
           34
 pdb|3SDK|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
           34
 pdb|4GK7|N Chain N, Yeast 20s Proteasome In Complex With The
           Syringolin-Glidobactin Chimera
 pdb|4GK7|BB Chain b, Yeast 20s Proteasome In Complex With The
           Syringolin-Glidobactin Chimera
 pdb|4G4S|H Chain H, Structure Of Proteasome-Pba1-Pba2 Complex
 pdb|4FZC|N Chain N, 20s Yeast Proteasome In Complex With Cepafungin I
 pdb|4FZC|BB Chain b, 20s Yeast Proteasome In Complex With Cepafungin I
 pdb|4FZG|N Chain N, 20s Yeast Proteasome In Complex With Glidobactin
 pdb|4FZG|BB Chain b, 20s Yeast Proteasome In Complex With Glidobactin
 pdb|4INR|N Chain N, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
           Lu102
 pdb|4INR|BB Chain b, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
           Lu102
 pdb|4INT|N Chain N, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
           Lu122
 pdb|4INT|BB Chain b, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
           Lu122
 pdb|4INU|N Chain N, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
           Lu112
 pdb|4INU|BB Chain b, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
           Lu112
          Length = 196

 Score = 30.8 bits (68), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 82  ASRIFPELSIAYSNK-NVSFGIVDLGLFP-NAAEKFGISLGGSMGQLPTYILFENNAEIN 139
           A+ +F EL   Y NK N++ GI+  G    N  E + I LGGS+ +LP  I    +  I 
Sbjct: 78  AASVFKEL--CYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIY 135

Query: 140 RFPAFGFEEKFSHPHITKKLIAH 162
            +    F E  S    T   I H
Sbjct: 136 GYCDKNFRENMSKEE-TVDFIKH 157


>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
           Complex With Pepstatin A
 pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
           Complex With Pepstatin A
 pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
           Complex With Pepstatin A
 pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
           Complex With Pepstatin A
 pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
           Complex With Pepstatin A
 pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
           Complex With Pepstatin A
 pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
           Complex With Pepstatin A
 pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
           Complex With Pepstatin A
 pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
           Parapsilosis In Complex With The Hiv Protease Inhibitor
           Ritonavir
 pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
           Parapsilosis In Complex With The Hiv Protease Inhibitor
           Ritonavir
          Length = 339

 Score = 30.8 bits (68), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 46  SNKLTPLQLEALLTEGKTSRYWLVEFRAQCSS--TCIRASRIFPELSIAYSNKNVSFGI 102
           SNK    Q + ++ +  +S +W+V+  AQC     C  +    P  S +Y N   +F I
Sbjct: 22  SNK----QQQTVIIDTGSSDFWVVDSNAQCGKGVDCKSSGTFTPSSSSSYKNLGAAFTI 76


>pdb|3NZJ|N Chain N, Crystal Structure Of Yeast 20s Proteasome In Complex With
           Ligand 2a
 pdb|3NZJ|2 Chain 2, Crystal Structure Of Yeast 20s Proteasome In Complex With
           Ligand 2a
 pdb|3NZW|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
           With 2b
 pdb|3NZW|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
           With 2b
 pdb|3NZX|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
           With Ligand 2c
 pdb|3NZX|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
           With Ligand 2c
 pdb|4B4T|1 Chain 1, Near-Atomic Resolution Structural Model Of The Yeast 26s
           Proteasome
          Length = 215

 Score = 30.8 bits (68), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 82  ASRIFPELSIAYSNK-NVSFGIVDLGLFP-NAAEKFGISLGGSMGQLPTYILFENNAEIN 139
           A+ +F EL   Y NK N++ GI+  G    N  E + I LGGS+ +LP  I    +  I 
Sbjct: 97  AASVFKEL--CYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIY 154

Query: 140 RFPAFGFEEKFSHPHITKKLIAH 162
            +    F E  S    T   I H
Sbjct: 155 GYCDKNFRENMSKEE-TVDFIKH 176


>pdb|1VSY|H Chain H, Proteasome Activator Complex
 pdb|1VSY|V Chain V, Proteasome Activator Complex
 pdb|3L5Q|B Chain B, Proteasome Activator Complex
 pdb|3L5Q|D Chain D, Proteasome Activator Complex
          Length = 196

 Score = 30.8 bits (68), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 82  ASRIFPELSIAYSNK-NVSFGIVDLGLFP-NAAEKFGISLGGSMGQLPTYILFENNAEIN 139
           A+ +F EL   Y NK N++ GI+  G    N  E + I LGGS+ +LP  I    +  I 
Sbjct: 78  AASVFKEL--CYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIY 135

Query: 140 RFPAFGFEEKFSHPHITKKLIAH 162
            +    F E  S    T   I H
Sbjct: 136 GYCDKNFRENMSKEE-TVDFIKH 157


>pdb|1RYP|H Chain H, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
           Angstroms Resolution
 pdb|1RYP|V Chain V, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
           Angstroms Resolution
          Length = 205

 Score = 30.8 bits (68), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 82  ASRIFPELSIAYSNK-NVSFGIVDLGLFP-NAAEKFGISLGGSMGQLPTYILFENNAEIN 139
           A+ +F EL   Y NK N++ GI+  G    N  E + I LGGS+ +LP  I    +  I 
Sbjct: 87  AASVFKEL--CYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIY 144

Query: 140 RFPAFGFEEKFSHPHITKKLIAH 162
            +    F E  S    T   I H
Sbjct: 145 GYCDKNFRENMSKEE-TVDFIKH 166


>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
           Sympodialis Thioredoxin (Mala S 13), A Member Of A New
           Pan- Allergen Family
 pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
           Sympodialis Thioredoxin (Mala S 13), A Member Of A New
           Pan- Allergen Family
          Length = 121

 Score = 30.0 bits (66), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 68  LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLP 127
           +++F A     C     +F ++S   +   V F  VD+      A++ GI        +P
Sbjct: 37  VIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRA------MP 90

Query: 128 TYILFENNAEIN 139
           T++ F+N  +I+
Sbjct: 91  TFVFFKNGQKID 102


>pdb|1GH2|A Chain A, Crystal Structure Of The Catalytic Domain Of A New Human
           Thioredoxin-Like Protein
          Length = 107

 Score = 28.9 bits (63), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 11/95 (11%)

Query: 61  GKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLG 120
           G  SR  +V+F  +    C+R +  F  +S  Y      F  VD+      A    IS  
Sbjct: 18  GAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP--QAVFLEVDVHQCQGTAATNNISA- 74

Query: 121 GSMGQLPTYILFENNAEINRF---PAFGFEEKFSH 152
                 PT+  F N   I+++    A G EEK   
Sbjct: 75  -----TPTFQFFRNKVRIDQYQGADAVGLEEKIKQ 104


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.141    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,976,105
Number of Sequences: 62578
Number of extensions: 183057
Number of successful extensions: 439
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 431
Number of HSP's gapped (non-prelim): 19
length of query: 177
length of database: 14,973,337
effective HSP length: 92
effective length of query: 85
effective length of database: 9,216,161
effective search space: 783373685
effective search space used: 783373685
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (23.1 bits)