Query 030433
Match_columns 177
No_of_seqs 129 out of 1263
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 13:39:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030433.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030433hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0914 Thioredoxin-like prote 100.0 1.8E-38 3.9E-43 241.1 14.1 172 1-173 81-253 (265)
2 cd02962 TMX2 TMX2 family; comp 100.0 8.5E-31 1.8E-35 193.9 15.2 151 17-168 1-152 (152)
3 cd02954 DIM1 Dim1 family; Dim1 99.9 4.4E-24 9.6E-29 150.3 13.3 106 51-164 2-107 (114)
4 KOG0910 Thioredoxin-like prote 99.9 7.6E-24 1.7E-28 153.9 8.6 100 45-153 44-143 (150)
5 cd03006 PDI_a_EFP1_N PDIa fami 99.9 2.6E-22 5.7E-27 141.8 11.1 109 38-153 3-112 (113)
6 PHA02278 thioredoxin-like prot 99.9 3.7E-22 8.1E-27 138.8 10.4 93 51-153 4-100 (103)
7 cd02985 TRX_CDSP32 TRX family, 99.9 1.6E-21 3.4E-26 135.6 11.1 88 50-146 2-92 (103)
8 cd03065 PDI_b_Calsequestrin_N 99.9 1.4E-21 3E-26 139.3 9.2 106 38-153 3-114 (120)
9 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 1.7E-21 3.7E-26 134.5 9.3 98 45-152 2-99 (101)
10 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 5.3E-21 1.1E-25 132.6 10.1 100 45-153 2-103 (104)
11 cd02963 TRX_DnaJ TRX domain, D 99.9 4.7E-21 1E-25 134.9 9.8 100 48-153 8-107 (111)
12 cd02956 ybbN ybbN protein fami 99.9 5.2E-21 1.1E-25 130.7 9.6 92 53-152 2-93 (96)
13 cd02957 Phd_like Phosducin (Ph 99.8 2.4E-20 5.3E-25 131.6 12.0 105 44-160 4-108 (113)
14 PF00085 Thioredoxin: Thioredo 99.8 1.3E-20 2.8E-25 129.4 10.2 99 46-153 1-99 (103)
15 COG3118 Thioredoxin domain-con 99.8 3.5E-21 7.6E-26 153.6 8.2 102 45-153 24-125 (304)
16 PTZ00443 Thioredoxin domain-co 99.8 3.3E-20 7.2E-25 145.3 12.4 104 43-153 29-134 (224)
17 cd02948 TRX_NDPK TRX domain, T 99.8 2.8E-20 6.2E-25 129.0 10.7 87 49-145 5-91 (102)
18 PRK09381 trxA thioredoxin; Pro 99.8 4.2E-20 9.1E-25 129.1 10.9 100 44-152 3-102 (109)
19 cd02999 PDI_a_ERp44_like PDIa 99.8 2.1E-20 4.5E-25 129.4 9.1 91 53-153 8-99 (100)
20 KOG0907 Thioredoxin [Posttrans 99.8 4.1E-20 9E-25 129.0 10.6 77 63-147 20-96 (106)
21 cd03005 PDI_a_ERp46 PDIa famil 99.8 4E-20 8.7E-25 127.2 10.4 98 46-153 2-101 (102)
22 cd02996 PDI_a_ERp44 PDIa famil 99.8 3.8E-20 8.2E-25 129.3 9.9 100 45-153 2-107 (108)
23 cd02989 Phd_like_TxnDC9 Phosdu 99.8 1.6E-19 3.6E-24 127.6 12.7 96 44-150 4-100 (113)
24 PLN00410 U5 snRNP protein, DIM 99.8 6.7E-20 1.4E-24 133.7 10.5 89 50-146 10-100 (142)
25 cd02986 DLP Dim1 family, Dim1- 99.8 1.9E-19 4E-24 126.2 12.2 103 51-161 2-104 (114)
26 cd02965 HyaE HyaE family; HyaE 99.8 5.6E-20 1.2E-24 128.8 9.5 96 45-150 11-108 (111)
27 cd02994 PDI_a_TMX PDIa family, 99.8 1.1E-19 2.3E-24 125.3 9.8 96 45-152 2-97 (101)
28 PRK10996 thioredoxin 2; Provis 99.8 2.9E-19 6.3E-24 130.6 11.0 99 45-153 36-134 (139)
29 cd02984 TRX_PICOT TRX domain, 99.8 5.2E-19 1.1E-23 120.8 11.0 89 50-146 1-89 (97)
30 cd02987 Phd_like_Phd Phosducin 99.8 1.1E-18 2.3E-23 132.3 12.7 106 43-160 61-167 (175)
31 cd03002 PDI_a_MPD1_like PDI fa 99.8 3.5E-19 7.5E-24 124.1 9.2 99 46-153 2-107 (109)
32 cd02997 PDI_a_PDIR PDIa family 99.8 7.2E-19 1.6E-23 121.2 10.4 99 46-153 2-103 (104)
33 cd02993 PDI_a_APS_reductase PD 99.8 9.3E-19 2E-23 122.7 10.1 102 45-152 2-107 (109)
34 cd03001 PDI_a_P5 PDIa family, 99.8 1.2E-18 2.5E-23 120.1 9.9 99 46-153 2-101 (103)
35 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 1.4E-18 3E-23 119.7 9.9 99 46-153 2-103 (104)
36 cd02998 PDI_a_ERp38 PDIa famil 99.8 3.5E-18 7.7E-23 117.7 9.5 100 46-153 2-104 (105)
37 TIGR01068 thioredoxin thioredo 99.8 5.5E-18 1.2E-22 115.7 10.0 96 49-153 1-96 (101)
38 PTZ00051 thioredoxin; Provisio 99.8 7.5E-18 1.6E-22 115.3 10.2 84 51-145 8-91 (98)
39 cd02949 TRX_NTR TRX domain, no 99.8 8.4E-18 1.8E-22 115.3 9.7 91 54-153 5-95 (97)
40 TIGR01295 PedC_BrcD bacterioci 99.8 1E-17 2.2E-22 119.9 10.4 92 45-144 7-109 (122)
41 TIGR01126 pdi_dom protein disu 99.7 7.5E-18 1.6E-22 115.5 8.5 95 49-152 1-96 (102)
42 cd02953 DsbDgamma DsbD gamma f 99.7 3.7E-18 8E-23 118.4 6.9 91 52-152 2-101 (104)
43 cd02950 TxlA TRX-like protein 99.7 9.8E-18 2.1E-22 123.0 8.8 90 52-151 11-103 (142)
44 cd02961 PDI_a_family Protein D 99.7 1.7E-17 3.7E-22 112.6 9.3 97 48-153 2-100 (101)
45 cd03000 PDI_a_TMX3 PDIa family 99.7 1.1E-17 2.3E-22 116.2 7.8 90 52-152 7-98 (104)
46 cd02988 Phd_like_VIAF Phosduci 99.7 5.2E-17 1.1E-21 124.7 12.3 94 43-147 81-174 (192)
47 PTZ00102 disulphide isomerase; 99.7 7.7E-17 1.7E-21 138.6 13.3 101 43-153 31-133 (477)
48 KOG0908 Thioredoxin-like prote 99.7 3.4E-17 7.3E-22 127.5 8.7 90 50-148 8-97 (288)
49 cd02975 PfPDO_like_N Pyrococcu 99.7 3.9E-17 8.4E-22 115.4 7.9 82 64-153 22-105 (113)
50 cd02992 PDI_a_QSOX PDIa family 99.7 2.2E-16 4.9E-21 111.6 10.8 91 45-144 2-96 (114)
51 KOG0190 Protein disulfide isom 99.7 7.4E-17 1.6E-21 137.6 7.1 106 42-156 23-130 (493)
52 cd02947 TRX_family TRX family; 99.7 6.9E-16 1.5E-20 102.7 9.5 89 53-152 2-90 (93)
53 cd02951 SoxW SoxW family; SoxW 99.7 5.2E-16 1.1E-20 111.0 8.6 91 52-151 4-112 (125)
54 TIGR00424 APS_reduc 5'-adenyly 99.7 7.2E-16 1.6E-20 131.8 10.6 89 42-136 349-439 (463)
55 TIGR01130 ER_PDI_fam protein d 99.6 1E-15 2.2E-20 130.7 10.2 101 45-154 2-105 (462)
56 cd02952 TRP14_like Human TRX-r 99.6 2.6E-15 5.7E-20 106.8 10.1 81 50-137 8-102 (119)
57 PLN02309 5'-adenylylsulfate re 99.6 1.5E-15 3.3E-20 129.7 10.1 89 42-136 343-433 (457)
58 cd02959 ERp19 Endoplasmic reti 99.6 4.6E-15 1E-19 105.4 10.6 90 64-160 19-112 (117)
59 PTZ00062 glutaredoxin; Provisi 99.6 5.2E-15 1.1E-19 114.4 10.4 81 49-147 4-84 (204)
60 PTZ00102 disulphide isomerase; 99.6 4.1E-15 8.8E-20 128.0 9.9 103 43-153 356-460 (477)
61 PRK14018 trifunctional thiored 99.6 4.1E-15 8.9E-20 128.7 8.9 85 63-153 55-168 (521)
62 KOG4277 Uncharacterized conser 99.6 5E-15 1.1E-19 118.6 6.0 83 62-151 41-125 (468)
63 TIGR02738 TrbB type-F conjugat 99.5 5.7E-14 1.2E-18 104.2 10.0 74 67-149 53-144 (153)
64 cd03008 TryX_like_RdCVF Trypar 99.5 5.4E-14 1.2E-18 103.5 9.3 73 62-140 23-128 (146)
65 TIGR00411 redox_disulf_1 small 99.5 2.9E-14 6.4E-19 94.2 7.0 73 67-150 2-74 (82)
66 TIGR02187 GlrX_arch Glutaredox 99.5 6.8E-14 1.5E-18 109.2 8.4 81 67-153 22-106 (215)
67 KOG0190 Protein disulfide isom 99.5 4.7E-14 1E-18 120.6 7.9 108 36-153 356-468 (493)
68 PHA02125 thioredoxin-like prot 99.5 1.8E-13 3.8E-18 89.7 8.3 63 68-146 2-64 (75)
69 cd03010 TlpA_like_DsbE TlpA-li 99.5 2.7E-13 5.8E-18 96.9 10.0 78 63-149 24-125 (127)
70 cd03007 PDI_a_ERp29_N PDIa fam 99.5 8.1E-14 1.8E-18 98.5 7.1 96 46-153 3-111 (116)
71 cd02964 TryX_like_family Trypa 99.5 2.2E-13 4.8E-18 98.3 8.9 74 63-142 16-117 (132)
72 cd03009 TryX_like_TryX_NRX Try 99.5 2.8E-13 6E-18 97.5 9.0 73 63-141 17-116 (131)
73 TIGR01130 ER_PDI_fam protein d 99.5 1.6E-13 3.4E-18 117.2 8.9 100 44-153 346-449 (462)
74 cd02955 SSP411 TRX domain, SSP 99.5 9.3E-13 2E-17 94.4 11.0 89 51-149 5-105 (124)
75 PRK03147 thiol-disulfide oxido 99.5 1.1E-12 2.3E-17 98.4 11.3 83 63-151 60-165 (173)
76 PRK00293 dipZ thiol:disulfide 99.5 6.1E-13 1.3E-17 117.3 11.4 98 46-151 454-563 (571)
77 PF13905 Thioredoxin_8: Thiore 99.5 6.9E-13 1.5E-17 90.1 9.3 66 65-136 2-94 (95)
78 TIGR00412 redox_disulf_2 small 99.4 3.4E-13 7.4E-18 88.6 6.7 62 69-144 3-64 (76)
79 TIGR00385 dsbE periplasmic pro 99.4 2E-12 4.3E-17 97.6 11.2 77 63-149 62-162 (173)
80 cd03012 TlpA_like_DipZ_like Tl 99.4 1.9E-12 4.1E-17 92.6 9.5 76 63-144 22-125 (126)
81 TIGR02740 TraF-like TraF-like 99.4 1.3E-12 2.9E-17 105.4 9.3 80 62-150 164-256 (271)
82 PRK15412 thiol:disulfide inter 99.4 1.2E-12 2.5E-17 100.0 8.4 78 63-150 67-168 (185)
83 cd02982 PDI_b'_family Protein 99.4 5.3E-13 1.1E-17 91.8 5.8 70 65-139 13-84 (103)
84 TIGR02187 GlrX_arch Glutaredox 99.4 1.6E-12 3.4E-17 101.5 8.8 76 67-153 136-211 (215)
85 KOG0912 Thiol-disulfide isomer 99.4 3.3E-13 7.1E-18 108.1 4.8 96 50-154 2-102 (375)
86 cd02966 TlpA_like_family TlpA- 99.4 4.6E-12 9.9E-17 87.3 9.9 74 64-143 19-116 (116)
87 PF13098 Thioredoxin_2: Thiore 99.4 3.2E-13 7E-18 94.4 4.0 83 62-151 3-109 (112)
88 PLN02919 haloacid dehalogenase 99.4 2E-12 4.4E-17 120.8 8.4 84 63-152 419-530 (1057)
89 cd02973 TRX_GRX_like Thioredox 99.3 7.1E-12 1.5E-16 79.9 7.9 60 68-137 3-62 (67)
90 cd03011 TlpA_like_ScsD_MtbDsbE 99.3 6.7E-12 1.5E-16 89.0 7.4 77 65-150 21-118 (123)
91 PTZ00056 glutathione peroxidas 99.3 5.2E-12 1.1E-16 97.6 6.0 112 63-174 38-198 (199)
92 cd02967 mauD Methylamine utili 99.3 2.7E-11 5.8E-16 84.8 8.9 70 64-140 21-111 (114)
93 cd02960 AGR Anterior Gradient 99.3 4.3E-11 9.3E-16 86.2 9.8 94 63-164 22-119 (130)
94 cd03026 AhpF_NTD_C TRX-GRX-lik 99.3 4.4E-11 9.5E-16 80.9 8.6 67 67-145 15-81 (89)
95 KOG1731 FAD-dependent sulfhydr 99.3 7.6E-12 1.7E-16 107.5 5.9 90 38-135 33-126 (606)
96 PF08534 Redoxin: Redoxin; In 99.2 7.8E-11 1.7E-15 86.0 9.9 85 62-146 26-136 (146)
97 TIGR01626 ytfJ_HI0045 conserve 99.2 4.1E-11 8.9E-16 91.3 8.6 79 62-150 57-172 (184)
98 COG4232 Thiol:disulfide interc 99.2 3.2E-11 6.9E-16 104.4 8.9 99 47-152 457-562 (569)
99 PRK13728 conjugal transfer pro 99.2 4.1E-11 9E-16 90.9 8.3 74 68-150 73-163 (181)
100 KOG0191 Thioredoxin/protein di 99.2 1.7E-11 3.6E-16 103.4 6.2 99 47-155 32-131 (383)
101 PRK11509 hydrogenase-1 operon 99.2 1.3E-10 2.9E-15 83.7 8.5 98 47-153 20-119 (132)
102 cd02958 UAS UAS family; UAS is 99.1 2.3E-10 5E-15 80.5 8.1 82 63-151 16-104 (114)
103 TIGR02661 MauD methylamine deh 99.1 1.3E-09 2.9E-14 83.4 12.7 69 63-140 73-162 (189)
104 cd00340 GSH_Peroxidase Glutath 99.1 1.7E-10 3.7E-15 85.2 7.3 87 63-150 21-148 (152)
105 PLN02399 phospholipid hydroper 99.1 2.3E-10 5E-15 90.5 7.6 86 63-148 98-224 (236)
106 PLN02412 probable glutathione 99.1 5.3E-10 1.1E-14 84.1 7.3 88 63-150 28-156 (167)
107 KOG0191 Thioredoxin/protein di 99.1 2.4E-10 5.2E-15 96.4 6.0 102 46-155 146-249 (383)
108 COG0526 TrxA Thiol-disulfide i 99.0 8.7E-10 1.9E-14 75.1 7.3 73 64-143 32-107 (127)
109 TIGR02540 gpx7 putative glutat 99.0 6.7E-10 1.5E-14 82.1 7.0 87 63-149 21-144 (153)
110 PF13899 Thioredoxin_7: Thiore 99.0 1.1E-09 2.3E-14 72.7 6.8 70 53-133 9-81 (82)
111 cd02969 PRX_like1 Peroxiredoxi 99.0 4.2E-09 9.2E-14 79.1 9.2 71 64-140 25-125 (171)
112 COG2143 Thioredoxin-related pr 99.0 1.6E-08 3.4E-13 74.2 11.3 91 54-151 32-142 (182)
113 cd03017 PRX_BCP Peroxiredoxin 99.0 5.8E-09 1.3E-13 75.3 9.1 86 64-149 23-134 (140)
114 PF02114 Phosducin: Phosducin; 98.9 7.4E-09 1.6E-13 83.2 10.3 95 44-147 125-220 (265)
115 KOG2501 Thioredoxin, nucleored 98.9 2.5E-09 5.5E-14 78.8 6.4 70 64-139 33-130 (157)
116 smart00594 UAS UAS domain. 98.9 7.1E-09 1.5E-13 74.0 8.6 81 64-151 27-118 (122)
117 PTZ00256 glutathione peroxidas 98.9 5.9E-09 1.3E-13 79.4 7.9 43 64-106 40-83 (183)
118 PF00578 AhpC-TSA: AhpC/TSA fa 98.9 1.4E-08 3E-13 71.7 8.9 77 63-139 24-123 (124)
119 cd01659 TRX_superfamily Thiore 98.8 1.8E-08 3.9E-13 61.2 7.2 60 68-135 1-63 (69)
120 cd03018 PRX_AhpE_like Peroxire 98.8 4.6E-08 1E-12 71.4 10.3 81 65-145 29-134 (149)
121 cd02970 PRX_like2 Peroxiredoxi 98.8 4.3E-08 9.4E-13 71.2 9.7 41 67-107 27-67 (149)
122 TIGR02200 GlrX_actino Glutared 98.8 1E-08 2.2E-13 66.5 5.0 58 68-139 2-64 (77)
123 cd03015 PRX_Typ2cys Peroxiredo 98.8 7.6E-08 1.6E-12 72.5 9.8 83 64-146 29-141 (173)
124 PF14595 Thioredoxin_9: Thiore 98.8 4.2E-08 9.2E-13 70.8 7.6 83 57-145 35-118 (129)
125 cd02971 PRX_family Peroxiredox 98.7 9.5E-08 2.1E-12 68.8 9.4 83 64-146 22-131 (140)
126 PRK09437 bcp thioredoxin-depen 98.7 7.7E-08 1.7E-12 70.9 8.9 85 64-148 30-143 (154)
127 cd03014 PRX_Atyp2cys Peroxired 98.7 1.3E-07 2.7E-12 68.8 9.8 81 64-146 26-131 (143)
128 KOG0913 Thiol-disulfide isomer 98.7 2.8E-09 6.1E-14 82.8 0.8 100 44-155 24-123 (248)
129 KOG3425 Uncharacterized conser 98.7 3E-08 6.6E-13 69.5 5.8 81 52-134 13-104 (128)
130 TIGR03137 AhpC peroxiredoxin. 98.7 1.2E-07 2.7E-12 72.4 9.8 82 64-145 31-139 (187)
131 PRK00522 tpx lipid hydroperoxi 98.7 1.8E-07 3.8E-12 70.3 10.0 74 63-144 43-150 (167)
132 TIGR02196 GlrX_YruB Glutaredox 98.7 6.3E-08 1.4E-12 61.7 6.1 55 68-137 2-60 (74)
133 KOG1672 ATP binding protein [P 98.7 9.6E-08 2.1E-12 72.4 7.2 97 43-150 65-162 (211)
134 cd02968 SCO SCO (an acronym fo 98.5 2.8E-07 6.1E-12 66.6 6.8 44 64-107 22-69 (142)
135 PRK10382 alkyl hydroperoxide r 98.5 9.6E-07 2.1E-11 67.6 9.6 80 63-144 30-138 (187)
136 PF03190 Thioredox_DsbH: Prote 98.5 9.9E-07 2.1E-11 65.8 9.2 94 44-147 20-125 (163)
137 PF06110 DUF953: Eukaryotic pr 98.5 1.8E-06 4E-11 61.3 9.7 77 52-135 6-99 (119)
138 KOG3414 Component of the U4/U6 98.5 3.5E-06 7.7E-11 59.7 10.9 104 51-162 11-114 (142)
139 TIGR02180 GRX_euk Glutaredoxin 98.5 6.1E-07 1.3E-11 59.0 6.9 61 68-139 1-66 (84)
140 PRK15000 peroxidase; Provision 98.5 1.8E-06 3.9E-11 66.8 9.9 86 63-148 33-148 (200)
141 PF13728 TraF: F plasmid trans 98.5 1.5E-06 3.3E-11 67.9 9.3 64 63-135 119-193 (215)
142 PRK13190 putative peroxiredoxi 98.4 2.8E-06 6.2E-11 65.7 9.2 78 65-142 28-134 (202)
143 PF11009 DUF2847: Protein of u 98.3 1.2E-05 2.5E-10 55.8 10.1 86 50-142 6-95 (105)
144 KOG0911 Glutaredoxin-related p 98.3 1.7E-07 3.6E-12 72.7 0.9 81 64-152 17-97 (227)
145 PF02966 DIM1: Mitosis protein 98.3 5.9E-05 1.3E-09 54.0 13.5 102 51-161 8-110 (133)
146 PF01216 Calsequestrin: Calseq 98.3 4.4E-06 9.5E-11 68.7 8.3 109 37-156 27-142 (383)
147 cd03016 PRX_1cys Peroxiredoxin 98.3 7.6E-06 1.6E-10 63.3 9.0 81 67-147 29-139 (203)
148 PF13192 Thioredoxin_3: Thiore 98.2 2.5E-06 5.5E-11 55.7 5.4 64 71-148 5-69 (76)
149 PRK10606 btuE putative glutath 98.2 2.2E-06 4.8E-11 65.4 5.7 44 62-106 23-66 (183)
150 PRK13599 putative peroxiredoxi 98.2 8E-06 1.7E-10 63.9 8.9 76 67-142 32-136 (215)
151 PRK11200 grxA glutaredoxin 1; 98.2 1.2E-05 2.5E-10 53.5 7.6 63 67-139 2-70 (85)
152 cd02976 NrdH NrdH-redoxin (Nrd 98.2 1.4E-05 3E-10 50.6 7.7 51 68-131 2-56 (73)
153 PTZ00137 2-Cys peroxiredoxin; 98.2 1.8E-05 3.9E-10 63.6 9.7 79 64-143 98-206 (261)
154 PRK13191 putative peroxiredoxi 98.1 2.4E-05 5.1E-10 61.2 9.2 82 67-148 37-147 (215)
155 PF00462 Glutaredoxin: Glutare 98.1 3.5E-05 7.7E-10 47.7 8.1 55 68-137 1-59 (60)
156 TIGR02739 TraF type-F conjugat 98.1 2.2E-05 4.7E-10 62.9 8.5 61 65-134 151-222 (256)
157 PRK13189 peroxiredoxin; Provis 98.1 3.9E-05 8.4E-10 60.3 9.5 80 67-146 39-147 (222)
158 PTZ00253 tryparedoxin peroxida 98.1 4.1E-05 9E-10 59.0 9.4 83 64-146 36-148 (199)
159 KOG3171 Conserved phosducin-li 98.0 1.8E-05 3.9E-10 61.1 6.5 90 45-143 139-229 (273)
160 cd03419 GRX_GRXh_1_2_like Glut 97.9 5.3E-05 1.1E-09 49.5 7.0 59 68-139 2-65 (82)
161 PRK13703 conjugal pilus assemb 97.9 6.3E-05 1.4E-09 59.9 8.2 74 66-148 145-231 (248)
162 cd02066 GRX_family Glutaredoxi 97.8 0.00012 2.6E-09 45.9 7.2 57 68-139 2-62 (72)
163 PF07449 HyaE: Hydrogenase-1 e 97.8 5.9E-05 1.3E-09 52.5 5.7 91 45-146 10-103 (107)
164 cd02991 UAS_ETEA UAS family, E 97.8 0.00016 3.5E-09 51.1 7.7 81 62-152 15-107 (116)
165 TIGR02183 GRXA Glutaredoxin, G 97.8 0.00011 2.5E-09 49.0 6.5 61 68-138 2-68 (86)
166 TIGR03143 AhpF_homolog putativ 97.8 0.00013 2.8E-09 64.6 8.5 73 68-152 480-552 (555)
167 KOG2603 Oligosaccharyltransfer 97.8 0.00027 5.8E-09 57.5 9.4 87 43-135 39-136 (331)
168 TIGR02190 GlrX-dom Glutaredoxi 97.7 0.00026 5.6E-09 46.4 7.6 58 67-139 9-69 (79)
169 TIGR02194 GlrX_NrdH Glutaredox 97.6 0.00026 5.6E-09 45.5 6.3 50 69-131 2-54 (72)
170 TIGR02181 GRX_bact Glutaredoxi 97.6 0.0004 8.7E-09 45.2 6.7 56 69-139 2-61 (79)
171 PRK10329 glutaredoxin-like pro 97.6 0.00036 7.9E-09 46.1 6.4 54 68-131 3-56 (81)
172 PF05768 DUF836: Glutaredoxin- 97.5 0.00016 3.4E-09 47.7 4.4 77 68-162 2-78 (81)
173 cd03020 DsbA_DsbC_DsbG DsbA fa 97.5 0.00034 7.4E-09 53.7 6.7 74 63-151 76-194 (197)
174 PRK10877 protein disulfide iso 97.5 0.00018 4E-09 56.9 4.8 77 62-152 105-225 (232)
175 cd03027 GRX_DEP Glutaredoxin ( 97.5 0.0011 2.5E-08 42.4 7.7 57 68-139 3-63 (73)
176 PRK15317 alkyl hydroperoxide r 97.5 0.00085 1.8E-08 58.9 9.2 72 67-150 119-190 (517)
177 KOG3170 Conserved phosducin-li 97.4 0.0009 1.9E-08 51.4 7.9 92 44-146 91-182 (240)
178 PF13848 Thioredoxin_6: Thiore 97.4 0.0015 3.3E-08 48.7 8.7 82 45-133 78-159 (184)
179 TIGR02189 GlrX-like_plant Glut 97.4 0.0012 2.6E-08 45.3 7.4 58 67-139 9-73 (99)
180 TIGR00365 monothiol glutaredox 97.3 0.0041 9E-08 42.4 9.2 68 53-139 4-79 (97)
181 cd03029 GRX_hybridPRX5 Glutare 97.3 0.0027 5.8E-08 40.5 7.7 56 68-138 3-61 (72)
182 cd03418 GRX_GRXb_1_3_like Glut 97.3 0.0029 6.3E-08 40.4 7.9 58 68-139 2-63 (75)
183 PHA03050 glutaredoxin; Provisi 97.1 0.0034 7.4E-08 43.8 7.6 61 67-139 14-81 (108)
184 cd02972 DsbA_family DsbA famil 97.1 0.0029 6.3E-08 41.6 7.0 59 68-133 1-91 (98)
185 TIGR03140 AhpF alkyl hydropero 97.1 0.0037 8E-08 54.9 9.1 71 67-149 120-190 (515)
186 PRK10638 glutaredoxin 3; Provi 97.1 0.0046 9.9E-08 40.7 7.5 57 68-139 4-64 (83)
187 cd03028 GRX_PICOT_like Glutare 97.0 0.0066 1.4E-07 40.7 7.9 51 74-139 21-75 (90)
188 COG0695 GrxC Glutaredoxin and 97.0 0.0022 4.7E-08 42.3 5.1 54 68-136 3-62 (80)
189 COG1225 Bcp Peroxiredoxin [Pos 97.0 0.012 2.6E-07 43.8 9.5 85 62-146 28-141 (157)
190 TIGR03143 AhpF_homolog putativ 96.9 0.0092 2E-07 52.9 9.9 95 53-156 356-452 (555)
191 PRK11657 dsbG disulfide isomer 96.8 0.0052 1.1E-07 49.2 6.9 80 63-151 116-245 (251)
192 cd03072 PDI_b'_ERp44 PDIb' fam 96.5 0.013 2.9E-07 40.9 6.7 77 47-135 2-83 (111)
193 cd03023 DsbA_Com1_like DsbA fa 96.5 0.0079 1.7E-07 43.3 5.5 40 64-105 5-44 (154)
194 PRK10824 glutaredoxin-4; Provi 96.5 0.011 2.4E-07 41.7 6.0 73 52-139 6-82 (115)
195 cd02981 PDI_b_family Protein D 96.4 0.016 3.4E-07 38.8 6.6 85 52-153 8-93 (97)
196 cd02983 P5_C P5 family, C-term 96.4 0.038 8.3E-07 39.7 8.9 85 45-136 3-92 (130)
197 PRK12759 bifunctional gluaredo 96.2 0.022 4.7E-07 48.8 7.8 63 67-138 3-71 (410)
198 cd03073 PDI_b'_ERp72_ERp57 PDI 96.2 0.02 4.3E-07 40.1 6.0 57 76-134 30-86 (111)
199 COG1331 Highly conserved prote 96.0 0.034 7.4E-07 49.9 8.0 101 43-147 25-131 (667)
200 cd02978 KaiB_like KaiB-like fa 95.9 0.035 7.7E-07 35.8 5.7 60 67-132 3-62 (72)
201 KOG1752 Glutaredoxin and relat 95.9 0.093 2E-06 36.3 8.2 73 53-139 6-79 (104)
202 cd03013 PRX5_like Peroxiredoxi 95.9 0.015 3.2E-07 43.0 4.5 40 67-106 33-74 (155)
203 PF13462 Thioredoxin_4: Thiore 95.3 0.09 1.9E-06 38.2 6.8 43 63-105 11-54 (162)
204 PRK09301 circadian clock prote 95.1 0.092 2E-06 36.2 5.8 76 64-146 5-80 (103)
205 cd03019 DsbA_DsbA DsbA family, 94.9 0.049 1.1E-06 40.4 4.6 38 66-104 17-54 (178)
206 TIGR02654 circ_KaiB circadian 94.9 0.1 2.2E-06 34.9 5.6 75 66-147 4-78 (87)
207 PTZ00062 glutaredoxin; Provisi 94.8 0.17 3.6E-06 39.3 7.3 55 74-139 126-180 (204)
208 PF13743 Thioredoxin_5: Thiore 94.2 0.32 7E-06 36.7 7.6 33 70-103 2-34 (176)
209 cd02977 ArsC_family Arsenate R 94.2 0.096 2.1E-06 35.9 4.4 35 69-110 2-36 (105)
210 PRK10954 periplasmic protein d 93.7 0.1 2.2E-06 40.3 4.2 39 66-105 39-80 (207)
211 PHA03075 glutaredoxin-like pro 93.4 0.15 3.3E-06 35.8 4.1 34 67-105 4-37 (123)
212 cd03036 ArsC_like Arsenate Red 92.7 0.27 5.8E-06 34.2 4.6 36 69-111 2-37 (111)
213 PF07912 ERp29_N: ERp29, N-ter 92.6 0.5 1.1E-05 33.7 5.9 98 47-153 7-114 (126)
214 cd03035 ArsC_Yffb Arsenate Red 92.5 0.28 6.2E-06 33.8 4.6 35 69-110 2-36 (105)
215 PRK01655 spxA transcriptional 92.1 0.4 8.6E-06 34.5 5.1 35 68-109 2-36 (131)
216 PF07689 KaiB: KaiB domain; I 92.1 0.064 1.4E-06 35.5 0.8 56 71-132 3-58 (82)
217 PF06053 DUF929: Domain of unk 91.4 1 2.2E-05 36.1 7.1 33 63-95 57-89 (249)
218 TIGR01617 arsC_related transcr 91.4 0.5 1.1E-05 33.1 4.8 38 69-113 2-39 (117)
219 cd03060 GST_N_Omega_like GST_N 91.3 1.7 3.6E-05 27.1 6.9 57 69-137 2-59 (71)
220 cd03031 GRX_GRX_like Glutaredo 90.9 1.2 2.5E-05 32.8 6.5 32 75-113 15-46 (147)
221 cd03041 GST_N_2GST_N GST_N fam 90.3 2.4 5.2E-05 27.0 7.0 58 69-136 3-61 (77)
222 PRK12559 transcriptional regul 90.1 0.83 1.8E-05 32.8 5.1 35 68-109 2-36 (131)
223 cd03066 PDI_b_Calsequestrin_mi 90.1 2.1 4.5E-05 29.0 6.9 90 47-153 3-96 (102)
224 cd03032 ArsC_Spx Arsenate Redu 90.0 1.1 2.4E-05 31.2 5.6 34 69-109 3-36 (115)
225 PF00837 T4_deiodinase: Iodoth 89.8 0.4 8.6E-06 38.0 3.4 58 45-103 83-140 (237)
226 PF13848 Thioredoxin_6: Thiore 89.1 0.96 2.1E-05 33.4 5.0 61 82-153 8-70 (184)
227 cd03037 GST_N_GRX2 GST_N famil 88.4 2.3 5.1E-05 26.4 5.8 19 70-88 3-21 (71)
228 PRK13344 spxA transcriptional 88.0 1.5 3.3E-05 31.5 5.2 34 69-109 3-36 (132)
229 cd02974 AhpF_NTD_N Alkyl hydro 87.3 7 0.00015 26.4 8.2 81 52-153 8-89 (94)
230 cd03051 GST_N_GTT2_like GST_N 86.9 3.3 7.2E-05 25.5 5.9 52 69-131 2-57 (74)
231 COG4545 Glutaredoxin-related p 86.9 1.1 2.4E-05 29.1 3.5 21 69-89 5-25 (85)
232 KOG2507 Ubiquitin regulatory p 85.1 4.3 9.3E-05 35.0 7.0 80 67-152 21-105 (506)
233 cd03040 GST_N_mPGES2 GST_N fam 85.0 6.5 0.00014 24.7 6.6 20 69-88 3-22 (77)
234 PF02630 SCO1-SenC: SCO1/SenC; 85.0 2.7 5.9E-05 31.5 5.4 47 62-108 50-99 (174)
235 cd03059 GST_N_SspA GST_N famil 84.9 4 8.7E-05 25.2 5.5 52 69-130 2-53 (73)
236 KOG2640 Thioredoxin [Function 84.4 0.37 8.1E-06 39.6 0.5 62 64-133 76-138 (319)
237 cd00570 GST_N_family Glutathio 82.6 2 4.4E-05 25.6 3.3 55 70-137 3-59 (71)
238 PRK15317 alkyl hydroperoxide r 80.2 9.6 0.00021 33.5 7.8 84 52-156 8-92 (517)
239 cd03033 ArsC_15kD Arsenate Red 80.1 4.7 0.0001 28.2 4.7 35 68-109 2-36 (113)
240 cd03067 PDI_b_PDIR_N PDIb fami 79.6 11 0.00024 26.1 6.2 81 52-139 10-93 (112)
241 COG1999 Uncharacterized protei 78.6 23 0.00049 27.4 8.6 45 62-106 65-113 (207)
242 cd03045 GST_N_Delta_Epsilon GS 77.5 5.3 0.00012 24.7 4.1 51 69-130 2-56 (74)
243 TIGR03140 AhpF alkyl hydropero 76.7 15 0.00032 32.3 7.9 85 52-156 8-93 (515)
244 PF05988 DUF899: Bacterial pro 76.5 22 0.00049 27.7 7.9 82 62-144 66-174 (211)
245 COG0450 AhpC Peroxiredoxin [Po 74.9 5.4 0.00012 30.7 4.1 43 64-106 33-76 (194)
246 PF13417 GST_N_3: Glutathione 74.8 16 0.00034 22.9 5.8 56 71-139 2-58 (75)
247 cd03034 ArsC_ArsC Arsenate Red 74.2 7.9 0.00017 26.8 4.5 34 69-109 2-35 (112)
248 cd02990 UAS_FAF1 UAS family, F 72.7 34 0.00073 24.8 8.3 83 62-151 19-126 (136)
249 TIGR00014 arsC arsenate reduct 72.0 9.4 0.0002 26.5 4.5 35 69-110 2-36 (114)
250 cd03055 GST_N_Omega GST_N fami 71.6 13 0.00028 24.2 5.0 54 67-131 18-72 (89)
251 cd03052 GST_N_GDAP1 GST_N fami 71.0 16 0.00035 22.9 5.1 57 69-138 2-62 (73)
252 COG3019 Predicted metal-bindin 69.5 13 0.00028 27.2 4.7 62 67-139 27-88 (149)
253 PF01323 DSBA: DSBA-like thior 67.0 17 0.00037 26.9 5.3 40 67-106 1-40 (193)
254 PF00255 GSHPx: Glutathione pe 65.5 29 0.00062 24.1 5.8 45 62-107 19-63 (108)
255 COG1393 ArsC Arsenate reductas 65.2 16 0.00035 25.6 4.6 35 68-109 3-37 (117)
256 PF09673 TrbC_Ftype: Type-F co 63.8 24 0.00053 24.5 5.2 70 51-134 10-80 (113)
257 TIGR02742 TrbC_Ftype type-F co 62.4 7.7 0.00017 27.9 2.5 24 107-136 59-82 (130)
258 PF03960 ArsC: ArsC family; I 61.4 24 0.00051 24.1 4.8 32 71-109 1-32 (110)
259 COG1651 DsbG Protein-disulfide 61.2 24 0.00052 27.5 5.4 37 65-101 85-121 (244)
260 PRK10853 putative reductase; P 61.0 20 0.00043 25.2 4.4 35 68-109 2-36 (118)
261 cd03025 DsbA_FrnE_like DsbA fa 59.4 14 0.00031 27.4 3.7 27 68-94 3-29 (193)
262 PF04592 SelP_N: Selenoprotein 58.9 20 0.00044 28.4 4.5 47 58-105 21-70 (238)
263 PRK10026 arsenate reductase; P 56.1 31 0.00067 25.1 4.8 36 67-109 3-38 (141)
264 cd03069 PDI_b_ERp57 PDIb famil 56.0 60 0.0013 21.8 6.2 65 51-133 8-72 (104)
265 TIGR01616 nitro_assoc nitrogen 55.7 35 0.00075 24.3 5.0 34 68-108 3-36 (126)
266 PF01323 DSBA: DSBA-like thior 54.8 7.6 0.00017 28.8 1.5 33 107-149 155-187 (193)
267 cd03056 GST_N_4 GST_N family, 52.7 50 0.0011 19.9 6.4 55 70-137 3-61 (73)
268 PF13778 DUF4174: Domain of un 48.8 90 0.0019 21.7 7.5 79 67-150 12-104 (118)
269 cd03049 GST_N_3 GST_N family, 48.3 60 0.0013 19.8 4.8 57 70-136 3-60 (73)
270 cd03053 GST_N_Phi GST_N family 47.7 33 0.00071 21.2 3.5 56 69-137 3-62 (76)
271 PF06491 Disulph_isomer: Disul 47.1 1.1E+02 0.0023 22.2 10.3 94 47-144 20-114 (136)
272 cd03030 GRX_SH3BGR Glutaredoxi 45.5 78 0.0017 21.1 5.2 23 93-115 26-48 (92)
273 cd03025 DsbA_FrnE_like DsbA fa 45.4 21 0.00045 26.5 2.6 22 109-136 159-180 (193)
274 cd03019 DsbA_DsbA DsbA family, 41.8 15 0.00033 26.7 1.4 24 108-139 132-155 (178)
275 PRK10954 periplasmic protein d 41.3 16 0.00034 28.0 1.4 22 110-139 158-179 (207)
276 PF04134 DUF393: Protein of un 41.3 27 0.00058 23.7 2.5 59 71-136 2-61 (114)
277 PF11287 DUF3088: Protein of u 41.0 49 0.0011 23.2 3.7 52 75-134 23-77 (112)
278 cd03038 GST_N_etherase_LigE GS 40.6 46 0.00099 21.1 3.4 50 73-130 13-62 (84)
279 PRK09481 sspA stringent starva 39.9 1E+02 0.0022 23.3 5.8 61 67-139 10-70 (211)
280 cd03058 GST_N_Tau GST_N family 36.5 1E+02 0.0022 18.8 5.5 57 70-137 3-59 (74)
281 COG2761 FrnE Predicted dithiol 34.4 27 0.00058 27.6 1.7 33 110-152 175-207 (225)
282 cd03068 PDI_b_ERp72 PDIb famil 34.1 1.5E+02 0.0033 20.1 8.0 68 51-134 8-75 (107)
283 cd03054 GST_N_Metaxin GST_N fa 34.0 1.1E+02 0.0024 18.5 6.3 16 73-88 13-28 (72)
284 KOG4498 Uncharacterized conser 33.0 87 0.0019 24.2 4.2 54 48-104 36-91 (197)
285 COG3531 Predicted protein-disu 32.4 42 0.0009 26.1 2.4 24 110-139 165-188 (212)
286 cd03061 GST_N_CLIC GST_N famil 32.3 1.5E+02 0.0034 19.7 6.2 53 74-138 20-72 (91)
287 PF13153 DUF3985: Protein of u 32.1 99 0.0021 17.4 3.4 11 3-13 15-25 (44)
288 PF06764 DUF1223: Protein of u 31.4 1.4E+02 0.003 23.1 5.2 34 70-106 4-37 (202)
289 PF14851 FAM176: FAM176 family 31.1 63 0.0014 24.0 3.1 26 10-35 22-47 (153)
290 COG0386 BtuE Glutathione perox 31.1 1.3E+02 0.0027 22.6 4.6 56 47-106 11-66 (162)
291 KOG0855 Alkyl hydroperoxide re 30.9 52 0.0011 25.0 2.6 42 65-106 91-133 (211)
292 COG3011 Predicted thiol-disulf 29.2 2.1E+02 0.0046 20.8 5.5 66 66-139 8-74 (137)
293 KOG4277 Uncharacterized conser 27.9 2.5E+02 0.0055 23.5 6.3 103 46-167 136-239 (468)
294 KOG1651 Glutathione peroxidase 26.7 1.1E+02 0.0024 23.1 3.8 48 58-106 29-76 (171)
295 PF06480 FtsH_ext: FtsH Extrac 25.4 70 0.0015 20.9 2.4 19 44-63 25-43 (110)
296 PF07315 DUF1462: Protein of u 25.2 1.9E+02 0.0041 19.5 4.3 36 75-110 8-50 (93)
297 COG4312 Uncharacterized protei 24.0 1.9E+02 0.0042 22.9 4.8 35 72-106 87-121 (247)
298 TIGR02652 conserved hypothetic 23.3 29 0.00063 25.4 0.2 12 75-86 11-22 (163)
299 PF09654 DUF2396: Protein of u 23.2 28 0.00062 25.4 0.1 12 75-86 8-19 (161)
300 PF05814 DUF843: Baculovirus p 23.1 2.3E+02 0.0051 18.7 4.9 18 2-19 2-20 (83)
301 PF04908 SH3BGR: SH3-binding, 23.0 1.3E+02 0.0027 20.5 3.3 73 70-142 4-81 (99)
302 PRK11752 putative S-transferas 22.6 2.9E+02 0.0063 21.9 5.8 60 69-131 45-106 (264)
303 PF06298 PsbY: Photosystem II 22.3 1.2E+02 0.0026 16.8 2.4 19 16-34 1-19 (36)
304 PRK10387 glutaredoxin 2; Provi 22.2 1.7E+02 0.0037 21.8 4.3 19 71-89 4-22 (210)
305 PF06953 ArsD: Arsenical resis 21.8 1.1E+02 0.0024 21.7 2.9 55 90-153 33-97 (123)
306 COG3581 Uncharacterized protei 21.7 2.5E+02 0.0054 24.3 5.3 58 47-104 52-111 (420)
307 cd03050 GST_N_Theta GST_N fami 21.0 2.1E+02 0.0046 17.4 5.6 55 70-137 3-61 (76)
308 PF10589 NADH_4Fe-4S: NADH-ubi 20.9 47 0.001 19.1 0.7 20 75-94 18-37 (46)
309 KOG0854 Alkyl hydroperoxide re 20.7 1.4E+02 0.0031 22.9 3.3 42 67-108 34-77 (224)
310 PRK13730 conjugal transfer pil 20.1 79 0.0017 24.7 2.0 31 108-145 151-181 (212)
No 1
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-38 Score=241.13 Aligned_cols=172 Identities=34% Similarity=0.634 Sum_probs=165.9
Q ss_pred ChhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHhcCCcccCCcceeecCh-hHHHHHHhcCCCCceEEEEEecCCChhh
Q 030433 1 MLFYAKLLLVAIASIMDYHLALWFLVVFLVIYILTQQPVFQKLGISNKLTP-LQLEALLTEGKTSRYWLVEFRAQCSSTC 79 (177)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~~~~vlV~F~a~wC~~C 79 (177)
+|+|||++++++++++|+|.+++|+++|+++++.+.+|.|.+|++++.++. +.+++.+.. ++.+.|+|.|+|.|.+.|
T Consensus 81 sfLysKia~~~l~~~~D~r~gl~fillc~vv~ml~~eP~y~gpe~ikyf~~~q~~deel~r-nk~t~WlIeFfa~ws~~C 159 (265)
T KOG0914|consen 81 SFLYSKIANIILFLRADIRVGLWFILLCSVVYMLAPEPAYSGPETIKYFTNMQLEDEELDR-NKRTYWLIEFFACWSPKC 159 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCchheeeecchhhHHHHhcc-CCceEEEEEEEeecChhh
Confidence 489999999999999999999999999999999999999999999999955 666777877 888899999999999999
Q ss_pred HHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEEEEeCCEEeeeecCCCCCCcccccccchHh
Q 030433 80 IRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEINRFPAFGFEEKFSHPHITKKL 159 (177)
Q Consensus 80 ~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii~~~G~~~~r~~g~~~~~~~~~~~~~~~~ 159 (177)
++..|.+.+++.+|+.++++|++||++++++.+.+|+|+.+|.+++.||+++|++|+++.|++..+.++...+|.+|++|
T Consensus 160 v~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT~ilFq~gkE~~RrP~vd~~gra~s~~fSeen 239 (265)
T KOG0914|consen 160 VRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPTYILFQKGKEVSRRPDVDVKGRAVSFPFSEEN 239 (265)
T ss_pred cccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccccCCeEEEEccchhhhcCccccccCCcccccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccchhHhHhh
Q 030433 160 IAHHFQLDRLRIES 173 (177)
Q Consensus 160 ~~~~~~~~~~~~~~ 173 (177)
+.+.|+|+++|++.
T Consensus 240 v~~~F~Ln~Ly~e~ 253 (265)
T KOG0914|consen 240 VCQHFELNRLYLEA 253 (265)
T ss_pred HHHHhcHHHHHHHH
Confidence 99999999999987
No 2
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.97 E-value=8.5e-31 Score=193.91 Aligned_cols=151 Identities=37% Similarity=0.646 Sum_probs=135.0
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCcccCCcceeecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCC
Q 030433 17 DYHLALWFLVVFLVIYILTQQPVFQKLGISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNK 96 (177)
Q Consensus 17 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~ 96 (177)
|+|+.++|+++|+++++.+++|.+.++..+..+++++|++.+.. +++++++|+|||+||++|+.+.|.++++++++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~-~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~ 79 (152)
T cd02962 1 DIRLGLLYLLLCIVVYLLAPQPLYMGPEHIKYFTPKTLEEELER-DKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNN 79 (152)
T ss_pred CcEEehhHHHHHHHHHHHhCCCccCCCCccEEcCHHHHHHHHHh-cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC
Confidence 67899999999999999999999888889999999999988876 55567999999999999999999999999999766
Q ss_pred CcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEEEEeCCEEeeeecCC-CCCCcccccccchHhHhhhccchh
Q 030433 97 NVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEINRFPAF-GFEEKFSHPHITKKLIAHHFQLDR 168 (177)
Q Consensus 97 ~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii~~~G~~~~r~~g~-~~~~~~~~~~~~~~~~~~~~~~~~ 168 (177)
++.|++||++++++++++|+|..+...+++||+++|++|+++.|..|. ..++......+|.||+++.|+||+
T Consensus 80 ~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~r~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (152)
T cd02962 80 NLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVARRPYYNDSKGRAVPFTFSKENVIRHFDLDR 152 (152)
T ss_pred CeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEEEEEeccccCccccccccccHHHHHHhcccCC
Confidence 799999999999999999999833333449999999999999999994 446778889999999999999984
No 3
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.92 E-value=4.4e-24 Score=150.34 Aligned_cols=106 Identities=12% Similarity=0.233 Sum_probs=94.6
Q ss_pred hhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEE
Q 030433 51 PLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYI 130 (177)
Q Consensus 51 ~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptli 130 (177)
.++|++.+.. ..+++++|+|||+||+||+.+.|.+++++++++ +.+.|++||++++++++++|+|. ++||++
T Consensus 2 ~~~~~~~i~~-~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~-~~v~f~kVDvD~~~~la~~~~V~------~iPTf~ 73 (114)
T cd02954 2 GWAVDQAILS-EEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVS-NFAVIYLVDIDEVPDFNKMYELY------DPPTVM 73 (114)
T ss_pred HHHHHHHHhc-cCCCEEEEEEECCCChhHHHHHHHHHHHHHHcc-CceEEEEEECCCCHHHHHHcCCC------CCCEEE
Confidence 5788888876 455679999999999999999999999999997 45899999999999999999999 999999
Q ss_pred EEeCCEEeeeecCCCCCCcccccccchHhHhhhc
Q 030433 131 LFENNAEINRFPAFGFEEKFSHPHITKKLIAHHF 164 (177)
Q Consensus 131 i~~~G~~~~r~~g~~~~~~~~~~~~~~~~~~~~~ 164 (177)
+|++|+.+.+..|..++..+....-+++..+..+
T Consensus 74 ~fk~G~~v~~~~G~~~~~~~~~~~~~~~~~~~~~ 107 (114)
T cd02954 74 FFFRNKHMKIDLGTGNNNKINWVFEDKQEFIDII 107 (114)
T ss_pred EEECCEEEEEEcCCCCCceEEEecCcHHHHHHHH
Confidence 9999999999999999999888777777665443
No 4
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=7.6e-24 Score=153.93 Aligned_cols=100 Identities=24% Similarity=0.386 Sum_probs=91.2
Q ss_pred ceeecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCC
Q 030433 45 ISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMG 124 (177)
Q Consensus 45 ~~~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~ 124 (177)
.+...+.++|++.+.+++++ |+|+|||+||+||+.+.|.++++.++|. +.++++++|.+++++++.+|+|.
T Consensus 44 ~~~~~s~~~~~~~Vi~S~~P--VlVdF~A~WCgPCk~l~P~l~~~~~~~~-g~~k~~kvdtD~~~ela~~Y~I~------ 114 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINSDVP--VLVDFHAEWCGPCKMLGPILEELVSEYA-GKFKLYKVDTDEHPELAEDYEIS------ 114 (150)
T ss_pred cccccCHHHHHHHHHccCCC--EEEEEecCcCccHhHhhHHHHHHHHhhc-CeEEEEEEccccccchHhhccee------
Confidence 46677889998888775666 9999999999999999999999999997 78999999999999999999999
Q ss_pred CCCEEEEEeCCEEeeeecCCCCCCccccc
Q 030433 125 QLPTYILFENNAEINRFPAFGFEEKFSHP 153 (177)
Q Consensus 125 ~~Ptlii~~~G~~~~r~~g~~~~~~~~~~ 153 (177)
++||+++|+||+...++.|..+++.+.++
T Consensus 115 avPtvlvfknGe~~d~~vG~~~~~~l~~~ 143 (150)
T KOG0910|consen 115 AVPTVLVFKNGEKVDRFVGAVPKEQLRSL 143 (150)
T ss_pred eeeEEEEEECCEEeeeecccCCHHHHHHH
Confidence 99999999999999999999988766554
No 5
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.88 E-value=2.6e-22 Score=141.77 Aligned_cols=109 Identities=13% Similarity=0.048 Sum_probs=92.7
Q ss_pred CcccCCcceeecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHH-HHhC
Q 030433 38 PVFQKLGISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAA-EKFG 116 (177)
Q Consensus 38 ~~~~~~~~~~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~-~~~~ 116 (177)
|-|++...+.+++.++|+....-....++++|.|||+||++|+.+.|.+++++++++ +.+.|++||++++.+++ ++|+
T Consensus 3 ~~~~~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~-~~v~~~~Vd~d~~~~l~~~~~~ 81 (113)
T cd03006 3 PFFSQRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLS-DQVLFVAINCWWPQGKCRKQKH 81 (113)
T ss_pred CccCCCCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhc-CCeEEEEEECCCChHHHHHhcC
Confidence 456666788999999998764311334459999999999999999999999999997 45999999999999998 5899
Q ss_pred CCcCCCCCCCCEEEEEeCCEEeeeecCCCCCCccccc
Q 030433 117 ISLGGSMGQLPTYILFENNAEINRFPAFGFEEKFSHP 153 (177)
Q Consensus 117 v~~~~~~~~~Ptlii~~~G~~~~r~~g~~~~~~~~~~ 153 (177)
|+ ++||+++|++|+...++.|..+.+.+..|
T Consensus 82 I~------~~PTl~lf~~g~~~~~y~G~~~~~~i~~~ 112 (113)
T cd03006 82 FF------YFPVIHLYYRSRGPIEYKGPMRAPYMEKF 112 (113)
T ss_pred Cc------ccCEEEEEECCccceEEeCCCCHHHHHhh
Confidence 99 99999999999999999999887766654
No 6
>PHA02278 thioredoxin-like protein
Probab=99.88 E-value=3.7e-22 Score=138.82 Aligned_cols=93 Identities=12% Similarity=0.176 Sum_probs=79.8
Q ss_pred hhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCC----ccHHHHhCCCcCCCCCCC
Q 030433 51 PLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF----PNAAEKFGISLGGSMGQL 126 (177)
Q Consensus 51 ~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~----~~~~~~~~v~~~~~~~~~ 126 (177)
.++|++.+.+ ++. ++|+|||+||+||+.+.|.++++++++. .+..++++|++.+ +.++++|+|. ++
T Consensus 4 ~~~~~~~i~~-~~~--vvV~F~A~WCgpCk~m~p~l~~l~~~~~-~~~~~~~vdvd~~~~d~~~l~~~~~I~------~i 73 (103)
T PHA02278 4 LVDLNTAIRQ-KKD--VIVMITQDNCGKCEILKSVIPMFQESGD-IKKPILTLNLDAEDVDREKAVKLFDIM------ST 73 (103)
T ss_pred HHHHHHHHhC-CCc--EEEEEECCCCHHHHhHHHHHHHHHhhhc-CCceEEEEECCccccccHHHHHHCCCc------cc
Confidence 4788888765 444 9999999999999999999999998865 4478999999986 5899999999 99
Q ss_pred CEEEEEeCCEEeeeecCCCCCCccccc
Q 030433 127 PTYILFENNAEINRFPAFGFEEKFSHP 153 (177)
Q Consensus 127 Ptlii~~~G~~~~r~~g~~~~~~~~~~ 153 (177)
||+++|++|+++.|+.|..+.+.+.++
T Consensus 74 PT~i~fk~G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 74 PVLIGYKDGQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred cEEEEEECCEEEEEEeCCCCHHHHHhh
Confidence 999999999999999998766655443
No 7
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.87 E-value=1.6e-21 Score=135.56 Aligned_cols=88 Identities=17% Similarity=0.289 Sum_probs=79.5
Q ss_pred ChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCc---cHHHHhCCCcCCCCCCC
Q 030433 50 TPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP---NAAEKFGISLGGSMGQL 126 (177)
Q Consensus 50 ~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~~~~~~~ 126 (177)
+.++|++.+.+ .++++++|+|||+||++|+.+.|.++++++++ +++.|+++|.++++ +++++|+|. ++
T Consensus 2 ~~~~~~~~i~~-~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~~~~~~~l~~~~~V~------~~ 72 (103)
T cd02985 2 SVEELDEALKK-AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDENDSTMELCRREKII------EV 72 (103)
T ss_pred CHHHHHHHHHH-cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCCChHHHHHHHHcCCC------cC
Confidence 46789888877 55678999999999999999999999999998 45999999999875 789999999 99
Q ss_pred CEEEEEeCCEEeeeecCCCC
Q 030433 127 PTYILFENNAEINRFPAFGF 146 (177)
Q Consensus 127 Ptlii~~~G~~~~r~~g~~~ 146 (177)
||+++|++|+.+.++.|..+
T Consensus 73 Pt~~~~~~G~~v~~~~G~~~ 92 (103)
T cd02985 73 PHFLFYKDGEKIHEEEGIGP 92 (103)
T ss_pred CEEEEEeCCeEEEEEeCCCH
Confidence 99999999999999999765
No 8
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.86 E-value=1.4e-21 Score=139.28 Aligned_cols=106 Identities=16% Similarity=0.212 Sum_probs=93.6
Q ss_pred CcccCCcceeecChhHHHHHHhcCCCCceEEEEEecCCChh--hH--HHhHHHHHHHHHh--CCCCcEEEEEECCCCccH
Q 030433 38 PVFQKLGISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSST--CI--RASRIFPELSIAY--SNKNVSFGIVDLGLFPNA 111 (177)
Q Consensus 38 ~~~~~~~~~~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~--C~--~~~p~l~~~~~~~--~~~~~~~~~vd~~~~~~~ 111 (177)
|.+.+...+..+|.++|++.+.++.. +++++||++||+| |+ .+.|.+.++++++ . .++.+++||+++++++
T Consensus 3 ~~~~~~~~v~~lt~~nF~~~v~~~~~--~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~-~~v~~~kVD~d~~~~L 79 (120)
T cd03065 3 PEYDGKDRVIDLNEKNYKQVLKKYDV--LCLLYHEPVESDKEAQKQFQMEELVLELAAQVLED-KGIGFGLVDSKKDAKV 79 (120)
T ss_pred cccCCCcceeeCChhhHHHHHHhCCc--eEEEEECCCcCChhhChhhcchhhHHHHHHHHhhc-CCCEEEEEeCCCCHHH
Confidence 56788888999999999988877344 4999999999987 99 8889999999988 5 5799999999999999
Q ss_pred HHHhCCCcCCCCCCCCEEEEEeCCEEeeeecCCCCCCccccc
Q 030433 112 AEKFGISLGGSMGQLPTYILFENNAEINRFPAFGFEEKFSHP 153 (177)
Q Consensus 112 ~~~~~v~~~~~~~~~Ptlii~~~G~~~~r~~g~~~~~~~~~~ 153 (177)
+++|+|+ ++||+++|++|+.+. +.|..+++.+..|
T Consensus 80 a~~~~I~------~iPTl~lfk~G~~v~-~~G~~~~~~l~~~ 114 (120)
T cd03065 80 AKKLGLD------EEDSIYVFKDDEVIE-YDGEFAADTLVEF 114 (120)
T ss_pred HHHcCCc------cccEEEEEECCEEEE-eeCCCCHHHHHHH
Confidence 9999999 999999999999887 8899887766665
No 9
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.86 E-value=1.7e-21 Score=134.54 Aligned_cols=98 Identities=15% Similarity=0.256 Sum_probs=86.4
Q ss_pred ceeecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCC
Q 030433 45 ISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMG 124 (177)
Q Consensus 45 ~~~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~ 124 (177)
.+..++.++|++.+.+ + ++++|+|||+||++|+.+.|.+++++++++ +++.|+++|+++++.++++++|+
T Consensus 2 ~~~~l~~~~f~~~v~~-~--~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~-~~~~~~~vd~~~~~~~~~~~~v~------ 71 (101)
T cd03003 2 EIVTLDRGDFDAAVNS-G--EIWFVNFYSPRCSHCHDLAPTWREFAKEMD-GVIRIGAVNCGDDRMLCRSQGVN------ 71 (101)
T ss_pred CeEEcCHhhHHHHhcC-C--CeEEEEEECCCChHHHHhHHHHHHHHHHhc-CceEEEEEeCCccHHHHHHcCCC------
Confidence 4567889999988866 4 459999999999999999999999999997 46999999999999999999999
Q ss_pred CCCEEEEEeCCEEeeeecCCCCCCcccc
Q 030433 125 QLPTYILFENNAEINRFPAFGFEEKFSH 152 (177)
Q Consensus 125 ~~Ptlii~~~G~~~~r~~g~~~~~~~~~ 152 (177)
++||+++|++|+...++.|..+.+.+..
T Consensus 72 ~~Pt~~~~~~g~~~~~~~G~~~~~~l~~ 99 (101)
T cd03003 72 SYPSLYVFPSGMNPEKYYGDRSKESLVK 99 (101)
T ss_pred ccCEEEEEcCCCCcccCCCCCCHHHHHh
Confidence 9999999999998888888776655544
No 10
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.85 E-value=5.3e-21 Score=132.57 Aligned_cols=100 Identities=21% Similarity=0.315 Sum_probs=86.6
Q ss_pred ceeecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCC
Q 030433 45 ISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMG 124 (177)
Q Consensus 45 ~~~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~ 124 (177)
.+..++.++|++.+.++++ +++|+|||+||++|+.+.|.++++++++. .++.++++|++++++++++++|+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~--~v~v~f~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~~vd~~~~~~~~~~~~i~------ 72 (104)
T cd03004 2 SVITLTPEDFPELVLNRKE--PWLVDFYAPWCGPCQALLPELRKAARALK-GKVKVGSVDCQKYESLCQQANIR------ 72 (104)
T ss_pred cceEcCHHHHHHHHhcCCC--eEEEEEECCCCHHHHHHHHHHHHHHHHhc-CCcEEEEEECCchHHHHHHcCCC------
Confidence 3567888999988766344 59999999999999999999999999986 56999999999999999999999
Q ss_pred CCCEEEEEeCC-EEeeeecCCCC-CCccccc
Q 030433 125 QLPTYILFENN-AEINRFPAFGF-EEKFSHP 153 (177)
Q Consensus 125 ~~Ptlii~~~G-~~~~r~~g~~~-~~~~~~~ 153 (177)
++||+++|++| +...++.|..+ .+++..|
T Consensus 73 ~~Pt~~~~~~g~~~~~~~~G~~~~~~~l~~~ 103 (104)
T cd03004 73 AYPTIRLYPGNASKYHSYNGWHRDADSILEF 103 (104)
T ss_pred cccEEEEEcCCCCCceEccCCCCCHHHHHhh
Confidence 99999999887 88899999875 5555544
No 11
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.85 E-value=4.7e-21 Score=134.94 Aligned_cols=100 Identities=16% Similarity=0.168 Sum_probs=85.4
Q ss_pred ecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCC
Q 030433 48 KLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLP 127 (177)
Q Consensus 48 ~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~P 127 (177)
.++.++|++.+.....+++++|+|||+||++|+.+.|.++++++++++.++.++++|+++++.++++++|. ++|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~------~~P 81 (111)
T cd02963 8 SLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAH------SVP 81 (111)
T ss_pred eeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCc------cCC
Confidence 45678887654332456779999999999999999999999999997557999999999999999999999 999
Q ss_pred EEEEEeCCEEeeeecCCCCCCccccc
Q 030433 128 TYILFENNAEINRFPAFGFEEKFSHP 153 (177)
Q Consensus 128 tlii~~~G~~~~r~~g~~~~~~~~~~ 153 (177)
|+++|++|+...+..|..+.+.+..+
T Consensus 82 t~~i~~~g~~~~~~~G~~~~~~l~~~ 107 (111)
T cd02963 82 AIVGIINGQVTFYHDSSFTKQHVVDF 107 (111)
T ss_pred EEEEEECCEEEEEecCCCCHHHHHHH
Confidence 99999999999999998766655443
No 12
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.85 E-value=5.2e-21 Score=130.66 Aligned_cols=92 Identities=24% Similarity=0.372 Sum_probs=81.1
Q ss_pred HHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEEEE
Q 030433 53 QLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILF 132 (177)
Q Consensus 53 ~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii~ 132 (177)
+|++.+.+ .++++++|+|||+||++|+.+.|.++++++.++ .++.++++|+++++.++++|+|. ++||++++
T Consensus 2 ~f~~~i~~-~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~-~~~~~~~vd~~~~~~l~~~~~i~------~~Pt~~~~ 73 (96)
T cd02956 2 NFQQVLQE-STQVPVVVDFWAPRSPPSKELLPLLERLAEEYQ-GQFVLAKVNCDAQPQIAQQFGVQ------ALPTVYLF 73 (96)
T ss_pred ChHHHHHh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhC-CcEEEEEEeccCCHHHHHHcCCC------CCCEEEEE
Confidence 56777766 445679999999999999999999999999997 46999999999999999999999 99999999
Q ss_pred eCCEEeeeecCCCCCCcccc
Q 030433 133 ENNAEINRFPAFGFEEKFSH 152 (177)
Q Consensus 133 ~~G~~~~r~~g~~~~~~~~~ 152 (177)
++|+.+.++.|..+.+++..
T Consensus 74 ~~g~~~~~~~g~~~~~~l~~ 93 (96)
T cd02956 74 AAGQPVDGFQGAQPEEQLRQ 93 (96)
T ss_pred eCCEEeeeecCCCCHHHHHH
Confidence 99999999999876665544
No 13
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.85 E-value=2.4e-20 Score=131.61 Aligned_cols=105 Identities=16% Similarity=0.219 Sum_probs=88.4
Q ss_pred cceeecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCC
Q 030433 44 GISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSM 123 (177)
Q Consensus 44 ~~~~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~ 123 (177)
+.+.+++.++|.+.+.+.+.+++++|+||++||++|+.+.|.+++++++++ ++.|+++|.+++ .++++|+|.
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~~~-~l~~~~~i~----- 75 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP--ETKFVKINAEKA-FLVNYLDIK----- 75 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEchhh-HHHHhcCCC-----
Confidence 356778889998888763434569999999999999999999999999986 489999999998 999999999
Q ss_pred CCCCEEEEEeCCEEeeeecCCCCCCcccccccchHhH
Q 030433 124 GQLPTYILFENNAEINRFPAFGFEEKFSHPHITKKLI 160 (177)
Q Consensus 124 ~~~Ptlii~~~G~~~~r~~g~~~~~~~~~~~~~~~~~ 160 (177)
++||+++|++|+++.+..|..+..- ..++++.+
T Consensus 76 -~~Pt~~~f~~G~~v~~~~G~~~~~~---~~~~~~~l 108 (113)
T cd02957 76 -VLPTLLVYKNGELIDNIVGFEELGG---DDFTTEDL 108 (113)
T ss_pred -cCCEEEEEECCEEEEEEecHHHhCC---CCCCHHHH
Confidence 9999999999999999999765433 33444444
No 14
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.84 E-value=1.3e-20 Score=129.39 Aligned_cols=99 Identities=26% Similarity=0.393 Sum_probs=89.2
Q ss_pred eeecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCC
Q 030433 46 SNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQ 125 (177)
Q Consensus 46 ~~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~ 125 (177)
+..+|.++|++.+.+++ ++++|+||++||++|+.+.|.+++++++++. ++.|+.+|.++++.++++|+|. +
T Consensus 1 v~~lt~~~f~~~i~~~~--~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~------~ 71 (103)
T PF00085_consen 1 VIVLTDENFEKFINESD--KPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDENKELCKKYGVK------S 71 (103)
T ss_dssp SEEESTTTHHHHHTTTS--SEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTSHHHHHHTTCS------S
T ss_pred CEECCHHHHHHHHHccC--CCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhhccchhhhccCCC------C
Confidence 35678899998888733 4599999999999999999999999999985 8999999999999999999999 9
Q ss_pred CCEEEEEeCCEEeeeecCCCCCCccccc
Q 030433 126 LPTYILFENNAEINRFPAFGFEEKFSHP 153 (177)
Q Consensus 126 ~Ptlii~~~G~~~~r~~g~~~~~~~~~~ 153 (177)
+||++++++|+...++.|..+.+.+.+|
T Consensus 72 ~Pt~~~~~~g~~~~~~~g~~~~~~l~~~ 99 (103)
T PF00085_consen 72 VPTIIFFKNGKEVKRYNGPRNAESLIEF 99 (103)
T ss_dssp SSEEEEEETTEEEEEEESSSSHHHHHHH
T ss_pred CCEEEEEECCcEEEEEECCCCHHHHHHH
Confidence 9999999999999999999877766655
No 15
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=3.5e-21 Score=153.60 Aligned_cols=102 Identities=19% Similarity=0.307 Sum_probs=94.4
Q ss_pred ceeecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCC
Q 030433 45 ISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMG 124 (177)
Q Consensus 45 ~~~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~ 124 (177)
.+.++|..+|+..+..+.+.+||+|+||+|||++|+.+.|.++++..+|+ .++++.+||+++.++++.+|+|+
T Consensus 24 ~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~-G~f~LakvN~D~~p~vAaqfgiq------ 96 (304)
T COG3118 24 GIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYK-GKFKLAKVNCDAEPMVAAQFGVQ------ 96 (304)
T ss_pred cceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhC-CceEEEEecCCcchhHHHHhCcC------
Confidence 48999999997766544666789999999999999999999999999998 67999999999999999999999
Q ss_pred CCCEEEEEeCCEEeeeecCCCCCCccccc
Q 030433 125 QLPTYILFENNAEINRFPAFGFEEKFSHP 153 (177)
Q Consensus 125 ~~Ptlii~~~G~~~~r~~g~~~~~~~~~~ 153 (177)
++||++.|++|+.+.-+.|..+++.+..|
T Consensus 97 sIPtV~af~dGqpVdgF~G~qPesqlr~~ 125 (304)
T COG3118 97 SIPTVYAFKDGQPVDGFQGAQPESQLRQF 125 (304)
T ss_pred cCCeEEEeeCCcCccccCCCCcHHHHHHH
Confidence 99999999999999999999999888776
No 16
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.84 E-value=3.3e-20 Score=145.29 Aligned_cols=104 Identities=23% Similarity=0.271 Sum_probs=91.0
Q ss_pred CcceeecChhHHHHHHhcC--CCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcC
Q 030433 43 LGISNKLTPLQLEALLTEG--KTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLG 120 (177)
Q Consensus 43 ~~~~~~l~~~~~~~~l~~~--~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~ 120 (177)
+..+..+++++|++.+..+ ...++++|+|||+||++|+.+.|.+++++++++ ..+.+..+|++++++++++|+|+
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~-~~v~~~~VD~~~~~~l~~~~~I~-- 105 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALK-GQVNVADLDATRALNLAKRFAIK-- 105 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcC-CCeEEEEecCcccHHHHHHcCCC--
Confidence 3468899999999887642 234569999999999999999999999999997 46999999999999999999999
Q ss_pred CCCCCCCEEEEEeCCEEeeeecCCCCCCccccc
Q 030433 121 GSMGQLPTYILFENNAEINRFPAFGFEEKFSHP 153 (177)
Q Consensus 121 ~~~~~~Ptlii~~~G~~~~r~~g~~~~~~~~~~ 153 (177)
++||+++|++|+...+..|..+.+.+.+|
T Consensus 106 ----~~PTl~~f~~G~~v~~~~G~~s~e~L~~f 134 (224)
T PTZ00443 106 ----GYPTLLLFDKGKMYQYEGGDRSTEKLAAF 134 (224)
T ss_pred ----cCCEEEEEECCEEEEeeCCCCCHHHHHHH
Confidence 99999999999998888888777777665
No 17
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.84 E-value=2.8e-20 Score=128.97 Aligned_cols=87 Identities=13% Similarity=0.256 Sum_probs=77.9
Q ss_pred cChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCE
Q 030433 49 LTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPT 128 (177)
Q Consensus 49 l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Pt 128 (177)
-+.+++++.+++ ++ +++|+|||+||++|+.+.|.++++++++++..+.|..+|.+ .++++++|+|+ ++||
T Consensus 5 ~~~~~~~~~i~~-~~--~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~------~~Pt 74 (102)
T cd02948 5 NNQEEWEELLSN-KG--LTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGK------CEPT 74 (102)
T ss_pred cCHHHHHHHHcc-CC--eEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCC------cCcE
Confidence 356889888865 44 49999999999999999999999999998556899999999 78899999999 9999
Q ss_pred EEEEeCCEEeeeecCCC
Q 030433 129 YILFENNAEINRFPAFG 145 (177)
Q Consensus 129 lii~~~G~~~~r~~g~~ 145 (177)
+++|++|+.+.+..|..
T Consensus 75 ~~~~~~g~~~~~~~G~~ 91 (102)
T cd02948 75 FLFYKNGELVAVIRGAN 91 (102)
T ss_pred EEEEECCEEEEEEecCC
Confidence 99999999999999963
No 18
>PRK09381 trxA thioredoxin; Provisional
Probab=99.83 E-value=4.2e-20 Score=129.15 Aligned_cols=100 Identities=20% Similarity=0.300 Sum_probs=87.0
Q ss_pred cceeecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCC
Q 030433 44 GISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSM 123 (177)
Q Consensus 44 ~~~~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~ 123 (177)
..+.++++++|++.+.+.+ ++++|+||++||++|+.+.|.+++++++++ +++.++.+|+++.+.++++|++.
T Consensus 3 ~~v~~~~~~~~~~~v~~~~--~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~-~~~~~~~vd~~~~~~~~~~~~v~----- 74 (109)
T PRK09381 3 DKIIHLTDDSFDTDVLKAD--GAILVDFWAEWCGPCKMIAPILDEIADEYQ-GKLTVAKLNIDQNPGTAPKYGIR----- 74 (109)
T ss_pred CcceeeChhhHHHHHhcCC--CeEEEEEECCCCHHHHHHhHHHHHHHHHhC-CCcEEEEEECCCChhHHHhCCCC-----
Confidence 4678888999987654423 359999999999999999999999999998 46999999999999999999999
Q ss_pred CCCCEEEEEeCCEEeeeecCCCCCCcccc
Q 030433 124 GQLPTYILFENNAEINRFPAFGFEEKFSH 152 (177)
Q Consensus 124 ~~~Ptlii~~~G~~~~r~~g~~~~~~~~~ 152 (177)
++||+++|++|+...+..|..+.+++..
T Consensus 75 -~~Pt~~~~~~G~~~~~~~G~~~~~~l~~ 102 (109)
T PRK09381 75 -GIPTLLLFKNGEVAATKVGALSKGQLKE 102 (109)
T ss_pred -cCCEEEEEeCCeEEEEecCCCCHHHHHH
Confidence 9999999999999999999876554443
No 19
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.83 E-value=2.1e-20 Score=129.39 Aligned_cols=91 Identities=16% Similarity=0.234 Sum_probs=78.6
Q ss_pred HHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECC-CCccHHHHhCCCcCCCCCCCCEEEE
Q 030433 53 QLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLG-LFPNAAEKFGISLGGSMGQLPTYIL 131 (177)
Q Consensus 53 ~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~-~~~~~~~~~~v~~~~~~~~~Ptlii 131 (177)
.+.+.+.. .++++++|+|||+||++|+.+.|.+++++++++ ++.++.+|.+ +++.++++|+|. ++||+++
T Consensus 8 ~~~~~~~~-~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~--~~~~~~vd~~~~~~~l~~~~~V~------~~PT~~l 78 (100)
T cd02999 8 IALDLMAF-NREDYTAVLFYASWCPFSASFRPHFNALSSMFP--QIRHLAIEESSIKPSLLSRYGVV------GFPTILL 78 (100)
T ss_pred HHHHHHHh-cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc--cCceEEEECCCCCHHHHHhcCCe------ecCEEEE
Confidence 34445555 667789999999999999999999999999986 4889999998 889999999999 9999999
Q ss_pred EeCCEEeeeecCCCCCCccccc
Q 030433 132 FENNAEINRFPAFGFEEKFSHP 153 (177)
Q Consensus 132 ~~~G~~~~r~~g~~~~~~~~~~ 153 (177)
|++| .+.++.|..+.+.+..|
T Consensus 79 f~~g-~~~~~~G~~~~~~l~~f 99 (100)
T cd02999 79 FNST-PRVRYNGTRTLDSLAAF 99 (100)
T ss_pred EcCC-ceeEecCCCCHHHHHhh
Confidence 9999 78899998776665554
No 20
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=4.1e-20 Score=128.96 Aligned_cols=77 Identities=21% Similarity=0.441 Sum_probs=72.1
Q ss_pred CCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEEEEeCCEEeeeec
Q 030433 63 TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEINRFP 142 (177)
Q Consensus 63 ~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii~~~G~~~~r~~ 142 (177)
.+++++|+|||+||+||+.+.|.+.+++++|++ +.|+++|+++..+++++++|. ++||++++++|+++.++.
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde~~~~~~~~~V~------~~PTf~f~k~g~~~~~~v 91 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDELEEVAKEFNVK------AMPTFVFYKGGEEVDEVV 91 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEecccCHhHHHhcCce------EeeEEEEEECCEEEEEEe
Confidence 346699999999999999999999999999984 999999999999999999999 999999999999999999
Q ss_pred CCCCC
Q 030433 143 AFGFE 147 (177)
Q Consensus 143 g~~~~ 147 (177)
|....
T Consensus 92 Ga~~~ 96 (106)
T KOG0907|consen 92 GANKA 96 (106)
T ss_pred cCCHH
Confidence 98654
No 21
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.83 E-value=4e-20 Score=127.20 Aligned_cols=98 Identities=18% Similarity=0.333 Sum_probs=86.4
Q ss_pred eeecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCC--CCcEEEEEECCCCccHHHHhCCCcCCCC
Q 030433 46 SNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSN--KNVSFGIVDLGLFPNAAEKFGISLGGSM 123 (177)
Q Consensus 46 ~~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~~~~ 123 (177)
+..+++++|++.+.+ +. ++|+|||+||++|+.+.|.++++++++.. +++.++.+|+++++.++++|+|.
T Consensus 2 ~~~l~~~~f~~~~~~-~~---~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~----- 72 (102)
T cd03005 2 VLELTEDNFDHHIAE-GN---HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVR----- 72 (102)
T ss_pred eeECCHHHHHHHhhc-CC---EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCC-----
Confidence 456788999988876 43 99999999999999999999999999874 47999999999999999999999
Q ss_pred CCCCEEEEEeCCEEeeeecCCCCCCccccc
Q 030433 124 GQLPTYILFENNAEINRFPAFGFEEKFSHP 153 (177)
Q Consensus 124 ~~~Ptlii~~~G~~~~r~~g~~~~~~~~~~ 153 (177)
++||+++|++|+++.++.|..+.+.+.+|
T Consensus 73 -~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~ 101 (102)
T cd03005 73 -GYPTLLLFKDGEKVDKYKGTRDLDSLKEF 101 (102)
T ss_pred -cCCEEEEEeCCCeeeEeeCCCCHHHHHhh
Confidence 99999999999999999998876655544
No 22
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.83 E-value=3.8e-20 Score=129.33 Aligned_cols=100 Identities=22% Similarity=0.256 Sum_probs=83.9
Q ss_pred ceeecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCC-----CCcEEEEEECCCCccHHHHhCCCc
Q 030433 45 ISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSN-----KNVSFGIVDLGLFPNAAEKFGISL 119 (177)
Q Consensus 45 ~~~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~-----~~~~~~~vd~~~~~~~~~~~~v~~ 119 (177)
.+..+++++|++.+.. ++ +++|+|||+||++|+.+.|.+++++++++. .++.++++|++++++++++|+|+
T Consensus 2 ~v~~l~~~~f~~~i~~-~~--~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~- 77 (108)
T cd02996 2 EIVSLTSGNIDDILQS-AE--LVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRIN- 77 (108)
T ss_pred ceEEcCHhhHHHHHhc-CC--EEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCC-
Confidence 4678899999988866 44 499999999999999999999999887642 24899999999999999999999
Q ss_pred CCCCCCCCEEEEEeCCEE-eeeecCCCCCCccccc
Q 030433 120 GGSMGQLPTYILFENNAE-INRFPAFGFEEKFSHP 153 (177)
Q Consensus 120 ~~~~~~~Ptlii~~~G~~-~~r~~g~~~~~~~~~~ 153 (177)
++||+++|++|+. ..++.|..+.+.+..|
T Consensus 78 -----~~Ptl~~~~~g~~~~~~~~g~~~~~~l~~f 107 (108)
T cd02996 78 -----KYPTLKLFRNGMMMKREYRGQRSVEALAEF 107 (108)
T ss_pred -----cCCEEEEEeCCcCcceecCCCCCHHHHHhh
Confidence 9999999999984 4667787666655544
No 23
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.83 E-value=1.6e-19 Score=127.55 Aligned_cols=96 Identities=20% Similarity=0.214 Sum_probs=85.1
Q ss_pred cceeecCh-hHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCC
Q 030433 44 GISNKLTP-LQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGS 122 (177)
Q Consensus 44 ~~~~~l~~-~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~ 122 (177)
+.+..++. ++|++.+.+ ++. ++|+||++||++|+.+.|.+++++++++ +++|+++|.+++++++++|+|.
T Consensus 4 g~v~~i~~~~~~~~~i~~-~~~--vvV~f~a~~c~~C~~~~p~l~~la~~~~--~i~f~~Vd~~~~~~l~~~~~v~---- 74 (113)
T cd02989 4 GKYREVSDEKEFFEIVKS-SER--VVCHFYHPEFFRCKIMDKHLEILAKKHL--ETKFIKVNAEKAPFLVEKLNIK---- 74 (113)
T ss_pred CCeEEeCCHHHHHHHHhC-CCc--EEEEEECCCCccHHHHHHHHHHHHHHcC--CCEEEEEEcccCHHHHHHCCCc----
Confidence 35666676 899888877 444 9999999999999999999999999986 4899999999999999999999
Q ss_pred CCCCCEEEEEeCCEEeeeecCCCCCCcc
Q 030433 123 MGQLPTYILFENNAEINRFPAFGFEEKF 150 (177)
Q Consensus 123 ~~~~Ptlii~~~G~~~~r~~g~~~~~~~ 150 (177)
++||+++|++|+++.|+.|...-...
T Consensus 75 --~vPt~l~fk~G~~v~~~~g~~~~~~~ 100 (113)
T cd02989 75 --VLPTVILFKNGKTVDRIVGFEELGGK 100 (113)
T ss_pred --cCCEEEEEECCEEEEEEECccccCCC
Confidence 99999999999999999998765543
No 24
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.82 E-value=6.7e-20 Score=133.74 Aligned_cols=89 Identities=12% Similarity=0.230 Sum_probs=78.9
Q ss_pred ChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEE
Q 030433 50 TPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTY 129 (177)
Q Consensus 50 ~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptl 129 (177)
+.++|++.+.. ..+++++|+|||+||+||+.+.|.+++++++++ +...|++||++++++++++|+|+ +.|++
T Consensus 10 s~~e~d~~I~~-~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~-~~~~~~kVDVDe~~dla~~y~I~------~~~t~ 81 (142)
T PLN00410 10 SGWAVDQAILA-EEERLVVIRFGHDWDETCMQMDEVLASVAETIK-NFAVIYLVDITEVPDFNTMYELY------DPCTV 81 (142)
T ss_pred CHHHHHHHHHh-cCCCEEEEEEECCCChhHHHHHHHHHHHHHHcC-CceEEEEEECCCCHHHHHHcCcc------CCCcE
Confidence 35899888876 456779999999999999999999999999997 45888999999999999999999 88877
Q ss_pred E-EEeCCE-EeeeecCCCC
Q 030433 130 I-LFENNA-EINRFPAFGF 146 (177)
Q Consensus 130 i-i~~~G~-~~~r~~g~~~ 146 (177)
+ +|++|+ ++.+..|..+
T Consensus 82 ~~ffk~g~~~vd~~tG~~~ 100 (142)
T PLN00410 82 MFFFRNKHIMIDLGTGNNN 100 (142)
T ss_pred EEEEECCeEEEEEeccccc
Confidence 7 889999 9999988654
No 25
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.82 E-value=1.9e-19 Score=126.23 Aligned_cols=103 Identities=20% Similarity=0.272 Sum_probs=86.8
Q ss_pred hhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEE
Q 030433 51 PLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYI 130 (177)
Q Consensus 51 ~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptli 130 (177)
.+++++.+.+ ..+++++|.|||+||+||+.+.|.+++++++|+ +.+.|++||+++.++++++|+|. +.||++
T Consensus 2 ~~~~d~~i~~-~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~-~~~~f~kVDVDev~dva~~y~I~------amPtfv 73 (114)
T cd02986 2 KKEVDQAIKS-TAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLS-KMASIYLVDVDKVPVYTQYFDIS------YIPSTI 73 (114)
T ss_pred HHHHHHHHHh-cCCCEEEEEEeCCCChhHHHHHHHHHHHHHHcc-CceEEEEEeccccHHHHHhcCce------eCcEEE
Confidence 4678888876 467789999999999999999999999999996 33999999999999999999999 999999
Q ss_pred EEeCCEEeeeecCCCCCCcccccccchHhHh
Q 030433 131 LFENNAEINRFPAFGFEEKFSHPHITKKLIA 161 (177)
Q Consensus 131 i~~~G~~~~r~~g~~~~~~~~~~~~~~~~~~ 161 (177)
+|++|+-+.-=.|-.....+--..-+|++++
T Consensus 74 ffkngkh~~~d~gt~~~~k~~~~~~~k~~~i 104 (114)
T cd02986 74 FFFNGQHMKVDYGSPDHTKFVGSFKTKQDFI 104 (114)
T ss_pred EEECCcEEEEecCCCCCcEEEEEcCchhHHH
Confidence 9999998776667776666655445555543
No 26
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.82 E-value=5.6e-20 Score=128.78 Aligned_cols=96 Identities=13% Similarity=0.221 Sum_probs=85.9
Q ss_pred ceeecChhHHHHHHhcCCCCceEEEEEecCC--ChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCC
Q 030433 45 ISNKLTPLQLEALLTEGKTSRYWLVEFRAQC--SSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGS 122 (177)
Q Consensus 45 ~~~~l~~~~~~~~l~~~~~~~~vlV~F~a~w--C~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~ 122 (177)
.+..++.++|++.++. +.. ++|.||++| ||+|+.+.|.+++++++|+ +.+.|+++|+++++.++.+|+|+
T Consensus 11 ~~~~~~~~~~~~~~~~-~~~--~v~~f~~~~~~cp~c~~i~P~leela~e~~-~~v~f~kVdid~~~~la~~f~V~---- 82 (111)
T cd02965 11 GWPRVDAATLDDWLAA-GGD--LVLLLAGDPVRFPEVLDVAVVLPELLKAFP-GRFRAAVVGRADEQALAARFGVL---- 82 (111)
T ss_pred CCcccccccHHHHHhC-CCC--EEEEecCCcccCcchhhhHhHHHHHHHHCC-CcEEEEEEECCCCHHHHHHcCCC----
Confidence 4667888999888866 555 999999997 9999999999999999997 56899999999999999999999
Q ss_pred CCCCCEEEEEeCCEEeeeecCCCCCCcc
Q 030433 123 MGQLPTYILFENNAEINRFPAFGFEEKF 150 (177)
Q Consensus 123 ~~~~Ptlii~~~G~~~~r~~g~~~~~~~ 150 (177)
++||+++|++|+.+.++.|..+.+++
T Consensus 83 --sIPTli~fkdGk~v~~~~G~~~~~e~ 108 (111)
T cd02965 83 --RTPALLFFRDGRYVGVLAGIRDWDEY 108 (111)
T ss_pred --cCCEEEEEECCEEEEEEeCccCHHHH
Confidence 99999999999999999998765544
No 27
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.82 E-value=1.1e-19 Score=125.34 Aligned_cols=96 Identities=19% Similarity=0.272 Sum_probs=81.9
Q ss_pred ceeecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCC
Q 030433 45 ISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMG 124 (177)
Q Consensus 45 ~~~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~ 124 (177)
.+..++.++|++.+. ++ ++|+|||+||++|+.+.|.++++++.++..++.+.++|+++++.++++|+|.
T Consensus 2 ~v~~l~~~~f~~~~~--~~---~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~------ 70 (101)
T cd02994 2 NVVELTDSNWTLVLE--GE---WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVT------ 70 (101)
T ss_pred ceEEcChhhHHHHhC--CC---EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCc------
Confidence 366788999987763 33 7899999999999999999999999877567999999999999999999999
Q ss_pred CCCEEEEEeCCEEeeeecCCCCCCcccc
Q 030433 125 QLPTYILFENNAEINRFPAFGFEEKFSH 152 (177)
Q Consensus 125 ~~Ptlii~~~G~~~~r~~g~~~~~~~~~ 152 (177)
++||++++++|+. .++.|..+.+.+..
T Consensus 71 ~~Pt~~~~~~g~~-~~~~G~~~~~~l~~ 97 (101)
T cd02994 71 ALPTIYHAKDGVF-RRYQGPRDKEDLIS 97 (101)
T ss_pred ccCEEEEeCCCCE-EEecCCCCHHHHHH
Confidence 9999999999984 77888765554433
No 28
>PRK10996 thioredoxin 2; Provisional
Probab=99.81 E-value=2.9e-19 Score=130.65 Aligned_cols=99 Identities=20% Similarity=0.276 Sum_probs=86.4
Q ss_pred ceeecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCC
Q 030433 45 ISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMG 124 (177)
Q Consensus 45 ~~~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~ 124 (177)
.+..++.+++++.+.+ ++ +++|+||++||++|+.+.|.++++++++. .++.++++|.++++.++++|+|.
T Consensus 36 ~~i~~~~~~~~~~i~~-~k--~vvv~F~a~wC~~C~~~~~~l~~l~~~~~-~~v~~~~vd~~~~~~l~~~~~V~------ 105 (139)
T PRK10996 36 EVINATGETLDKLLQD-DL--PVVIDFWAPWCGPCRNFAPIFEDVAAERS-GKVRFVKVNTEAERELSARFRIR------ 105 (139)
T ss_pred CCEEcCHHHHHHHHhC-CC--eEEEEEECCCCHHHHHHHHHHHHHHHHhC-CCeEEEEEeCCCCHHHHHhcCCC------
Confidence 3556788899888766 44 49999999999999999999999999887 56999999999999999999999
Q ss_pred CCCEEEEEeCCEEeeeecCCCCCCccccc
Q 030433 125 QLPTYILFENNAEINRFPAFGFEEKFSHP 153 (177)
Q Consensus 125 ~~Ptlii~~~G~~~~r~~g~~~~~~~~~~ 153 (177)
++||+++|++|+.+.++.|..+++.+..|
T Consensus 106 ~~Ptlii~~~G~~v~~~~G~~~~e~l~~~ 134 (139)
T PRK10996 106 SIPTIMIFKNGQVVDMLNGAVPKAPFDSW 134 (139)
T ss_pred ccCEEEEEECCEEEEEEcCCCCHHHHHHH
Confidence 99999999999999999998765554443
No 29
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.80 E-value=5.2e-19 Score=120.77 Aligned_cols=89 Identities=25% Similarity=0.465 Sum_probs=79.9
Q ss_pred ChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEE
Q 030433 50 TPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTY 129 (177)
Q Consensus 50 ~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptl 129 (177)
+.+++++.+.+ ..+++++|+||++||++|+.+.|.++++++++. .++.++++|.++.++++++|++. ++||+
T Consensus 1 s~~~~~~~~~~-~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~-~~i~~~~vd~~~~~~~~~~~~i~------~~Pt~ 72 (97)
T cd02984 1 SEEEFEELLKS-DASKLLVLHFWAPWAEPCKQMNQVFEELAKEAF-PSVLFLSIEAEELPEISEKFEIT------AVPTF 72 (97)
T ss_pred CHHHHHHHHhh-CCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhC-CceEEEEEccccCHHHHHhcCCc------cccEE
Confidence 35788888887 436679999999999999999999999999973 67999999999999999999999 99999
Q ss_pred EEEeCCEEeeeecCCCC
Q 030433 130 ILFENNAEINRFPAFGF 146 (177)
Q Consensus 130 ii~~~G~~~~r~~g~~~ 146 (177)
++|++|+++.+..|..+
T Consensus 73 ~~~~~g~~~~~~~g~~~ 89 (97)
T cd02984 73 VFFRNGTIVDRVSGADP 89 (97)
T ss_pred EEEECCEEEEEEeCCCH
Confidence 99999999999999753
No 30
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.80 E-value=1.1e-18 Score=132.29 Aligned_cols=106 Identities=14% Similarity=0.211 Sum_probs=89.5
Q ss_pred CcceeecCh-hHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCC
Q 030433 43 LGISNKLTP-LQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGG 121 (177)
Q Consensus 43 ~~~~~~l~~-~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~ 121 (177)
.+.+..++. ++|.+.+.+++++.+++|+||++||++|+.+.|.+++++++|+ +++|++||+++. .++.+|+|.
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d~~-~l~~~f~v~--- 134 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP--AVKFCKIRASAT-GASDEFDTD--- 134 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC--CeEEEEEeccch-hhHHhCCCC---
Confidence 346778888 9998888764555679999999999999999999999999986 499999999987 899999999
Q ss_pred CCCCCCEEEEEeCCEEeeeecCCCCCCcccccccchHhH
Q 030433 122 SMGQLPTYILFENNAEINRFPAFGFEEKFSHPHITKKLI 160 (177)
Q Consensus 122 ~~~~~Ptlii~~~G~~~~r~~g~~~~~~~~~~~~~~~~~ 160 (177)
++||+++|++|+.+.++.|.....- ..++.+++
T Consensus 135 ---~vPTlllyk~G~~v~~~vG~~~~~g---~~f~~~~l 167 (175)
T cd02987 135 ---ALPALLVYKGGELIGNFVRVTEDLG---EDFDAEDL 167 (175)
T ss_pred ---CCCEEEEEECCEEEEEEechHHhcC---CCCCHHHH
Confidence 9999999999999999999865331 14555544
No 31
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.80 E-value=3.5e-19 Score=124.12 Aligned_cols=99 Identities=17% Similarity=0.235 Sum_probs=82.3
Q ss_pred eeecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCC--CccHHHHhCCCcCCCC
Q 030433 46 SNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL--FPNAAEKFGISLGGSM 123 (177)
Q Consensus 46 ~~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~~~~ 123 (177)
+..+++++|++.+.+.+ ++++|+|||+||++|+.+.|.++++++++. ..+.++.+|++. ++.++++|+|.
T Consensus 2 v~~l~~~~~~~~i~~~~--~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~-~~~~~~~v~~~~~~~~~~~~~~~i~----- 73 (109)
T cd03002 2 VYELTPKNFDKVVHNTN--YTTLVEFYAPWCGHCKNLKPEYAKAAKELD-GLVQVAAVDCDEDKNKPLCGKYGVQ----- 73 (109)
T ss_pred eEEcchhhHHHHHhcCC--CeEEEEEECCCCHHHHhhChHHHHHHHHhc-CCceEEEEecCccccHHHHHHcCCC-----
Confidence 45788899998887634 459999999999999999999999999987 568999999998 88999999999
Q ss_pred CCCCEEEEEeCCE-----EeeeecCCCCCCccccc
Q 030433 124 GQLPTYILFENNA-----EINRFPAFGFEEKFSHP 153 (177)
Q Consensus 124 ~~~Ptlii~~~G~-----~~~r~~g~~~~~~~~~~ 153 (177)
++||+++|++|+ ...++.|..+.+.+.+|
T Consensus 74 -~~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~f 107 (109)
T cd03002 74 -GFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDF 107 (109)
T ss_pred -cCCEEEEEeCCCcccccccccccCccCHHHHHHH
Confidence 999999998886 34556666555555444
No 32
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.80 E-value=7.2e-19 Score=121.21 Aligned_cols=99 Identities=18% Similarity=0.265 Sum_probs=85.5
Q ss_pred eeecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCC-CCcEEEEEECCC--CccHHHHhCCCcCCC
Q 030433 46 SNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSN-KNVSFGIVDLGL--FPNAAEKFGISLGGS 122 (177)
Q Consensus 46 ~~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~-~~~~~~~vd~~~--~~~~~~~~~v~~~~~ 122 (177)
+..++++++++.+++ ++. ++|+|||+||++|+.+.|.++++++.++. ..+.++.+|++. ++.++++++++
T Consensus 2 ~~~l~~~~~~~~~~~-~~~--~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~---- 74 (104)
T cd02997 2 VVHLTDEDFRKFLKK-EKH--VLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVK---- 74 (104)
T ss_pred eEEechHhHHHHHhh-CCC--EEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCc----
Confidence 456788899888877 544 99999999999999999999999998863 458899999998 89999999999
Q ss_pred CCCCCEEEEEeCCEEeeeecCCCCCCccccc
Q 030433 123 MGQLPTYILFENNAEINRFPAFGFEEKFSHP 153 (177)
Q Consensus 123 ~~~~Ptlii~~~G~~~~r~~g~~~~~~~~~~ 153 (177)
++||++++++|+.+.++.|..+.+.+..|
T Consensus 75 --~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~ 103 (104)
T cd02997 75 --GFPTFKYFENGKFVEKYEGERTAEDIIEF 103 (104)
T ss_pred --cccEEEEEeCCCeeEEeCCCCCHHHHHhh
Confidence 99999999999999999998776655544
No 33
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.79 E-value=9.3e-19 Score=122.68 Aligned_cols=102 Identities=18% Similarity=0.231 Sum_probs=81.6
Q ss_pred ceeecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCC-CccHHH-HhCCCcCCC
Q 030433 45 ISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL-FPNAAE-KFGISLGGS 122 (177)
Q Consensus 45 ~~~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~-~~~~~~-~~~v~~~~~ 122 (177)
.+.+++.++|++.+.....+++++|.||++||++|+.+.|.+.++++.+++.++.++.+|++. ...++. .++++
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~---- 77 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLK---- 77 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCC----
Confidence 467889999998875434556699999999999999999999999999986679999999997 567776 59999
Q ss_pred CCCCCEEEEEeCC-EEeeeecCC-CCCCcccc
Q 030433 123 MGQLPTYILFENN-AEINRFPAF-GFEEKFSH 152 (177)
Q Consensus 123 ~~~~Ptlii~~~G-~~~~r~~g~-~~~~~~~~ 152 (177)
++||+++|++| +...++.|. .+.+.+..
T Consensus 78 --~~Pti~~f~~~~~~~~~y~g~~~~~~~l~~ 107 (109)
T cd02993 78 --SFPTILFFPKNSRQPIKYPSEQRDVDSLLM 107 (109)
T ss_pred --cCCEEEEEcCCCCCceeccCCCCCHHHHHh
Confidence 99999999665 556667674 34444443
No 34
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.79 E-value=1.2e-18 Score=120.09 Aligned_cols=99 Identities=19% Similarity=0.318 Sum_probs=84.0
Q ss_pred eeecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCC
Q 030433 46 SNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQ 125 (177)
Q Consensus 46 ~~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~ 125 (177)
+..++++++++.+.+.++ +++|+||++||++|+.+.|.+.++++++. .++.++.+|+++++.++++++|+ +
T Consensus 2 v~~l~~~~~~~~i~~~~~--~vlv~f~a~~C~~C~~~~~~~~~~~~~~~-~~~~~~~id~~~~~~~~~~~~i~------~ 72 (103)
T cd03001 2 VVELTDSNFDKKVLNSDD--VWLVEFYAPWCGHCKNLAPEWKKAAKALK-GIVKVGAVDADVHQSLAQQYGVR------G 72 (103)
T ss_pred eEEcCHHhHHHHHhcCCC--cEEEEEECCCCHHHHHHhHHHHHHHHHhc-CCceEEEEECcchHHHHHHCCCC------c
Confidence 467788999888876343 49999999999999999999999999987 56999999999999999999999 9
Q ss_pred CCEEEEEeCC-EEeeeecCCCCCCccccc
Q 030433 126 LPTYILFENN-AEINRFPAFGFEEKFSHP 153 (177)
Q Consensus 126 ~Ptlii~~~G-~~~~r~~g~~~~~~~~~~ 153 (177)
+|++++|++| +...++.|..+.+.+..|
T Consensus 73 ~P~~~~~~~~~~~~~~~~g~~~~~~l~~~ 101 (103)
T cd03001 73 FPTIKVFGAGKNSPQDYQGGRTAKAIVSA 101 (103)
T ss_pred cCEEEEECCCCcceeecCCCCCHHHHHHH
Confidence 9999999888 555667777666655554
No 35
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.78 E-value=1.4e-18 Score=119.66 Aligned_cols=99 Identities=17% Similarity=0.253 Sum_probs=83.3
Q ss_pred eeecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCC-CCcEEEEEECCCCccHHHHhCCCcCCCCC
Q 030433 46 SNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSN-KNVSFGIVDLGLFPNAAEKFGISLGGSMG 124 (177)
Q Consensus 46 ~~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~-~~~~~~~vd~~~~~~~~~~~~v~~~~~~~ 124 (177)
+..+++++|++.+.++++ +++|+||++||++|+.+.|.++++++.+++ .++.++++|++++ +++..+++.
T Consensus 2 v~~l~~~~f~~~i~~~~~--~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~------ 72 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDK--DVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVD------ 72 (104)
T ss_pred eEEEchhhhHHHHhCCCC--cEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCC------
Confidence 567889999988877444 499999999999999999999999999875 4699999999987 578889998
Q ss_pred CCCEEEEEeCCE--EeeeecCCCCCCccccc
Q 030433 125 QLPTYILFENNA--EINRFPAFGFEEKFSHP 153 (177)
Q Consensus 125 ~~Ptlii~~~G~--~~~r~~g~~~~~~~~~~ 153 (177)
++||+++|++|+ ...++.|..+.+.+..|
T Consensus 73 ~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~f 103 (104)
T cd02995 73 GFPTILFFPAGDKSNPIKYEGDRTLEDLIKF 103 (104)
T ss_pred CCCEEEEEcCCCcCCceEccCCcCHHHHHhh
Confidence 999999998887 66677887666555544
No 36
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.77 E-value=3.5e-18 Score=117.71 Aligned_cols=100 Identities=22% Similarity=0.326 Sum_probs=82.2
Q ss_pred eeecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhC-CCCcEEEEEECCC-CccHHHHhCCCcCCCC
Q 030433 46 SNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYS-NKNVSFGIVDLGL-FPNAAEKFGISLGGSM 123 (177)
Q Consensus 46 ~~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~-~~~~~~~~vd~~~-~~~~~~~~~v~~~~~~ 123 (177)
+..++++++++.+.+++ ++++|+||++||++|+.+.|.+.+++++++ .+++.++.+|.++ ++.+++++++.
T Consensus 2 ~~~l~~~~~~~~~~~~~--~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~----- 74 (105)
T cd02998 2 VVELTDSNFDKVVGDDK--KDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVS----- 74 (105)
T ss_pred eEEcchhcHHHHhcCCC--CcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCC-----
Confidence 45678889988776533 349999999999999999999999999987 3569999999999 99999999999
Q ss_pred CCCCEEEEEeCC-EEeeeecCCCCCCccccc
Q 030433 124 GQLPTYILFENN-AEINRFPAFGFEEKFSHP 153 (177)
Q Consensus 124 ~~~Ptlii~~~G-~~~~r~~g~~~~~~~~~~ 153 (177)
++|++++|++| +...++.|..+.+++.+|
T Consensus 75 -~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~ 104 (105)
T cd02998 75 -GFPTLKFFPKGSTEPVKYEGGRDLEDLVKF 104 (105)
T ss_pred -CcCEEEEEeCCCCCccccCCccCHHHHHhh
Confidence 99999999776 556666676555544443
No 37
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.76 E-value=5.5e-18 Score=115.73 Aligned_cols=96 Identities=26% Similarity=0.426 Sum_probs=82.4
Q ss_pred cChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCE
Q 030433 49 LTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPT 128 (177)
Q Consensus 49 l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Pt 128 (177)
++.+++++.+.+.+ ++++|+||++||++|+.+.|.+++++++++ +++.++.+|.++++.++++|++. ++|+
T Consensus 1 i~~~~~~~~~~~~~--~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~vd~~~~~~~~~~~~v~------~~P~ 71 (101)
T TIGR01068 1 LTDANFDETIASSD--KPVLVDFWAPWCGPCKMIAPILEELAKEYE-GKVKFVKLNVDENPDIAAKYGIR------SIPT 71 (101)
T ss_pred CCHHHHHHHHhhcC--CcEEEEEECCCCHHHHHhCHHHHHHHHHhc-CCeEEEEEECCCCHHHHHHcCCC------cCCE
Confidence 35678887776523 459999999999999999999999998887 56999999999999999999999 9999
Q ss_pred EEEEeCCEEeeeecCCCCCCccccc
Q 030433 129 YILFENNAEINRFPAFGFEEKFSHP 153 (177)
Q Consensus 129 lii~~~G~~~~r~~g~~~~~~~~~~ 153 (177)
++++++|+...+..|..+.+.+..+
T Consensus 72 ~~~~~~g~~~~~~~g~~~~~~l~~~ 96 (101)
T TIGR01068 72 LLLFKNGKEVDRSVGALPKAALKQL 96 (101)
T ss_pred EEEEeCCcEeeeecCCCCHHHHHHH
Confidence 9999999999988888765544443
No 38
>PTZ00051 thioredoxin; Provisional
Probab=99.76 E-value=7.5e-18 Score=115.30 Aligned_cols=84 Identities=25% Similarity=0.457 Sum_probs=75.8
Q ss_pred hhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEE
Q 030433 51 PLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYI 130 (177)
Q Consensus 51 ~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptli 130 (177)
.+++++.++. ++. ++++||++||++|+.+.|.+++++++++ ++.++.+|.+++..++++|++. ++||++
T Consensus 8 ~~~~~~~~~~-~~~--vli~f~~~~C~~C~~~~~~l~~l~~~~~--~~~~~~vd~~~~~~~~~~~~v~------~~Pt~~ 76 (98)
T PTZ00051 8 QAEFESTLSQ-NEL--VIVDFYAEWCGPCKRIAPFYEECSKEYT--KMVFVKVDVDELSEVAEKENIT------SMPTFK 76 (98)
T ss_pred HHHHHHHHhc-CCe--EEEEEECCCCHHHHHHhHHHHHHHHHcC--CcEEEEEECcchHHHHHHCCCc------eeeEEE
Confidence 4678877766 444 9999999999999999999999999875 4999999999999999999999 999999
Q ss_pred EEeCCEEeeeecCCC
Q 030433 131 LFENNAEINRFPAFG 145 (177)
Q Consensus 131 i~~~G~~~~r~~g~~ 145 (177)
++++|+.+.++.|..
T Consensus 77 ~~~~g~~~~~~~G~~ 91 (98)
T PTZ00051 77 VFKNGSVVDTLLGAN 91 (98)
T ss_pred EEeCCeEEEEEeCCC
Confidence 999999999999973
No 39
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.75 E-value=8.4e-18 Score=115.35 Aligned_cols=91 Identities=19% Similarity=0.296 Sum_probs=78.7
Q ss_pred HHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEEEEe
Q 030433 54 LEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFE 133 (177)
Q Consensus 54 ~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii~~ 133 (177)
++..+.++++ +++++||++||++|+.+.|.+++++++++ .++.+..+|.++.+++++++++. ++|++++++
T Consensus 5 ~~~~~~~~~~--~vlv~f~a~~C~~C~~~~~~l~~l~~~~~-~~v~~~~id~d~~~~l~~~~~v~------~vPt~~i~~ 75 (97)
T cd02949 5 LRKLYHESDR--LILVLYTSPTCGPCRTLKPILNKVIDEFD-GAVHFVEIDIDEDQEIAEAAGIM------GTPTVQFFK 75 (97)
T ss_pred HHHHHHhCCC--eEEEEEECCCChhHHHHHHHHHHHHHHhC-CceEEEEEECCCCHHHHHHCCCe------eccEEEEEE
Confidence 3444444244 59999999999999999999999999987 47999999999999999999999 999999999
Q ss_pred CCEEeeeecCCCCCCccccc
Q 030433 134 NNAEINRFPAFGFEEKFSHP 153 (177)
Q Consensus 134 ~G~~~~r~~g~~~~~~~~~~ 153 (177)
+|+++.++.|..+++++..+
T Consensus 76 ~g~~v~~~~g~~~~~~~~~~ 95 (97)
T cd02949 76 DKELVKEISGVKMKSEYREF 95 (97)
T ss_pred CCeEEEEEeCCccHHHHHHh
Confidence 99999999999877665543
No 40
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.75 E-value=1e-17 Score=119.93 Aligned_cols=92 Identities=13% Similarity=0.088 Sum_probs=73.8
Q ss_pred ceeecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCc-----------cHHH
Q 030433 45 ISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP-----------NAAE 113 (177)
Q Consensus 45 ~~~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~-----------~~~~ 113 (177)
....++.+++.+.+++ ++. ++|+||++|||+|+.+.|.++++.++. +.+++.+|+++++ ++.+
T Consensus 7 ~~~~it~~~~~~~i~~-~~~--~iv~f~~~~Cp~C~~~~P~l~~~~~~~---~~~~y~vdvd~~~~~~~~~~~~~~~~~~ 80 (122)
T TIGR01295 7 GLEVTTVVRALEALDK-KET--ATFFIGRKTCPYCRKFSGTLSGVVAQT---KAPIYYIDSENNGSFEMSSLNDLTAFRS 80 (122)
T ss_pred cceecCHHHHHHHHHc-CCc--EEEEEECCCChhHHHHhHHHHHHHHhc---CCcEEEEECCCccCcCcccHHHHHHHHH
Confidence 3456788999989888 555 999999999999999999999999983 3789999998654 3445
Q ss_pred HhCCCcCCCCCCCCEEEEEeCCEEeeeecCC
Q 030433 114 KFGISLGGSMGQLPTYILFENNAEINRFPAF 144 (177)
Q Consensus 114 ~~~v~~~~~~~~~Ptlii~~~G~~~~r~~g~ 144 (177)
+|++. ....++||+++|++|+++.++.|.
T Consensus 81 ~~~i~--~~i~~~PT~v~~k~Gk~v~~~~G~ 109 (122)
T TIGR01295 81 RFGIP--TSFMGTPTFVHITDGKQVSVRCGS 109 (122)
T ss_pred HcCCc--ccCCCCCEEEEEeCCeEEEEEeCC
Confidence 66544 011169999999999999999985
No 41
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.75 E-value=7.5e-18 Score=115.49 Aligned_cols=95 Identities=20% Similarity=0.298 Sum_probs=81.3
Q ss_pred cChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCC-CcEEEEEECCCCccHHHHhCCCcCCCCCCCC
Q 030433 49 LTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNK-NVSFGIVDLGLFPNAAEKFGISLGGSMGQLP 127 (177)
Q Consensus 49 l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~P 127 (177)
+++++|++.+.+ ++. ++|+||++||++|+.+.|.++++++.+... ++.++.+|+++++.++++|+++ ++|
T Consensus 1 l~~~~~~~~~~~-~~~--~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~------~~P 71 (102)
T TIGR01126 1 LTASNFDDIVLS-NKD--VLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVS------GFP 71 (102)
T ss_pred CchhhHHHHhcc-CCc--EEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCC------cCC
Confidence 467888888875 444 999999999999999999999999998744 5999999999999999999999 999
Q ss_pred EEEEEeCCEEeeeecCCCCCCcccc
Q 030433 128 TYILFENNAEINRFPAFGFEEKFSH 152 (177)
Q Consensus 128 tlii~~~G~~~~r~~g~~~~~~~~~ 152 (177)
+++++++|+...++.|..+.+.+..
T Consensus 72 ~~~~~~~~~~~~~~~g~~~~~~l~~ 96 (102)
T TIGR01126 72 TIKFFPKGKKPVDYEGGRDLEAIVE 96 (102)
T ss_pred EEEEecCCCcceeecCCCCHHHHHH
Confidence 9999988876778888766554443
No 42
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.74 E-value=3.7e-18 Score=118.36 Aligned_cols=91 Identities=24% Similarity=0.415 Sum_probs=76.6
Q ss_pred hHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHH---HHHHHHhCCCCcEEEEEECCC----CccHHHHhCCCcCCCCC
Q 030433 52 LQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIF---PELSIAYSNKNVSFGIVDLGL----FPNAAEKFGISLGGSMG 124 (177)
Q Consensus 52 ~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l---~~~~~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~~~~~ 124 (177)
+++++.+++ ++ +++|+||++||++|+.+.|.+ +++.+.+.+ ++.++.+|+++ .+.++++|++.
T Consensus 2 ~~~~~~~~~-~k--~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~------ 71 (104)
T cd02953 2 AALAQALAQ-GK--PVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVF------ 71 (104)
T ss_pred HHHHHHHHc-CC--eEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCC------
Confidence 466667766 44 499999999999999999988 678888874 79999999987 56788999999
Q ss_pred CCCEEEEEe--CCEEeeeecCCCCCCcccc
Q 030433 125 QLPTYILFE--NNAEINRFPAFGFEEKFSH 152 (177)
Q Consensus 125 ~~Ptlii~~--~G~~~~r~~g~~~~~~~~~ 152 (177)
++||+++|+ +|+.+.++.|..+.+++..
T Consensus 72 ~~Pti~~~~~~~g~~~~~~~G~~~~~~l~~ 101 (104)
T cd02953 72 GPPTYLFYGPGGEPEPLRLPGFLTADEFLE 101 (104)
T ss_pred CCCEEEEECCCCCCCCcccccccCHHHHHH
Confidence 999999997 8999999999887665543
No 43
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.74 E-value=9.8e-18 Score=123.02 Aligned_cols=90 Identities=16% Similarity=0.296 Sum_probs=75.5
Q ss_pred hHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCC--ccHHHHhCCCcCCCCCCCCEE
Q 030433 52 LQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF--PNAAEKFGISLGGSMGQLPTY 129 (177)
Q Consensus 52 ~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~~~~~~~Ptl 129 (177)
.++++.+.+ + ++++|+|||+||++|+.+.|.+.++++++. .++.|+.+|++.. ..++++|+|. ++||+
T Consensus 11 ~~~~~a~~~-g--k~vvV~F~A~WC~~C~~~~p~l~~l~~~~~-~~~~~v~v~vd~~~~~~~~~~~~V~------~iPt~ 80 (142)
T cd02950 11 TPPEVALSN-G--KPTLVEFYADWCTVCQEMAPDVAKLKQKYG-DQVNFVMLNVDNPKWLPEIDRYRVD------GIPHF 80 (142)
T ss_pred CCHHHHHhC-C--CEEEEEEECCcCHHHHHhHHHHHHHHHHhc-cCeeEEEEEcCCcccHHHHHHcCCC------CCCEE
Confidence 456666655 4 459999999999999999999999999997 4588888888754 4789999999 99999
Q ss_pred EEE-eCCEEeeeecCCCCCCccc
Q 030433 130 ILF-ENNAEINRFPAFGFEEKFS 151 (177)
Q Consensus 130 ii~-~~G~~~~r~~g~~~~~~~~ 151 (177)
++| ++|+++.++.|..+.+++.
T Consensus 81 v~~~~~G~~v~~~~G~~~~~~l~ 103 (142)
T cd02950 81 VFLDREGNEEGQSIGLQPKQVLA 103 (142)
T ss_pred EEECCCCCEEEEEeCCCCHHHHH
Confidence 999 5899999999987665443
No 44
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.74 E-value=1.7e-17 Score=112.63 Aligned_cols=97 Identities=22% Similarity=0.297 Sum_probs=83.5
Q ss_pred ecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhC-CCCcEEEEEECCCCccHHHHhCCCcCCCCCCC
Q 030433 48 KLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYS-NKNVSFGIVDLGLFPNAAEKFGISLGGSMGQL 126 (177)
Q Consensus 48 ~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~-~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~ 126 (177)
.++.+++++.+.+ ++. ++|+||++||++|+.+.|.+.++++.+. ..++.++.+|+++++.++++|+|. ++
T Consensus 2 ~l~~~~~~~~i~~-~~~--~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~------~~ 72 (101)
T cd02961 2 ELTDDNFDELVKD-SKD--VLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVR------GY 72 (101)
T ss_pred cccHHHHHHHHhC-CCc--EEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCC------CC
Confidence 4677899988888 544 9999999999999999999999999884 467999999999999999999999 99
Q ss_pred CEEEEEeCC-EEeeeecCCCCCCccccc
Q 030433 127 PTYILFENN-AEINRFPAFGFEEKFSHP 153 (177)
Q Consensus 127 Ptlii~~~G-~~~~r~~g~~~~~~~~~~ 153 (177)
||++++++| +...++.|..+.+++.+|
T Consensus 73 Pt~~~~~~~~~~~~~~~g~~~~~~i~~~ 100 (101)
T cd02961 73 PTIKLFPNGSKEPVKYEGPRTLESLVEF 100 (101)
T ss_pred CEEEEEcCCCcccccCCCCcCHHHHHhh
Confidence 999999877 778888887665555443
No 45
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.73 E-value=1.1e-17 Score=116.20 Aligned_cols=90 Identities=18% Similarity=0.392 Sum_probs=72.7
Q ss_pred hHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCC--CCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEE
Q 030433 52 LQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSN--KNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTY 129 (177)
Q Consensus 52 ~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptl 129 (177)
++|++. .+ .++++|+|||+||++|+.+.|.+++++++++. .++.+..+|++.++.++++|+|. ++||+
T Consensus 7 ~~~~~~-~~---~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~------~~Pt~ 76 (104)
T cd03000 7 DSFKDV-RK---EDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVR------GYPTI 76 (104)
T ss_pred hhhhhh-cc---CCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCc------cccEE
Confidence 566653 23 23599999999999999999999999999853 34889999999999999999999 99999
Q ss_pred EEEeCCEEeeeecCCCCCCcccc
Q 030433 130 ILFENNAEINRFPAFGFEEKFSH 152 (177)
Q Consensus 130 ii~~~G~~~~r~~g~~~~~~~~~ 152 (177)
++|++|. ..++.|..+.+.+..
T Consensus 77 ~l~~~~~-~~~~~G~~~~~~l~~ 98 (104)
T cd03000 77 KLLKGDL-AYNYRGPRTKDDIVE 98 (104)
T ss_pred EEEcCCC-ceeecCCCCHHHHHH
Confidence 9998774 466777655444433
No 46
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.73 E-value=5.2e-17 Score=124.74 Aligned_cols=94 Identities=14% Similarity=0.200 Sum_probs=81.9
Q ss_pred CcceeecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCC
Q 030433 43 LGISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGS 122 (177)
Q Consensus 43 ~~~~~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~ 122 (177)
-+.+..++.++|...+..+.++.+|+|+||++||++|+.+.|.+++++++|+ +++|+++|.++. ..+|++.
T Consensus 81 ~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~ad~~---~~~~~i~---- 151 (192)
T cd02988 81 FGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP--DTKFVKIISTQC---IPNYPDK---- 151 (192)
T ss_pred CCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC--CCEEEEEEhHHh---HhhCCCC----
Confidence 3568888999997766553555679999999999999999999999999996 499999999864 6889999
Q ss_pred CCCCCEEEEEeCCEEeeeecCCCCC
Q 030433 123 MGQLPTYILFENNAEINRFPAFGFE 147 (177)
Q Consensus 123 ~~~~Ptlii~~~G~~~~r~~g~~~~ 147 (177)
++||+++|++|+.+.++.|...-
T Consensus 152 --~lPTlliyk~G~~v~~ivG~~~~ 174 (192)
T cd02988 152 --NLPTILVYRNGDIVKQFIGLLEF 174 (192)
T ss_pred --CCCEEEEEECCEEEEEEeCchhh
Confidence 99999999999999999998663
No 47
>PTZ00102 disulphide isomerase; Provisional
Probab=99.72 E-value=7.7e-17 Score=138.61 Aligned_cols=101 Identities=18% Similarity=0.244 Sum_probs=88.4
Q ss_pred CcceeecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCC--CCcEEEEEECCCCccHHHHhCCCcC
Q 030433 43 LGISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSN--KNVSFGIVDLGLFPNAAEKFGISLG 120 (177)
Q Consensus 43 ~~~~~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~ 120 (177)
+..+..++.++|++.+.+ ++. ++|+|||+||++|+++.|.+.++++.+.. .++.++.+|++++..++++|+|.
T Consensus 31 ~~~v~~l~~~~f~~~i~~-~~~--~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~-- 105 (477)
T PTZ00102 31 SEHVTVLTDSTFDKFITE-NEI--VLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVR-- 105 (477)
T ss_pred CCCcEEcchhhHHHHHhc-CCc--EEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCC--
Confidence 356889999999998877 544 99999999999999999999999887753 45999999999999999999999
Q ss_pred CCCCCCCEEEEEeCCEEeeeecCCCCCCccccc
Q 030433 121 GSMGQLPTYILFENNAEINRFPAFGFEEKFSHP 153 (177)
Q Consensus 121 ~~~~~~Ptlii~~~G~~~~r~~g~~~~~~~~~~ 153 (177)
++||+++|++|+.+ ++.|..+.+.+..|
T Consensus 106 ----~~Pt~~~~~~g~~~-~y~g~~~~~~l~~~ 133 (477)
T PTZ00102 106 ----GYPTIKFFNKGNPV-NYSGGRTADGIVSW 133 (477)
T ss_pred ----cccEEEEEECCceE-EecCCCCHHHHHHH
Confidence 99999999999877 88888877776655
No 48
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=3.4e-17 Score=127.54 Aligned_cols=90 Identities=23% Similarity=0.431 Sum_probs=82.9
Q ss_pred ChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEE
Q 030433 50 TPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTY 129 (177)
Q Consensus 50 ~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptl 129 (177)
+++.|+..+.. ...+.++|+|+|+||+||+++.|.+..++.+|+ +..|.+||+++....+..++|+ +.||+
T Consensus 8 ~d~df~~~ls~-ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp--~aVFlkVdVd~c~~taa~~gV~------amPTF 78 (288)
T KOG0908|consen 8 SDSDFQRELSA-AGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP--GAVFLKVDVDECRGTAATNGVN------AMPTF 78 (288)
T ss_pred CcHHHHHhhhc-cCceEEEEEEEecccchHHhhhhHHHHhhhhCc--ccEEEEEeHHHhhchhhhcCcc------cCceE
Confidence 35789999988 677889999999999999999999999999995 5999999999999999999999 99999
Q ss_pred EEEeCCEEeeeecCCCCCC
Q 030433 130 ILFENNAEINRFPAFGFEE 148 (177)
Q Consensus 130 ii~~~G~~~~r~~g~~~~~ 148 (177)
++|+||..+.++.|.+..+
T Consensus 79 iff~ng~kid~~qGAd~~g 97 (288)
T KOG0908|consen 79 IFFRNGVKIDQIQGADASG 97 (288)
T ss_pred EEEecCeEeeeecCCCHHH
Confidence 9999999999999987643
No 49
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.71 E-value=3.9e-17 Score=115.37 Aligned_cols=82 Identities=20% Similarity=0.285 Sum_probs=70.6
Q ss_pred CceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEEEEeCCEEee--ee
Q 030433 64 SRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEIN--RF 141 (177)
Q Consensus 64 ~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii~~~G~~~~--r~ 141 (177)
++.++|+||++||++|+.+.|.++++++++ +++.+..+|.+++++++++|+|. ++||++++++|+... ++
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~--~~i~~~~vd~d~~~~l~~~~~v~------~vPt~~i~~~g~~~~~~~~ 93 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS--DKLKLEIYDFDEDKEKAEKYGVE------RVPTTIFLQDGGKDGGIRY 93 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhc--CceEEEEEeCCcCHHHHHHcCCC------cCCEEEEEeCCeecceEEE
Confidence 334999999999999999999999999886 45999999999999999999999 999999999876555 67
Q ss_pred cCCCCCCccccc
Q 030433 142 PAFGFEEKFSHP 153 (177)
Q Consensus 142 ~g~~~~~~~~~~ 153 (177)
.|..+..++.++
T Consensus 94 ~G~~~~~el~~~ 105 (113)
T cd02975 94 YGLPAGYEFASL 105 (113)
T ss_pred EecCchHHHHHH
Confidence 787776655544
No 50
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.70 E-value=2.2e-16 Score=111.62 Aligned_cols=91 Identities=20% Similarity=0.253 Sum_probs=75.8
Q ss_pred ceeecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCC--CCcEEEEEECC--CCccHHHHhCCCcC
Q 030433 45 ISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSN--KNVSFGIVDLG--LFPNAAEKFGISLG 120 (177)
Q Consensus 45 ~~~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~--~~~~~~~vd~~--~~~~~~~~~~v~~~ 120 (177)
.+.++++++|++.+.+ .+ ++++|+|||+||++|+.+.|.++++++++++ +.+.+..+|++ +++.++++|+++
T Consensus 2 ~v~~l~~~~f~~~i~~-~~-~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~-- 77 (114)
T cd02992 2 PVIVLDAASFNSALLG-SP-SAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVT-- 77 (114)
T ss_pred CeEECCHHhHHHHHhc-CC-CeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCC--
Confidence 4678899999988887 43 5699999999999999999999999998753 34889999975 467899999999
Q ss_pred CCCCCCCEEEEEeCCEEeeeecCC
Q 030433 121 GSMGQLPTYILFENNAEINRFPAF 144 (177)
Q Consensus 121 ~~~~~~Ptlii~~~G~~~~r~~g~ 144 (177)
++||+++|++|+ .....|.
T Consensus 78 ----~~Pt~~lf~~~~-~~~~~~~ 96 (114)
T cd02992 78 ----GYPTLRYFPPFS-KEATDGL 96 (114)
T ss_pred ----CCCEEEEECCCC-ccCCCCC
Confidence 999999999888 4444444
No 51
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=7.4e-17 Score=137.58 Aligned_cols=106 Identities=16% Similarity=0.144 Sum_probs=94.9
Q ss_pred CCcceeecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCC--CcEEEEEECCCCccHHHHhCCCc
Q 030433 42 KLGISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNK--NVSFGIVDLGLFPNAAEKFGISL 119 (177)
Q Consensus 42 ~~~~~~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~ 119 (177)
.++.+..++.++|++.+.. +.- ++|.||||||++|+.+.|.+++.++..... .+..++||..++.+++++|+|+
T Consensus 23 ~~~~Vl~Lt~dnf~~~i~~-~~~--vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~- 98 (493)
T KOG0190|consen 23 AEEDVLVLTKDNFKETING-HEF--VLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVR- 98 (493)
T ss_pred cccceEEEecccHHHHhcc-Cce--EEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCC-
Confidence 4567899999999999988 654 899999999999999999999999988754 7999999999999999999999
Q ss_pred CCCCCCCCEEEEEeCCEEeeeecCCCCCCcccccccc
Q 030433 120 GGSMGQLPTYILFENNAEINRFPAFGFEEKFSHPHIT 156 (177)
Q Consensus 120 ~~~~~~~Ptlii~~~G~~~~r~~g~~~~~~~~~~~~~ 156 (177)
++||+.+|+||+....+.|....+.++.|...
T Consensus 99 -----gyPTlkiFrnG~~~~~Y~G~r~adgIv~wl~k 130 (493)
T KOG0190|consen 99 -----GYPTLKIFRNGRSAQDYNGPREADGIVKWLKK 130 (493)
T ss_pred -----CCCeEEEEecCCcceeccCcccHHHHHHHHHh
Confidence 99999999999987888888888888777543
No 52
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.67 E-value=6.9e-16 Score=102.67 Aligned_cols=89 Identities=26% Similarity=0.495 Sum_probs=77.0
Q ss_pred HHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEEEE
Q 030433 53 QLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILF 132 (177)
Q Consensus 53 ~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii~ 132 (177)
++++.+.+ + ++++|+||++||++|+.+.|.++++.++ .+++.++.+|.++.+.+++++++. ++|+++++
T Consensus 2 ~~~~~~~~-~--~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~v~------~~P~~~~~ 70 (93)
T cd02947 2 EFEELIKS-A--KPVVVDFWAPWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDENPELAEEYGVR------SIPTFLFF 70 (93)
T ss_pred chHHHHhc-C--CcEEEEEECCCChhHHHhhHHHHHHHHH--CCCceEEEEECCCChhHHHhcCcc------cccEEEEE
Confidence 46666666 4 3499999999999999999999999988 367999999999999999999999 99999999
Q ss_pred eCCEEeeeecCCCCCCcccc
Q 030433 133 ENNAEINRFPAFGFEEKFSH 152 (177)
Q Consensus 133 ~~G~~~~r~~g~~~~~~~~~ 152 (177)
++|+.+.++.|..+.+.+..
T Consensus 71 ~~g~~~~~~~g~~~~~~l~~ 90 (93)
T cd02947 71 KNGKEVDRVVGADPKEELEE 90 (93)
T ss_pred ECCEEEEEEecCCCHHHHHH
Confidence 99999999998876554433
No 53
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.66 E-value=5.2e-16 Score=111.02 Aligned_cols=91 Identities=16% Similarity=0.249 Sum_probs=72.7
Q ss_pred hHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHH---HHHHHhCCCCcEEEEEECCCC-------------ccHHHHh
Q 030433 52 LQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFP---ELSIAYSNKNVSFGIVDLGLF-------------PNAAEKF 115 (177)
Q Consensus 52 ~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~---~~~~~~~~~~~~~~~vd~~~~-------------~~~~~~~ 115 (177)
+++++++++ + +++++|+|||+||++|+.+.|.+. ++.+.+. +++.++.+|++.. ..++.+|
T Consensus 4 ~~~~~a~~~-~-~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~ 80 (125)
T cd02951 4 EDLAEAAAD-G-KKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIR-AHFVVVYINIDGDKEVTDFDGEALSEKELARKY 80 (125)
T ss_pred HHHHHHHHc-C-CCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHH-hheEEEEEEccCCceeeccCCCCccHHHHHHHc
Confidence 566666666 4 134999999999999999999884 5666665 5688999998864 5789999
Q ss_pred CCCcCCCCCCCCEEEEEeC--CEEeeeecCCCCCCccc
Q 030433 116 GISLGGSMGQLPTYILFEN--NAEINRFPAFGFEEKFS 151 (177)
Q Consensus 116 ~v~~~~~~~~~Ptlii~~~--G~~~~r~~g~~~~~~~~ 151 (177)
++. ++||++++++ |+++.++.|..+.+.+.
T Consensus 81 ~v~------~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~ 112 (125)
T cd02951 81 RVR------FTPTVIFLDPEGGKEIARLPGYLPPDEFL 112 (125)
T ss_pred CCc------cccEEEEEcCCCCceeEEecCCCCHHHHH
Confidence 999 9999999964 69999999987655443
No 54
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.65 E-value=7.2e-16 Score=131.76 Aligned_cols=89 Identities=18% Similarity=0.248 Sum_probs=76.1
Q ss_pred CCcceeecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCc-cHH-HHhCCCc
Q 030433 42 KLGISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP-NAA-EKFGISL 119 (177)
Q Consensus 42 ~~~~~~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~-~~~-~~~~v~~ 119 (177)
.+..+..++.++|++.+...+.+++++|+|||+||++|+.+.|.++++++++++.++.++++|++.+. .++ ++|+|+
T Consensus 349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~- 427 (463)
T TIGR00424 349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLG- 427 (463)
T ss_pred CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCC-
Confidence 34478889999999988622556679999999999999999999999999998667999999999764 444 689999
Q ss_pred CCCCCCCCEEEEEeCCE
Q 030433 120 GGSMGQLPTYILFENNA 136 (177)
Q Consensus 120 ~~~~~~~Ptlii~~~G~ 136 (177)
++||+++|++|+
T Consensus 428 -----~~PTii~Fk~g~ 439 (463)
T TIGR00424 428 -----SFPTILFFPKHS 439 (463)
T ss_pred -----ccceEEEEECCC
Confidence 999999999885
No 55
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.64 E-value=1e-15 Score=130.67 Aligned_cols=101 Identities=19% Similarity=0.247 Sum_probs=88.3
Q ss_pred ceeecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCC--CcEEEEEECCCCccHHHHhCCCcCCC
Q 030433 45 ISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNK--NVSFGIVDLGLFPNAAEKFGISLGGS 122 (177)
Q Consensus 45 ~~~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~~~ 122 (177)
.+..++.+++++.+++ ++. ++|+|||+||++|+.+.|.+.++++.+... ++.++.+|+++++.++++++|.
T Consensus 2 ~v~~l~~~~~~~~i~~-~~~--~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~---- 74 (462)
T TIGR01130 2 DVLVLTKDNFDDFIKS-HEF--VLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVS---- 74 (462)
T ss_pred CceECCHHHHHHHHhc-CCC--EEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCc----
Confidence 4567889999988877 544 999999999999999999999999887643 4999999999999999999999
Q ss_pred CCCCCEEEEEeCCEE-eeeecCCCCCCcccccc
Q 030433 123 MGQLPTYILFENNAE-INRFPAFGFEEKFSHPH 154 (177)
Q Consensus 123 ~~~~Ptlii~~~G~~-~~r~~g~~~~~~~~~~~ 154 (177)
++||+++|++|+. +.++.|..+.+.+..|.
T Consensus 75 --~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~i 105 (462)
T TIGR01130 75 --GYPTLKIFRNGEDSVSDYNGPRDADGIVKYM 105 (462)
T ss_pred --cccEEEEEeCCccceeEecCCCCHHHHHHHH
Confidence 9999999999988 78889988777766553
No 56
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.63 E-value=2.6e-15 Score=106.75 Aligned_cols=81 Identities=15% Similarity=0.201 Sum_probs=68.1
Q ss_pred ChhHHHHHHhcCCCCceEEEEEec-------CCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCC-------ccHHHHh
Q 030433 50 TPLQLEALLTEGKTSRYWLVEFRA-------QCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF-------PNAAEKF 115 (177)
Q Consensus 50 ~~~~~~~~l~~~~~~~~vlV~F~a-------~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~-------~~~~~~~ 115 (177)
+.++|++.+.. .++++++|+||| +||++|+.+.|.++++.++++ .++.|++||+++. .+++.++
T Consensus 8 ~~~~f~~~i~~-~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~-~~v~fv~Vdvd~~~~w~d~~~~~~~~~ 85 (119)
T cd02952 8 GYEEFLKLLKS-HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP-EDCVFIYCDVGDRPYWRDPNNPFRTDP 85 (119)
T ss_pred CHHHHHHHHHh-cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC-CCCEEEEEEcCCcccccCcchhhHhcc
Confidence 45788888876 556679999999 999999999999999999997 4699999999864 4778888
Q ss_pred CCCcCCCCCCCCEEEEEeCCEE
Q 030433 116 GISLGGSMGQLPTYILFENNAE 137 (177)
Q Consensus 116 ~v~~~~~~~~~Ptlii~~~G~~ 137 (177)
+|.+ ++||++++++|+.
T Consensus 86 ~I~~-----~iPT~~~~~~~~~ 102 (119)
T cd02952 86 KLTT-----GVPTLLRWKTPQR 102 (119)
T ss_pred Cccc-----CCCEEEEEcCCce
Confidence 8742 8999999987753
No 57
>PLN02309 5'-adenylylsulfate reductase
Probab=99.63 E-value=1.5e-15 Score=129.73 Aligned_cols=89 Identities=20% Similarity=0.270 Sum_probs=77.4
Q ss_pred CCcceeecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECC-CCccHHH-HhCCCc
Q 030433 42 KLGISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLG-LFPNAAE-KFGISL 119 (177)
Q Consensus 42 ~~~~~~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~-~~~~~~~-~~~v~~ 119 (177)
.++.+..++.++|++.+...+.+++++|+|||+||++|+.+.|.++++++++...++.|+++|++ .+..++. +|+|.
T Consensus 343 ~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~- 421 (457)
T PLN02309 343 NSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLG- 421 (457)
T ss_pred CCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCc-
Confidence 34578889999999887532556679999999999999999999999999998778999999999 7778886 69999
Q ss_pred CCCCCCCCEEEEEeCCE
Q 030433 120 GGSMGQLPTYILFENNA 136 (177)
Q Consensus 120 ~~~~~~~Ptlii~~~G~ 136 (177)
++||+++|++|.
T Consensus 422 -----~~PTil~f~~g~ 433 (457)
T PLN02309 422 -----SFPTILLFPKNS 433 (457)
T ss_pred -----eeeEEEEEeCCC
Confidence 999999998775
No 58
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.62 E-value=4.6e-15 Score=105.41 Aligned_cols=90 Identities=10% Similarity=0.081 Sum_probs=68.6
Q ss_pred CceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCc-cHHHHhCCCcCCCCCC--CCEEEEE-eCCEEee
Q 030433 64 SRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP-NAAEKFGISLGGSMGQ--LPTYILF-ENNAEIN 139 (177)
Q Consensus 64 ~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~~~~~~~--~Ptlii~-~~G~~~~ 139 (177)
+++++|+|||+||++|+.+.|.+.+...... .+..|+.+|++.++ ...++|++. + +||++++ .+|+++.
T Consensus 19 ~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~~~~~~~~~~~------g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 19 GKPLMLLIHKTWCGACKALKPKFAESKEISE-LSHNFVMVNLEDDEEPKDEEFSPD------GGYIPRILFLDPSGDVHP 91 (117)
T ss_pred CCcEEEEEeCCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecCCCCchhhhcccC------CCccceEEEECCCCCCch
Confidence 4459999999999999999999988776554 34567778887765 456788887 6 9999999 5999999
Q ss_pred eecCCCCCCcccccccchHhH
Q 030433 140 RFPAFGFEEKFSHPHITKKLI 160 (177)
Q Consensus 140 r~~g~~~~~~~~~~~~~~~~~ 160 (177)
++.+.....+...|.-.-+.+
T Consensus 92 ~~~~~~~~~~~~~f~~~~~~~ 112 (117)
T cd02959 92 EIINKKGNPNYKYFYSSAAQV 112 (117)
T ss_pred hhccCCCCccccccCCCHHHH
Confidence 877776666655554333333
No 59
>PTZ00062 glutaredoxin; Provisional
Probab=99.61 E-value=5.2e-15 Score=114.37 Aligned_cols=81 Identities=10% Similarity=0.189 Sum_probs=70.6
Q ss_pred cChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCE
Q 030433 49 LTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPT 128 (177)
Q Consensus 49 l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Pt 128 (177)
.+.+++++.++++... ++++|||+||++|+.+.|.+++++++|+ ++.|++||.+ |+|. ++||
T Consensus 4 ~~~ee~~~~i~~~~g~--~vl~f~a~w~~~C~~m~~vl~~l~~~~~--~~~F~~V~~d--------~~V~------~vPt 65 (204)
T PTZ00062 4 IKKEEKDKLIESNTGK--LVLYVKSSKEPEYEQLMDVCNALVEDFP--SLEFYVVNLA--------DANN------EYGV 65 (204)
T ss_pred CCHHHHHHHHhcCCCc--EEEEEeCCCCcchHHHHHHHHHHHHHCC--CcEEEEEccc--------cCcc------cceE
Confidence 3567888888752233 8999999999999999999999999996 4999999976 9999 9999
Q ss_pred EEEEeCCEEeeeecCCCCC
Q 030433 129 YILFENNAEINRFPAFGFE 147 (177)
Q Consensus 129 lii~~~G~~~~r~~g~~~~ 147 (177)
+++|++|++++|+.|....
T Consensus 66 fv~~~~g~~i~r~~G~~~~ 84 (204)
T PTZ00062 66 FEFYQNSQLINSLEGCNTS 84 (204)
T ss_pred EEEEECCEEEeeeeCCCHH
Confidence 9999999999999998653
No 60
>PTZ00102 disulphide isomerase; Provisional
Probab=99.60 E-value=4.1e-15 Score=127.95 Aligned_cols=103 Identities=16% Similarity=0.216 Sum_probs=86.5
Q ss_pred CcceeecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCC-CCcEEEEEECCCCccHHHHhCCCcCC
Q 030433 43 LGISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSN-KNVSFGIVDLGLFPNAAEKFGISLGG 121 (177)
Q Consensus 43 ~~~~~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~-~~~~~~~vd~~~~~~~~~~~~v~~~~ 121 (177)
...+..+++++|++.+.++++. ++|+|||+||++|+.+.|.++++++.+.+ +.+.++.+|.+.+...+++++++
T Consensus 356 ~~~v~~l~~~~f~~~v~~~~k~--vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~--- 430 (477)
T PTZ00102 356 DGPVKVVVGNTFEEIVFKSDKD--VLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWS--- 430 (477)
T ss_pred CCCeEEecccchHHHHhcCCCC--EEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCc---
Confidence 3458889999998886553555 99999999999999999999999998874 35889999999999999999999
Q ss_pred CCCCCCEEEEEeCCEEe-eeecCCCCCCccccc
Q 030433 122 SMGQLPTYILFENNAEI-NRFPAFGFEEKFSHP 153 (177)
Q Consensus 122 ~~~~~Ptlii~~~G~~~-~r~~g~~~~~~~~~~ 153 (177)
++||+++|++|+.+ .++.|..+.+.+..|
T Consensus 431 ---~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~ 460 (477)
T PTZ00102 431 ---AFPTILFVKAGERTPIPYEGERTVEGFKEF 460 (477)
T ss_pred ---ccCeEEEEECCCcceeEecCcCCHHHHHHH
Confidence 99999999877654 578888776665554
No 61
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.59 E-value=4.1e-15 Score=128.69 Aligned_cols=85 Identities=12% Similarity=0.054 Sum_probs=71.2
Q ss_pred CCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEEC----------------------------CCCccHHHH
Q 030433 63 TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDL----------------------------GLFPNAAEK 114 (177)
Q Consensus 63 ~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~----------------------------~~~~~~~~~ 114 (177)
++++++|+|||+||++|+.+.|.+++++++++.+++.++.|+. +.+..+++.
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~ 134 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQS 134 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHH
Confidence 4567999999999999999999999999999866777776643 344567889
Q ss_pred hCCCcCCCCCCCCEEEEE-eCCEEeeeecCCCCCCccccc
Q 030433 115 FGISLGGSMGQLPTYILF-ENNAEINRFPAFGFEEKFSHP 153 (177)
Q Consensus 115 ~~v~~~~~~~~~Ptlii~-~~G~~~~r~~g~~~~~~~~~~ 153 (177)
|+|+ ++||++++ ++|+++.++.|..+.+++..+
T Consensus 135 fgV~------giPTt~IIDkdGkIV~~~~G~~~~eeL~a~ 168 (521)
T PRK14018 135 LNIS------VYPSWAIIGKDGDVQRIVKGSISEAQALAL 168 (521)
T ss_pred cCCC------CcCeEEEEcCCCeEEEEEeCCCCHHHHHHH
Confidence 9999 99999777 799999999999887766554
No 62
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.56 E-value=5e-15 Score=118.59 Aligned_cols=83 Identities=24% Similarity=0.456 Sum_probs=70.4
Q ss_pred CCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCC--cEEEEEECCCCccHHHHhCCCcCCCCCCCCEEEEEeCCEEee
Q 030433 62 KTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKN--VSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEIN 139 (177)
Q Consensus 62 ~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~--~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii~~~G~~~~ 139 (177)
.....|+|+||||||++|+++.|.|+++.-++++.+ ++++++|.++.+.++.+++|+ ++||+.++++|-.+.
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiq------GYPTIk~~kgd~a~d 114 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQ------GYPTIKFFKGDHAID 114 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccC------CCceEEEecCCeeee
Confidence 444459999999999999999999999988777544 778999999999999999999 999999999999877
Q ss_pred eecCCCCCCccc
Q 030433 140 RFPAFGFEEKFS 151 (177)
Q Consensus 140 r~~g~~~~~~~~ 151 (177)
.+.|+ .++.++
T Consensus 115 YRG~R-~Kd~ii 125 (468)
T KOG4277|consen 115 YRGGR-EKDAII 125 (468)
T ss_pred cCCCc-cHHHHH
Confidence 66555 444444
No 63
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.54 E-value=5.7e-14 Score=104.21 Aligned_cols=74 Identities=16% Similarity=0.144 Sum_probs=55.9
Q ss_pred EEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCC------------ccHH-HHh---CCCcCCCCCCCCEEE
Q 030433 67 WLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF------------PNAA-EKF---GISLGGSMGQLPTYI 130 (177)
Q Consensus 67 vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~------------~~~~-~~~---~v~~~~~~~~~Ptli 130 (177)
.+|+|||+||++|+.+.|.+++++++|+ +.++.|+.+.. .... ..+ ++. ++||++
T Consensus 53 ~lvnFWAsWCppCr~e~P~L~~l~~~~~---~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~------~iPTt~ 123 (153)
T TIGR02738 53 ALVFFYQSTCPYCHQFAPVLKRFSQQFG---LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPV------VTPATF 123 (153)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHcC---CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCC------CCCeEE
Confidence 7999999999999999999999999984 66777776643 1222 334 677 999999
Q ss_pred EE-eCCEE-eeeecCCCCCCc
Q 030433 131 LF-ENNAE-INRFPAFGFEEK 149 (177)
Q Consensus 131 i~-~~G~~-~~r~~g~~~~~~ 149 (177)
++ ++|+. ..+..|..+.++
T Consensus 124 LID~~G~~i~~~~~G~~s~~~ 144 (153)
T TIGR02738 124 LVNVNTRKAYPVLQGAVDEAE 144 (153)
T ss_pred EEeCCCCEEEEEeecccCHHH
Confidence 99 45664 556788765543
No 64
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.53 E-value=5.4e-14 Score=103.45 Aligned_cols=73 Identities=15% Similarity=0.294 Sum_probs=58.7
Q ss_pred CCCceEEEEEecCCChhhHHHhHHHHHHHHHhCC-------CCcEEEEEECCCCc-------------------------
Q 030433 62 KTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSN-------KNVSFGIVDLGLFP------------------------- 109 (177)
Q Consensus 62 ~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~-------~~~~~~~vd~~~~~------------------------- 109 (177)
-++++++|+|||+||++|+.++|.+.++.+++++ +++.++.|+.++..
T Consensus 23 ~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~ 102 (146)
T cd03008 23 LENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRR 102 (146)
T ss_pred hCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHH
Confidence 4556799999999999999999999998876653 36899999877432
Q ss_pred cHHHHhCCCcCCCCCCCCEEEEE-eCCEEeee
Q 030433 110 NAAEKFGISLGGSMGQLPTYILF-ENNAEINR 140 (177)
Q Consensus 110 ~~~~~~~v~~~~~~~~~Ptlii~-~~G~~~~r 140 (177)
.++++|++. ++|+++++ ++|+.+.+
T Consensus 103 ~l~~~y~v~------~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 103 ELEAQFSVE------ELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHHcCCC------CCCEEEEECCCCcEEee
Confidence 345567777 99999999 58888765
No 65
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.53 E-value=2.9e-14 Score=94.17 Aligned_cols=73 Identities=19% Similarity=0.326 Sum_probs=62.9
Q ss_pred EEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEEEEeCCEEeeeecCCCC
Q 030433 67 WLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEINRFPAFGF 146 (177)
Q Consensus 67 vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii~~~G~~~~r~~g~~~ 146 (177)
.+..||++||++|+.+.|.+++++++++ .++.+..+|.+++++++++|++. ++||+++ +|+ .++.|..+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~~vd~~~~~~~~~~~~v~------~vPt~~~--~g~--~~~~G~~~ 70 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMG-DAVEVEYINVMENPQKAMEYGIM------AVPAIVI--NGD--VEFIGAPT 70 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhc-CceEEEEEeCccCHHHHHHcCCc------cCCEEEE--CCE--EEEecCCC
Confidence 3678999999999999999999999987 55999999999999999999999 9999986 776 36778765
Q ss_pred CCcc
Q 030433 147 EEKF 150 (177)
Q Consensus 147 ~~~~ 150 (177)
.+++
T Consensus 71 ~~~l 74 (82)
T TIGR00411 71 KEEL 74 (82)
T ss_pred HHHH
Confidence 5543
No 66
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.51 E-value=6.8e-14 Score=109.20 Aligned_cols=81 Identities=21% Similarity=0.306 Sum_probs=68.9
Q ss_pred EEEEEec---CCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEEEEeCCEEee-eec
Q 030433 67 WLVEFRA---QCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEIN-RFP 142 (177)
Q Consensus 67 vlV~F~a---~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii~~~G~~~~-r~~ 142 (177)
.++.|++ +||++|+.+.|.++++++++..-.+.++.+|.+++++++++|+|. ++||+++|++|+... ++.
T Consensus 22 ~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~------~~Pt~~~f~~g~~~~~~~~ 95 (215)
T TIGR02187 22 EIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVE------RVPTTIILEEGKDGGIRYT 95 (215)
T ss_pred EEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCC------ccCEEEEEeCCeeeEEEEe
Confidence 5666887 999999999999999999985333556777777999999999999 999999999999985 899
Q ss_pred CCCCCCccccc
Q 030433 143 AFGFEEKFSHP 153 (177)
Q Consensus 143 g~~~~~~~~~~ 153 (177)
|..+.+++.+|
T Consensus 96 G~~~~~~l~~~ 106 (215)
T TIGR02187 96 GIPAGYEFAAL 106 (215)
T ss_pred ecCCHHHHHHH
Confidence 98887766554
No 67
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=4.7e-14 Score=120.55 Aligned_cols=108 Identities=18% Similarity=0.250 Sum_probs=85.7
Q ss_pred cCCcccCC--cceeecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCC-CcEEEEEECCCCccHH
Q 030433 36 QQPVFQKL--GISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNK-NVSFGIVDLGLFPNAA 112 (177)
Q Consensus 36 ~~~~~~~~--~~~~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~-~~~~~~vd~~~~~~~~ 112 (177)
++|..... +++..+.+++|++.+.+.+++ |+|.||||||+||+++.|.++++++.|++. ++.+.++|.+.|.-..
T Consensus 356 SqpiPe~~~~~pVkvvVgknfd~iv~de~Kd--VLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~~~ 433 (493)
T KOG0190|consen 356 SQPIPEDNDRSPVKVVVGKNFDDIVLDEGKD--VLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDVPS 433 (493)
T ss_pred cCCCCcccccCCeEEEeecCHHHHhhccccc--eEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccCcc
Confidence 45554433 468899999999998776888 999999999999999999999999999864 7999999998886543
Q ss_pred HHhCCCcCCCCCCCCEEEEEeCCE--EeeeecCCCCCCccccc
Q 030433 113 EKFGISLGGSMGQLPTYILFENNA--EINRFPAFGFEEKFSHP 153 (177)
Q Consensus 113 ~~~~v~~~~~~~~~Ptlii~~~G~--~~~r~~g~~~~~~~~~~ 153 (177)
..++ ++||+.+++.|. ....+.|...-+.+..+
T Consensus 434 --~~~~------~fPTI~~~pag~k~~pv~y~g~R~le~~~~f 468 (493)
T KOG0190|consen 434 --LKVD------GFPTILFFPAGHKSNPVIYNGDRTLEDLKKF 468 (493)
T ss_pred --cccc------ccceEEEecCCCCCCCcccCCCcchHHHHhh
Confidence 4677 899999997665 34455666666655554
No 68
>PHA02125 thioredoxin-like protein
Probab=99.49 E-value=1.8e-13 Score=89.68 Aligned_cols=63 Identities=21% Similarity=0.324 Sum_probs=55.2
Q ss_pred EEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEEEEeCCEEeeeecCCCC
Q 030433 68 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEINRFPAFGF 146 (177)
Q Consensus 68 lV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii~~~G~~~~r~~g~~~ 146 (177)
+++|||+||++|+.+.|.++++. +.++.+|.+++.+++++|+|. ++||++ +|+.+.+..|...
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-------~~~~~vd~~~~~~l~~~~~v~------~~PT~~---~g~~~~~~~G~~~ 64 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-------YTYVDVDTDEGVELTAKHHIR------SLPTLV---NTSTLDRFTGVPR 64 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-------heEEeeeCCCCHHHHHHcCCc------eeCeEE---CCEEEEEEeCCCC
Confidence 68999999999999999997642 568899999999999999999 999987 7888888888743
No 69
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.49 E-value=2.7e-13 Score=96.95 Aligned_cols=78 Identities=12% Similarity=0.099 Sum_probs=63.1
Q ss_pred CCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEEC-----------------------CCCccHHHHhCCCc
Q 030433 63 TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDL-----------------------GLFPNAAEKFGISL 119 (177)
Q Consensus 63 ~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~-----------------------~~~~~~~~~~~v~~ 119 (177)
++++++|+||++||++|+.+.|.++++.++++ +.++.|+. +....+++.|++.
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~---~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~- 99 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR---VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVY- 99 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC---cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCC-
Confidence 35569999999999999999999999988763 66666663 3445677888998
Q ss_pred CCCCCCCCEEEEE-eCCEEeeeecCCCCCCc
Q 030433 120 GGSMGQLPTYILF-ENNAEINRFPAFGFEEK 149 (177)
Q Consensus 120 ~~~~~~~Ptlii~-~~G~~~~r~~g~~~~~~ 149 (177)
++|+.+++ ++|+++.+..|..+++.
T Consensus 100 -----~~P~~~~ld~~G~v~~~~~G~~~~~~ 125 (127)
T cd03010 100 -----GVPETFLIDGDGIIRYKHVGPLTPEV 125 (127)
T ss_pred -----CCCeEEEECCCceEEEEEeccCChHh
Confidence 99977777 79999999999877653
No 70
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.49 E-value=8.1e-14 Score=98.50 Aligned_cols=96 Identities=11% Similarity=0.138 Sum_probs=74.1
Q ss_pred eeecChhHHHHHHhcCCCCceEEEEEec--CCCh---hhHHHhHHHHHHHHHhCCCCcEEEEEEC-----CCCccHHHHh
Q 030433 46 SNKLTPLQLEALLTEGKTSRYWLVEFRA--QCSS---TCIRASRIFPELSIAYSNKNVSFGIVDL-----GLFPNAAEKF 115 (177)
Q Consensus 46 ~~~l~~~~~~~~l~~~~~~~~vlV~F~a--~wC~---~C~~~~p~l~~~~~~~~~~~~~~~~vd~-----~~~~~~~~~~ 115 (177)
+..++.++|++.+.+ ++. +||.||| +||+ +|+.+.|.+.+.+. .+.+.+||+ .++.+++++|
T Consensus 3 ~v~L~~~nF~~~v~~-~~~--vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~-----~v~lakVd~~d~~~~~~~~L~~~y 74 (116)
T cd03007 3 CVDLDTVTFYKVIPK-FKY--SLVKFDTAYPYGEKHEAFTRLAESSASATD-----DLLVAEVGIKDYGEKLNMELGERY 74 (116)
T ss_pred eeECChhhHHHHHhc-CCc--EEEEEeCCCCCCCChHHHHHHHHHHHhhcC-----ceEEEEEecccccchhhHHHHHHh
Confidence 467889999999988 665 9999999 9999 78887777755433 388999999 4677899999
Q ss_pred CCCcCCCCCCCCEEEEEeCCE--EeeeecCC-CCCCccccc
Q 030433 116 GISLGGSMGQLPTYILFENNA--EINRFPAF-GFEEKFSHP 153 (177)
Q Consensus 116 ~v~~~~~~~~~Ptlii~~~G~--~~~r~~g~-~~~~~~~~~ 153 (177)
+|+ ..++||+.+|++|. ....+.|. .+.+.+..|
T Consensus 75 ~I~----~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~ 111 (116)
T cd03007 75 KLD----KESYPVIYLFHGGDFENPVPYSGADVTVDALQRF 111 (116)
T ss_pred CCC----cCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHH
Confidence 996 12699999999985 44566675 555555544
No 71
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.48 E-value=2.2e-13 Score=98.33 Aligned_cols=74 Identities=12% Similarity=0.164 Sum_probs=59.8
Q ss_pred CCceEEEEEecCCChhhHHHhHHHHHHHHHhCCC--CcEEEEEECCCCc-------------------------cHHHHh
Q 030433 63 TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNK--NVSFGIVDLGLFP-------------------------NAAEKF 115 (177)
Q Consensus 63 ~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~--~~~~~~vd~~~~~-------------------------~~~~~~ 115 (177)
++++++|+||++||++|+.+.|.++++.+++++. ++.++.++.++.. .+++.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 3466999999999999999999999999988753 6888888876542 345668
Q ss_pred CCCcCCCCCCCCEEEEE-eCCEEeeeec
Q 030433 116 GISLGGSMGQLPTYILF-ENNAEINRFP 142 (177)
Q Consensus 116 ~v~~~~~~~~~Ptlii~-~~G~~~~r~~ 142 (177)
++. ++|+++++ ++|+++.+..
T Consensus 96 ~v~------~iPt~~lid~~G~iv~~~~ 117 (132)
T cd02964 96 KVE------GIPTLVVLKPDGDVVTTNA 117 (132)
T ss_pred CCC------CCCEEEEECCCCCEEchhH
Confidence 998 99999999 4788776544
No 72
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.47 E-value=2.8e-13 Score=97.45 Aligned_cols=73 Identities=14% Similarity=0.188 Sum_probs=59.4
Q ss_pred CCceEEEEEecCCChhhHHHhHHHHHHHHHhCCC--CcEEEEEECCCC------------------------ccHHHHhC
Q 030433 63 TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNK--NVSFGIVDLGLF------------------------PNAAEKFG 116 (177)
Q Consensus 63 ~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~--~~~~~~vd~~~~------------------------~~~~~~~~ 116 (177)
++++++|+||++||++|+.+.|.+.++.+++... ++.++.++.+.. ..++++|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 3456999999999999999999999998888643 677888877644 24567899
Q ss_pred CCcCCCCCCCCEEEEEe-CCEEeeee
Q 030433 117 ISLGGSMGQLPTYILFE-NNAEINRF 141 (177)
Q Consensus 117 v~~~~~~~~~Ptlii~~-~G~~~~r~ 141 (177)
+. ++|++++++ +|+.+.+.
T Consensus 97 v~------~~P~~~lid~~G~i~~~~ 116 (131)
T cd03009 97 IE------GIPTLIILDADGEVVTTD 116 (131)
T ss_pred CC------CCCEEEEECCCCCEEccc
Confidence 99 999999994 88877653
No 73
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.47 E-value=1.6e-13 Score=117.18 Aligned_cols=100 Identities=20% Similarity=0.282 Sum_probs=80.4
Q ss_pred cceeecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCC-C-CcEEEEEECCCCccHHHHhCCCcCC
Q 030433 44 GISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSN-K-NVSFGIVDLGLFPNAAEKFGISLGG 121 (177)
Q Consensus 44 ~~~~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~-~-~~~~~~vd~~~~~~~~~~~~v~~~~ 121 (177)
..+..+++++|++.+.++++. ++|+|||+||++|+.+.|.++++++.++. + ++.++++|++.+.... +++.
T Consensus 346 ~~v~~l~~~~f~~~v~~~~~~--vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~~~--~~i~--- 418 (462)
T TIGR01130 346 GPVKVLVGKNFDEIVLDETKD--VLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDVPP--FEVE--- 418 (462)
T ss_pred CccEEeeCcCHHHHhccCCCe--EEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCccCC--CCcc---
Confidence 357788899998887654544 99999999999999999999999999985 2 7999999998775444 8999
Q ss_pred CCCCCCEEEEEeCCEEe--eeecCCCCCCccccc
Q 030433 122 SMGQLPTYILFENNAEI--NRFPAFGFEEKFSHP 153 (177)
Q Consensus 122 ~~~~~Ptlii~~~G~~~--~r~~g~~~~~~~~~~ 153 (177)
++||+++|++|+.. .++.|..+.+.+..|
T Consensus 419 ---~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~ 449 (462)
T TIGR01130 419 ---GFPTIKFVPAGKKSEPVPYDGDRTLEDFSKF 449 (462)
T ss_pred ---ccCEEEEEeCCCCcCceEecCcCCHHHHHHH
Confidence 99999999888653 566676655554443
No 74
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.46 E-value=9.3e-13 Score=94.41 Aligned_cols=89 Identities=15% Similarity=0.096 Sum_probs=68.4
Q ss_pred hhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHH-H--HHHHHHhCCCCcEEEEEECCCCccHHHH--------hCCCc
Q 030433 51 PLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRI-F--PELSIAYSNKNVSFGIVDLGLFPNAAEK--------FGISL 119 (177)
Q Consensus 51 ~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~-l--~~~~~~~~~~~~~~~~vd~~~~~~~~~~--------~~v~~ 119 (177)
.+.++.+.++ ++ +++|+|+|+||++|+.+.+. + .++.+... +++.++++|.++.++++++ |++.
T Consensus 5 ~eal~~Ak~~-~K--pVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~-~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~- 79 (124)
T cd02955 5 EEAFEKARRE-DK--PIFLSIGYSTCHWCHVMEHESFEDEEVAAILN-ENFVPIKVDREERPDVDKIYMNAAQAMTGQG- 79 (124)
T ss_pred HHHHHHHHHc-CC--eEEEEEccCCCHhHHHHHHHccCCHHHHHHHh-CCEEEEEEeCCcCcHHHHHHHHHHHHhcCCC-
Confidence 4556655555 44 49999999999999999863 3 45666654 5799999999998888764 4788
Q ss_pred CCCCCCCCEEEEE-eCCEEeeeecCCCCCCc
Q 030433 120 GGSMGQLPTYILF-ENNAEINRFPAFGFEEK 149 (177)
Q Consensus 120 ~~~~~~~Ptlii~-~~G~~~~r~~g~~~~~~ 149 (177)
++|+++++ .+|+++.+..+.....+
T Consensus 80 -----G~Pt~vfl~~~G~~~~~~~~~~~~~~ 105 (124)
T cd02955 80 -----GWPLNVFLTPDLKPFFGGTYFPPEDR 105 (124)
T ss_pred -----CCCEEEEECCCCCEEeeeeecCCCCc
Confidence 99999999 67999987766655443
No 75
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.46 E-value=1.1e-12 Score=98.43 Aligned_cols=83 Identities=18% Similarity=0.285 Sum_probs=69.1
Q ss_pred CCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCC----------------------CccHHHHhCCCcC
Q 030433 63 TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL----------------------FPNAAEKFGISLG 120 (177)
Q Consensus 63 ~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~----------------------~~~~~~~~~v~~~ 120 (177)
++++++|+||++||++|+...|.+.++.+++++.++.++.++.+. ...+.++|++.
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~-- 137 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVG-- 137 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCC--
Confidence 345699999999999999999999999999987778999998753 35677899999
Q ss_pred CCCCCCCEEEEE-eCCEEeeeecCCCCCCccc
Q 030433 121 GSMGQLPTYILF-ENNAEINRFPAFGFEEKFS 151 (177)
Q Consensus 121 ~~~~~~Ptlii~-~~G~~~~r~~g~~~~~~~~ 151 (177)
++|+.+++ ++|+.+....|..+.+++.
T Consensus 138 ----~~P~~~lid~~g~i~~~~~g~~~~~~l~ 165 (173)
T PRK03147 138 ----PLPTTFLIDKDGKVVKVITGEMTEEQLE 165 (173)
T ss_pred ----CcCeEEEECCCCcEEEEEeCCCCHHHHH
Confidence 99999888 6899888888876655443
No 76
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.45 E-value=6.1e-13 Score=117.28 Aligned_cols=98 Identities=18% Similarity=0.321 Sum_probs=75.6
Q ss_pred eeec-ChhHHHHHHhcC-CCCceEEEEEecCCChhhHHHhHHH---HHHHHHhCCCCcEEEEEECCCC----ccHHHHhC
Q 030433 46 SNKL-TPLQLEALLTEG-KTSRYWLVEFRAQCSSTCIRASRIF---PELSIAYSNKNVSFGIVDLGLF----PNAAEKFG 116 (177)
Q Consensus 46 ~~~l-~~~~~~~~l~~~-~~~~~vlV~F~a~wC~~C~~~~p~l---~~~~~~~~~~~~~~~~vd~~~~----~~~~~~~~ 116 (177)
...+ +.+++++.+++. .++++++|+|||+||++|+.++|.. +++.++++ ++.++++|++++ .++.++|+
T Consensus 454 ~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~~~~~~~~l~~~~~ 531 (571)
T PRK00293 454 FQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTANNAEDVALLKHYN 531 (571)
T ss_pred ceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCCCChhhHHHHHHcC
Confidence 3444 357787776531 3456799999999999999998875 67777775 589999999864 57789999
Q ss_pred CCcCCCCCCCCEEEEEe-CCEEe--eeecCCCCCCccc
Q 030433 117 ISLGGSMGQLPTYILFE-NNAEI--NRFPAFGFEEKFS 151 (177)
Q Consensus 117 v~~~~~~~~~Ptlii~~-~G~~~--~r~~g~~~~~~~~ 151 (177)
+. ++||+++|+ +|+++ .|+.|..+.+++.
T Consensus 532 v~------g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~ 563 (571)
T PRK00293 532 VL------GLPTILFFDAQGQEIPDARVTGFMDAAAFA 563 (571)
T ss_pred CC------CCCEEEEECCCCCCcccccccCCCCHHHHH
Confidence 99 999999995 78884 6888876655443
No 77
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.45 E-value=6.9e-13 Score=90.07 Aligned_cols=66 Identities=26% Similarity=0.417 Sum_probs=54.5
Q ss_pred ceEEEEEecCCChhhHHHhHHHHHHHHHhC-CCCcEEEEEECCCC-------------------------ccHHHHhCCC
Q 030433 65 RYWLVEFRAQCSSTCIRASRIFPELSIAYS-NKNVSFGIVDLGLF-------------------------PNAAEKFGIS 118 (177)
Q Consensus 65 ~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~-~~~~~~~~vd~~~~-------------------------~~~~~~~~v~ 118 (177)
++++|+|||+||++|+.+.|.+.++.++|+ ++++.++.|+.++. ..+.+.|++.
T Consensus 2 K~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~ 81 (95)
T PF13905_consen 2 KPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGIN 81 (95)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-T
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCC
Confidence 679999999999999999999999999998 66799999998743 1466788999
Q ss_pred cCCCCCCCCEEEEE-eCCE
Q 030433 119 LGGSMGQLPTYILF-ENNA 136 (177)
Q Consensus 119 ~~~~~~~~Ptlii~-~~G~ 136 (177)
++|+++++ ++|+
T Consensus 82 ------~iP~~~lld~~G~ 94 (95)
T PF13905_consen 82 ------GIPTLVLLDPDGK 94 (95)
T ss_dssp ------SSSEEEEEETTSB
T ss_pred ------cCCEEEEECCCCC
Confidence 99999999 4565
No 78
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.44 E-value=3.4e-13 Score=88.60 Aligned_cols=62 Identities=10% Similarity=0.131 Sum_probs=53.3
Q ss_pred EEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEEEEeCCEEeeeecCC
Q 030433 69 VEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEINRFPAF 144 (177)
Q Consensus 69 V~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii~~~G~~~~r~~g~ 144 (177)
|.||++||++|+.+.|.++++.++++ ..+.++.+| +.+.+.+|++. ++||+++ ||+++ ..|.
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~-~~~~~~~v~---~~~~a~~~~v~------~vPti~i--~G~~~--~~G~ 64 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELG-IDAEFEKVT---DMNEILEAGVT------ATPGVAV--DGELV--IMGK 64 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcC-CCeEEEEeC---CHHHHHHcCCC------cCCEEEE--CCEEE--EEec
Confidence 78999999999999999999999997 458887777 34558889999 9999999 88877 6665
No 79
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.43 E-value=2e-12 Score=97.65 Aligned_cols=77 Identities=17% Similarity=0.132 Sum_probs=59.3
Q ss_pred CCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECC-----------------------CCccHHHHhCCCc
Q 030433 63 TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLG-----------------------LFPNAAEKFGISL 119 (177)
Q Consensus 63 ~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~-----------------------~~~~~~~~~~v~~ 119 (177)
++++++|+||++||++|+.+.|.++++.++ ++.++.++.+ ....+++.|++.
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~----~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~- 136 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD----GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVY- 136 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc----CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCe-
Confidence 356799999999999999999999888653 4666666643 233456677777
Q ss_pred CCCCCCCCEEEEE-eCCEEeeeecCCCCCCc
Q 030433 120 GGSMGQLPTYILF-ENNAEINRFPAFGFEEK 149 (177)
Q Consensus 120 ~~~~~~~Ptlii~-~~G~~~~r~~g~~~~~~ 149 (177)
++|+.+++ ++|+.+.++.|..+.++
T Consensus 137 -----~~P~~~~id~~G~i~~~~~G~~~~~~ 162 (173)
T TIGR00385 137 -----GAPETFLVDGNGVILYRHAGPLNNEV 162 (173)
T ss_pred -----eCCeEEEEcCCceEEEEEeccCCHHH
Confidence 99977777 78999999999766553
No 80
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.41 E-value=1.9e-12 Score=92.64 Aligned_cols=76 Identities=13% Similarity=0.163 Sum_probs=62.9
Q ss_pred CCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECC---------------------------CCccHHHHh
Q 030433 63 TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLG---------------------------LFPNAAEKF 115 (177)
Q Consensus 63 ~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~---------------------------~~~~~~~~~ 115 (177)
++++++|+||++||++|+...|.++++.+++++.++.++.++.+ ....+.+.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 34569999999999999999999999999999878999888642 112345567
Q ss_pred CCCcCCCCCCCCEEEEE-eCCEEeeeecCC
Q 030433 116 GISLGGSMGQLPTYILF-ENNAEINRFPAF 144 (177)
Q Consensus 116 ~v~~~~~~~~~Ptlii~-~~G~~~~r~~g~ 144 (177)
++. ++|+.+++ ++|+.+.++.|.
T Consensus 102 ~v~------~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 102 GNQ------YWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCC------cCCeEEEECCCCcEEEEEecC
Confidence 777 99999999 689999998885
No 81
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.40 E-value=1.3e-12 Score=105.35 Aligned_cols=80 Identities=13% Similarity=0.115 Sum_probs=63.7
Q ss_pred CCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCC-----------CccHHHHhCCCcCCCCCCCCEEE
Q 030433 62 KTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL-----------FPNAAEKFGISLGGSMGQLPTYI 130 (177)
Q Consensus 62 ~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~-----------~~~~~~~~~v~~~~~~~~~Ptli 130 (177)
-.+++++|+||++||++|+.+.|.+++++++|+ +.++.|+++. +..++++++|. ++|+++
T Consensus 164 l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg---~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~------~vPtl~ 234 (271)
T TIGR02740 164 LAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG---IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIR------TVPAVF 234 (271)
T ss_pred hcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC---cEEEEEeCCCCccccCCcccCCHHHHHHcCCC------cCCeEE
Confidence 445679999999999999999999999999986 7777777764 34688999999 999999
Q ss_pred EEeC-CEEeee-ecCCCCCCcc
Q 030433 131 LFEN-NAEINR-FPAFGFEEKF 150 (177)
Q Consensus 131 i~~~-G~~~~r-~~g~~~~~~~ 150 (177)
++++ |+.+.. ..|..+.+++
T Consensus 235 Lv~~~~~~v~~v~~G~~s~~eL 256 (271)
T TIGR02740 235 LADPDPNQFTPIGFGVMSADEL 256 (271)
T ss_pred EEECCCCEEEEEEeCCCCHHHH
Confidence 9975 555544 4476655543
No 82
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.40 E-value=1.2e-12 Score=100.02 Aligned_cols=78 Identities=14% Similarity=0.088 Sum_probs=61.2
Q ss_pred CCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCc-----------------------cHHHHhCCCc
Q 030433 63 TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP-----------------------NAAEKFGISL 119 (177)
Q Consensus 63 ~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~-----------------------~~~~~~~v~~ 119 (177)
++++++|+||++||++|+.+.|.++++.+ +++.++.|+.+... .+.+.|++.
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~- 141 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSA----QGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVY- 141 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHH----cCCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCC-
Confidence 45679999999999999999999988864 35888888865432 234466777
Q ss_pred CCCCCCCCEEEEE-eCCEEeeeecCCCCCCcc
Q 030433 120 GGSMGQLPTYILF-ENNAEINRFPAFGFEEKF 150 (177)
Q Consensus 120 ~~~~~~~Ptlii~-~~G~~~~r~~g~~~~~~~ 150 (177)
++|+.+++ ++|+...++.|..+++++
T Consensus 142 -----~~P~t~vid~~G~i~~~~~G~~~~~~l 168 (185)
T PRK15412 142 -----GAPETFLIDGNGIIRYRHAGDLNPRVW 168 (185)
T ss_pred -----cCCeEEEECCCceEEEEEecCCCHHHH
Confidence 99987777 699999999998766543
No 83
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.40 E-value=5.3e-13 Score=91.81 Aligned_cols=70 Identities=21% Similarity=0.272 Sum_probs=62.1
Q ss_pred ceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEEEEeC--CEEee
Q 030433 65 RYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFEN--NAEIN 139 (177)
Q Consensus 65 ~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii~~~--G~~~~ 139 (177)
+++++.|+++||++|+.+.|.++++++++. .++.|+.+|.++++.+++.+++.. .++|+++++++ |+...
T Consensus 13 ~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~-~~v~f~~vd~~~~~~~~~~~~i~~----~~~P~~~~~~~~~~~k~~ 84 (103)
T cd02982 13 KPLLVLFYNKDDSESEELRERFKEVAKKFK-GKLLFVVVDADDFGRHLEYFGLKE----EDLPVIAIINLSDGKKYL 84 (103)
T ss_pred CCEEEEEEcCChhhHHHHHHHHHHHHHHhC-CeEEEEEEchHhhHHHHHHcCCCh----hhCCEEEEEecccccccC
Confidence 459999999999999999999999999998 569999999999999999999961 26999999988 65544
No 84
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.39 E-value=1.6e-12 Score=101.54 Aligned_cols=76 Identities=20% Similarity=0.286 Sum_probs=64.9
Q ss_pred EEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEEEEeCCEEeeeecCCCC
Q 030433 67 WLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEINRFPAFGF 146 (177)
Q Consensus 67 vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii~~~G~~~~r~~g~~~ 146 (177)
.++.||++||++|+.+.|.+++++.++ +++.+..+|.+++++++++|+|. ++||++++++|+. +.|..+
T Consensus 136 ~I~~F~a~~C~~C~~~~~~l~~l~~~~--~~i~~~~vD~~~~~~~~~~~~V~------~vPtl~i~~~~~~---~~G~~~ 204 (215)
T TIGR02187 136 RIEVFVTPTCPYCPYAVLMAHKFALAN--DKILGEMIEANENPDLAEKYGVM------SVPKIVINKGVEE---FVGAYP 204 (215)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhc--CceEEEEEeCCCCHHHHHHhCCc------cCCEEEEecCCEE---EECCCC
Confidence 455599999999999999999998875 46999999999999999999999 9999999988874 778776
Q ss_pred CCccccc
Q 030433 147 EEKFSHP 153 (177)
Q Consensus 147 ~~~~~~~ 153 (177)
.+++..+
T Consensus 205 ~~~l~~~ 211 (215)
T TIGR02187 205 EEQFLEY 211 (215)
T ss_pred HHHHHHH
Confidence 6555443
No 85
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.39 E-value=3.3e-13 Score=108.14 Aligned_cols=96 Identities=21% Similarity=0.289 Sum_probs=79.8
Q ss_pred ChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHH----hCCCCcEEEEEECCCCccHHHHhCCCcCCCCCC
Q 030433 50 TPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIA----YSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQ 125 (177)
Q Consensus 50 ~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~----~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~ 125 (177)
+.++++..+.. +.- ++|.|||+||+-++.++|.+++.++. ++..++.+++||+++...++++|.|. .
T Consensus 2 t~~N~~~il~s-~el--vfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~------K 72 (375)
T KOG0912|consen 2 TSENIDSILDS-NEL--VFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHIN------K 72 (375)
T ss_pred ccccHHHhhcc-ceE--EeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccc------c
Confidence 45667777777 444 99999999999999999999887765 45567999999999999999999999 9
Q ss_pred CCEEEEEeCCEEee-eecCCCCCCcccccc
Q 030433 126 LPTYILFENNAEIN-RFPAFGFEEKFSHPH 154 (177)
Q Consensus 126 ~Ptlii~~~G~~~~-r~~g~~~~~~~~~~~ 154 (177)
+||+.+|+||.+.. .+-|..+.+.+..+.
T Consensus 73 yPTlKvfrnG~~~~rEYRg~RsVeaL~efi 102 (375)
T KOG0912|consen 73 YPTLKVFRNGEMMKREYRGQRSVEALIEFI 102 (375)
T ss_pred CceeeeeeccchhhhhhccchhHHHHHHHH
Confidence 99999999999888 455666666665543
No 86
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.39 E-value=4.6e-12 Score=87.25 Aligned_cols=74 Identities=22% Similarity=0.284 Sum_probs=65.8
Q ss_pred CceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCC-----------------------ccHHHHhCCCcC
Q 030433 64 SRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF-----------------------PNAAEKFGISLG 120 (177)
Q Consensus 64 ~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~-----------------------~~~~~~~~v~~~ 120 (177)
++++++.||++||++|+...+.+.++.+++..+++.++.++.+.. ..+.+.|++.
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 96 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVR-- 96 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcC--
Confidence 456999999999999999999999999999767799999999876 7788999999
Q ss_pred CCCCCCCEEEEE-eCCEEeeeecC
Q 030433 121 GSMGQLPTYILF-ENNAEINRFPA 143 (177)
Q Consensus 121 ~~~~~~Ptlii~-~~G~~~~r~~g 143 (177)
++|+++++ ++|+.+.++.|
T Consensus 97 ----~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 97 ----GLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred ----ccceEEEECCCCcEEEEecC
Confidence 99999999 58988887765
No 87
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.38 E-value=3.2e-13 Score=94.35 Aligned_cols=83 Identities=13% Similarity=0.249 Sum_probs=61.8
Q ss_pred CCCceEEEEEecCCChhhHHHhHHHHHH---HHHhCCCCcEEEEEECCCC--------------------ccHHHHhCCC
Q 030433 62 KTSRYWLVEFRAQCSSTCIRASRIFPEL---SIAYSNKNVSFGIVDLGLF--------------------PNAAEKFGIS 118 (177)
Q Consensus 62 ~~~~~vlV~F~a~wC~~C~~~~p~l~~~---~~~~~~~~~~~~~vd~~~~--------------------~~~~~~~~v~ 118 (177)
+++++++++||++||+.|+.+.+.+.+. ...+. .++.++.++++.. .+++++++|+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 81 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLK-DDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVN 81 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEH-CECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhh-cCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCC
Confidence 4567799999999999999999988753 44443 4688888888743 3578899999
Q ss_pred cCCCCCCCCEEEEE-eCCEEeeeecCCCCCCccc
Q 030433 119 LGGSMGQLPTYILF-ENNAEINRFPAFGFEEKFS 151 (177)
Q Consensus 119 ~~~~~~~~Ptlii~-~~G~~~~r~~g~~~~~~~~ 151 (177)
++||++++ ++|+.+.++.|..+.+++.
T Consensus 82 ------gtPt~~~~d~~G~~v~~~~G~~~~~~l~ 109 (112)
T PF13098_consen 82 ------GTPTIVFLDKDGKIVYRIPGYLSPEELL 109 (112)
T ss_dssp ------SSSEEEECTTTSCEEEEEESS--HHHHH
T ss_pred ------ccCEEEEEcCCCCEEEEecCCCCHHHHH
Confidence 99999999 4899999999998766554
No 88
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.35 E-value=2e-12 Score=120.80 Aligned_cols=84 Identities=15% Similarity=0.260 Sum_probs=69.5
Q ss_pred CCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEEC---C------------------------CCccHHHHh
Q 030433 63 TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDL---G------------------------LFPNAAEKF 115 (177)
Q Consensus 63 ~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~---~------------------------~~~~~~~~~ 115 (177)
++++++|+|||+||++|+.+.|.+++++++|+++++.++.|.. + ....+.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 4567999999999999999999999999999877788888742 1 133466788
Q ss_pred CCCcCCCCCCCCEEEEE-eCCEEeeeecCCCCCCcccc
Q 030433 116 GISLGGSMGQLPTYILF-ENNAEINRFPAFGFEEKFSH 152 (177)
Q Consensus 116 ~v~~~~~~~~~Ptlii~-~~G~~~~r~~g~~~~~~~~~ 152 (177)
++. ++|+++++ ++|+++.++.|....+.+..
T Consensus 499 ~V~------~iPt~ilid~~G~iv~~~~G~~~~~~l~~ 530 (1057)
T PLN02919 499 GVS------SWPTFAVVSPNGKLIAQLSGEGHRKDLDD 530 (1057)
T ss_pred CCC------ccceEEEECCCCeEEEEEecccCHHHHHH
Confidence 998 99999999 79999999999876654443
No 89
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.34 E-value=7.1e-12 Score=79.86 Aligned_cols=60 Identities=20% Similarity=0.424 Sum_probs=53.1
Q ss_pred EEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEEEEeCCEE
Q 030433 68 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAE 137 (177)
Q Consensus 68 lV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii~~~G~~ 137 (177)
+..|+++||++|+.+.+.++++++.+ +++.+..+|+++++++++++++. ++||+++ +|+.
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~--~~i~~~~id~~~~~~l~~~~~i~------~vPti~i--~~~~ 62 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALN--PNISAEMIDAAEFPDLADEYGVM------SVPAIVI--NGKV 62 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhC--CceEEEEEEcccCHhHHHHcCCc------ccCEEEE--CCEE
Confidence 67899999999999999999998765 46999999999999999999999 9999865 5653
No 90
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.31 E-value=6.7e-12 Score=88.95 Aligned_cols=77 Identities=17% Similarity=0.153 Sum_probs=59.1
Q ss_pred ceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEE---------------------CCCCccHHHHhCCCcCCCC
Q 030433 65 RYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVD---------------------LGLFPNAAEKFGISLGGSM 123 (177)
Q Consensus 65 ~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd---------------------~~~~~~~~~~~~v~~~~~~ 123 (177)
++++|+||++||++|+.+.|.+.++.+++. +..+.+| .+.+..++++|++.
T Consensus 21 k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~----- 92 (123)
T cd03011 21 KPVLVYFWATWCPVCRFTSPTVNQLAADYP---VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVS----- 92 (123)
T ss_pred CEEEEEEECCcChhhhhhChHHHHHHhhCC---EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCC-----
Confidence 559999999999999999999998887643 2222221 13456788999999
Q ss_pred CCCCEEEEEeCCEEeeeecCCCCCCcc
Q 030433 124 GQLPTYILFENNAEINRFPAFGFEEKF 150 (177)
Q Consensus 124 ~~~Ptlii~~~G~~~~r~~g~~~~~~~ 150 (177)
++|+++++++|+...+..|..+++.+
T Consensus 93 -~~P~~~vid~~gi~~~~~g~~~~~~~ 118 (123)
T cd03011 93 -VTPAIVIVDPGGIVFVTTGVTSEWGL 118 (123)
T ss_pred -cccEEEEEcCCCeEEEEeccCCHHHH
Confidence 99999999655588888888766544
No 91
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.29 E-value=5.2e-12 Score=97.59 Aligned_cols=112 Identities=11% Similarity=0.074 Sum_probs=73.1
Q ss_pred CCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCC-------C----ccHHHHhCCCcCC----------
Q 030433 63 TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL-------F----PNAAEKFGISLGG---------- 121 (177)
Q Consensus 63 ~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~-------~----~~~~~~~~v~~~~---------- 121 (177)
++++++|+|||+||++|+...|.++++.++|++.++.++.+++++ . ....+++++....
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~ 117 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGEN 117 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCc
Confidence 356799999999999999999999999999998889999998642 1 1223444432110
Q ss_pred --------------------CCCCCC---EEEEE-eCCEEeeeecCCCCCCcccc---cccchHhHhhhc-cchhHhHhh
Q 030433 122 --------------------SMGQLP---TYILF-ENNAEINRFPAFGFEEKFSH---PHITKKLIAHHF-QLDRLRIES 173 (177)
Q Consensus 122 --------------------~~~~~P---tlii~-~~G~~~~r~~g~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~ 173 (177)
...++| +.+++ ++|+++.++.|..+.+.+.. -.+.+++-+..| +.|+++++|
T Consensus 118 ~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~~~~~~~~~~~~~~~~~~~ 197 (199)
T PTZ00056 118 THELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLGVKDYQELFKNYDKLHPES 197 (199)
T ss_pred cCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcCccc
Confidence 011333 45555 89999999999876654432 223333333322 456666655
Q ss_pred h
Q 030433 174 V 174 (177)
Q Consensus 174 ~ 174 (177)
.
T Consensus 198 ~ 198 (199)
T PTZ00056 198 I 198 (199)
T ss_pred C
Confidence 3
No 92
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.28 E-value=2.7e-11 Score=84.76 Aligned_cols=70 Identities=16% Similarity=0.226 Sum_probs=50.7
Q ss_pred CceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECC---CC-----------------ccHHHHhCCCcCCCC
Q 030433 64 SRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLG---LF-----------------PNAAEKFGISLGGSM 123 (177)
Q Consensus 64 ~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~---~~-----------------~~~~~~~~v~~~~~~ 123 (177)
+++++|+||++||++|+.+.|.++++.+++. .++.++.+.-+ +. ..+.++|++.
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~-~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~----- 94 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEA-DWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVS----- 94 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhc-CCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCC-----
Confidence 4569999999999999999999999988876 45777666211 11 1234455555
Q ss_pred CCCCEEEEE-eCCEEeee
Q 030433 124 GQLPTYILF-ENNAEINR 140 (177)
Q Consensus 124 ~~~Ptlii~-~~G~~~~r 140 (177)
++|+.+++ ++|+...+
T Consensus 95 -~~P~~~vid~~G~v~~~ 111 (114)
T cd02967 95 -KLPYAVLLDEAGVIAAK 111 (114)
T ss_pred -CcCeEEEECCCCeEEec
Confidence 78888888 46776553
No 93
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.28 E-value=4.3e-11 Score=86.17 Aligned_cols=94 Identities=6% Similarity=0.009 Sum_probs=63.2
Q ss_pred CCceEEEEEecCCChhhHHHhHHH---HHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEEEE-eCCEEe
Q 030433 63 TSRYWLVEFRAQCSSTCIRASRIF---PELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILF-ENNAEI 138 (177)
Q Consensus 63 ~~~~vlV~F~a~wC~~C~~~~p~l---~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii~-~~G~~~ 138 (177)
++++++|+|+++||++|+.+...+ .++.+..+ +++..+.++.+....-....+ . ++||++++ .+|+++
T Consensus 22 ~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~-~~Fv~V~l~~d~td~~~~~~g-~------~vPtivFld~~g~vi 93 (130)
T cd02960 22 SNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQ-EDFIMLNLVHETTDKNLSPDG-Q------YVPRIMFVDPSLTVR 93 (130)
T ss_pred CCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHH-hCeEEEEEEeccCCCCcCccC-c------ccCeEEEECCCCCCc
Confidence 355699999999999999998764 34444443 456666676552211111122 4 89999999 789999
Q ss_pred eeecCCCCCCcccccccchHhHhhhc
Q 030433 139 NRFPAFGFEEKFSHPHITKKLIAHHF 164 (177)
Q Consensus 139 ~r~~g~~~~~~~~~~~~~~~~~~~~~ 164 (177)
.++.|+.+..........-+.+.+.+
T Consensus 94 ~~i~Gy~~~~~~~y~~~~~~~~~~~m 119 (130)
T cd02960 94 ADITGRYSNRLYTYEPADIPLLIENM 119 (130)
T ss_pred ccccccccCccceeCcCcHHHHHHHH
Confidence 99999998887665544333444433
No 94
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.26 E-value=4.4e-11 Score=80.93 Aligned_cols=67 Identities=16% Similarity=0.277 Sum_probs=59.4
Q ss_pred EEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEEEEeCCEEeeeecCCC
Q 030433 67 WLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEINRFPAFG 145 (177)
Q Consensus 67 vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii~~~G~~~~r~~g~~ 145 (177)
-+..|+++||++|....+.+++++++++ ++++..+|.++.++.+++|+|. ++||+++ ||+.+.+ |..
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~--~i~~~~vd~~~~~e~a~~~~V~------~vPt~vi--dG~~~~~--G~~ 81 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNP--NIEHEMIDGALFQDEVEERGIM------SVPAIFL--NGELFGF--GRM 81 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCC--CceEEEEEhHhCHHHHHHcCCc------cCCEEEE--CCEEEEe--CCC
Confidence 5888999999999999999999998874 5999999999999999999999 9999975 8887664 543
No 95
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.26 E-value=7.6e-12 Score=107.50 Aligned_cols=90 Identities=18% Similarity=0.215 Sum_probs=76.2
Q ss_pred CcccCCcceeecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCC--CCcEEEEEECC--CCccHHH
Q 030433 38 PVFQKLGISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSN--KNVSFGIVDLG--LFPNAAE 113 (177)
Q Consensus 38 ~~~~~~~~~~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~--~~~~~~~vd~~--~~~~~~~ 113 (177)
+.+....++..++.++|++.+..+.+. .+|.||++|||+|+.+.|.++++++.... +=+.+..||+. +|..+|+
T Consensus 33 tLy~~~D~ii~Ld~~tf~~~v~~~~~~--~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCR 110 (606)
T KOG1731|consen 33 TLYSPDDPIIELDVDTFNAAVFGSRKA--KLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCR 110 (606)
T ss_pred cccCCCCCeEEeehhhhHHHhcccchh--HHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHh
Confidence 346666789999999999998874545 99999999999999999999999987652 34777888885 6778999
Q ss_pred HhCCCcCCCCCCCCEEEEEeCC
Q 030433 114 KFGISLGGSMGQLPTYILFENN 135 (177)
Q Consensus 114 ~~~v~~~~~~~~~Ptlii~~~G 135 (177)
+|+|. ++|++.+|..+
T Consensus 111 ef~V~------~~Ptlryf~~~ 126 (606)
T KOG1731|consen 111 EFSVS------GYPTLRYFPPD 126 (606)
T ss_pred hcCCC------CCceeeecCCc
Confidence 99999 99999999654
No 96
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.24 E-value=7.8e-11 Score=86.03 Aligned_cols=85 Identities=19% Similarity=0.167 Sum_probs=67.0
Q ss_pred CCCceEEEEEecC-CChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCC---------------------ccHHHHhCCC-
Q 030433 62 KTSRYWLVEFRAQ-CSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF---------------------PNAAEKFGIS- 118 (177)
Q Consensus 62 ~~~~~vlV~F~a~-wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~---------------------~~~~~~~~v~- 118 (177)
-++++++|+||++ |||+|+...|.+.++.+.|+++++.++.+..+.. ..+.++|++.
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 105 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI 105 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence 4456699999999 9999999999999999998888899988886543 3456667754
Q ss_pred -cCCCC-CCCCEEEEE-eCCEEeeeecCCCC
Q 030433 119 -LGGSM-GQLPTYILF-ENNAEINRFPAFGF 146 (177)
Q Consensus 119 -~~~~~-~~~Ptlii~-~~G~~~~r~~g~~~ 146 (177)
..... .++|+++++ ++|+++.+..|..+
T Consensus 106 ~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 106 MEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp ECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred ccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 11111 279998887 88999999999876
No 97
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.24 E-value=4.1e-11 Score=91.26 Aligned_cols=79 Identities=8% Similarity=-0.007 Sum_probs=59.4
Q ss_pred CCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEE------EEEECCC----------------------------
Q 030433 62 KTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSF------GIVDLGL---------------------------- 107 (177)
Q Consensus 62 ~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~------~~vd~~~---------------------------- 107 (177)
-++++.+|+|||+||++|+...|.++++.++ ++.+ ..||.++
T Consensus 57 l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~----~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD 132 (184)
T TIGR01626 57 LAGKVRVVHHIAGRTSAKEXNASLIDAIKAA----KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLD 132 (184)
T ss_pred cCCCEEEEEEEecCCChhhccchHHHHHHHc----CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEEC
Confidence 3466699999999999999999999999552 3444 5555543
Q ss_pred -CccHHHHhCCCcCCCCCCCCEE-EEE-eCCEEeeeecCCCCCCcc
Q 030433 108 -FPNAAEKFGISLGGSMGQLPTY-ILF-ENNAEINRFPAFGFEEKF 150 (177)
Q Consensus 108 -~~~~~~~~~v~~~~~~~~~Ptl-ii~-~~G~~~~r~~g~~~~~~~ 150 (177)
....+.+|++. ++|+. +++ ++|+...++.|..+.+++
T Consensus 133 ~~g~v~~~~gv~------~~P~T~fVIDk~GkVv~~~~G~l~~ee~ 172 (184)
T TIGR01626 133 DKGAVKNAWQLN------SEDSAIIVLDKTGKVKFVKEGALSDSDI 172 (184)
T ss_pred CcchHHHhcCCC------CCCceEEEECCCCcEEEEEeCCCCHHHH
Confidence 23455677887 99877 566 889999999998765543
No 98
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.24 E-value=3.2e-11 Score=104.42 Aligned_cols=99 Identities=19% Similarity=0.370 Sum_probs=78.7
Q ss_pred eecChh-HHHHHHhcCCCCceEEEEEecCCChhhHHHhHHH-HHHHHHhCCCCcEEEEEECCCCc----cHHHHhCCCcC
Q 030433 47 NKLTPL-QLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIF-PELSIAYSNKNVSFGIVDLGLFP----NAAEKFGISLG 120 (177)
Q Consensus 47 ~~l~~~-~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l-~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~v~~~ 120 (177)
..++.. ++++.+.+ ++.+||+++|||+||-.||.+++.. .+.....+-.++...++|++++. ++-+++++-
T Consensus 457 q~~s~~~~L~~~la~-~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~-- 533 (569)
T COG4232 457 QPISPLAELDQALAE-AKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVF-- 533 (569)
T ss_pred hccCCHHHHHHHHHh-CCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCC--
Confidence 555655 88888888 7767899999999999999998765 24444444467999999999775 457789999
Q ss_pred CCCCCCCEEEEEe-CCEEeeeecCCCCCCcccc
Q 030433 121 GSMGQLPTYILFE-NNAEINRFPAFGFEEKFSH 152 (177)
Q Consensus 121 ~~~~~~Ptlii~~-~G~~~~r~~g~~~~~~~~~ 152 (177)
+.|++++|. +|++.....|..+++.+.+
T Consensus 534 ----G~P~~~ff~~~g~e~~~l~gf~~a~~~~~ 562 (569)
T COG4232 534 ----GVPTYLFFGPQGSEPEILTGFLTADAFLE 562 (569)
T ss_pred ----CCCEEEEECCCCCcCcCCcceecHHHHHH
Confidence 999999995 8888888888877765544
No 99
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.23 E-value=4.1e-11 Score=90.86 Aligned_cols=74 Identities=19% Similarity=0.125 Sum_probs=58.6
Q ss_pred EEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCC-------------ccHHHHhCC--CcCCCCCCCCEEEEE
Q 030433 68 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF-------------PNAAEKFGI--SLGGSMGQLPTYILF 132 (177)
Q Consensus 68 lV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~-------------~~~~~~~~v--~~~~~~~~~Ptlii~ 132 (177)
+|+||++||++|+++.|.+++++++|+ +.++.++++.. ..+.+.|++ . ++|+.+++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g---~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~------~iPttfLI 143 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG---FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPV------ATPTTFLV 143 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC---CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCC------CCCeEEEE
Confidence 778999999999999999999999985 77877777643 124556774 5 89999999
Q ss_pred -eCCEEe-eeecCCCCCCcc
Q 030433 133 -ENNAEI-NRFPAFGFEEKF 150 (177)
Q Consensus 133 -~~G~~~-~r~~g~~~~~~~ 150 (177)
++|+.. ..+.|..+.+++
T Consensus 144 d~~G~i~~~~~~G~~~~~~L 163 (181)
T PRK13728 144 NVNTLEALPLLQGATDAAGF 163 (181)
T ss_pred eCCCcEEEEEEECCCCHHHH
Confidence 788886 468898765543
No 100
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.7e-11 Score=103.40 Aligned_cols=99 Identities=25% Similarity=0.406 Sum_probs=78.1
Q ss_pred eecChhHHHHH-HhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCC
Q 030433 47 NKLTPLQLEAL-LTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQ 125 (177)
Q Consensus 47 ~~l~~~~~~~~-l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~ 125 (177)
..++...+... +.. +.. ++|.||++||++|+.+.|.+.+++..+.. .+.+..||++.+.+++++|+|+ +
T Consensus 32 ~~~~~~~~~~~~~~~-~~~--~~v~fyapwc~~c~~l~~~~~~~~~~l~~-~~~~~~vd~~~~~~~~~~y~i~------g 101 (383)
T KOG0191|consen 32 SELTLDSFFDFLLKD-DSP--WLVEFYAPWCGHCKKLAPTYKKLAKALKG-KVKIGAVDCDEHKDLCEKYGIQ------G 101 (383)
T ss_pred hhhhccccHHHhhcc-CCc--eEEEEECCCCcchhhhchHHHHHHHHhcC-ceEEEEeCchhhHHHHHhcCCc------c
Confidence 33444445433 444 555 99999999999999999999999999874 7999999999999999999999 9
Q ss_pred CCEEEEEeCCEEeeeecCCCCCCccccccc
Q 030433 126 LPTYILFENNAEINRFPAFGFEEKFSHPHI 155 (177)
Q Consensus 126 ~Ptlii~~~G~~~~r~~g~~~~~~~~~~~~ 155 (177)
+||+.+|.+|.....+.|....+.+..+..
T Consensus 102 fPtl~~f~~~~~~~~~~~~~~~~~~~~~~~ 131 (383)
T KOG0191|consen 102 FPTLKVFRPGKKPIDYSGPRNAESLAEFLI 131 (383)
T ss_pred CcEEEEEcCCCceeeccCcccHHHHHHHHH
Confidence 999999999955555666555555554433
No 101
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.18 E-value=1.3e-10 Score=83.73 Aligned_cols=98 Identities=13% Similarity=0.200 Sum_probs=79.8
Q ss_pred eecChhHHHHHHhcCCCCceEEEEEec--CCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCC
Q 030433 47 NKLTPLQLEALLTEGKTSRYWLVEFRA--QCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMG 124 (177)
Q Consensus 47 ~~l~~~~~~~~l~~~~~~~~vlV~F~a--~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~ 124 (177)
..++..++++.+.. ... .++.|-+ .-++.+....-.+++++++|++.++++++||+++++.++.+|+|.
T Consensus 20 ~~~~~~~~~~~~~~-~~~--~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~------ 90 (132)
T PRK11509 20 TPVSESRLDDWLTQ-APD--GVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVF------ 90 (132)
T ss_pred CccccccHHHHHhC-CCc--EEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCc------
Confidence 44555777777776 543 4454443 456888888889999999997556999999999999999999999
Q ss_pred CCCEEEEEeCCEEeeeecCCCCCCccccc
Q 030433 125 QLPTYILFENNAEINRFPAFGFEEKFSHP 153 (177)
Q Consensus 125 ~~Ptlii~~~G~~~~r~~g~~~~~~~~~~ 153 (177)
++||+++|+||+.++++.|..+.+++.++
T Consensus 91 siPTLl~FkdGk~v~~i~G~~~k~~l~~~ 119 (132)
T PRK11509 91 RFPATLVFTGGNYRGVLNGIHPWAELINL 119 (132)
T ss_pred cCCEEEEEECCEEEEEEeCcCCHHHHHHH
Confidence 99999999999999999999887766554
No 102
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.15 E-value=2.3e-10 Score=80.53 Aligned_cols=82 Identities=10% Similarity=0.127 Sum_probs=66.2
Q ss_pred CCceEEEEEecCCChhhHHHhHH-H--HHHHHHhCCCCcEEEEEECCC--CccHHHHhCCCcCCCCCCCCEEEEEe--CC
Q 030433 63 TSRYWLVEFRAQCSSTCIRASRI-F--PELSIAYSNKNVSFGIVDLGL--FPNAAEKFGISLGGSMGQLPTYILFE--NN 135 (177)
Q Consensus 63 ~~~~vlV~F~a~wC~~C~~~~p~-l--~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~~~~~~~Ptlii~~--~G 135 (177)
++++++|+|+++||++|+.+... | +++.+.++ +++.+..+|.+. ...+++.|++. ++|+++++. +|
T Consensus 16 ~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~-~~~v~~~~d~~~~e~~~~~~~~~~~------~~P~~~~i~~~~g 88 (114)
T cd02958 16 EKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIR-ENFIFWQCDIDSSEGQRFLQSYKVD------KYPHIAIIDPRTG 88 (114)
T ss_pred hCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHH-hCEEEEEecCCCccHHHHHHHhCcc------CCCeEEEEeCccC
Confidence 35669999999999999999764 4 55666665 568888888874 45678899999 999999994 69
Q ss_pred EEeeeecCCCCCCccc
Q 030433 136 AEINRFPAFGFEEKFS 151 (177)
Q Consensus 136 ~~~~r~~g~~~~~~~~ 151 (177)
+.+.++.|..+.+++.
T Consensus 89 ~~l~~~~G~~~~~~f~ 104 (114)
T cd02958 89 EVLKVWSGNITPEDLL 104 (114)
T ss_pred cEeEEEcCCCCHHHHH
Confidence 9999999998766544
No 103
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.14 E-value=1.3e-09 Score=83.43 Aligned_cols=69 Identities=16% Similarity=0.257 Sum_probs=52.1
Q ss_pred CCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECC--------------------CCccHHHHhCCCcCCC
Q 030433 63 TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLG--------------------LFPNAAEKFGISLGGS 122 (177)
Q Consensus 63 ~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~--------------------~~~~~~~~~~v~~~~~ 122 (177)
++++++|+||++||++|+.+.|.+.++.+++. ..++.++.+ ...++.+.|++.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~---~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~---- 145 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE---TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVG---- 145 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcC---CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCC----
Confidence 45679999999999999999999999887653 444444321 123566778888
Q ss_pred CCCCCEEEEE-eCCEEeee
Q 030433 123 MGQLPTYILF-ENNAEINR 140 (177)
Q Consensus 123 ~~~~Ptlii~-~~G~~~~r 140 (177)
++|+.+++ ++|+...+
T Consensus 146 --~~P~~~lID~~G~I~~~ 162 (189)
T TIGR02661 146 --KIPYGVLLDQDGKIRAK 162 (189)
T ss_pred --ccceEEEECCCCeEEEc
Confidence 99998887 68988764
No 104
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.13 E-value=1.7e-10 Score=85.22 Aligned_cols=87 Identities=14% Similarity=0.140 Sum_probs=61.9
Q ss_pred CCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCC-------C----ccHHHH-hCCCcCC-------C-
Q 030433 63 TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL-------F----PNAAEK-FGISLGG-------S- 122 (177)
Q Consensus 63 ~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~-------~----~~~~~~-~~v~~~~-------~- 122 (177)
++++++|+|||+||+ |+...|.++++.++|.+.++.++.++.+. . ...+++ +++.... .
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~~ 99 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGE 99 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccCC
Confidence 356699999999999 99999999999999987889999997642 1 122332 3322100 0
Q ss_pred ---------CCCCC-----------EEEEE-eCCEEeeeecCCCCCCcc
Q 030433 123 ---------MGQLP-----------TYILF-ENNAEINRFPAFGFEEKF 150 (177)
Q Consensus 123 ---------~~~~P-----------tlii~-~~G~~~~r~~g~~~~~~~ 150 (177)
..++| |.+++ ++|+.+.++.|..+.+.+
T Consensus 100 ~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l 148 (152)
T cd00340 100 NAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEEL 148 (152)
T ss_pred CCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHH
Confidence 12466 56666 899999999998765543
No 105
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.11 E-value=2.3e-10 Score=90.47 Aligned_cols=86 Identities=13% Similarity=0.074 Sum_probs=63.1
Q ss_pred CCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCC-----------ccHH-HHhCCCcCC----C----
Q 030433 63 TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF-----------PNAA-EKFGISLGG----S---- 122 (177)
Q Consensus 63 ~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~-----------~~~~-~~~~v~~~~----~---- 122 (177)
++++++|+||++||++|+...|.+.++.++|+++++.++.++.+.. ...+ +++++.-.. .
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~ 177 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP 177 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence 3466999999999999999999999999999988899999987421 1122 333332110 0
Q ss_pred --------------------CCCCCEEEEE-eCCEEeeeecCCCCCC
Q 030433 123 --------------------MGQLPTYILF-ENNAEINRFPAFGFEE 148 (177)
Q Consensus 123 --------------------~~~~Ptlii~-~~G~~~~r~~g~~~~~ 148 (177)
.+..|+.+++ ++|+.+.++.|..+.+
T Consensus 178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~ 224 (236)
T PLN02399 178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPF 224 (236)
T ss_pred hhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHH
Confidence 1125888888 8899999999886544
No 106
>PLN02412 probable glutathione peroxidase
Probab=99.06 E-value=5.3e-10 Score=84.05 Aligned_cols=88 Identities=10% Similarity=0.004 Sum_probs=64.5
Q ss_pred CCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCC-------C-ccH----HHHhCCCcCCC--------
Q 030433 63 TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL-------F-PNA----AEKFGISLGGS-------- 122 (177)
Q Consensus 63 ~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~-------~-~~~----~~~~~v~~~~~-------- 122 (177)
++++++|+||++||++|+...|.+.++.++|++.++.++.++.+. . .++ .+++++.....
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~ 107 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGK 107 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCC
Confidence 346699999999999999999999999999998889999998642 1 122 23334331110
Q ss_pred --------------------CCCCCEEEEE-eCCEEeeeecCCCCCCcc
Q 030433 123 --------------------MGQLPTYILF-ENNAEINRFPAFGFEEKF 150 (177)
Q Consensus 123 --------------------~~~~Ptlii~-~~G~~~~r~~g~~~~~~~ 150 (177)
....|+.+++ ++|+.+.++.|..+.+++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l 156 (167)
T PLN02412 108 NTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKI 156 (167)
T ss_pred CCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHH
Confidence 1235888888 889999999988765543
No 107
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=2.4e-10 Score=96.39 Aligned_cols=102 Identities=21% Similarity=0.348 Sum_probs=85.1
Q ss_pred eeecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCC-CCcEEEEEECCCCccHHHHhCCCcCCCCC
Q 030433 46 SNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSN-KNVSFGIVDLGLFPNAAEKFGISLGGSMG 124 (177)
Q Consensus 46 ~~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~-~~~~~~~vd~~~~~~~~~~~~v~~~~~~~ 124 (177)
+.+++.+++.......+.. ++|.||+|||++|+.+.|.+++++..+.. .++.+..+|.+....++++++++
T Consensus 146 v~~l~~~~~~~~~~~~~~~--~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~------ 217 (383)
T KOG0191|consen 146 VFELTKDNFDETVKDSDAD--WLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVR------ 217 (383)
T ss_pred eEEccccchhhhhhccCcc--eEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhccc------
Confidence 7778888887766654555 99999999999999999999999998873 67999999999889999999999
Q ss_pred CCCEEEEEeCCEE-eeeecCCCCCCccccccc
Q 030433 125 QLPTYILFENNAE-INRFPAFGFEEKFSHPHI 155 (177)
Q Consensus 125 ~~Ptlii~~~G~~-~~r~~g~~~~~~~~~~~~ 155 (177)
+.||+.+|++|.. .....|..+.+.+..|..
T Consensus 218 ~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~ 249 (383)
T KOG0191|consen 218 GYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVE 249 (383)
T ss_pred CCceEEEecCCCcccccccccccHHHHHHHHH
Confidence 9999999998888 666666666666665533
No 108
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.04 E-value=8.7e-10 Score=75.11 Aligned_cols=73 Identities=27% Similarity=0.544 Sum_probs=64.4
Q ss_pred CceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECC-CCccHHHHhC--CCcCCCCCCCCEEEEEeCCEEeee
Q 030433 64 SRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLG-LFPNAAEKFG--ISLGGSMGQLPTYILFENNAEINR 140 (177)
Q Consensus 64 ~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~-~~~~~~~~~~--v~~~~~~~~~Ptlii~~~G~~~~r 140 (177)
+++++++||++||++|+.+.|.+.++.+++.. .+.+..+|.. ........++ +. .+|+++++.+|....+
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~------~~p~~~~~~~~~~~~~ 104 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVDDENPDLAAEFGVAVR------SIPTLLLFKDGKEVDR 104 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECCCCChHHHHHHhhhhc------cCCeEEEEeCcchhhh
Confidence 55699999999999999999999999999973 6899999997 8899999999 88 8999999988887666
Q ss_pred ecC
Q 030433 141 FPA 143 (177)
Q Consensus 141 ~~g 143 (177)
..+
T Consensus 105 ~~~ 107 (127)
T COG0526 105 LVG 107 (127)
T ss_pred hhh
Confidence 655
No 109
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.04 E-value=6.7e-10 Score=82.07 Aligned_cols=87 Identities=14% Similarity=0.065 Sum_probs=61.8
Q ss_pred CCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCC--------C---ccHHHH-hCCCc-----------
Q 030433 63 TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL--------F---PNAAEK-FGISL----------- 119 (177)
Q Consensus 63 ~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~--------~---~~~~~~-~~v~~----------- 119 (177)
++++++|+|||+||++|+...|.+.++.++|+++++.++.++.+. . ...+++ +++..
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~ 100 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS 100 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence 345699999999999999999999999999998889999998521 1 122322 33321
Q ss_pred --CC-------CCCCCCE----EEEE-eCCEEeeeecCCCCCCc
Q 030433 120 --GG-------SMGQLPT----YILF-ENNAEINRFPAFGFEEK 149 (177)
Q Consensus 120 --~~-------~~~~~Pt----lii~-~~G~~~~r~~g~~~~~~ 149 (177)
.+ ...+.|+ .+++ ++|+.+.++.|..+.+.
T Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~ 144 (153)
T TIGR02540 101 EAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEE 144 (153)
T ss_pred CCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHH
Confidence 11 0125785 4555 88999999999876543
No 110
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.02 E-value=1.1e-09 Score=72.72 Aligned_cols=70 Identities=26% Similarity=0.325 Sum_probs=51.4
Q ss_pred HHHHHHhcCCCCceEEEEEecCCChhhHHHhHHH---HHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEE
Q 030433 53 QLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIF---PELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTY 129 (177)
Q Consensus 53 ~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l---~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptl 129 (177)
.+..+.++ +++++|+|+|+||++|+.+...+ +++.+.+. +++.++++|.++........+ . ++|++
T Consensus 9 al~~A~~~---~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~-~~fv~v~vd~~~~~~~~~~~~-~------~~P~~ 77 (82)
T PF13899_consen 9 ALAEAKKE---GKPVLVDFGADWCPPCKKLEREVFSDPEVQEALN-KNFVLVKVDVDDEDPNAQFDR-Q------GYPTF 77 (82)
T ss_dssp HHHHHHHH---TSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHH-HCSEEEEEETTTHHHHHHHHH-C------SSSEE
T ss_pred HHHHHHHc---CCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHH-CCEEEEEEEcCCCChhHHhCC-c------cCCEE
Confidence 33444444 45599999999999999999776 45555455 679999999987665443223 6 89999
Q ss_pred EEEe
Q 030433 130 ILFE 133 (177)
Q Consensus 130 ii~~ 133 (177)
++++
T Consensus 78 ~~ld 81 (82)
T PF13899_consen 78 FFLD 81 (82)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 9985
No 111
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.97 E-value=4.2e-09 Score=79.07 Aligned_cols=71 Identities=17% Similarity=0.283 Sum_probs=58.4
Q ss_pred CceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCC-----------------------------ccHHHH
Q 030433 64 SRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF-----------------------------PNAAEK 114 (177)
Q Consensus 64 ~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~-----------------------------~~~~~~ 114 (177)
+++++++||++||+.|....+.+.++.++++..++.++.++.+.. ..+++.
T Consensus 25 ~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ 104 (171)
T cd02969 25 GKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAKA 104 (171)
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHHH
Confidence 455999999999999999999999999999877899999987531 234557
Q ss_pred hCCCcCCCCCCCCEEEEE-eCCEEeee
Q 030433 115 FGISLGGSMGQLPTYILF-ENNAEINR 140 (177)
Q Consensus 115 ~~v~~~~~~~~~Ptlii~-~~G~~~~r 140 (177)
|++. .+|+.+++ ++|+.+.+
T Consensus 105 ~~v~------~~P~~~lid~~G~v~~~ 125 (171)
T cd02969 105 YGAA------CTPDFFLFDPDGKLVYR 125 (171)
T ss_pred cCCC------cCCcEEEECCCCeEEEe
Confidence 7787 89999999 58887754
No 112
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.6e-08 Score=74.20 Aligned_cols=91 Identities=20% Similarity=0.358 Sum_probs=70.4
Q ss_pred HHHHHhcCCCCceEEEEEecCCChhhHHHhHHH---HHHHHHhCCCCcEEEEEECCC----------------CccHHHH
Q 030433 54 LEALLTEGKTSRYWLVEFRAQCSSTCIRASRIF---PELSIAYSNKNVSFGIVDLGL----------------FPNAAEK 114 (177)
Q Consensus 54 ~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l---~~~~~~~~~~~~~~~~vd~~~----------------~~~~~~~ 114 (177)
+++.-+-..+++..++.|.++.|+.|.++...+ +++.+-+. +++.++.+|+.- ..++++.
T Consensus 32 ~~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk-~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~k 110 (182)
T COG2143 32 FDDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLK-EHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQK 110 (182)
T ss_pred HHHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHh-hCeEEEEEEeccCcceEeecCceeeeecHHHHHHH
Confidence 344433335667799999999999999998765 33444343 568888888752 2478999
Q ss_pred hCCCcCCCCCCCCEEEEE-eCCEEeeeecCCCCCCccc
Q 030433 115 FGISLGGSMGQLPTYILF-ENNAEINRFPAFGFEEKFS 151 (177)
Q Consensus 115 ~~v~~~~~~~~~Ptlii~-~~G~~~~r~~g~~~~~~~~ 151 (177)
|+|+ ++||+++| ++|+-+..++|+.+.+++.
T Consensus 111 f~vr------stPtfvFfdk~Gk~Il~lPGY~ppe~Fl 142 (182)
T COG2143 111 FAVR------STPTFVFFDKTGKTILELPGYMPPEQFL 142 (182)
T ss_pred hccc------cCceEEEEcCCCCEEEecCCCCCHHHHH
Confidence 9999 99999999 6799999999999988753
No 113
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.96 E-value=5.8e-09 Score=75.31 Aligned_cols=86 Identities=12% Similarity=0.087 Sum_probs=64.3
Q ss_pred CceEEEEEe-cCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCC---------------------CccHHHHhCCCcCC
Q 030433 64 SRYWLVEFR-AQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL---------------------FPNAAEKFGISLGG 121 (177)
Q Consensus 64 ~~~vlV~F~-a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~---------------------~~~~~~~~~v~~~~ 121 (177)
+++++|+|| +.||+.|....|.+.++.+++...++.++.+..+. ...+++.|++...+
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~ 102 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGEK 102 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccc
Confidence 345999999 68999999999999999998887778888887642 23566778877210
Q ss_pred ---CCCCCCEEEEE-eCCEEeeeecCCCCCCc
Q 030433 122 ---SMGQLPTYILF-ENNAEINRFPAFGFEEK 149 (177)
Q Consensus 122 ---~~~~~Ptlii~-~~G~~~~r~~g~~~~~~ 149 (177)
+....|+.+++ ++|+...++.|......
T Consensus 103 ~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~ 134 (140)
T cd03017 103 KKKYMGIERSTFLIDPDGKIVKVWRKVKPKGH 134 (140)
T ss_pred ccccCCcceeEEEECCCCEEEEEEecCCccch
Confidence 11112898888 57999999999875543
No 114
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.95 E-value=7.4e-09 Score=83.23 Aligned_cols=95 Identities=19% Similarity=0.264 Sum_probs=75.7
Q ss_pred cceeecC-hhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCC
Q 030433 44 GISNKLT-PLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGS 122 (177)
Q Consensus 44 ~~~~~l~-~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~ 122 (177)
+.+.+++ ++.|.+.+.+..+...|+|+||-+.++.|..+...|..++.+|+. ++|+++.....+ ...+|...
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~--vKFvkI~a~~~~-~~~~f~~~---- 197 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE--VKFVKIRASKCP-ASENFPDK---- 197 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT--SEEEEEEECGCC-TTTTS-TT----
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc--eEEEEEehhccC-cccCCccc----
Confidence 3566775 578888887656667799999999999999999999999999975 999999987665 78889999
Q ss_pred CCCCCEEEEEeCCEEeeeecCCCCC
Q 030433 123 MGQLPTYILFENNAEINRFPAFGFE 147 (177)
Q Consensus 123 ~~~~Ptlii~~~G~~~~r~~g~~~~ 147 (177)
.+||+++|++|..+..++|....
T Consensus 198 --~LPtllvYk~G~l~~~~V~l~~~ 220 (265)
T PF02114_consen 198 --NLPTLLVYKNGDLIGNFVGLTDL 220 (265)
T ss_dssp --C-SEEEEEETTEEEEEECTGGGC
T ss_pred --CCCEEEEEECCEEEEeEEehHHh
Confidence 99999999999999999987643
No 115
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.93 E-value=2.5e-09 Score=78.77 Aligned_cols=70 Identities=11% Similarity=0.236 Sum_probs=56.2
Q ss_pred CceEEEEEecCCChhhHHHhHHHHHHHHHhCCC--CcEEEEEECCCC-------------------------ccHHHHhC
Q 030433 64 SRYWLVEFRAQCSSTCIRASRIFPELSIAYSNK--NVSFGIVDLGLF-------------------------PNAAEKFG 116 (177)
Q Consensus 64 ~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~--~~~~~~vd~~~~-------------------------~~~~~~~~ 116 (177)
++.+.+||.|.|||||+.+.|.+.++.++..+. .+.++-|+.|+. ..+.++|+
T Consensus 33 gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky~ 112 (157)
T KOG2501|consen 33 GKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKYE 112 (157)
T ss_pred CcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhcc
Confidence 355999999999999999999999999988733 377777776643 24677899
Q ss_pred CCcCCCCCCCCEEEEE-eCCEEee
Q 030433 117 ISLGGSMGQLPTYILF-ENNAEIN 139 (177)
Q Consensus 117 v~~~~~~~~~Ptlii~-~~G~~~~ 139 (177)
|. ++|++++. .+|..+-
T Consensus 113 v~------~iP~l~i~~~dG~~v~ 130 (157)
T KOG2501|consen 113 VK------GIPALVILKPDGTVVT 130 (157)
T ss_pred cC------cCceeEEecCCCCEeh
Confidence 99 99999999 5676654
No 116
>smart00594 UAS UAS domain.
Probab=98.93 E-value=7.1e-09 Score=73.98 Aligned_cols=81 Identities=12% Similarity=0.080 Sum_probs=61.3
Q ss_pred CceEEEEEecCCChhhHHHhHHH---HHHHHHhCCCCcEEEEEECCCC--ccHHHHhCCCcCCCCCCCCEEEEE-eCC--
Q 030433 64 SRYWLVEFRAQCSSTCIRASRIF---PELSIAYSNKNVSFGIVDLGLF--PNAAEKFGISLGGSMGQLPTYILF-ENN-- 135 (177)
Q Consensus 64 ~~~vlV~F~a~wC~~C~~~~p~l---~~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~~~~~~~Ptlii~-~~G-- 135 (177)
+++++|+|+++||++|+.+.... .++.+..+ +++.+..+|++.. ..++++|++. ++|+++++ .+|
T Consensus 27 ~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~-~~fv~~~~dv~~~eg~~l~~~~~~~------~~P~~~~l~~~~g~ 99 (122)
T smart00594 27 RRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIR-ENFIFWQVDVDTSEGQRVSQFYKLD------SFPYVAIVDPRTGQ 99 (122)
T ss_pred cCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHH-cCEEEEEecCCChhHHHHHHhcCcC------CCCEEEEEecCCCc
Confidence 44599999999999999987653 55566565 5688888887644 4678999999 99999999 455
Q ss_pred ---EEeeeecCCCCCCccc
Q 030433 136 ---AEINRFPAFGFEEKFS 151 (177)
Q Consensus 136 ---~~~~r~~g~~~~~~~~ 151 (177)
+.+.++.|..+.+++.
T Consensus 100 ~~~~~~~~~~G~~~~~~l~ 118 (122)
T smart00594 100 RVIEWVGVVEGEISPEELM 118 (122)
T ss_pred eeEEEeccccCCCCHHHHH
Confidence 3567777876655443
No 117
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.91 E-value=5.9e-09 Score=79.42 Aligned_cols=43 Identities=12% Similarity=-0.028 Sum_probs=36.5
Q ss_pred CceE-EEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECC
Q 030433 64 SRYW-LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLG 106 (177)
Q Consensus 64 ~~~v-lV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~ 106 (177)
++++ ++.+||+|||+|+..+|.++++.++|++.++.++.++++
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 3434 455699999999999999999999998888999999864
No 118
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.89 E-value=1.4e-08 Score=71.71 Aligned_cols=77 Identities=18% Similarity=0.139 Sum_probs=58.2
Q ss_pred CCceEEEEEecC-CChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCC---------------------ccHHHHhCCCcC
Q 030433 63 TSRYWLVEFRAQ-CSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF---------------------PNAAEKFGISLG 120 (177)
Q Consensus 63 ~~~~vlV~F~a~-wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~---------------------~~~~~~~~v~~~ 120 (177)
++++++|.||++ ||+.|+...+.+.++.++++..++.++.++.+.. ..+.+.|++...
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 346699999999 9999999999999999999988899999987632 345556666533
Q ss_pred CCCCCCCEEEEE-eCCEEee
Q 030433 121 GSMGQLPTYILF-ENNAEIN 139 (177)
Q Consensus 121 ~~~~~~Ptlii~-~~G~~~~ 139 (177)
......|+.+++ ++|+.+.
T Consensus 104 ~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp TTSEESEEEEEEETTSBEEE
T ss_pred cCCceEeEEEEECCCCEEEe
Confidence 334467877777 4566543
No 119
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.84 E-value=1.8e-08 Score=61.18 Aligned_cols=60 Identities=32% Similarity=0.528 Sum_probs=51.6
Q ss_pred EEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHH---HhCCCcCCCCCCCCEEEEEeCC
Q 030433 68 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAE---KFGISLGGSMGQLPTYILFENN 135 (177)
Q Consensus 68 lV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~---~~~v~~~~~~~~~Ptlii~~~G 135 (177)
++.||++||++|+.+.+.+.++ +....++.+..+|.+....... .+++. ++|+++++++|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDEDPALEKELKRYGVG------GVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCCChHHhhHHHhCCCc------cccEEEEEeCC
Confidence 4789999999999999999998 3444679999999998877665 78888 99999999887
No 120
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.83 E-value=4.6e-08 Score=71.37 Aligned_cols=81 Identities=5% Similarity=0.019 Sum_probs=60.0
Q ss_pred ceEEEEEe-cCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCC---------------------C--ccHHHHhCCCcC
Q 030433 65 RYWLVEFR-AQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL---------------------F--PNAAEKFGISLG 120 (177)
Q Consensus 65 ~~vlV~F~-a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~---------------------~--~~~~~~~~v~~~ 120 (177)
++++|.|| ++||+.|....|.+.++.++++..++.++.|+.+. . ..+++.|++...
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~ 108 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDE 108 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCccc
Confidence 44888887 99999999999999999999987788888887642 2 345566666522
Q ss_pred CCCCCCCEEEEE-eCCEEeeeecCCC
Q 030433 121 GSMGQLPTYILF-ENNAEINRFPAFG 145 (177)
Q Consensus 121 ~~~~~~Ptlii~-~~G~~~~r~~g~~ 145 (177)
+.....|+.+++ ++|+...+..|..
T Consensus 109 ~~~~~~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 109 DLGVAERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred cCCCccceEEEECCCCEEEEEEecCC
Confidence 211123477777 6899999988886
No 121
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.82 E-value=4.3e-08 Score=71.22 Aligned_cols=41 Identities=17% Similarity=0.108 Sum_probs=35.1
Q ss_pred EEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCC
Q 030433 67 WLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL 107 (177)
Q Consensus 67 vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~ 107 (177)
+++.||++||++|+...|.+.++.+++...++.++.|+.+.
T Consensus 27 vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~ 67 (149)
T cd02970 27 VVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPES 67 (149)
T ss_pred EEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCC
Confidence 45555799999999999999999999987789999998753
No 122
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.80 E-value=1e-08 Score=66.51 Aligned_cols=58 Identities=19% Similarity=0.356 Sum_probs=45.3
Q ss_pred EEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHh-----CCCcCCCCCCCCEEEEEeCCEEee
Q 030433 68 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKF-----GISLGGSMGQLPTYILFENNAEIN 139 (177)
Q Consensus 68 lV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~-----~v~~~~~~~~~Ptlii~~~G~~~~ 139 (177)
++.||++||++|+.+++.+++. ++.+-.+|+++++.....+ ++. ++|++ ++++|+.+.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-------~~~~~~idi~~~~~~~~~~~~~~~~~~------~vP~i-~~~~g~~l~ 64 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-------GAAYEWVDIEEDEGAADRVVSVNNGNM------TVPTV-KFADGSFLT 64 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------CCceEEEeCcCCHhHHHHHHHHhCCCc------eeCEE-EECCCeEec
Confidence 5679999999999999988654 2556678888887766654 777 89997 578887655
No 123
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.77 E-value=7.6e-08 Score=72.49 Aligned_cols=83 Identities=8% Similarity=-0.009 Sum_probs=61.7
Q ss_pred CceEEEEEe-cCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCC----------------------------ccHHHH
Q 030433 64 SRYWLVEFR-AQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF----------------------------PNAAEK 114 (177)
Q Consensus 64 ~~~vlV~F~-a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~----------------------------~~~~~~ 114 (177)
+++++|+|| ++||++|....|.+.++.+++...++.++.|+.+.. ..++++
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 108 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISRD 108 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHHH
Confidence 356999999 899999999999999999999877888888876532 134455
Q ss_pred hCCCcCCCCCCCCEEEEE-eCCEEeeeecCCCC
Q 030433 115 FGISLGGSMGQLPTYILF-ENNAEINRFPAFGF 146 (177)
Q Consensus 115 ~~v~~~~~~~~~Ptlii~-~~G~~~~r~~g~~~ 146 (177)
|++.........|+.+++ ++|+...++.+..+
T Consensus 109 ~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~ 141 (173)
T cd03015 109 YGVLDEEEGVALRGTFIIDPEGIIRHITVNDLP 141 (173)
T ss_pred hCCccccCCceeeEEEEECCCCeEEEEEecCCC
Confidence 665432222257888888 68999998876543
No 124
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.75 E-value=4.2e-08 Score=70.77 Aligned_cols=83 Identities=14% Similarity=0.275 Sum_probs=53.2
Q ss_pred HHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEEEE-eCC
Q 030433 57 LLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILF-ENN 135 (177)
Q Consensus 57 ~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii~-~~G 135 (177)
.++. .....-++.|..+|||.|+...|.+.++++..+ ++++-.+..++++++.++|... +.+++|+++++ ++|
T Consensus 35 ~l~~-~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p--~i~~~~i~rd~~~el~~~~lt~---g~~~IP~~I~~d~~~ 108 (129)
T PF14595_consen 35 KLKS-IQKPYNILVITETWCGDCARNVPVLAKIAEANP--NIEVRIILRDENKELMDQYLTN---GGRSIPTFIFLDKDG 108 (129)
T ss_dssp HHHT---S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T--TEEEEEE-HHHHHHHTTTTTT----SS--SSEEEEE-TT-
T ss_pred HHHh-cCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC--CCeEEEEEecCChhHHHHHHhC---CCeecCEEEEEcCCC
Confidence 4444 333447888999999999999999999999754 5776666667777776665331 33399999999 568
Q ss_pred EEeeeecCCC
Q 030433 136 AEINRFPAFG 145 (177)
Q Consensus 136 ~~~~r~~g~~ 145 (177)
++++++..+.
T Consensus 109 ~~lg~wgerP 118 (129)
T PF14595_consen 109 KELGRWGERP 118 (129)
T ss_dssp -EEEEEESS-
T ss_pred CEeEEEcCCC
Confidence 9999887764
No 125
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.75 E-value=9.5e-08 Score=68.83 Aligned_cols=83 Identities=10% Similarity=0.041 Sum_probs=61.2
Q ss_pred CceEEEEEe-cCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCC----------------------CccHHHHhCCCcC
Q 030433 64 SRYWLVEFR-AQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL----------------------FPNAAEKFGISLG 120 (177)
Q Consensus 64 ~~~vlV~F~-a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~----------------------~~~~~~~~~v~~~ 120 (177)
+++++|+|| +.||+.|....|.+.++.++++..++.++.+..+. ...+++.|++...
T Consensus 22 gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~~ 101 (140)
T cd02971 22 GKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLIE 101 (140)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCccc
Confidence 445999999 78999999999999999999876778888887642 1244556666622
Q ss_pred CC---CCCCCEEEEE-eCCEEeeeecCCCC
Q 030433 121 GS---MGQLPTYILF-ENNAEINRFPAFGF 146 (177)
Q Consensus 121 ~~---~~~~Ptlii~-~~G~~~~r~~g~~~ 146 (177)
+. ....|+.+++ ++|+.+.+..|...
T Consensus 102 ~~~~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 102 KSAGGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred cccccCceeEEEEEECCCCcEEEEEecCCC
Confidence 11 1234577777 57999999888876
No 126
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.74 E-value=7.7e-08 Score=70.89 Aligned_cols=85 Identities=15% Similarity=0.085 Sum_probs=61.4
Q ss_pred CceEEEEEecC-CChhhHHHhHHHHHHHHHhCCCCcEEEEEECCC---------------------CccHHHHhCCCcCC
Q 030433 64 SRYWLVEFRAQ-CSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL---------------------FPNAAEKFGISLGG 121 (177)
Q Consensus 64 ~~~vlV~F~a~-wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~---------------------~~~~~~~~~v~~~~ 121 (177)
+++++|+||++ ||+.|....+.+.++.++++++++.++.|+.+. ...++++|++...+
T Consensus 30 gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~ 109 (154)
T PRK09437 30 GQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGEK 109 (154)
T ss_pred CCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCccc
Confidence 34599999976 688899999999999999987788888887652 23456777775211
Q ss_pred C--C----CCCCEEEEE-eCCEEeeeecCCCCCC
Q 030433 122 S--M----GQLPTYILF-ENNAEINRFPAFGFEE 148 (177)
Q Consensus 122 ~--~----~~~Ptlii~-~~G~~~~r~~g~~~~~ 148 (177)
. . ...|+.+++ ++|+.+..+.|....+
T Consensus 110 ~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~ 143 (154)
T PRK09437 110 KFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSN 143 (154)
T ss_pred ccccccccCcceEEEEECCCCEEEEEEcCCCcch
Confidence 0 0 012666677 6899999998875543
No 127
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.73 E-value=1.3e-07 Score=68.77 Aligned_cols=81 Identities=10% Similarity=0.079 Sum_probs=59.1
Q ss_pred CceEEEEEecCC-ChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCC-----------------------ccHHHHhCCCc
Q 030433 64 SRYWLVEFRAQC-SSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF-----------------------PNAAEKFGISL 119 (177)
Q Consensus 64 ~~~vlV~F~a~w-C~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~-----------------------~~~~~~~~v~~ 119 (177)
+++++++||++| |++|+...|.+.++.++++ ++.++.++.+.. ...++.|++..
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~ 103 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLI 103 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCee
Confidence 455999999999 6999999999999999974 688888887521 23445666541
Q ss_pred CCCCCCCCEEEEE-eCCEEeeeecCCCC
Q 030433 120 GGSMGQLPTYILF-ENNAEINRFPAFGF 146 (177)
Q Consensus 120 ~~~~~~~Ptlii~-~~G~~~~r~~g~~~ 146 (177)
.......|+.+++ ++|+......|...
T Consensus 104 ~~~~~~~~~~~iid~~G~I~~~~~~~~~ 131 (143)
T cd03014 104 KDLGLLARAVFVIDENGKVIYVELVPEI 131 (143)
T ss_pred ccCCccceEEEEEcCCCeEEEEEECCCc
Confidence 1111136888888 58999998887643
No 128
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.73 E-value=2.8e-09 Score=82.82 Aligned_cols=100 Identities=18% Similarity=0.290 Sum_probs=87.0
Q ss_pred cceeecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCC
Q 030433 44 GISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSM 123 (177)
Q Consensus 44 ~~~~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~ 123 (177)
..+..++.+++...+.. . +++.|+|+|||.|+...|.++.++.--.+-+++..+||+..++.+.-+|-+.
T Consensus 24 s~~~~~~eenw~~~l~g---e--wmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vt----- 93 (248)
T KOG0913|consen 24 SKLTRIDEENWKELLTG---E--WMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVT----- 93 (248)
T ss_pred ceeEEecccchhhhhch---H--HHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEE-----
Confidence 36888999999877765 3 9999999999999999999999887666678999999999999999999999
Q ss_pred CCCCEEEEEeCCEEeeeecCCCCCCccccccc
Q 030433 124 GQLPTYILFENNAEINRFPAFGFEEKFSHPHI 155 (177)
Q Consensus 124 ~~~Ptlii~~~G~~~~r~~g~~~~~~~~~~~~ 155 (177)
..||+.=.++|.- -|+.|..++..++++..
T Consensus 94 -aLptIYHvkDGeF-rrysgaRdk~dfisf~~ 123 (248)
T KOG0913|consen 94 -ALPTIYHVKDGEF-RRYSGARDKNDFISFEE 123 (248)
T ss_pred -ecceEEEeecccc-ccccCcccchhHHHHHH
Confidence 9999999999984 67888888888776643
No 129
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=3e-08 Score=69.49 Aligned_cols=81 Identities=21% Similarity=0.304 Sum_probs=59.9
Q ss_pred hHHHHHHhcCCCCceEEEEEec--------CCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCc---cHHHHhCCCcC
Q 030433 52 LQLEALLTEGKTSRYWLVEFRA--------QCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP---NAAEKFGISLG 120 (177)
Q Consensus 52 ~~~~~~l~~~~~~~~vlV~F~a--------~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~ 120 (177)
++|++.+++..+++.++|+|++ +|||.|....|.+.+..+..+ .++.|+.|+++.-+ ..+..|.+...
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap-~~~~~v~v~VG~rp~Wk~p~n~FR~d~~ 91 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP-EDVHFVHVYVGNRPYWKDPANPFRKDPG 91 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC-CceEEEEEEecCCCcccCCCCccccCCC
Confidence 7888887664556669999997 799999999999999888555 78999999987433 33333333321
Q ss_pred CCCCCCCEEEEEeC
Q 030433 121 GSMGQLPTYILFEN 134 (177)
Q Consensus 121 ~~~~~~Ptlii~~~ 134 (177)
. ..++||++=+++
T Consensus 92 ~-lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 92 I-LTAVPTLLRWKR 104 (128)
T ss_pred c-eeecceeeEEcC
Confidence 1 249999999975
No 130
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.72 E-value=1.2e-07 Score=72.41 Aligned_cols=82 Identities=9% Similarity=-0.024 Sum_probs=60.5
Q ss_pred CceEEEEEe-cCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCC-------------------------CccHHHHhCC
Q 030433 64 SRYWLVEFR-AQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL-------------------------FPNAAEKFGI 117 (177)
Q Consensus 64 ~~~vlV~F~-a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~-------------------------~~~~~~~~~v 117 (177)
+++++|+|| ++||++|....|.+.+..+++...++.++.|+.+. ...+++.|++
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv 110 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGV 110 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhCC
Confidence 456999999 99999999999999999999876778888877552 2245567776
Q ss_pred CcCCCCCCCCEEEEE-eCCEEeeeecCCC
Q 030433 118 SLGGSMGQLPTYILF-ENNAEINRFPAFG 145 (177)
Q Consensus 118 ~~~~~~~~~Ptlii~-~~G~~~~r~~g~~ 145 (177)
.........|+.+++ ++|+......+..
T Consensus 111 ~~~~~g~~~p~tfiID~~G~I~~~~~~~~ 139 (187)
T TIGR03137 111 LIEEAGLADRGTFVIDPEGVIQAVEITDN 139 (187)
T ss_pred cccCCCceeeEEEEECCCCEEEEEEEeCC
Confidence 522111235888888 6899888776443
No 131
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.70 E-value=1.8e-07 Score=70.28 Aligned_cols=74 Identities=12% Similarity=0.165 Sum_probs=55.7
Q ss_pred CCceEEEEEecCC-ChhhHHHhHHHHHHHHHhCCCCcEEEEEECCC-----------------------CccHHHHhCCC
Q 030433 63 TSRYWLVEFRAQC-SSTCIRASRIFPELSIAYSNKNVSFGIVDLGL-----------------------FPNAAEKFGIS 118 (177)
Q Consensus 63 ~~~~vlV~F~a~w-C~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~-----------------------~~~~~~~~~v~ 118 (177)
++++++|+||++| |++|....|.+.+..+++. ++.++.++.+. ...+++.|++.
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~ 120 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVA 120 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCe
Confidence 3456999999999 9999999999999998873 68888887652 12455667766
Q ss_pred cCCCCCCCC---------EEEEE-eCCEEeeeecCC
Q 030433 119 LGGSMGQLP---------TYILF-ENNAEINRFPAF 144 (177)
Q Consensus 119 ~~~~~~~~P---------tlii~-~~G~~~~r~~g~ 144 (177)
..| +.+++ ++|+......+.
T Consensus 121 ------~~~~~~~g~~~r~tfvId~~G~I~~~~~~~ 150 (167)
T PRK00522 121 ------IAEGPLKGLLARAVFVLDENNKVVYSELVP 150 (167)
T ss_pred ------ecccccCCceeeEEEEECCCCeEEEEEECC
Confidence 444 77777 688888877544
No 132
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.68 E-value=6.3e-08 Score=61.73 Aligned_cols=55 Identities=15% Similarity=0.286 Sum_probs=43.9
Q ss_pred EEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccH----HHHhCCCcCCCCCCCCEEEEEeCCEE
Q 030433 68 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNA----AEKFGISLGGSMGQLPTYILFENNAE 137 (177)
Q Consensus 68 lV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~~~~~~~Ptlii~~~G~~ 137 (177)
+..|+++||++|+...+.+++ .++.+..+|+++++.. .+.+++. ++|++++. |+.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~~~~~~~~~~~~~~~~------~vP~~~~~--~~~ 60 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------KGIAFEEIDVEKDSAAREEVLKVLGQR------GVPVIVIG--HKI 60 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------CCCeEEEEeccCCHHHHHHHHHHhCCC------cccEEEEC--CEE
Confidence 467999999999999988865 3488889999887654 4568988 99999874 654
No 133
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.66 E-value=9.6e-08 Score=72.41 Aligned_cols=97 Identities=16% Similarity=0.143 Sum_probs=82.6
Q ss_pred CcceeecC-hhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCC
Q 030433 43 LGISNKLT-PLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGG 121 (177)
Q Consensus 43 ~~~~~~l~-~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~ 121 (177)
-+...++. ..+|-+....+.+ |+++||-+.-..|+-+...++.++..+- ..+|++||....|-++.+.+|.
T Consensus 65 hG~y~ev~~Ekdf~~~~~kS~k---VVcHFY~~~f~RCKimDkhLe~LAk~h~--eTrFikvnae~~PFlv~kL~Ik--- 136 (211)
T KOG1672|consen 65 HGEYEEVASEKDFFEEVKKSEK---VVCHFYRPEFFRCKIMDKHLEILAKRHV--ETRFIKVNAEKAPFLVTKLNIK--- 136 (211)
T ss_pred CceEEEeccHHHHHHHhhcCce---EEEEEEcCCCcceehHHHHHHHHHHhcc--cceEEEEecccCceeeeeeeee---
Confidence 33455555 4566556655355 9999999999999999999999999986 4999999999999999999999
Q ss_pred CCCCCCEEEEEeCCEEeeeecCCCCCCcc
Q 030433 122 SMGQLPTYILFENNAEINRFPAFGFEEKF 150 (177)
Q Consensus 122 ~~~~~Ptlii~~~G~~~~r~~g~~~~~~~ 150 (177)
.+|++.+|+||+...+++|...-+.-
T Consensus 137 ---VLP~v~l~k~g~~~D~iVGF~dLGnk 162 (211)
T KOG1672|consen 137 ---VLPTVALFKNGKTVDYVVGFTDLGNK 162 (211)
T ss_pred ---EeeeEEEEEcCEEEEEEeeHhhcCCC
Confidence 89999999999999999999876643
No 134
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.54 E-value=2.8e-07 Score=66.58 Aligned_cols=44 Identities=11% Similarity=0.113 Sum_probs=37.7
Q ss_pred CceEEEEEecCCChh-hHHHhHHHHHHHHHhCCC---CcEEEEEECCC
Q 030433 64 SRYWLVEFRAQCSST-CIRASRIFPELSIAYSNK---NVSFGIVDLGL 107 (177)
Q Consensus 64 ~~~vlV~F~a~wC~~-C~~~~p~l~~~~~~~~~~---~~~~~~vd~~~ 107 (177)
+++++|+||++||++ |....+.+.++.+++... ++.++.|+.+.
T Consensus 22 gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 22 GKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 456999999999998 999999999999999754 48888888653
No 135
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.52 E-value=9.6e-07 Score=67.63 Aligned_cols=80 Identities=10% Similarity=-0.031 Sum_probs=60.1
Q ss_pred CCceEEEEEe-cCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCC-------------------------CccHHHHhC
Q 030433 63 TSRYWLVEFR-AQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL-------------------------FPNAAEKFG 116 (177)
Q Consensus 63 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~-------------------------~~~~~~~~~ 116 (177)
++++++++|| ++||+.|..+.+.+.+..+++...++.++.++.+. +..+++.|+
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 3456999999 99999999999999999999977778887777552 235667788
Q ss_pred CCcCCCCCCC--CEEEEE-eCCEEeeeecCC
Q 030433 117 ISLGGSMGQL--PTYILF-ENNAEINRFPAF 144 (177)
Q Consensus 117 v~~~~~~~~~--Ptlii~-~~G~~~~r~~g~ 144 (177)
+.... .++ |+.+++ ++|++.......
T Consensus 110 v~~~~--~g~~~r~tfIID~~G~I~~~~~~~ 138 (187)
T PRK10382 110 NMRED--EGLADRATFVVDPQGIIQAIEVTA 138 (187)
T ss_pred CCccc--CCceeeEEEEECCCCEEEEEEEeC
Confidence 73211 144 988888 589887776544
No 136
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.51 E-value=9.9e-07 Score=65.84 Aligned_cols=94 Identities=17% Similarity=0.127 Sum_probs=61.3
Q ss_pred cceeecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhH-HH--HHHHHHhCCCCcEEEEEECCCCccHHHHh-----
Q 030433 44 GISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASR-IF--PELSIAYSNKNVSFGIVDLGLFPNAAEKF----- 115 (177)
Q Consensus 44 ~~~~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p-~l--~~~~~~~~~~~~~~~~vd~~~~~~~~~~~----- 115 (177)
-.......+.++.+.++ ++. ++|.++++||.-|..|.. .+ .++++.++ .++.-+++|.++.+++.+.|
T Consensus 20 V~W~~w~~ea~~~Ak~e-~Kp--Ifl~ig~~~C~wChvM~~esf~d~eVa~~lN-~~FI~VkvDree~Pdid~~y~~~~~ 95 (163)
T PF03190_consen 20 VNWQPWGEEALEKAKKE-NKP--IFLSIGYSWCHWCHVMERESFSDPEVAEYLN-RNFIPVKVDREERPDIDKIYMNAVQ 95 (163)
T ss_dssp S--B-SSHHHHHHHHHH-T----EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHH-HH-EEEEEETTT-HHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHHHhc-CCc--EEEEEEecCCcchhhhcccCcCCHHHHHHHh-CCEEEEEeccccCccHHHHHHHHHH
Confidence 34555566778777666 444 999999999999998874 44 45666665 56888999999999999988
Q ss_pred ---CCCcCCCCCCCCEEEEE-eCCEEeeeecCCCCC
Q 030433 116 ---GISLGGSMGQLPTYILF-ENNAEINRFPAFGFE 147 (177)
Q Consensus 116 ---~v~~~~~~~~~Ptlii~-~~G~~~~r~~g~~~~ 147 (177)
+.. |+|+.+++ .+|+.+.--.....+
T Consensus 96 ~~~~~g------GwPl~vfltPdg~p~~~~tY~P~~ 125 (163)
T PF03190_consen 96 AMSGSG------GWPLTVFLTPDGKPFFGGTYFPPE 125 (163)
T ss_dssp HHHS---------SSEEEEE-TTS-EEEEESS--SS
T ss_pred HhcCCC------CCCceEEECCCCCeeeeeeecCCC
Confidence 566 99999999 788887764444433
No 137
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.49 E-value=1.8e-06 Score=61.28 Aligned_cols=77 Identities=18% Similarity=0.314 Sum_probs=52.0
Q ss_pred hHHHHHHhc-CCCCceEEEEEec-------CCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCc-------cHHH--H
Q 030433 52 LQLEALLTE-GKTSRYWLVEFRA-------QCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP-------NAAE--K 114 (177)
Q Consensus 52 ~~~~~~l~~-~~~~~~vlV~F~a-------~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~-------~~~~--~ 114 (177)
+++.+.++. ..++++++|.|++ +|||.|....|.+++..+..+ .+..++.+.++..+ ..-. +
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~-~~~~lv~v~VG~r~~Wkdp~n~fR~~p~ 84 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAP-ENARLVYVEVGDRPEWKDPNNPFRTDPD 84 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-S-TTEEEEEEE---HHHHC-TTSHHHH--C
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCC-CCceEEEEEcCCHHHhCCCCCCceEcce
Confidence 677666653 1344669999986 599999999999999887754 57889999886322 2222 4
Q ss_pred hCCCcCCCCCCCCEEEEEeCC
Q 030433 115 FGISLGGSMGQLPTYILFENN 135 (177)
Q Consensus 115 ~~v~~~~~~~~~Ptlii~~~G 135 (177)
+++. ++||++-++.|
T Consensus 85 ~~l~------~IPTLi~~~~~ 99 (119)
T PF06110_consen 85 LKLK------GIPTLIRWETG 99 (119)
T ss_dssp C---------SSSEEEECTSS
T ss_pred eeee------ecceEEEECCC
Confidence 7888 99999999776
No 138
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.49 E-value=3.5e-06 Score=59.67 Aligned_cols=104 Identities=15% Similarity=0.278 Sum_probs=83.1
Q ss_pred hhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEE
Q 030433 51 PLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYI 130 (177)
Q Consensus 51 ~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptli 130 (177)
..+.+.++.. ...+.+++-|.-+|-|.|..+...+.++++... +-..++-+|+++.++..+-|++. ..||++
T Consensus 11 ~~~VdqaI~~-t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vs-nfa~IylvdideV~~~~~~~~l~------~p~tvm 82 (142)
T KOG3414|consen 11 GWEVDQAILS-TEERLVVIRFGRDWDPTCMKMDELLSSIAEDVS-NFAVIYLVDIDEVPDFVKMYELY------DPPTVM 82 (142)
T ss_pred HHHHHHHHhc-ccceEEEEEecCCCCchHhhHHHHHHHHHHHHh-hceEEEEEecchhhhhhhhhccc------CCceEE
Confidence 4777777777 667789999999999999999999999999886 55677889999999999999999 899999
Q ss_pred EEeCCEEeeeecCCCCCCcccccccchHhHhh
Q 030433 131 LFENNAEINRFPAFGFEEKFSHPHITKKLIAH 162 (177)
Q Consensus 131 i~~~G~~~~r~~g~~~~~~~~~~~~~~~~~~~ 162 (177)
+|=+++-+.-=.|-.+...+.-+.-.|++++.
T Consensus 83 fFfn~kHmkiD~gtgdn~Kin~~~~~kq~~Id 114 (142)
T KOG3414|consen 83 FFFNNKHMKIDLGTGDNNKINFAFEDKQEFID 114 (142)
T ss_pred EEEcCceEEEeeCCCCCceEEEEeccHHHHHH
Confidence 99777665555566666655544445555543
No 139
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.49 E-value=6.1e-07 Score=59.00 Aligned_cols=61 Identities=21% Similarity=0.230 Sum_probs=45.5
Q ss_pred EEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCcc-----HHHHhCCCcCCCCCCCCEEEEEeCCEEee
Q 030433 68 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPN-----AAEKFGISLGGSMGQLPTYILFENNAEIN 139 (177)
Q Consensus 68 lV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~-----~~~~~~v~~~~~~~~~Ptlii~~~G~~~~ 139 (177)
++.|+++|||+|+.+.+.+++.. .+ ..+.++.+|.+++.. +.+.+++. ++|++ +-+|+.+.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~------~vP~v--~i~g~~ig 66 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VK-PAYEVVELDQLSNGSEIQDYLEEITGQR------TVPNI--FINGKFIG 66 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CC-CCCEEEEeeCCCChHHHHHHHHHHhCCC------CCCeE--EECCEEEc
Confidence 46799999999999999998875 32 347788887765543 55666888 89997 45777544
No 140
>PRK15000 peroxidase; Provisional
Probab=98.46 E-value=1.8e-06 Score=66.79 Aligned_cols=86 Identities=12% Similarity=0.028 Sum_probs=63.4
Q ss_pred CCceEEEEEec-CCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCC----------------------------ccHHH
Q 030433 63 TSRYWLVEFRA-QCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF----------------------------PNAAE 113 (177)
Q Consensus 63 ~~~~vlV~F~a-~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~----------------------------~~~~~ 113 (177)
++++++++||+ +||+.|..+.+.+.+..+++...++.++.++.+.. ..+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 35569999999 59999999999999999999877888888887621 13444
Q ss_pred HhCCCcCCCCCCCCEEEEE-eCCEEeeeecCCCCCC
Q 030433 114 KFGISLGGSMGQLPTYILF-ENNAEINRFPAFGFEE 148 (177)
Q Consensus 114 ~~~v~~~~~~~~~Ptlii~-~~G~~~~r~~g~~~~~ 148 (177)
.|++.......+.|+.+++ ++|+......+..+.+
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~g 148 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLG 148 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCC
Confidence 5665422222258988888 5899888777765544
No 141
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.45 E-value=1.5e-06 Score=67.93 Aligned_cols=64 Identities=23% Similarity=0.366 Sum_probs=54.9
Q ss_pred CCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECC-----------CCccHHHHhCCCcCCCCCCCCEEEE
Q 030433 63 TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLG-----------LFPNAAEKFGISLGGSMGQLPTYIL 131 (177)
Q Consensus 63 ~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~-----------~~~~~~~~~~v~~~~~~~~~Ptlii 131 (177)
..+.-+++||.+.|+.|..+.|.+..++++|+ +.+..|++| .+.+++++++|. .+|++++
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg---~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~------~~Pal~L 189 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYG---FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVK------VTPALFL 189 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC---CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCC------cCCEEEE
Confidence 34557999999999999999999999999996 777777776 457889999999 9999999
Q ss_pred EeCC
Q 030433 132 FENN 135 (177)
Q Consensus 132 ~~~G 135 (177)
+..+
T Consensus 190 v~~~ 193 (215)
T PF13728_consen 190 VNPN 193 (215)
T ss_pred EECC
Confidence 9543
No 142
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.38 E-value=2.8e-06 Score=65.72 Aligned_cols=78 Identities=10% Similarity=0.080 Sum_probs=55.4
Q ss_pred ceEEE-EEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCC---------------------------CccHHHHhC
Q 030433 65 RYWLV-EFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL---------------------------FPNAAEKFG 116 (177)
Q Consensus 65 ~~vlV-~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~---------------------------~~~~~~~~~ 116 (177)
+++++ .||++||+.|....+.+.+..++++..++.++.++.+. ...+++.|+
T Consensus 28 k~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~yg 107 (202)
T PRK13190 28 KWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREYN 107 (202)
T ss_pred CEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcC
Confidence 33554 68999999999999999999999887778888877652 124455666
Q ss_pred CCcCCCCCCCCEEEEE-eCCEEeeeec
Q 030433 117 ISLGGSMGQLPTYILF-ENNAEINRFP 142 (177)
Q Consensus 117 v~~~~~~~~~Ptlii~-~~G~~~~r~~ 142 (177)
+........+|+.+++ ++|++.....
T Consensus 108 v~~~~~g~~~p~~fiId~~G~I~~~~~ 134 (202)
T PRK13190 108 LIDENSGATVRGVFIIDPNQIVRWMIY 134 (202)
T ss_pred CccccCCcEEeEEEEECCCCEEEEEEE
Confidence 6321112258999999 5788776553
No 143
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=98.32 E-value=1.2e-05 Score=55.82 Aligned_cols=86 Identities=22% Similarity=0.244 Sum_probs=64.0
Q ss_pred ChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCc----cHHHHhCCCcCCCCCC
Q 030433 50 TPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP----NAAEKFGISLGGSMGQ 125 (177)
Q Consensus 50 ~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~v~~~~~~~~ 125 (177)
+.+++++.++. ...+|+++.=+++.||-+.+....+++..+..++ ++.++.+|+-+.. .++++++|.. .
T Consensus 6 t~eql~~i~~~-S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~-~~~~y~l~v~~~R~vSn~IAe~~~V~H-----e 78 (105)
T PF11009_consen 6 TEEQLEEILEE-SKEKPVLIFKHSTRCPISAMALREFEKFWEESPD-EIPVYYLDVIEYRPVSNAIAEDFGVKH-----E 78 (105)
T ss_dssp SHHHHHHHHHH----SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-----EEEEEGGGGHHHHHHHHHHHT---------
T ss_pred CHHHHHHHHHh-cccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc-cceEEEEEEEeCchhHHHHHHHhCCCc-----C
Confidence 45899999888 5567799999999999999999999999998773 4999999998775 5688999997 9
Q ss_pred CCEEEEEeCCEEeeeec
Q 030433 126 LPTYILFENNAEINRFP 142 (177)
Q Consensus 126 ~Ptlii~~~G~~~~r~~ 142 (177)
-|-+++++||+.+..-.
T Consensus 79 SPQ~ili~~g~~v~~aS 95 (105)
T PF11009_consen 79 SPQVILIKNGKVVWHAS 95 (105)
T ss_dssp SSEEEEEETTEEEEEEE
T ss_pred CCcEEEEECCEEEEECc
Confidence 99999999999988543
No 144
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1.7e-07 Score=72.65 Aligned_cols=81 Identities=16% Similarity=0.307 Sum_probs=72.3
Q ss_pred CceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEEEEeCCEEeeeecC
Q 030433 64 SRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEINRFPA 143 (177)
Q Consensus 64 ~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii~~~G~~~~r~~g 143 (177)
.+..+++||++||.+|..+...++.+++.. .++.+.+.+.++.++++..+.+. +.|+++.+..|+.+.+..|
T Consensus 17 ~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~--~~~~~~k~~a~~~~eis~~~~v~------~vp~~~~~~~~~~v~~l~~ 88 (227)
T KOG0911|consen 17 GKLLVLHFWAIWAVVQKQMDQVFDHLAEYF--KNAQFLKLEAEEFPEISNLIAVE------AVPYFVFFFLGEKVDRLSG 88 (227)
T ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHHhh--hhheeeeehhhhhhHHHHHHHHh------cCceeeeeecchhhhhhhc
Confidence 344999999999999999999999998876 67999999999999999999999 9999999999999999988
Q ss_pred CCCCCcccc
Q 030433 144 FGFEEKFSH 152 (177)
Q Consensus 144 ~~~~~~~~~ 152 (177)
.+.......
T Consensus 89 ~~~~~~~~~ 97 (227)
T KOG0911|consen 89 ADPPFLVSK 97 (227)
T ss_pred cCcHHHHHH
Confidence 877654433
No 145
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.30 E-value=5.9e-05 Score=54.05 Aligned_cols=102 Identities=13% Similarity=0.220 Sum_probs=75.4
Q ss_pred hhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEE
Q 030433 51 PLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYI 130 (177)
Q Consensus 51 ~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptli 130 (177)
+.+.++++.+ ...+.+++-|..+|-+.|.++...+.+.+++.+ +-..++.||+++.++..+-|++. .|..+
T Consensus 8 ~~~VDqAI~~-e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~-~~a~IY~vDi~~Vpdfn~~yel~-------dP~tv 78 (133)
T PF02966_consen 8 GWHVDQAILS-EEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVK-NFAVIYLVDIDEVPDFNQMYELY-------DPCTV 78 (133)
T ss_dssp HHHHHHHHHH--SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHT-TTEEEEEEETTTTHCCHHHTTS--------SSEEE
T ss_pred cchHHHHHhc-cCceEEEEEeCCCCCccHHHHHHHHHHHHHHhh-cceEEEEEEcccchhhhcccccC-------CCeEE
Confidence 4677777776 667789999999999999999999999999987 56778899999999999999997 78644
Q ss_pred EE-eCCEEeeeecCCCCCCcccccccchHhHh
Q 030433 131 LF-ENNAEINRFPAFGFEEKFSHPHITKKLIA 161 (177)
Q Consensus 131 i~-~~G~~~~r~~g~~~~~~~~~~~~~~~~~~ 161 (177)
+| =+|+-+.-=.|..+...+--..-++++++
T Consensus 79 mFF~rnkhm~vD~GtgnnnKin~~~~~kqe~i 110 (133)
T PF02966_consen 79 MFFFRNKHMMVDFGTGNNNKINWAFEDKQEFI 110 (133)
T ss_dssp EEEETTEEEEEESSSSSSSSBCS--SCHHHHH
T ss_pred EEEecCeEEEEEecCCCccEEEEEcCcHHHHH
Confidence 44 57776655556666655544444455443
No 146
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.27 E-value=4.4e-06 Score=68.71 Aligned_cols=109 Identities=14% Similarity=0.219 Sum_probs=75.4
Q ss_pred CCcccCCcceeecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHh------HHHHHHHH-HhCCCCcEEEEEECCCCc
Q 030433 37 QPVFQKLGISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRAS------RIFPELSI-AYSNKNVSFGIVDLGLFP 109 (177)
Q Consensus 37 ~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~------p~l~~~~~-~~~~~~~~~~~vd~~~~~ 109 (177)
-|.|.+...+..++..+|.+.+++ ..- .+|+||.+-- ..+... ...-++++ -....++.|+.||..+..
T Consensus 27 fP~YDGkDRVi~LneKNfk~~lKk-yd~--l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~ 102 (383)
T PF01216_consen 27 FPEYDGKDRVIDLNEKNFKRALKK-YDV--LVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDA 102 (383)
T ss_dssp SSS-SSS--CEEE-TTTHHHHHHH--SE--EEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTH
T ss_pred CccCCCccceEEcchhHHHHHHHh-hcE--EEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHH
Confidence 367888889999999999999988 443 7788888764 333332 22333333 345678999999999999
Q ss_pred cHHHHhCCCcCCCCCCCCEEEEEeCCEEeeeecCCCCCCcccccccc
Q 030433 110 NAAEKFGISLGGSMGQLPTYILFENNAEINRFPAFGFEEKFSHPHIT 156 (177)
Q Consensus 110 ~~~~~~~v~~~~~~~~~Ptlii~~~G~~~~r~~g~~~~~~~~~~~~~ 156 (177)
.++++.++. ..+++.+|++|+.+. +.|..+++.++.|...
T Consensus 103 klAKKLgv~------E~~SiyVfkd~~~IE-ydG~~saDtLVeFl~d 142 (383)
T PF01216_consen 103 KLAKKLGVE------EEGSIYVFKDGEVIE-YDGERSADTLVEFLLD 142 (383)
T ss_dssp HHHHHHT--------STTEEEEEETTEEEE-E-S--SHHHHHHHHHH
T ss_pred HHHHhcCcc------ccCcEEEEECCcEEE-ecCccCHHHHHHHHHH
Confidence 999999999 999999999999877 4599999888877654
No 147
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.25 E-value=7.6e-06 Score=63.34 Aligned_cols=81 Identities=12% Similarity=0.088 Sum_probs=58.8
Q ss_pred EEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCC---------------------------CccHHHHhCCCc
Q 030433 67 WLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL---------------------------FPNAAEKFGISL 119 (177)
Q Consensus 67 vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~---------------------------~~~~~~~~~v~~ 119 (177)
+++.||++||+.|....+.+.++.+++...++.++.++.+. ...+++.|++..
T Consensus 29 vlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~~ 108 (203)
T cd03016 29 ILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMID 108 (203)
T ss_pred EEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCcc
Confidence 56689999999999999999999999987788988887663 124566777652
Q ss_pred CC--CCCCCCEEEEE-eCCEEeeeecCCCCC
Q 030433 120 GG--SMGQLPTYILF-ENNAEINRFPAFGFE 147 (177)
Q Consensus 120 ~~--~~~~~Ptlii~-~~G~~~~r~~g~~~~ 147 (177)
.. .....|+.+++ ++|+......+..+.
T Consensus 109 ~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~ 139 (203)
T cd03016 109 PDAGSTLTVRAVFIIDPDKKIRLILYYPATT 139 (203)
T ss_pred ccCCCCceeeEEEEECCCCeEEEEEecCCCC
Confidence 21 11235667777 688888777665443
No 148
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.25 E-value=2.5e-06 Score=55.68 Aligned_cols=64 Identities=19% Similarity=0.365 Sum_probs=47.0
Q ss_pred EecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEEEEeCCEEeeeecC-CCCCC
Q 030433 71 FRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEINRFPA-FGFEE 148 (177)
Q Consensus 71 F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii~~~G~~~~r~~g-~~~~~ 148 (177)
+++++|+.|..+...++++.+.++ ++.-.+|....+++ .+|++. ++|++++ ||+. ++.| ..+.+
T Consensus 5 v~~~~C~~C~~~~~~~~~~~~~~~---i~~ei~~~~~~~~~-~~ygv~------~vPalvI--ng~~--~~~G~~p~~~ 69 (76)
T PF13192_consen 5 VFSPGCPYCPELVQLLKEAAEELG---IEVEIIDIEDFEEI-EKYGVM------SVPALVI--NGKV--VFVGRVPSKE 69 (76)
T ss_dssp EECSSCTTHHHHHHHHHHHHHHTT---EEEEEEETTTHHHH-HHTT-S------SSSEEEE--TTEE--EEESS--HHH
T ss_pred EeCCCCCCcHHHHHHHHHHHHhcC---CeEEEEEccCHHHH-HHcCCC------CCCEEEE--CCEE--EEEecCCCHH
Confidence 367789999999999999998874 66666777555555 999999 9999955 6773 4667 44333
No 149
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.24 E-value=2.2e-06 Score=65.39 Aligned_cols=44 Identities=7% Similarity=-0.047 Sum_probs=38.4
Q ss_pred CCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECC
Q 030433 62 KTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLG 106 (177)
Q Consensus 62 ~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~ 106 (177)
-++++++|.|||+||+.|+ ..|.++++.++|++.++.++.+.++
T Consensus 23 ~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 23 YAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred hCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeecc
Confidence 3456699999999999997 5899999999999888999999875
No 150
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.24 E-value=8e-06 Score=63.88 Aligned_cols=76 Identities=9% Similarity=0.124 Sum_probs=56.2
Q ss_pred EEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCC---------------------------ccHHHHhCCCc
Q 030433 67 WLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF---------------------------PNAAEKFGISL 119 (177)
Q Consensus 67 vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~---------------------------~~~~~~~~v~~ 119 (177)
+++.||++|||.|..+.+.+.++.+++...++.++.++.+.. ..+++.|++..
T Consensus 32 VL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~~ 111 (215)
T PRK13599 32 VLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMIH 111 (215)
T ss_pred EEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCCc
Confidence 467999999999999999999999999877888888877631 23456666531
Q ss_pred CC-CCCCCCEEEEE-eCCEEeeeec
Q 030433 120 GG-SMGQLPTYILF-ENNAEINRFP 142 (177)
Q Consensus 120 ~~-~~~~~Ptlii~-~~G~~~~r~~ 142 (177)
.. +....|+.+++ ++|+......
T Consensus 112 ~~~~~~~~R~tfIID~dG~Ir~~~~ 136 (215)
T PRK13599 112 PGKGTNTVRAVFIVDDKGTIRLIMY 136 (215)
T ss_pred cCCCCceeeEEEEECCCCEEEEEEE
Confidence 11 11257998888 5788877654
No 151
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.19 E-value=1.2e-05 Score=53.52 Aligned_cols=63 Identities=19% Similarity=0.371 Sum_probs=48.0
Q ss_pred EEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCc----cHHHHhC--CCcCCCCCCCCEEEEEeCCEEee
Q 030433 67 WLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP----NAAEKFG--ISLGGSMGQLPTYILFENNAEIN 139 (177)
Q Consensus 67 vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~--v~~~~~~~~~Ptlii~~~G~~~~ 139 (177)
-++.|+.+||+.|++..+.++++..++ .++.+..+|+++++ ++.+..+ +. .+|+++ .+|+.+.
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~--~~i~~~~idi~~~~~~~~el~~~~~~~~~------~vP~if--i~g~~ig 70 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEER--DDFDYRYVDIHAEGISKADLEKTVGKPVE------TVPQIF--VDQKHIG 70 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccc--cCCcEEEEECCCChHHHHHHHHHHCCCCC------cCCEEE--ECCEEEc
Confidence 467899999999999999999998775 35888899988754 3444444 35 799965 5787654
No 152
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.18 E-value=1.4e-05 Score=50.57 Aligned_cols=51 Identities=22% Similarity=0.453 Sum_probs=39.0
Q ss_pred EEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHh----CCCcCCCCCCCCEEEE
Q 030433 68 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKF----GISLGGSMGQLPTYIL 131 (177)
Q Consensus 68 lV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~----~v~~~~~~~~~Ptlii 131 (177)
++.|+++||++|.++.+.+.+ .++.+..+|++..+...+.+ ++. ++|++++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~~i~~~~~~i~~~~~~~~~~~~~~~~~------~vP~i~~ 56 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------RGIPFEEVDVDEDPEALEELKKLNGYR------SVPVVVI 56 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------CCCCeEEEeCCCCHHHHHHHHHHcCCc------ccCEEEE
Confidence 467999999999999888865 24777788888776655544 466 8999875
No 153
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.17 E-value=1.8e-05 Score=63.58 Aligned_cols=79 Identities=14% Similarity=0.087 Sum_probs=57.9
Q ss_pred CceEEEEEe-cCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCC----------------------------CccHHHH
Q 030433 64 SRYWLVEFR-AQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL----------------------------FPNAAEK 114 (177)
Q Consensus 64 ~~~vlV~F~-a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~----------------------------~~~~~~~ 114 (177)
++++++.|| ++||+.|..+.+.+.+..+++...+++++.++.+. +..+++.
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iaka 177 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKS 177 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHH
Confidence 345778877 89999999999999999999987778888877653 1245667
Q ss_pred hCCCcCCCCCCCCEEEEE-eCCEEeeeecC
Q 030433 115 FGISLGGSMGQLPTYILF-ENNAEINRFPA 143 (177)
Q Consensus 115 ~~v~~~~~~~~~Ptlii~-~~G~~~~r~~g 143 (177)
|++... .....|+.+++ ++|++......
T Consensus 178 yGv~~~-~g~a~R~tFIID~dG~I~~~~~~ 206 (261)
T PTZ00137 178 FGLLRD-EGFSHRASVLVDKAGVVKHVAVY 206 (261)
T ss_pred cCCCCc-CCceecEEEEECCCCEEEEEEEe
Confidence 776421 11247988888 48888776643
No 154
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.11 E-value=2.4e-05 Score=61.22 Aligned_cols=82 Identities=10% Similarity=0.035 Sum_probs=58.1
Q ss_pred EEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCC---------------------------ccHHHHhCCCc
Q 030433 67 WLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF---------------------------PNAAEKFGISL 119 (177)
Q Consensus 67 vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~---------------------------~~~~~~~~v~~ 119 (177)
+++.||++||+.|..+.+.+.+..+++...|+.++.++++.. ..++++|++-.
T Consensus 37 vLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~~ 116 (215)
T PRK13191 37 VLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRLGMIH 116 (215)
T ss_pred EEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHcCCcc
Confidence 445889999999999999999999999877888888887632 23455666531
Q ss_pred CC-CCCCCCEEEEE-eCCEEeeeecCCCCCC
Q 030433 120 GG-SMGQLPTYILF-ENNAEINRFPAFGFEE 148 (177)
Q Consensus 120 ~~-~~~~~Ptlii~-~~G~~~~r~~g~~~~~ 148 (177)
.. .....|+.+++ .+|++.....+..+.+
T Consensus 117 ~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~g 147 (215)
T PRK13191 117 AESSTATVRAVFIVDDKGTVRLILYYPMEIG 147 (215)
T ss_pred cccCCceeEEEEEECCCCEEEEEEecCCCCC
Confidence 11 12257888888 5788877765554433
No 155
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.10 E-value=3.5e-05 Score=47.65 Aligned_cols=55 Identities=20% Similarity=0.369 Sum_probs=42.6
Q ss_pred EEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHH----hCCCcCCCCCCCCEEEEEeCCEE
Q 030433 68 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEK----FGISLGGSMGQLPTYILFENNAE 137 (177)
Q Consensus 68 lV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~----~~v~~~~~~~~~Ptlii~~~G~~ 137 (177)
++.|+.+|||.|+..+..|++ .++++-.+|++..+...+. .+.. ++|++++ +|+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~-------~~i~y~~~dv~~~~~~~~~l~~~~g~~------~~P~v~i--~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE-------KGIPYEEVDVDEDEEAREELKELSGVR------TVPQVFI--DGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH-------TTBEEEEEEGGGSHHHHHHHHHHHSSS------SSSEEEE--TTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHH-------cCCeeeEcccccchhHHHHHHHHcCCC------ccCEEEE--CCEE
Confidence 477999999999999999844 3488888999887544333 4888 8999886 6664
No 156
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.08 E-value=2.2e-05 Score=62.90 Aligned_cols=61 Identities=16% Similarity=0.255 Sum_probs=52.2
Q ss_pred ceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCC-----------ccHHHHhCCCcCCCCCCCCEEEEEe
Q 030433 65 RYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF-----------PNAAEKFGISLGGSMGQLPTYILFE 133 (177)
Q Consensus 65 ~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~-----------~~~~~~~~v~~~~~~~~~Ptlii~~ 133 (177)
+.-+++||.+.|+.|..+.|.+..++++|+ +.+..|++|.. ...++++++. .+|++++..
T Consensus 151 ~~gL~fFy~~~C~~C~~~apil~~fa~~yg---i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~------~~Pal~Lv~ 221 (256)
T TIGR02739 151 SYGLFFFYRGKSPISQKMAPVIQAFAKEYG---ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVK------YFPALYLVN 221 (256)
T ss_pred ceeEEEEECCCCchhHHHHHHHHHHHHHhC---CeEEEEecCCCCCCCCCCccCChHHHHhcCCc------cCceEEEEE
Confidence 347999999999999999999999999997 77777777644 4578899999 899999995
Q ss_pred C
Q 030433 134 N 134 (177)
Q Consensus 134 ~ 134 (177)
.
T Consensus 222 ~ 222 (256)
T TIGR02739 222 P 222 (256)
T ss_pred C
Confidence 4
No 157
>PRK13189 peroxiredoxin; Provisional
Probab=98.06 E-value=3.9e-05 Score=60.28 Aligned_cols=80 Identities=11% Similarity=0.061 Sum_probs=57.5
Q ss_pred EEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCC---------------------------CccHHHHhCCCc
Q 030433 67 WLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL---------------------------FPNAAEKFGISL 119 (177)
Q Consensus 67 vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~---------------------------~~~~~~~~~v~~ 119 (177)
+++.||++||+.|..+.+.+.+..+++...++.++.++.+. ...+++.|++..
T Consensus 39 vL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~ 118 (222)
T PRK13189 39 VLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMIS 118 (222)
T ss_pred EEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCCCc
Confidence 55678899999999999999999999987778888877652 124566777652
Q ss_pred CCC-CCCCCEEEEE-eCCEEeeeecCCCC
Q 030433 120 GGS-MGQLPTYILF-ENNAEINRFPAFGF 146 (177)
Q Consensus 120 ~~~-~~~~Ptlii~-~~G~~~~r~~g~~~ 146 (177)
... ...+|+.+++ ++|+......+..+
T Consensus 119 ~~~~~~~~r~tfIID~~G~Ir~~~~~~~~ 147 (222)
T PRK13189 119 PGKGTNTVRAVFIIDPKGIIRAILYYPQE 147 (222)
T ss_pred cccCCCceeEEEEECCCCeEEEEEecCCC
Confidence 221 2367888888 57887766654443
No 158
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.05 E-value=4.1e-05 Score=58.98 Aligned_cols=83 Identities=7% Similarity=0.004 Sum_probs=58.8
Q ss_pred CceEEEEEec-CCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCC----------------------------ccHHHH
Q 030433 64 SRYWLVEFRA-QCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF----------------------------PNAAEK 114 (177)
Q Consensus 64 ~~~vlV~F~a-~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~----------------------------~~~~~~ 114 (177)
+++++|+||+ +||+.|....+.+.++.+++...++.++.|+.+.. ..+++.
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ 115 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIARS 115 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHHH
Confidence 4568999994 88999999999999999999888899999887622 134555
Q ss_pred hCCCcCCCCCCCCEEEEE-eCCEEeeeecCCCC
Q 030433 115 FGISLGGSMGQLPTYILF-ENNAEINRFPAFGF 146 (177)
Q Consensus 115 ~~v~~~~~~~~~Ptlii~-~~G~~~~r~~g~~~ 146 (177)
|++.........|+.+++ ++|+......+..+
T Consensus 116 ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~ 148 (199)
T PTZ00253 116 YGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMP 148 (199)
T ss_pred cCCcccCCCceEEEEEEECCCCEEEEEEecCCC
Confidence 665321111235777777 57887776655444
No 159
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=98.01 E-value=1.8e-05 Score=61.15 Aligned_cols=90 Identities=18% Similarity=0.278 Sum_probs=76.7
Q ss_pred ceeecC-hhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCC
Q 030433 45 ISNKLT-PLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSM 123 (177)
Q Consensus 45 ~~~~l~-~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~ 123 (177)
.+-+++ +++|.+.+....+.-+++|+.|-+.-+.|..+...+..++++|+. ++|+++- ..+....++|..+
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~--vKFckik-ss~~gas~~F~~n----- 210 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI--VKFCKIK-SSNTGASDRFSLN----- 210 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc--eeEEEee-eccccchhhhccc-----
Confidence 345555 589988888745666789999999999999999999999999974 9999995 5677888999999
Q ss_pred CCCCEEEEEeCCEEeeeecC
Q 030433 124 GQLPTYILFENNAEINRFPA 143 (177)
Q Consensus 124 ~~~Ptlii~~~G~~~~r~~g 143 (177)
++||+++|++|+.++.++.
T Consensus 211 -~lP~LliYkgGeLIgNFv~ 229 (273)
T KOG3171|consen 211 -VLPTLLIYKGGELIGNFVS 229 (273)
T ss_pred -CCceEEEeeCCchhHHHHH
Confidence 9999999999999886653
No 160
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.94 E-value=5.3e-05 Score=49.48 Aligned_cols=59 Identities=22% Similarity=0.247 Sum_probs=42.9
Q ss_pred EEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCc-----cHHHHhCCCcCCCCCCCCEEEEEeCCEEee
Q 030433 68 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP-----NAAEKFGISLGGSMGQLPTYILFENNAEIN 139 (177)
Q Consensus 68 lV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~-----~~~~~~~v~~~~~~~~~Ptlii~~~G~~~~ 139 (177)
++.|+++|||.|+.+.+.+++... .+.++.+|.++.. .+.+..+.. ++|++ |-+|+.+.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~g~~------~~P~v--~~~g~~ig 65 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-----KPAVVELDQHEDGSEIQDYLQELTGQR------TVPNV--FIGGKFIG 65 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-----CcEEEEEeCCCChHHHHHHHHHHhCCC------CCCeE--EECCEEEc
Confidence 477999999999999999988654 3567777766552 234455777 89996 56777644
No 161
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.91 E-value=6.3e-05 Score=59.95 Aligned_cols=74 Identities=15% Similarity=0.173 Sum_probs=55.1
Q ss_pred eEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCC-----------CccHHHHhCCCcCCCCCCCCEEEEEeC
Q 030433 66 YWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL-----------FPNAAEKFGISLGGSMGQLPTYILFEN 134 (177)
Q Consensus 66 ~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~-----------~~~~~~~~~v~~~~~~~~~Ptlii~~~ 134 (177)
.-+++||.+.|+.|..+.|.+..++++|+ +.+..|++|- +...++++++. .+|++++++.
T Consensus 145 ~GL~fFy~s~Cp~C~~~aPil~~fa~~yg---~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~------~~PAl~Lv~~ 215 (248)
T PRK13703 145 YGLMFFYRGQDPIDGQLAQVINDFRDTYG---LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVK------YFPALMLVDP 215 (248)
T ss_pred ceEEEEECCCCchhHHHHHHHHHHHHHhC---CeEEEEecCCCCCCCCCCCccChhHHHhcCCc------ccceEEEEEC
Confidence 47999999999999999999999999997 6666666652 23467789999 8999999944
Q ss_pred C--EEeeeecCCCCCC
Q 030433 135 N--AEINRFPAFGFEE 148 (177)
Q Consensus 135 G--~~~~r~~g~~~~~ 148 (177)
+ +..--..|..+.+
T Consensus 216 ~t~~~~pv~~G~iS~d 231 (248)
T PRK13703 216 KSGSVRPLSYGFITQD 231 (248)
T ss_pred CCCcEEEEeeccCCHH
Confidence 3 3322233554433
No 162
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.84 E-value=0.00012 Score=45.87 Aligned_cols=57 Identities=26% Similarity=0.389 Sum_probs=41.9
Q ss_pred EEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHH----hCCCcCCCCCCCCEEEEEeCCEEee
Q 030433 68 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEK----FGISLGGSMGQLPTYILFENNAEIN 139 (177)
Q Consensus 68 lV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~----~~v~~~~~~~~~Ptlii~~~G~~~~ 139 (177)
++.|+++||+.|+...+.+++. ++.+..+|++++++..+. .+.. .+|++ +.+|+.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~-------~i~~~~~di~~~~~~~~~l~~~~~~~------~~P~~--~~~~~~ig 62 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL-------GIEFEEIDILEDGELREELKELSGWP------TVPQI--FINGEFIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------CCcEEEEECCCCHHHHHHHHHHhCCC------CcCEE--EECCEEEe
Confidence 4678999999999999999764 266778888877654333 3555 78876 45787665
No 163
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.81 E-value=5.9e-05 Score=52.53 Aligned_cols=91 Identities=19% Similarity=0.214 Sum_probs=67.6
Q ss_pred ceeecChhHHHHHHhcCCCCceEEEEEecCCChhhH---HHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCC
Q 030433 45 ISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCI---RASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGG 121 (177)
Q Consensus 45 ~~~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~---~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~ 121 (177)
....++.+++++.+.. .. ..|.|.+..|..+. ...=.+.++.+.++ ..+....++-.....+..+|++.
T Consensus 10 g~~~vd~~~ld~~l~~-~~---~~vlf~~gDp~r~~E~~DvaVILPEL~~af~-~~~~~avv~~~~e~~L~~r~gv~--- 81 (107)
T PF07449_consen 10 GWPRVDADTLDAFLAA-PG---DAVLFFAGDPARFPETADVAVILPELVKAFP-GRFRGAVVARAAERALAARFGVR--- 81 (107)
T ss_dssp TEEEE-CCCHHHHHHC-CS---CEEEEESS-TTTSTTCCHHHHHHHHHHCTST-TSEEEEEEEHHHHHHHHHHHT-T---
T ss_pred CCeeechhhHHHHHhC-CC---cEEEEECCCCCcCcccccceeEcHHHHHhhh-CccceEEECchhHHHHHHHhCCc---
Confidence 4567777888888887 54 34455555554444 44457889988887 55677777767788999999999
Q ss_pred CCCCCCEEEEEeCCEEeeeecCCCC
Q 030433 122 SMGQLPTYILFENNAEINRFPAFGF 146 (177)
Q Consensus 122 ~~~~~Ptlii~~~G~~~~r~~g~~~ 146 (177)
..|+++++++|+.++.+.|..+
T Consensus 82 ---~~PaLvf~R~g~~lG~i~gi~d 103 (107)
T PF07449_consen 82 ---RWPALVFFRDGRYLGAIEGIRD 103 (107)
T ss_dssp ---SSSEEEEEETTEEEEEEESSST
T ss_pred ---cCCeEEEEECCEEEEEecCeec
Confidence 9999999999999999988754
No 164
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.78 E-value=0.00016 Score=51.13 Aligned_cols=81 Identities=11% Similarity=0.142 Sum_probs=59.8
Q ss_pred CCCceEEEEEecC----CChhhHHHh--HHHHHHHHHhCCCCcEEEEEECCCC--ccHHHHhCCCcCCCCCCCCEEEEE-
Q 030433 62 KTSRYWLVEFRAQ----CSSTCIRAS--RIFPELSIAYSNKNVSFGIVDLGLF--PNAAEKFGISLGGSMGQLPTYILF- 132 (177)
Q Consensus 62 ~~~~~vlV~F~a~----wC~~C~~~~--p~l~~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~~~~~~~Ptlii~- 132 (177)
.++|+++|++|++ ||..|+... |.+.+.. + .++.+...|++.. ..++..+++. ++|++.++
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~l---n-~~fv~w~~dv~~~eg~~la~~l~~~------~~P~~~~l~ 84 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYI---N-TRMLFWACSVAKPEGYRVSQALRER------TYPFLAMIM 84 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHH---H-cCEEEEEEecCChHHHHHHHHhCCC------CCCEEEEEE
Confidence 4456699999999 899997664 4444443 3 4688888888754 4578889999 99999998
Q ss_pred -eC--CEEeeeecCCCCCCcccc
Q 030433 133 -EN--NAEINRFPAFGFEEKFSH 152 (177)
Q Consensus 133 -~~--G~~~~r~~g~~~~~~~~~ 152 (177)
++ .+.+.|+.|..+.+++..
T Consensus 85 ~~~~~~~vv~~i~G~~~~~~ll~ 107 (116)
T cd02991 85 LKDNRMTIVGRLEGLIQPEDLIN 107 (116)
T ss_pred ecCCceEEEEEEeCCCCHHHHHH
Confidence 23 456889999887665543
No 165
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.77 E-value=0.00011 Score=48.96 Aligned_cols=61 Identities=18% Similarity=0.376 Sum_probs=44.1
Q ss_pred EEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCc----cHHHHhCC--CcCCCCCCCCEEEEEeCCEEe
Q 030433 68 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP----NAAEKFGI--SLGGSMGQLPTYILFENNAEI 138 (177)
Q Consensus 68 lV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~v--~~~~~~~~~Ptlii~~~G~~~ 138 (177)
++.|..+|||.|.+....|+++..++. ++.+..+|++... ++.+..+- . .+|.++ -+|+.+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~--~i~~~~idi~~~~~~~~~l~~~~g~~~~------tVP~if--i~g~~i 68 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA--DFEFRYIDIHAEGISKADLEKTVGKPVE------TVPQIF--VDEKHV 68 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC--CCcEEEEECCCCHHHHHHHHHHhCCCCC------CcCeEE--ECCEEe
Confidence 577999999999999999988766543 4778788887543 34444442 4 799984 467654
No 166
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.76 E-value=0.00013 Score=64.59 Aligned_cols=73 Identities=14% Similarity=0.287 Sum_probs=59.8
Q ss_pred EEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEEEEeCCEEeeeecCCCCC
Q 030433 68 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEINRFPAFGFE 147 (177)
Q Consensus 68 lV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii~~~G~~~~r~~g~~~~ 147 (177)
+-.|.+++|++|......+++++.+.+ ++..-.+|....++++++|+|. ++|++++ ||+.. +.|..+.
T Consensus 480 i~v~~~~~C~~Cp~~~~~~~~~~~~~~--~i~~~~i~~~~~~~~~~~~~v~------~vP~~~i--~~~~~--~~G~~~~ 547 (555)
T TIGR03143 480 IKIGVSLSCTLCPDVVLAAQRIASLNP--NVEAEMIDVSHFPDLKDEYGIM------SVPAIVV--DDQQV--YFGKKTI 547 (555)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCC--CceEEEEECcccHHHHHhCCce------ecCEEEE--CCEEE--EeeCCCH
Confidence 455689999999999999999988764 6999999999999999999999 9999887 56543 4476665
Q ss_pred Ccccc
Q 030433 148 EKFSH 152 (177)
Q Consensus 148 ~~~~~ 152 (177)
+++..
T Consensus 548 ~~~~~ 552 (555)
T TIGR03143 548 EEMLE 552 (555)
T ss_pred HHHHH
Confidence 55544
No 167
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00027 Score=57.54 Aligned_cols=87 Identities=15% Similarity=0.286 Sum_probs=69.1
Q ss_pred CcceeecChhHHHHHHhcCCCCceEEEEEec----CCChhhHHHhHHHHHHHHHhCC-----C--CcEEEEEECCCCccH
Q 030433 43 LGISNKLTPLQLEALLTEGKTSRYWLVEFRA----QCSSTCIRASRIFPELSIAYSN-----K--NVSFGIVDLGLFPNA 111 (177)
Q Consensus 43 ~~~~~~l~~~~~~~~l~~~~~~~~vlV~F~a----~wC~~C~~~~p~l~~~~~~~~~-----~--~~~~~~vd~~~~~~~ 111 (177)
+..+-.++++.|...+..+.++=..++-|.| ..|+-|+.+...+.-+++.+.. + ++=|..||.++.++.
T Consensus 39 ~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~ 118 (331)
T KOG2603|consen 39 ESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQV 118 (331)
T ss_pred CCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHH
Confidence 4457778889998888764444446777776 5799999999999888886531 1 456899999999999
Q ss_pred HHHhCCCcCCCCCCCCEEEEEeCC
Q 030433 112 AEKFGISLGGSMGQLPTYILFENN 135 (177)
Q Consensus 112 ~~~~~v~~~~~~~~~Ptlii~~~G 135 (177)
.+.++++ .+|++++|+..
T Consensus 119 Fq~l~ln------~~P~l~~f~P~ 136 (331)
T KOG2603|consen 119 FQQLNLN------NVPHLVLFSPA 136 (331)
T ss_pred HHHhccc------CCCeEEEeCCC
Confidence 9999999 99999999543
No 168
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.73 E-value=0.00026 Score=46.36 Aligned_cols=58 Identities=21% Similarity=0.260 Sum_probs=42.1
Q ss_pred EEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCcc---HHHHhCCCcCCCCCCCCEEEEEeCCEEee
Q 030433 67 WLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPN---AAEKFGISLGGSMGQLPTYILFENNAEIN 139 (177)
Q Consensus 67 vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~v~~~~~~~~~Ptlii~~~G~~~~ 139 (177)
-++.|+.+||+.|++.+..|++ .++.+-.+|++++.. +.+..+.. .+|.+. -+|+.+.
T Consensus 9 ~V~ly~~~~Cp~C~~ak~~L~~-------~gi~y~~idi~~~~~~~~~~~~~g~~------~vP~i~--i~g~~ig 69 (79)
T TIGR02190 9 SVVVFTKPGCPFCAKAKATLKE-------KGYDFEEIPLGNDARGRSLRAVTGAT------TVPQVF--IGGKLIG 69 (79)
T ss_pred CEEEEECCCCHhHHHHHHHHHH-------cCCCcEEEECCCChHHHHHHHHHCCC------CcCeEE--ECCEEEc
Confidence 5678999999999999999964 246777788876633 33344666 899985 3777543
No 169
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.63 E-value=0.00026 Score=45.45 Aligned_cols=50 Identities=16% Similarity=0.395 Sum_probs=39.7
Q ss_pred EEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHh---CCCcCCCCCCCCEEEE
Q 030433 69 VEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKF---GISLGGSMGQLPTYIL 131 (177)
Q Consensus 69 V~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~---~v~~~~~~~~~Ptlii 131 (177)
..|..++||.|+..+..|++ .++.+-.+|+++++...+.+ +.. ++|++++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~~di~~~~~~~~~~~~~g~~------~vP~v~~ 54 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------HGIAFEEINIDEQPEAIDYVKAQGFR------QVPVIVA 54 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CCCceEEEECCCCHHHHHHHHHcCCc------ccCEEEE
Confidence 46888999999999999964 35788889999888776666 555 8999744
No 170
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.57 E-value=0.0004 Score=45.18 Aligned_cols=56 Identities=18% Similarity=0.386 Sum_probs=40.5
Q ss_pred EEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHh----CCCcCCCCCCCCEEEEEeCCEEee
Q 030433 69 VEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKF----GISLGGSMGQLPTYILFENNAEIN 139 (177)
Q Consensus 69 V~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~----~v~~~~~~~~~Ptlii~~~G~~~~ 139 (177)
..|+.+|||.|......+++ .++.+-.+|+++++...+++ +.. ++|++ +-+|+.+.
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~-------~~i~~~~~di~~~~~~~~~~~~~~g~~------~vP~i--~i~g~~ig 61 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSS-------KGVTFTEIRVDGDPALRDEMMQRSGRR------TVPQI--FIGDVHVG 61 (79)
T ss_pred EEEecCCChhHHHHHHHHHH-------cCCCcEEEEecCCHHHHHHHHHHhCCC------CcCEE--EECCEEEc
Confidence 56889999999999999975 23667777888776554444 455 89996 55676543
No 171
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.56 E-value=0.00036 Score=46.11 Aligned_cols=54 Identities=20% Similarity=0.418 Sum_probs=39.9
Q ss_pred EEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEEE
Q 030433 68 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYIL 131 (177)
Q Consensus 68 lV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii 131 (177)
+..|..+||+.|...+..|++ .++.|-.+|++++++....+... +.+.+|++++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-------~gI~~~~idi~~~~~~~~~~~~~---g~~~vPvv~i 56 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-------RGFDFEMINVDRVPEAAETLRAQ---GFRQLPVVIA 56 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------CCCceEEEECCCCHHHHHHHHHc---CCCCcCEEEE
Confidence 567889999999999998854 45888899999887655433221 2228999865
No 172
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.53 E-value=0.00016 Score=47.73 Aligned_cols=77 Identities=17% Similarity=0.221 Sum_probs=55.2
Q ss_pred EEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEEEEeCCEEeeeecCCCCC
Q 030433 68 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEINRFPAFGFE 147 (177)
Q Consensus 68 lV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii~~~G~~~~r~~g~~~~ 147 (177)
++.|..+.|+-|......+.++....+ +.+..+|+++++.+..+|+.. +|.+.+-..++. ..
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~---~~l~~vDI~~d~~l~~~Y~~~-------IPVl~~~~~~~~--------~~ 63 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP---FELEEVDIDEDPELFEKYGYR-------IPVLHIDGIRQF--------KE 63 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST---CEEEEEETTTTHHHHHHSCTS-------TSEEEETT-GGG--------CT
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC---ceEEEEECCCCHHHHHHhcCC-------CCEEEEcCcccc--------cc
Confidence 678999999999999999988766543 999999999999999999987 998655432111 11
Q ss_pred CcccccccchHhHhh
Q 030433 148 EKFSHPHITKKLIAH 162 (177)
Q Consensus 148 ~~~~~~~~~~~~~~~ 162 (177)
....+|.++++.+.+
T Consensus 64 ~~~~~~~~d~~~L~~ 78 (81)
T PF05768_consen 64 QEELKWRFDEEQLRA 78 (81)
T ss_dssp SEEEESSB-HHHHHH
T ss_pred cceeCCCCCHHHHHH
Confidence 444555566655543
No 173
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.51 E-value=0.00034 Score=53.67 Aligned_cols=74 Identities=9% Similarity=0.148 Sum_probs=50.7
Q ss_pred CCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEE------------------------------------------
Q 030433 63 TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSF------------------------------------------ 100 (177)
Q Consensus 63 ~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~------------------------------------------ 100 (177)
..+..++.|..+.||+|+++.+.+.+.. .++.+
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~~~-----~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~ 150 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKPNA-----DGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPP 150 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhhcc-----CceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCC
Confidence 3456999999999999999999887511 11222
Q ss_pred ---EEEECCCCccHHHHhCCCcCCCCCCCCEEEEEeCCEEeeeecCCCCCCccc
Q 030433 101 ---GIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEINRFPAFGFEEKFS 151 (177)
Q Consensus 101 ---~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii~~~G~~~~r~~g~~~~~~~~ 151 (177)
...+++++..++++++++ ++|+++ +++|+. +.|..+.+++.
T Consensus 151 ~~~~~~~i~~~~~l~~~~gi~------gtPtii-~~~G~~---~~G~~~~~~l~ 194 (197)
T cd03020 151 AASCDNPVAANLALGRQLGVN------GTPTIV-LADGRV---VPGAPPAAQLE 194 (197)
T ss_pred ccccCchHHHHHHHHHHcCCC------cccEEE-ECCCeE---ecCCCCHHHHH
Confidence 222233344677888999 999997 888886 45776554443
No 174
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.47 E-value=0.00018 Score=56.86 Aligned_cols=77 Identities=10% Similarity=0.256 Sum_probs=54.4
Q ss_pred CCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEE--------------------------------------
Q 030433 62 KTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIV-------------------------------------- 103 (177)
Q Consensus 62 ~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v-------------------------------------- 103 (177)
.+++..++.|.-+.||.|+++.+.++++.+ .++.+..+
T Consensus 105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~ 180 (232)
T PRK10877 105 PQEKHVITVFTDITCGYCHKLHEQMKDYNA----LGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVS 180 (232)
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHHhc----CCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCC
Confidence 345568999999999999999999887643 12222222
Q ss_pred ------ECCCCccHHHHhCCCcCCCCCCCCEEEEEeCCEEeeeecCCCCCCcccc
Q 030433 104 ------DLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEINRFPAFGFEEKFSH 152 (177)
Q Consensus 104 ------d~~~~~~~~~~~~v~~~~~~~~~Ptlii~~~G~~~~r~~g~~~~~~~~~ 152 (177)
+++++..++++++|+ ++||++ +.||+.+ .|..+.+++..
T Consensus 181 ~~~c~~~v~~~~~la~~lgi~------gTPtiv-~~~G~~~---~G~~~~~~L~~ 225 (232)
T PRK10877 181 PASCDVDIADHYALGVQFGVQ------GTPAIV-LSNGTLV---PGYQGPKEMKA 225 (232)
T ss_pred cccccchHHHhHHHHHHcCCc------cccEEE-EcCCeEe---eCCCCHHHHHH
Confidence 222344677888999 999998 7889865 68876665544
No 175
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.46 E-value=0.0011 Score=42.43 Aligned_cols=57 Identities=18% Similarity=0.384 Sum_probs=41.9
Q ss_pred EEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHH----hCCCcCCCCCCCCEEEEEeCCEEee
Q 030433 68 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEK----FGISLGGSMGQLPTYILFENNAEIN 139 (177)
Q Consensus 68 lV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~----~~v~~~~~~~~~Ptlii~~~G~~~~ 139 (177)
++.|+.+||+.|++....|++ .++++-.+|+++.+...+. .+-. .+|++ +-+|+.++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-------~gi~~~~~di~~~~~~~~el~~~~g~~------~vP~v--~i~~~~iG 63 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-------KGLPYVEINIDIFPERKAELEERTGSS------VVPQI--FFNEKLVG 63 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-------CCCceEEEECCCCHHHHHHHHHHhCCC------CcCEE--EECCEEEe
Confidence 567899999999999999975 3477778898887654333 3445 78887 55676555
No 176
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.45 E-value=0.00085 Score=58.88 Aligned_cols=72 Identities=18% Similarity=0.261 Sum_probs=59.0
Q ss_pred EEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEEEEeCCEEeeeecCCCC
Q 030433 67 WLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEINRFPAFGF 146 (177)
Q Consensus 67 vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii~~~G~~~~r~~g~~~ 146 (177)
-+-.|.+++||+|......+++++... +++..-.+|..++++++++|++. ++|++++ ||+.. +.|..+
T Consensus 119 ~i~~fv~~~Cp~Cp~~v~~~~~~a~~~--~~i~~~~id~~~~~~~~~~~~v~------~VP~~~i--~~~~~--~~g~~~ 186 (517)
T PRK15317 119 HFETYVSLSCHNCPDVVQALNLMAVLN--PNITHTMIDGALFQDEVEARNIM------AVPTVFL--NGEEF--GQGRMT 186 (517)
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHhC--CCceEEEEEchhCHhHHHhcCCc------ccCEEEE--CCcEE--EecCCC
Confidence 478899999999999999999998864 46999999999999999999999 9999975 55533 446555
Q ss_pred CCcc
Q 030433 147 EEKF 150 (177)
Q Consensus 147 ~~~~ 150 (177)
.+++
T Consensus 187 ~~~~ 190 (517)
T PRK15317 187 LEEI 190 (517)
T ss_pred HHHH
Confidence 4433
No 177
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.43 E-value=0.0009 Score=51.38 Aligned_cols=92 Identities=14% Similarity=0.175 Sum_probs=72.9
Q ss_pred cceeecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCC
Q 030433 44 GISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSM 123 (177)
Q Consensus 44 ~~~~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~ 123 (177)
+.+..+++..+...+...+.+..|+|+.|...-|.|..+...++.++-+|+. ++|+++-.+.... .|.-+
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~--iKFVki~at~cIp---NYPe~----- 160 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ--IKFVKIPATTCIP---NYPES----- 160 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc--ceEEecccccccC---CCccc-----
Confidence 4688899988866665547788899999999999999999999999999974 8998875443321 24444
Q ss_pred CCCCEEEEEeCCEEeeeecCCCC
Q 030433 124 GQLPTYILFENNAEINRFPAFGF 146 (177)
Q Consensus 124 ~~~Ptlii~~~G~~~~r~~g~~~ 146 (177)
..||+++|..|.....+.|...
T Consensus 161 -nlPTl~VY~~G~lk~q~igll~ 182 (240)
T KOG3170|consen 161 -NLPTLLVYHHGALKKQMIGLLE 182 (240)
T ss_pred -CCCeEEEeecchHHhheehhhh
Confidence 6999999999998888776543
No 178
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.37 E-value=0.0015 Score=48.74 Aligned_cols=82 Identities=22% Similarity=0.419 Sum_probs=66.2
Q ss_pred ceeecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCC
Q 030433 45 ISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMG 124 (177)
Q Consensus 45 ~~~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~ 124 (177)
.+..+|.+++...... +. .++++.|..............+.++++++. .++.|+.+|.+.++...+.+++. ..
T Consensus 78 ~v~~~t~~n~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~-~~~~f~~~d~~~~~~~~~~~~i~----~~ 150 (184)
T PF13848_consen 78 LVPELTPENFEKLFSS-PK-PPVLILFDNKDNESTEAFKKELQDIAKKFK-GKINFVYVDADDFPRLLKYFGID----ED 150 (184)
T ss_dssp SCEEESTTHHHHHHST-SS-EEEEEEEETTTHHHHHHHHHHHHHHHHCTT-TTSEEEEEETTTTHHHHHHTTTT----TS
T ss_pred cccccchhhHHHHhcC-CC-ceEEEEEEcCCchhHHHHHHHHHHHHHhcC-CeEEEEEeehHHhHHHHHHcCCC----Cc
Confidence 3567777777766665 32 227777877778888999999999999997 57999999999999999999987 23
Q ss_pred CCCEEEEEe
Q 030433 125 QLPTYILFE 133 (177)
Q Consensus 125 ~~Ptlii~~ 133 (177)
.+|++++++
T Consensus 151 ~~P~~vi~~ 159 (184)
T PF13848_consen 151 DLPALVIFD 159 (184)
T ss_dssp SSSEEEEEE
T ss_pred cCCEEEEEE
Confidence 799999997
No 179
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.37 E-value=0.0012 Score=45.25 Aligned_cols=58 Identities=16% Similarity=0.272 Sum_probs=39.3
Q ss_pred EEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHH---HHh----CCCcCCCCCCCCEEEEEeCCEEee
Q 030433 67 WLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAA---EKF----GISLGGSMGQLPTYILFENNAEIN 139 (177)
Q Consensus 67 vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~---~~~----~v~~~~~~~~~Ptlii~~~G~~~~ 139 (177)
-++.|..+|||.|.+....|++. ++.+-.+|+++.++.. +.+ +.. .+|.+ |-+|+.++
T Consensus 9 ~Vvvysk~~Cp~C~~ak~~L~~~-------~i~~~~vdid~~~~~~~~~~~l~~~tg~~------tvP~V--fi~g~~iG 73 (99)
T TIGR02189 9 AVVIFSRSSCCMCHVVKRLLLTL-------GVNPAVHEIDKEPAGKDIENALSRLGCSP------AVPAV--FVGGKLVG 73 (99)
T ss_pred CEEEEECCCCHHHHHHHHHHHHc-------CCCCEEEEcCCCccHHHHHHHHHHhcCCC------CcCeE--EECCEEEc
Confidence 35679999999999999988653 2555567777665422 222 445 89986 56776554
No 180
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.28 E-value=0.0041 Score=42.43 Aligned_cols=68 Identities=13% Similarity=0.227 Sum_probs=45.0
Q ss_pred HHHHHHhcCCCCceEEEEEec----CCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHH----hCCCcCCCCC
Q 030433 53 QLEALLTEGKTSRYWLVEFRA----QCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEK----FGISLGGSMG 124 (177)
Q Consensus 53 ~~~~~l~~~~~~~~vlV~F~a----~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~----~~v~~~~~~~ 124 (177)
..++.+++ ++ ++|+=.+ +|||.|.+....|++. ++.+..+|+++++...+. .+-.
T Consensus 4 ~v~~~i~~-~~---Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-------~i~~~~~di~~~~~~~~~l~~~tg~~------ 66 (97)
T TIGR00365 4 RIKEQIKE-NP---VVLYMKGTPQFPQCGFSARAVQILKAC-------GVPFAYVNVLEDPEIRQGIKEYSNWP------ 66 (97)
T ss_pred HHHHHhcc-CC---EEEEEccCCCCCCCchHHHHHHHHHHc-------CCCEEEEECCCCHHHHHHHHHHhCCC------
Confidence 34555555 54 6665442 8999999999998663 366778898877654433 2344
Q ss_pred CCCEEEEEeCCEEee
Q 030433 125 QLPTYILFENNAEIN 139 (177)
Q Consensus 125 ~~Ptlii~~~G~~~~ 139 (177)
.+|.+ |-+|+.++
T Consensus 67 tvP~v--fi~g~~iG 79 (97)
T TIGR00365 67 TIPQL--YVKGEFVG 79 (97)
T ss_pred CCCEE--EECCEEEe
Confidence 78876 55676554
No 181
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.27 E-value=0.0027 Score=40.52 Aligned_cols=56 Identities=21% Similarity=0.309 Sum_probs=39.9
Q ss_pred EEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccH---HHHhCCCcCCCCCCCCEEEEEeCCEEe
Q 030433 68 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNA---AEKFGISLGGSMGQLPTYILFENNAEI 138 (177)
Q Consensus 68 lV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~---~~~~~v~~~~~~~~~Ptlii~~~G~~~ 138 (177)
++.|..+|||.|.+.+..|++ .++.+..+|++++... ....+.. .+|.+ +-+|+.+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~-------~~i~~~~~~v~~~~~~~~~~~~~g~~------~vP~i--fi~g~~i 61 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE-------NGISYEEIPLGKDITGRSLRAVTGAM------TVPQV--FIDGELI 61 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cCCCcEEEECCCChhHHHHHHHhCCC------CcCeE--EECCEEE
Confidence 567899999999999988874 2467777888766532 2223666 89986 5667654
No 182
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.27 E-value=0.0029 Score=40.42 Aligned_cols=58 Identities=21% Similarity=0.392 Sum_probs=40.5
Q ss_pred EEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHh----CCCcCCCCCCCCEEEEEeCCEEee
Q 030433 68 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKF----GISLGGSMGQLPTYILFENNAEIN 139 (177)
Q Consensus 68 lV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~----~v~~~~~~~~~Ptlii~~~G~~~~ 139 (177)
++.|+.+|||.|......|++ .++.+-.+|++++++..+++ +.. .++|++ +-+|+.+.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~i~i~~~~~~~~~~~~~~~~~-----~~vP~v--~i~g~~ig 63 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-------KGVDYEEIDVDGDPALREEMINRSGGR-----RTVPQI--FIGDVHIG 63 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------CCCcEEEEECCCCHHHHHHHHHHhCCC-----CccCEE--EECCEEEe
Confidence 467889999999999999865 34777788888776554443 322 168865 56676544
No 183
>PHA03050 glutaredoxin; Provisional
Probab=97.13 E-value=0.0034 Score=43.78 Aligned_cols=61 Identities=20% Similarity=0.231 Sum_probs=39.1
Q ss_pred EEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCC---Ccc----HHHHhCCCcCCCCCCCCEEEEEeCCEEee
Q 030433 67 WLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL---FPN----AAEKFGISLGGSMGQLPTYILFENNAEIN 139 (177)
Q Consensus 67 vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~---~~~----~~~~~~v~~~~~~~~~Ptlii~~~G~~~~ 139 (177)
-++.|..+|||.|++....|++..-+++ .+-.+|+++ ..+ +.+.-+-. .+|++ |-+|+-++
T Consensus 14 ~V~vys~~~CPyC~~ak~~L~~~~i~~~----~~~~i~i~~~~~~~~~~~~l~~~tG~~------tVP~I--fI~g~~iG 81 (108)
T PHA03050 14 KVTIFVKFTCPFCRNALDILNKFSFKRG----AYEIVDIKEFKPENELRDYFEQITGGR------TVPRI--FFGKTSIG 81 (108)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCCcC----CcEEEECCCCCCCHHHHHHHHHHcCCC------CcCEE--EECCEEEe
Confidence 3567999999999999999977543221 344455554 222 33334555 89998 55677554
No 184
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.12 E-value=0.0029 Score=41.64 Aligned_cols=59 Identities=19% Similarity=0.182 Sum_probs=43.3
Q ss_pred EEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECC--CC------------------------------ccHHHHh
Q 030433 68 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLG--LF------------------------------PNAAEKF 115 (177)
Q Consensus 68 lV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~--~~------------------------------~~~~~~~ 115 (177)
+..|+...||.|..+.+.+.++.+..+ .++.+....+. .. ...++++
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 79 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADD-GGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARAL 79 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcC-CcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHc
Confidence 467999999999999999999875544 55666555432 21 1345677
Q ss_pred CCCcCCCCCCCCEEEEEe
Q 030433 116 GISLGGSMGQLPTYILFE 133 (177)
Q Consensus 116 ~v~~~~~~~~~Ptlii~~ 133 (177)
++. ++||+++..
T Consensus 80 g~~------g~Pt~v~~~ 91 (98)
T cd02972 80 GVT------GTPTFVVNG 91 (98)
T ss_pred CCC------CCCEEEECC
Confidence 888 999998876
No 185
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.08 E-value=0.0037 Score=54.89 Aligned_cols=71 Identities=18% Similarity=0.328 Sum_probs=58.2
Q ss_pred EEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEEEEeCCEEeeeecCCCC
Q 030433 67 WLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEINRFPAFGF 146 (177)
Q Consensus 67 vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii~~~G~~~~r~~g~~~ 146 (177)
-+-.|.++.||+|......+++++...+ ++..-.+|..++++++++|++. ++|++++ ||+.. +.|..+
T Consensus 120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p--~i~~~~id~~~~~~~~~~~~v~------~VP~~~i--~~~~~--~~g~~~ 187 (515)
T TIGR03140 120 HFETYVSLTCQNCPDVVQALNQMALLNP--NISHTMIDGALFQDEVEALGIQ------GVPAVFL--NGEEF--HNGRMD 187 (515)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCC--CceEEEEEchhCHHHHHhcCCc------ccCEEEE--CCcEE--EecCCC
Confidence 4778999999999999999999988764 6888889999999999999999 9999976 55433 345554
Q ss_pred CCc
Q 030433 147 EEK 149 (177)
Q Consensus 147 ~~~ 149 (177)
.++
T Consensus 188 ~~~ 190 (515)
T TIGR03140 188 LAE 190 (515)
T ss_pred HHH
Confidence 443
No 186
>PRK10638 glutaredoxin 3; Provisional
Probab=97.08 E-value=0.0046 Score=40.68 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=40.4
Q ss_pred EEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHH----hCCCcCCCCCCCCEEEEEeCCEEee
Q 030433 68 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEK----FGISLGGSMGQLPTYILFENNAEIN 139 (177)
Q Consensus 68 lV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~----~~v~~~~~~~~~Ptlii~~~G~~~~ 139 (177)
++.|..+||+.|++.+..+++. ++.+..+|++.+++..+. .+.. .+|++ +.+|+.++
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-------gi~y~~~dv~~~~~~~~~l~~~~g~~------~vP~i--~~~g~~ig 64 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-------GVSFQEIPIDGDAAKREEMIKRSGRT------TVPQI--FIDAQHIG 64 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------CCCcEEEECCCCHHHHHHHHHHhCCC------CcCEE--EECCEEEe
Confidence 5668889999999999999752 366667888776644333 3455 79976 44676655
No 187
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.00 E-value=0.0066 Score=40.69 Aligned_cols=51 Identities=16% Similarity=0.232 Sum_probs=36.0
Q ss_pred CCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHH----hCCCcCCCCCCCCEEEEEeCCEEee
Q 030433 74 QCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEK----FGISLGGSMGQLPTYILFENNAEIN 139 (177)
Q Consensus 74 ~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~----~~v~~~~~~~~~Ptlii~~~G~~~~ 139 (177)
+|||.|+.....|++. ++.+..+|+.+++++.+. .+-. .+|.+ |-+|+-++
T Consensus 21 ~~Cp~C~~ak~~L~~~-------~i~y~~idv~~~~~~~~~l~~~~g~~------tvP~v--fi~g~~iG 75 (90)
T cd03028 21 PRCGFSRKVVQILNQL-------GVDFGTFDILEDEEVRQGLKEYSNWP------TFPQL--YVNGELVG 75 (90)
T ss_pred CCCcHHHHHHHHHHHc-------CCCeEEEEcCCCHHHHHHHHHHhCCC------CCCEE--EECCEEEe
Confidence 7999999999998764 366777788777655333 3555 89986 55777543
No 188
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0022 Score=42.28 Aligned_cols=54 Identities=19% Similarity=0.330 Sum_probs=37.7
Q ss_pred EEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCcc--H---HHHh-CCCcCCCCCCCCEEEEEeCCE
Q 030433 68 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPN--A---AEKF-GISLGGSMGQLPTYILFENNA 136 (177)
Q Consensus 68 lV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~--~---~~~~-~v~~~~~~~~~Ptlii~~~G~ 136 (177)
++.|..++||.|++....|++ .++.+..+|++.... . .++- +.+ .+|.+++ +|+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~-------~g~~~~~i~~~~~~~~~~~~~~~~~~g~~------tvP~I~i--~~~ 62 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR-------KGVDYEEIDVDDDEPEEAREMVKRGKGQR------TVPQIFI--GGK 62 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH-------cCCCcEEEEecCCcHHHHHHHHHHhCCCC------CcCEEEE--CCE
Confidence 466889999999999998873 557777878877663 2 2222 344 8998654 444
No 189
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.012 Score=43.79 Aligned_cols=85 Identities=11% Similarity=0.072 Sum_probs=61.9
Q ss_pred CCCceEEEEEe-cCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECC---------------------CCccHHHHhCCCc
Q 030433 62 KTSRYWLVEFR-AQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLG---------------------LFPNAAEKFGISL 119 (177)
Q Consensus 62 ~~~~~vlV~F~-a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~---------------------~~~~~~~~~~v~~ 119 (177)
-+++++++||| ..++|.|-.+.-.|.+...+++..+..++.|..+ .+..+++.|++..
T Consensus 28 ~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~ 107 (157)
T COG1225 28 LRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWG 107 (157)
T ss_pred hcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCccc
Confidence 34445999999 7999999999999999888888778888888765 3456788888863
Q ss_pred CCC------CCCCCEEEEE-eCCEEeeeecCCCC
Q 030433 120 GGS------MGQLPTYILF-ENNAEINRFPAFGF 146 (177)
Q Consensus 120 ~~~------~~~~Ptlii~-~~G~~~~r~~g~~~ 146 (177)
... ....++..++ ++|+....+.....
T Consensus 108 ~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~ 141 (157)
T COG1225 108 EKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKV 141 (157)
T ss_pred ccccCccccccccceEEEECCCCeEEEEecCCCC
Confidence 221 1355666666 67888777744433
No 190
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.88 E-value=0.0092 Score=52.93 Aligned_cols=95 Identities=16% Similarity=0.188 Sum_probs=73.8
Q ss_pred HHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEEEE
Q 030433 53 QLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILF 132 (177)
Q Consensus 53 ~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii~ 132 (177)
++.+.+.+ -+....++.|+.+.|..|..+...++++++ .. +++++...|..++...+++|++. ..|++.++
T Consensus 356 ~l~~~~~~-l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s-~~i~~~~~~~~~~~~~~~~~~v~------~~P~~~i~ 426 (555)
T TIGR03143 356 QLVGIFGR-LENPVTLLLFLDGSNEKSAELQSFLGEFAS-LS-EKLNSEAVNRGEEPESETLPKIT------KLPTVALL 426 (555)
T ss_pred HHHHHHHh-cCCCEEEEEEECCCchhhHHHHHHHHHHHh-cC-CcEEEEEeccccchhhHhhcCCC------cCCEEEEE
Confidence 45555555 443346778888899999999999999986 44 56888888988999999999999 89999999
Q ss_pred e-CCEEe-eeecCCCCCCcccccccc
Q 030433 133 E-NNAEI-NRFPAFGFEEKFSHPHIT 156 (177)
Q Consensus 133 ~-~G~~~-~r~~g~~~~~~~~~~~~~ 156 (177)
+ +|+.. -|+.|...-.++.++...
T Consensus 427 ~~~~~~~~i~f~g~P~G~Ef~s~i~~ 452 (555)
T TIGR03143 427 DDDGNYTGLKFHGVPSGHELNSFILA 452 (555)
T ss_pred eCCCcccceEEEecCccHhHHHHHHH
Confidence 5 66443 688898888877766443
No 191
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.78 E-value=0.0052 Score=49.17 Aligned_cols=80 Identities=8% Similarity=0.105 Sum_probs=52.1
Q ss_pred CCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECC------------------------------------
Q 030433 63 TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLG------------------------------------ 106 (177)
Q Consensus 63 ~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~------------------------------------ 106 (177)
+.+.+++.|.-+.||.|+++.+.+.++.+. .++.+..+-+.
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~---g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~ 192 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS---GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLK 192 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc---CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCC
Confidence 344588999999999999999888776542 11332222110
Q ss_pred --------------CCccHHHHhCCCcCCCCCCCCEEEEEeCCEEeeeecCCCCCCccc
Q 030433 107 --------------LFPNAAEKFGISLGGSMGQLPTYILFENNAEINRFPAFGFEEKFS 151 (177)
Q Consensus 107 --------------~~~~~~~~~~v~~~~~~~~~Ptlii~~~G~~~~r~~g~~~~~~~~ 151 (177)
++..++++++++ ++|++++-++...+....|..+.+++.
T Consensus 193 ~~~~~~~~~~~~i~~n~~l~~~lGv~------GTPaiv~~d~~G~~~~v~G~~~~~~L~ 245 (251)
T PRK11657 193 PPASIPAAVRKQLADNQKLMDDLGAN------ATPAIYYMDKDGTLQQVVGLPDPAQLA 245 (251)
T ss_pred ccccCCHHHHHHHHHHHHHHHHcCCC------CCCEEEEECCCCCEEEecCCCCHHHHH
Confidence 111355677888 999999986433456677887666443
No 192
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=96.51 E-value=0.013 Score=40.89 Aligned_cols=77 Identities=16% Similarity=0.138 Sum_probs=57.7
Q ss_pred eecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHH---hCCCCcEEEEEECCCCccHHHHhCCCcCCCC
Q 030433 47 NKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIA---YSNKNVSFGIVDLGLFPNAAEKFGISLGGSM 123 (177)
Q Consensus 47 ~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~---~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~ 123 (177)
.+++.++.+..... +-+ ..+.|+ .-..-....+.+.+++++ +. .++.|+.+|.+......+.+|++
T Consensus 2 ~e~t~e~~~~~~~~-~~~--~~~l~f--~~~~~~~~~~~~~~vAk~~~~~k-gki~Fv~~d~~~~~~~~~~fgl~----- 70 (111)
T cd03072 2 REITFENAEELTEE-GLP--FLILFH--DKDDLESLKEFKQAVARQLISEK-GAINFLTADGDKFRHPLLHLGKT----- 70 (111)
T ss_pred cccccccHHHHhcC-CCC--eEEEEe--cchHHHHHHHHHHHHHHHHHhcC-ceEEEEEEechHhhhHHHHcCCC-----
Confidence 45666777666666 333 445555 223346778999999999 88 56999999999988899999999
Q ss_pred CC--CCEEEEEeCC
Q 030433 124 GQ--LPTYILFENN 135 (177)
Q Consensus 124 ~~--~Ptlii~~~G 135 (177)
. .|.+.+....
T Consensus 71 -~~~~P~i~i~~~~ 83 (111)
T cd03072 71 -PADLPVIAIDSFR 83 (111)
T ss_pred -HhHCCEEEEEcch
Confidence 5 8999998653
No 193
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=96.46 E-value=0.0079 Score=43.30 Aligned_cols=40 Identities=15% Similarity=0.157 Sum_probs=31.2
Q ss_pred CceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEEC
Q 030433 64 SRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDL 105 (177)
Q Consensus 64 ~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~ 105 (177)
.++.++.|+..+||+|+.+.|.+.++..++++ +.+...+.
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~--~~~~~~~~ 44 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD--VRVVFKEF 44 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCCC--ceEEEEeC
Confidence 45589999999999999999999998877653 44444443
No 194
>PRK10824 glutaredoxin-4; Provisional
Probab=96.46 E-value=0.011 Score=41.73 Aligned_cols=73 Identities=12% Similarity=0.218 Sum_probs=44.0
Q ss_pred hHHHHHHhcCCCCceEEEEEec----CCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCC
Q 030433 52 LQLEALLTEGKTSRYWLVEFRA----QCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLP 127 (177)
Q Consensus 52 ~~~~~~l~~~~~~~~vlV~F~a----~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~P 127 (177)
+..++.+++ ++ ++|.--+ +|||.|++....|.+.. +.+..+|+++++++.+...-. .+...+|
T Consensus 6 ~~v~~~I~~-~~---Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~-------i~~~~idi~~d~~~~~~l~~~--sg~~TVP 72 (115)
T PRK10824 6 EKIQRQIAE-NP---ILLYMKGSPKLPSCGFSAQAVQALSACG-------ERFAYVDILQNPDIRAELPKY--ANWPTFP 72 (115)
T ss_pred HHHHHHHhc-CC---EEEEECCCCCCCCCchHHHHHHHHHHcC-------CCceEEEecCCHHHHHHHHHH--hCCCCCC
Confidence 344666666 54 6554333 59999999999987752 445566777766654443221 1222566
Q ss_pred EEEEEeCCEEee
Q 030433 128 TYILFENNAEIN 139 (177)
Q Consensus 128 tlii~~~G~~~~ 139 (177)
. +|-+|+-++
T Consensus 73 Q--IFI~G~~IG 82 (115)
T PRK10824 73 Q--LWVDGELVG 82 (115)
T ss_pred e--EEECCEEEc
Confidence 5 556777665
No 195
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=96.44 E-value=0.016 Score=38.82 Aligned_cols=85 Identities=19% Similarity=0.213 Sum_probs=57.4
Q ss_pred hHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEEE
Q 030433 52 LQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYIL 131 (177)
Q Consensus 52 ~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii 131 (177)
+++++.+.. .+. ++|-|+.++|+ .....+.++++.+. ..+.|+.++ +..+++++++. -|++++
T Consensus 8 ~~l~~~~~~-~~~--~vvg~f~~~~~---~~~~~f~~~A~~~r-~~~~F~~~~---~~~~~~~~~~~-------~~~i~l 70 (97)
T cd02981 8 EELEKFLDK-DDV--VVVGFFKDEES---EEYKTFEKVAESLR-DDYGFGHTS---DKEVAKKLKVK-------PGSVVL 70 (97)
T ss_pred HHHHHHhcc-CCe--EEEEEECCCCc---HHHHHHHHHHHhcc-cCCeEEEEC---hHHHHHHcCCC-------CCceEE
Confidence 556665655 444 88889999988 46677888888876 458887775 45677778776 599999
Q ss_pred EeCC-EEeeeecCCCCCCccccc
Q 030433 132 FENN-AEINRFPAFGFEEKFSHP 153 (177)
Q Consensus 132 ~~~G-~~~~r~~g~~~~~~~~~~ 153 (177)
++++ .....+.|..+.+.+.+|
T Consensus 71 ~~~~~~~~~~y~g~~~~~~l~~f 93 (97)
T cd02981 71 FKPFEEEPVEYDGEFTEESLVEF 93 (97)
T ss_pred eCCcccCCccCCCCCCHHHHHHH
Confidence 9764 333445555444444444
No 196
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=96.44 E-value=0.038 Score=39.73 Aligned_cols=85 Identities=16% Similarity=0.252 Sum_probs=58.8
Q ss_pred ceeecChhHH-HHHHhcCCCCceEEEEEecC---CChhhH-HHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCc
Q 030433 45 ISNKLTPLQL-EALLTEGKTSRYWLVEFRAQ---CSSTCI-RASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISL 119 (177)
Q Consensus 45 ~~~~l~~~~~-~~~l~~~~~~~~vlV~F~a~---wC~~C~-~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~ 119 (177)
.+.+++.++. ++.-.+ . +..+|-|.-. .-+.+. .....+.+++++++++.+.|+.+|.++.....+.|++.
T Consensus 3 ~~~~l~~~~~~~~~C~~-~--~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~- 78 (130)
T cd02983 3 EIIELTSEDVFEETCEE-K--QLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIG- 78 (130)
T ss_pred ceEEecCHHHHHhhccC-C--CeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCC-
Confidence 3556665544 555544 3 2356666432 223343 55788999999999555999999999999999999996
Q ss_pred CCCCCCCCEEEEEeCCE
Q 030433 120 GGSMGQLPTYILFENNA 136 (177)
Q Consensus 120 ~~~~~~~Ptlii~~~G~ 136 (177)
..++|++++++..+
T Consensus 79 ---~~~~P~v~i~~~~~ 92 (130)
T cd02983 79 ---GFGYPAMVAINFRK 92 (130)
T ss_pred ---ccCCCEEEEEeccc
Confidence 01599999996644
No 197
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=96.25 E-value=0.022 Score=48.83 Aligned_cols=63 Identities=14% Similarity=0.223 Sum_probs=41.3
Q ss_pred EEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHH---HhC---CCcCCCCCCCCEEEEEeCCEEe
Q 030433 67 WLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAE---KFG---ISLGGSMGQLPTYILFENNAEI 138 (177)
Q Consensus 67 vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~---~~~---v~~~~~~~~~Ptlii~~~G~~~ 138 (177)
.++.|..+|||+|.+....|++ .++++-.+|+++.+...+ +.+ .....+.+++|++++ +|+-+
T Consensus 3 ~V~vys~~~Cp~C~~aK~~L~~-------~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~i 71 (410)
T PRK12759 3 EVRIYTKTNCPFCDLAKSWFGA-------NDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHI 71 (410)
T ss_pred cEEEEeCCCCHHHHHHHHHHHH-------CCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEEE
Confidence 3677999999999999998866 347888899987764332 211 001112338998855 56543
No 198
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=96.15 E-value=0.02 Score=40.06 Aligned_cols=57 Identities=14% Similarity=0.290 Sum_probs=44.3
Q ss_pred ChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEEEEeC
Q 030433 76 SSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFEN 134 (177)
Q Consensus 76 C~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii~~~ 134 (177)
-..-....+.+.++++++++.++.|+.+|.++.....+.+|+... ....|++.+...
T Consensus 30 ~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~--~~~~P~~~i~~~ 86 (111)
T cd03073 30 PKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFS--GGEKPVVAIRTA 86 (111)
T ss_pred hhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcc--cCCCCEEEEEeC
Confidence 344567889999999999833599999999988889999999810 012999999864
No 199
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.034 Score=49.93 Aligned_cols=101 Identities=15% Similarity=0.066 Sum_probs=74.8
Q ss_pred CcceeecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHh-HHH--HHHHHHhCCCCcEEEEEECCCCccHHHHhC-CC
Q 030433 43 LGISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRAS-RIF--PELSIAYSNKNVSFGIVDLGLFPNAAEKFG-IS 118 (177)
Q Consensus 43 ~~~~~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~-p~l--~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~-v~ 118 (177)
|..+..-..+.|..+... +++ +++-...+||-=|.-|. ..+ +++++-.+ .++.-++||-++-|++.+.|. +.
T Consensus 25 PV~W~pW~~eAf~~A~~e-dkP--IflSIGys~CHWChVM~~ESf~d~eiA~~lN-~~FV~IKVDREERPDvD~~Ym~~~ 100 (667)
T COG1331 25 PVDWYPWGEEAFAKAKEE-DKP--ILLSIGYSTCHWCHVMAHESFEDPEIAAILN-ENFVPVKVDREERPDVDSLYMNAS 100 (667)
T ss_pred CccccccCHHHHHHHHHh-CCC--EEEEeccccccchHHHhhhcCCCHHHHHHHH-hCceeeeEChhhccCHHHHHHHHH
Confidence 344556667889877777 444 99999999999999876 344 55666666 678899999999999998885 22
Q ss_pred -cCCCCCCCCEEEEE-eCCEEeeeecCCCCC
Q 030433 119 -LGGSMGQLPTYILF-ENNAEINRFPAFGFE 147 (177)
Q Consensus 119 -~~~~~~~~Ptlii~-~~G~~~~r~~g~~~~ 147 (177)
...+++|+|-.++. .+|+...--.-...+
T Consensus 101 q~~tG~GGWPLtVfLTPd~kPFfagTY~P~e 131 (667)
T COG1331 101 QAITGQGGWPLTVFLTPDGKPFFAGTYFPKE 131 (667)
T ss_pred HHhccCCCCceeEEECCCCceeeeeeecCCc
Confidence 22377799987777 888887654444443
No 200
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=95.90 E-value=0.035 Score=35.81 Aligned_cols=60 Identities=18% Similarity=0.132 Sum_probs=51.7
Q ss_pred EEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEEEE
Q 030433 67 WLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILF 132 (177)
Q Consensus 67 vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii~ 132 (177)
.+..|-+...+.++.....+.++.+++-+..+.+-.+|+.+++++++.+++- ++||++-.
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~iv------AtPtLvk~ 62 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIV------ATPTLVKV 62 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEE------Eechhhhc
Confidence 4556667777999999999999988887678999999999999999999999 99997654
No 201
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.093 Score=36.35 Aligned_cols=73 Identities=15% Similarity=0.211 Sum_probs=44.3
Q ss_pred HHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCc-cHHHHhCCCcCCCCCCCCEEEE
Q 030433 53 QLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP-NAAEKFGISLGGSMGQLPTYIL 131 (177)
Q Consensus 53 ~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~~~~~~~~Ptlii 131 (177)
.++..+++ ++ +|.|..+||+.|..+...|.+ .. .+..++.+|-..+. ++.+... + -...+.+|.+
T Consensus 6 ~v~~~i~~-~~----VVifSKs~C~~c~~~k~ll~~----~~-v~~~vvELD~~~~g~eiq~~l~-~-~tg~~tvP~v-- 71 (104)
T KOG1752|consen 6 KVRKMISE-NP----VVIFSKSSCPYCHRAKELLSD----LG-VNPKVVELDEDEDGSEIQKALK-K-LTGQRTVPNV-- 71 (104)
T ss_pred HHHHHhhc-CC----EEEEECCcCchHHHHHHHHHh----CC-CCCEEEEccCCCCcHHHHHHHH-H-hcCCCCCCEE--
Confidence 34555555 43 466999999999998887766 33 45667777766554 3333332 1 0122367764
Q ss_pred EeCCEEee
Q 030433 132 FENNAEIN 139 (177)
Q Consensus 132 ~~~G~~~~ 139 (177)
|-+|+-++
T Consensus 72 FI~Gk~iG 79 (104)
T KOG1752|consen 72 FIGGKFIG 79 (104)
T ss_pred EECCEEEc
Confidence 55777653
No 202
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=95.87 E-value=0.015 Score=43.00 Aligned_cols=40 Identities=15% Similarity=0.109 Sum_probs=31.0
Q ss_pred EEEEEecCCChhhHHH-hHHHHHHHHHhCCCCc-EEEEEECC
Q 030433 67 WLVEFRAQCSSTCIRA-SRIFPELSIAYSNKNV-SFGIVDLG 106 (177)
Q Consensus 67 vlV~F~a~wC~~C~~~-~p~l~~~~~~~~~~~~-~~~~vd~~ 106 (177)
+++.|.+.|||.|... .+.+.+..+++...+. .++.+..+
T Consensus 33 vl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D 74 (155)
T cd03013 33 VIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVN 74 (155)
T ss_pred EEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECC
Confidence 4555559999999999 9999988888876666 47777654
No 203
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=95.26 E-value=0.09 Score=38.25 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=35.1
Q ss_pred CCceEEEEEecCCChhhHHHhHHHHHHHHHh-CCCCcEEEEEEC
Q 030433 63 TSRYWLVEFRAQCSSTCIRASRIFPELSIAY-SNKNVSFGIVDL 105 (177)
Q Consensus 63 ~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~-~~~~~~~~~vd~ 105 (177)
...++++.|....||+|..+.+.+.++.+++ .+.++.+...++
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 3455899999999999999999999999988 235788888876
No 204
>PRK09301 circadian clock protein KaiB; Provisional
Probab=95.06 E-value=0.092 Score=36.19 Aligned_cols=76 Identities=16% Similarity=0.109 Sum_probs=61.1
Q ss_pred CceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEEEEeCCEEeeeecC
Q 030433 64 SRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEINRFPA 143 (177)
Q Consensus 64 ~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii~~~G~~~~r~~g 143 (177)
...++=.|-|...+.++.....+.++.+++-...+.+-.+|+.+++++++.+++- ++||++=... ....|+.|
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~Iv------ATPTLIK~~P-~P~rriiG 77 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKIL------ATPTLAKILP-PPVRKIIG 77 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeE------EecHHhhcCC-CCcceeec
Confidence 3456677889999999999999999888776667999999999999999999999 9999765543 33456666
Q ss_pred CCC
Q 030433 144 FGF 146 (177)
Q Consensus 144 ~~~ 146 (177)
-.+
T Consensus 78 Dls 80 (103)
T PRK09301 78 DLS 80 (103)
T ss_pred ccc
Confidence 654
No 205
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=94.93 E-value=0.049 Score=40.38 Aligned_cols=38 Identities=21% Similarity=0.247 Sum_probs=31.3
Q ss_pred eEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEE
Q 030433 66 YWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVD 104 (177)
Q Consensus 66 ~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd 104 (177)
+.+++|+...||+|+.+.+.+.++.++++ .++.+..+.
T Consensus 17 ~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~-~~v~~~~~~ 54 (178)
T cd03019 17 PEVIEFFSYGCPHCYNFEPILEAWVKKLP-KDVKFEKVP 54 (178)
T ss_pred cEEEEEECCCCcchhhhhHHHHHHHHhCC-CCceEEEcC
Confidence 48999999999999999999999988885 456654433
No 206
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=94.92 E-value=0.1 Score=34.88 Aligned_cols=75 Identities=16% Similarity=0.115 Sum_probs=59.3
Q ss_pred eEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEEEEeCCEEeeeecCCC
Q 030433 66 YWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEINRFPAFG 145 (177)
Q Consensus 66 ~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii~~~G~~~~r~~g~~ 145 (177)
.++=.|-|...+.++.....+.++.+++-...+.+-.+|+.++|++++.+++- ++||++=... ....|+.|-.
T Consensus 4 ~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~Iv------ATPtLIK~~P-~P~rriiGdl 76 (87)
T TIGR02654 4 YVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKIL------ATPTLSKILP-PPVRKIIGDL 76 (87)
T ss_pred EEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEE------EecHHhhcCC-CCcceeeccc
Confidence 35556778889999999999999888776666999999999999999999999 9999765543 3345666665
Q ss_pred CC
Q 030433 146 FE 147 (177)
Q Consensus 146 ~~ 147 (177)
+.
T Consensus 77 s~ 78 (87)
T TIGR02654 77 SD 78 (87)
T ss_pred cc
Confidence 43
No 207
>PTZ00062 glutaredoxin; Provisional
Probab=94.78 E-value=0.17 Score=39.35 Aligned_cols=55 Identities=11% Similarity=0.146 Sum_probs=35.1
Q ss_pred CCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEEEEeCCEEee
Q 030433 74 QCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEIN 139 (177)
Q Consensus 74 ~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii~~~G~~~~ 139 (177)
||||.|++....|++. ++.+..+|+.++++..+...-. .+...+|.+ |-+|+-++
T Consensus 126 p~C~~C~~~k~~L~~~-------~i~y~~~DI~~d~~~~~~l~~~--sg~~TvPqV--fI~G~~IG 180 (204)
T PTZ00062 126 PFCRFSNAVVNMLNSS-------GVKYETYNIFEDPDLREELKVY--SNWPTYPQL--YVNGELIG 180 (204)
T ss_pred CCChhHHHHHHHHHHc-------CCCEEEEEcCCCHHHHHHHHHH--hCCCCCCeE--EECCEEEc
Confidence 7999999999888752 4777788998777654443211 111256654 45676654
No 208
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=94.20 E-value=0.32 Score=36.68 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=24.4
Q ss_pred EEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEE
Q 030433 70 EFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIV 103 (177)
Q Consensus 70 ~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v 103 (177)
+|..|.|+.|-...|.+.++..+|+ .++.+-.+
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~-~~i~~~~i 34 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYG-NKIEFRFI 34 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS--TTEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcC-CcEEEEEE
Confidence 6899999999999999999999987 44544333
No 209
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=94.19 E-value=0.096 Score=35.91 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=26.8
Q ss_pred EEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCcc
Q 030433 69 VEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPN 110 (177)
Q Consensus 69 V~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~ 110 (177)
..|+.++|+.|++....+++ .++.+-.+|+.+.+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~ 36 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEE-------HGIEYEFIDYLKEPP 36 (105)
T ss_pred EEEECCCCHHHHHHHHHHHH-------cCCCcEEEeeccCCC
Confidence 46889999999999888765 346677778766543
No 210
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=93.72 E-value=0.1 Score=40.30 Aligned_cols=39 Identities=8% Similarity=0.202 Sum_probs=31.0
Q ss_pred eEEEEEecCCChhhHHHhHHH---HHHHHHhCCCCcEEEEEEC
Q 030433 66 YWLVEFRAQCSSTCIRASRIF---PELSIAYSNKNVSFGIVDL 105 (177)
Q Consensus 66 ~vlV~F~a~wC~~C~~~~p~l---~~~~~~~~~~~~~~~~vd~ 105 (177)
+.+|+|+.-.||+|..+.|.+ +.+.+.++ +++.+.++.+
T Consensus 39 ~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~-~~v~~~~~~~ 80 (207)
T PRK10954 39 PQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLP-EGTKMTKYHV 80 (207)
T ss_pred CeEEEEeCCCCccHHHhcccccchHHHHHhCC-CCCeEEEecc
Confidence 379999999999999999876 77788776 5566665543
No 211
>PHA03075 glutaredoxin-like protein; Provisional
Probab=93.41 E-value=0.15 Score=35.82 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=28.5
Q ss_pred EEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEEC
Q 030433 67 WLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDL 105 (177)
Q Consensus 67 vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~ 105 (177)
+++.|+.|.|+-|+.....++++..+|. +.+||+
T Consensus 4 tLILfGKP~C~vCe~~s~~l~~ledeY~-----ilrVNI 37 (123)
T PHA03075 4 TLILFGKPLCSVCESISEALKELEDEYD-----ILRVNI 37 (123)
T ss_pred eEEEeCCcccHHHHHHHHHHHHhhcccc-----EEEEEe
Confidence 8999999999999999999988877664 555554
No 212
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=92.65 E-value=0.27 Score=34.20 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=28.0
Q ss_pred EEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccH
Q 030433 69 VEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNA 111 (177)
Q Consensus 69 V~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~ 111 (177)
..|+.++|+.|++....|++ .++.|-.+|+.+++..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~ 37 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE-------HGVDYTAIDIVEEPPS 37 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH-------cCCceEEecccCCccc
Confidence 45889999999999988866 3577888888766543
No 213
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=92.63 E-value=0.5 Score=33.67 Aligned_cols=98 Identities=18% Similarity=0.216 Sum_probs=60.4
Q ss_pred eecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHH-HHh-CCCCcEEEEEECC-----CCccHHHHhCCCc
Q 030433 47 NKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELS-IAY-SNKNVSFGIVDLG-----LFPNAAEKFGISL 119 (177)
Q Consensus 47 ~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~-~~~-~~~~~~~~~vd~~-----~~~~~~~~~~v~~ 119 (177)
..++.-+|+..+.+ .+- ++|.|=...- --.-...+.+++ +.. ..+++-+..|-+. +|.+++++|++..
T Consensus 7 v~LD~~tFdKvi~k-f~~--~LVKFD~ayP--yGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k 81 (126)
T PF07912_consen 7 VPLDELTFDKVIPK-FKY--VLVKFDVAYP--YGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK 81 (126)
T ss_dssp EEESTTHHHHHGGG-SSE--EEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred eeccceehhheecc-Cce--EEEEEeccCC--CcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence 45667789999988 554 9999976543 223345566666 433 2356778888765 5678999999962
Q ss_pred CCCCCCCCEEEEEe-CCEEeeee--cCCCCCCccccc
Q 030433 120 GGSMGQLPTYILFE-NNAEINRF--PAFGFEEKFSHP 153 (177)
Q Consensus 120 ~~~~~~~Ptlii~~-~G~~~~r~--~g~~~~~~~~~~ 153 (177)
..+|.+.+|. +.++.-++ .|..+.+.+..|
T Consensus 82 ----e~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~f 114 (126)
T PF07912_consen 82 ----EDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRF 114 (126)
T ss_dssp ----CC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHH
T ss_pred ----ccCCEEEEecCCCCCCccCCccCCccHHHHHHH
Confidence 2689999996 55555666 444434444433
No 214
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=92.52 E-value=0.28 Score=33.83 Aligned_cols=35 Identities=11% Similarity=0.113 Sum_probs=27.0
Q ss_pred EEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCcc
Q 030433 69 VEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPN 110 (177)
Q Consensus 69 V~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~ 110 (177)
..|+.++|+.|+.....|++ .++.+-.+|+.+.+.
T Consensus 2 ~iy~~~~C~~crka~~~L~~-------~~i~~~~~di~~~p~ 36 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEA-------RGVAYTFHDYRKDGL 36 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------cCCCeEEEecccCCC
Confidence 46889999999999888855 347777788776653
No 215
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=92.12 E-value=0.4 Score=34.47 Aligned_cols=35 Identities=17% Similarity=0.353 Sum_probs=25.8
Q ss_pred EEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCc
Q 030433 68 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP 109 (177)
Q Consensus 68 lV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~ 109 (177)
+..|+.++|+.|++....|++ .++.+-.+|+.+.+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~-------~gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEE-------HDIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------cCCCcEEeeccCCh
Confidence 356889999999998887755 34666677776554
No 216
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=92.11 E-value=0.064 Score=35.53 Aligned_cols=56 Identities=23% Similarity=0.216 Sum_probs=47.5
Q ss_pred EecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEEEE
Q 030433 71 FRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILF 132 (177)
Q Consensus 71 F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii~ 132 (177)
|=+...+.++.....+..+.+++-+..+.+-.+|+.+++++++.+++- ++||++-.
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~iv------AtPtLik~ 58 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIV------ATPTLIKE 58 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEE------CHHHHHTT
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCee------ecceEeec
Confidence 445566778888899999988877778999999999999999999999 89997643
No 217
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=91.45 E-value=1 Score=36.06 Aligned_cols=33 Identities=9% Similarity=0.019 Sum_probs=24.8
Q ss_pred CCceEEEEEecCCChhhHHHhHHHHHHHHHhCC
Q 030433 63 TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSN 95 (177)
Q Consensus 63 ~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~ 95 (177)
++++.+++..+.|||.|-..+=.+-....+|..
T Consensus 57 ~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 57 NGKPEVIFIGWEGCPYCAAESWALYIALSRFGN 89 (249)
T ss_pred CCeeEEEEEecccCccchhhHHHHHHHHHhcCC
Confidence 356699999999999999998555444455763
No 218
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=91.39 E-value=0.5 Score=33.08 Aligned_cols=38 Identities=18% Similarity=0.378 Sum_probs=28.7
Q ss_pred EEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHH
Q 030433 69 VEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAE 113 (177)
Q Consensus 69 V~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~ 113 (177)
..|+.++|+.|+.....+++ .++.+-.+|+.+.+....
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~ 39 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA-------NGIEYQFIDIGEDGPTRE 39 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------cCCceEEEecCCChhhHH
Confidence 35789999999999988866 347777888876654433
No 219
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=91.32 E-value=1.7 Score=27.13 Aligned_cols=57 Identities=16% Similarity=0.154 Sum_probs=34.3
Q ss_pred EEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCc-cHHHHhCCCcCCCCCCCCEEEEEeCCEE
Q 030433 69 VEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP-NAAEKFGISLGGSMGQLPTYILFENNAE 137 (177)
Q Consensus 69 V~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~~~~~~~~Ptlii~~~G~~ 137 (177)
+.|+.+||+.|++.+-.+++.. -.+....+|....+ ++.+..... .+|++.. .+|..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~g-----l~~e~~~v~~~~~~~~~~~~np~~------~vP~L~~-~~g~~ 59 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAG-----ITVELREVELKNKPAEMLAASPKG------TVPVLVL-GNGTV 59 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcC-----CCcEEEEeCCCCCCHHHHHHCCCC------CCCEEEE-CCCcE
Confidence 3578899999999987776532 23556666654332 232323333 8999853 34544
No 220
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=90.86 E-value=1.2 Score=32.84 Aligned_cols=32 Identities=19% Similarity=0.270 Sum_probs=25.0
Q ss_pred CChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHH
Q 030433 75 CSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAE 113 (177)
Q Consensus 75 wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~ 113 (177)
+|+.|...+..|++. ++.+-.+|++.+++..+
T Consensus 15 t~~~C~~ak~iL~~~-------~V~~~e~DVs~~~~~~~ 46 (147)
T cd03031 15 TFEDCNNVRAILESF-------RVKFDERDVSMDSGFRE 46 (147)
T ss_pred cChhHHHHHHHHHHC-------CCcEEEEECCCCHHHHH
Confidence 899999999988653 37788899987765443
No 221
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=90.26 E-value=2.4 Score=26.97 Aligned_cols=58 Identities=14% Similarity=0.117 Sum_probs=32.5
Q ss_pred EEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHh-CCCcCCCCCCCCEEEEEeCCE
Q 030433 69 VEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKF-GISLGGSMGQLPTYILFENNA 136 (177)
Q Consensus 69 V~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~-~v~~~~~~~~~Ptlii~~~G~ 136 (177)
..++.++|+.|.+.+-.+.+. ++.+-.++++........+ .++ ..+.+|+++.-++|.
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~-------gi~y~~~~v~~~~~~~~~~~~~~---p~~~vP~l~~~~~~~ 61 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTEL-------ELDVILYPCPKGSPKRDKFLEKG---GKVQVPYLVDPNTGV 61 (77)
T ss_pred eEecCCCCchHHHHHHHHHHc-------CCcEEEEECCCChHHHHHHHHhC---CCCcccEEEeCCCCe
Confidence 456778999999988877653 3444445655432222222 111 224899885433343
No 222
>PRK12559 transcriptional regulator Spx; Provisional
Probab=90.12 E-value=0.83 Score=32.83 Aligned_cols=35 Identities=11% Similarity=0.279 Sum_probs=25.2
Q ss_pred EEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCc
Q 030433 68 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP 109 (177)
Q Consensus 68 lV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~ 109 (177)
+..|+.++|+.|+.....|++ .++.+-.+|+.+++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~-------~gi~~~~~di~~~~ 36 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEE-------NQIDYTEKNIVSNS 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------cCCCeEEEEeeCCc
Confidence 456889999999998877755 24666666765443
No 223
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=90.06 E-value=2.1 Score=29.02 Aligned_cols=90 Identities=17% Similarity=0.148 Sum_probs=53.1
Q ss_pred eec-ChhHHHHHHh-cCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCC
Q 030433 47 NKL-TPLQLEALLT-EGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMG 124 (177)
Q Consensus 47 ~~l-~~~~~~~~l~-~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~ 124 (177)
..+ +.+++++.+. . ... ++|-|..+--. .....+.++++.+. ..+.|+... ...+...+++.
T Consensus 3 ~~i~~~~~~e~~~~~~-~~~--~Vvg~f~~~~~---~~~~~F~~vA~~~R-~d~~F~~~~---~~~~~~~~~~~------ 66 (102)
T cd03066 3 EIINSERELQAFENIE-DDI--KLIGYFKSEDS---EHYKAFEEAAEEFH-PYIKFFATF---DSKVAKKLGLK------ 66 (102)
T ss_pred eEcCCHHHHHHHhccc-CCe--EEEEEECCCCC---HHHHHHHHHHHhhh-cCCEEEEEC---cHHHHHHcCCC------
Confidence 344 3467888887 5 332 55555555333 34566778888875 457885443 44667778776
Q ss_pred CCCEEEEEeC-CEEeeee-cCCCCCCccccc
Q 030433 125 QLPTYILFEN-NAEINRF-PAFGFEEKFSHP 153 (177)
Q Consensus 125 ~~Ptlii~~~-G~~~~r~-~g~~~~~~~~~~ 153 (177)
.|+++++++ +.....+ .|..+.+.+.+|
T Consensus 67 -~~~i~l~~~~~e~~~~y~~g~~~~~~l~~f 96 (102)
T cd03066 67 -MNEVDFYEPFMEEPVTIPDKPYSEEELVDF 96 (102)
T ss_pred -CCcEEEeCCCCCCCcccCCCCCCHHHHHHH
Confidence 799999965 3332334 344344444444
No 224
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=90.02 E-value=1.1 Score=31.25 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=25.9
Q ss_pred EEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCc
Q 030433 69 VEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP 109 (177)
Q Consensus 69 V~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~ 109 (177)
..|+.++|+.|++....|++ .++.+-.+|+.+.+
T Consensus 3 ~iY~~~~C~~c~ka~~~L~~-------~gi~~~~idi~~~~ 36 (115)
T cd03032 3 KLYTSPSCSSCRKAKQWLEE-------HQIPFEERNLFKQP 36 (115)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CCCceEEEecCCCc
Confidence 45788999999999888866 34667777776654
No 225
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=89.81 E-value=0.4 Score=38.02 Aligned_cols=58 Identities=19% Similarity=0.173 Sum_probs=39.5
Q ss_pred ceeecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEE
Q 030433 45 ISNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIV 103 (177)
Q Consensus 45 ~~~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v 103 (177)
.+..+++++....++=...++|.+++|.+-.||+-+.-.+.++++.++|.+ -.+|+.|
T Consensus 83 ~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d-~adFl~V 140 (237)
T PF00837_consen 83 PVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSD-VADFLIV 140 (237)
T ss_pred ceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhh-hhheehh
Confidence 445555554222222112355699999999999999999999999999873 3445444
No 226
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=89.07 E-value=0.96 Score=33.40 Aligned_cols=61 Identities=20% Similarity=0.270 Sum_probs=44.9
Q ss_pred HhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEEEEeCC-EEeeeecCC-CCCCccccc
Q 030433 82 ASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENN-AEINRFPAF-GFEEKFSHP 153 (177)
Q Consensus 82 ~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii~~~G-~~~~r~~g~-~~~~~~~~~ 153 (177)
....+.++++.+. +.+.|+.++ +.++++++++. . |++++++++ +....+.|. .+.+.+..|
T Consensus 8 ~~~~f~~~A~~~~-~~~~F~~~~---~~~~~~~~~~~------~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~f 70 (184)
T PF13848_consen 8 LFEIFEEAAEKLK-GDYQFGVTF---NEELAKKYGIK------E-PTIVVYKKFDEKPVVYDGDKFTPEELKKF 70 (184)
T ss_dssp HHHHHHHHHHHHT-TTSEEEEEE----HHHHHHCTCS------S-SEEEEEECTTTSEEEESSSTTSHHHHHHH
T ss_pred HHHHHHHHHHhCc-CCcEEEEEc---HHHHHHHhCCC------C-CcEEEeccCCCCceecccccCCHHHHHHH
Confidence 4567888899997 459998887 67799999999 6 999999874 334556665 455555555
No 227
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=88.41 E-value=2.3 Score=26.36 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=15.6
Q ss_pred EEecCCChhhHHHhHHHHH
Q 030433 70 EFRAQCSSTCIRASRIFPE 88 (177)
Q Consensus 70 ~F~a~wC~~C~~~~p~l~~ 88 (177)
.++.++|+.|++.+-.+..
T Consensus 3 Ly~~~~~p~~~rvr~~L~~ 21 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGL 21 (71)
T ss_pred eEecCCCcHhHHHHHHHHH
Confidence 4678899999998887755
No 228
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=87.96 E-value=1.5 Score=31.50 Aligned_cols=34 Identities=18% Similarity=0.357 Sum_probs=24.9
Q ss_pred EEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCc
Q 030433 69 VEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP 109 (177)
Q Consensus 69 V~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~ 109 (177)
..|+.++|+.|+.....|++ .++.+-.+|+.+.+
T Consensus 3 ~iY~~~~C~~crkA~~~L~~-------~~i~~~~~d~~~~~ 36 (132)
T PRK13344 3 KIYTISSCTSCKKAKTWLNA-------HQLSYKEQNLGKEP 36 (132)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------cCCCeEEEECCCCC
Confidence 46788999999998877754 34667777776543
No 229
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=87.32 E-value=7 Score=26.37 Aligned_cols=81 Identities=14% Similarity=0.162 Sum_probs=49.3
Q ss_pred hHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEEE
Q 030433 52 LQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYIL 131 (177)
Q Consensus 52 ~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii 131 (177)
+++.+..++ -+....++.|..+. ..|..+...++++++-- +++++...+.+. + .|++.+
T Consensus 8 ~qL~~~f~~-l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lS--dkI~~~~~~~~~----------~-------~P~~~i 66 (94)
T cd02974 8 QQLKAYLER-LENPVELVASLDDS-EKSAELLELLEEIASLS--DKITLEEDNDDE----------R-------KPSFSI 66 (94)
T ss_pred HHHHHHHHh-CCCCEEEEEEeCCC-cchHHHHHHHHHHHHhC--CceEEEEecCCC----------C-------CCEEEE
Confidence 445555554 33223455555554 99999999999988854 345553322111 3 699999
Q ss_pred EeCCEEe-eeecCCCCCCccccc
Q 030433 132 FENNAEI-NRFPAFGFEEKFSHP 153 (177)
Q Consensus 132 ~~~G~~~-~r~~g~~~~~~~~~~ 153 (177)
.++|+.. -|+.|...-.++.++
T Consensus 67 ~~~~~~~gIrF~GiP~GhEf~Sl 89 (94)
T cd02974 67 NRPGEDTGIRFAGIPMGHEFTSL 89 (94)
T ss_pred ecCCCcccEEEEecCCchhHHHH
Confidence 8777432 577787776665544
No 230
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=86.94 E-value=3.3 Score=25.45 Aligned_cols=52 Identities=21% Similarity=0.211 Sum_probs=31.9
Q ss_pred EEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCC----ccHHHHhCCCcCCCCCCCCEEEE
Q 030433 69 VEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF----PNAAEKFGISLGGSMGQLPTYIL 131 (177)
Q Consensus 69 V~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~----~~~~~~~~v~~~~~~~~~Ptlii 131 (177)
..|+.++|+.|++.+-.+....- .+....+|.... ++..+..... .+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l-----~~~~~~v~~~~~~~~~~~~~~~~p~~------~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGI-----DVPLVTVDLAAGEQRSPEFLAKNPAG------TVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCC-----CceEEEeecccCccCCHHHHhhCCCC------CCCEEEe
Confidence 35778899999999988866422 244555664321 2233333333 8999864
No 231
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.91 E-value=1.1 Score=29.12 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=17.5
Q ss_pred EEEecCCChhhHHHhHHHHHH
Q 030433 69 VEFRAQCSSTCIRASRIFPEL 89 (177)
Q Consensus 69 V~F~a~wC~~C~~~~p~l~~~ 89 (177)
+.|+|..||.|......++++
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl 25 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL 25 (85)
T ss_pred eeeccccCcchHHHHHHHHHc
Confidence 679999999999887777664
No 232
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=85.10 E-value=4.3 Score=34.97 Aligned_cols=80 Identities=6% Similarity=0.037 Sum_probs=53.1
Q ss_pred EEEEEecCCChhhHHHh--HHHHHHHHHhCCCCcEEEEEECCC--CccHHHHhCCCcCCCCCCCCEEEEE-eCCEEeeee
Q 030433 67 WLVEFRAQCSSTCIRAS--RIFPELSIAYSNKNVSFGIVDLGL--FPNAAEKFGISLGGSMGQLPTYILF-ENNAEINRF 141 (177)
Q Consensus 67 vlV~F~a~wC~~C~~~~--p~l~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~~~~~~~Ptlii~-~~G~~~~r~ 141 (177)
++|.|-+........+. ..........-...+..++++.+. ...++.-|.+. .+|++.++ ..|..++.+
T Consensus 21 lfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v------~vPs~ffIg~sGtpLevi 94 (506)
T KOG2507|consen 21 LFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYV------SVPSIFFIGFSGTPLEVI 94 (506)
T ss_pred EEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccc------cccceeeecCCCceeEEe
Confidence 66666666666666665 222333333323446666666543 34566778888 89999999 789999999
Q ss_pred cCCCCCCcccc
Q 030433 142 PAFGFEEKFSH 152 (177)
Q Consensus 142 ~g~~~~~~~~~ 152 (177)
.|....+++..
T Consensus 95 tg~v~adeL~~ 105 (506)
T KOG2507|consen 95 TGFVTADELAS 105 (506)
T ss_pred eccccHHHHHH
Confidence 99988766554
No 233
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=84.98 E-value=6.5 Score=24.67 Aligned_cols=20 Identities=5% Similarity=0.217 Sum_probs=16.3
Q ss_pred EEEecCCChhhHHHhHHHHH
Q 030433 69 VEFRAQCSSTCIRASRIFPE 88 (177)
Q Consensus 69 V~F~a~wC~~C~~~~p~l~~ 88 (177)
..|+.+.||.|++.+-.+.+
T Consensus 3 ~Ly~~~~~p~c~kv~~~L~~ 22 (77)
T cd03040 3 TLYQYKTCPFCCKVRAFLDY 22 (77)
T ss_pred EEEEcCCCHHHHHHHHHHHH
Confidence 45778999999999977755
No 234
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=84.96 E-value=2.7 Score=31.49 Aligned_cols=47 Identities=17% Similarity=0.231 Sum_probs=33.6
Q ss_pred CCCceEEEEEecCCC-hhhHHHhHHHHHHHHHhCC--CCcEEEEEECCCC
Q 030433 62 KTSRYWLVEFRAQCS-STCIRASRIFPELSIAYSN--KNVSFGIVDLGLF 108 (177)
Q Consensus 62 ~~~~~vlV~F~a~wC-~~C~~~~p~l~~~~~~~~~--~~~~~~~vd~~~~ 108 (177)
-++++++|+|.=+.| ..|-.....+.++.+++.. .++.++.|.+|-.
T Consensus 50 ~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~ 99 (174)
T PF02630_consen 50 LKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPE 99 (174)
T ss_dssp GTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTT
T ss_pred hCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCC
Confidence 456679999998888 5688777777777665542 4688888888743
No 235
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=84.95 E-value=4 Score=25.18 Aligned_cols=52 Identities=17% Similarity=0.233 Sum_probs=29.6
Q ss_pred EEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEE
Q 030433 69 VEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYI 130 (177)
Q Consensus 69 V~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptli 130 (177)
..|+.++|+.|++.+-.+++..- .+....+|.........+.+ ..+.+|++.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi-----~~~~~~v~~~~~~~~~~~~~-----p~~~vP~l~ 53 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGV-----SVEIIDVDPDNPPEDLAELN-----PYGTVPTLV 53 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCC-----ccEEEEcCCCCCCHHHHhhC-----CCCCCCEEE
Confidence 45788999999999887755322 23444455443322222222 223899774
No 236
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=84.36 E-value=0.37 Score=39.55 Aligned_cols=62 Identities=18% Similarity=0.257 Sum_probs=41.9
Q ss_pred CceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEE-ECCCCccHHHHhCCCcCCCCCCCCEEEEEe
Q 030433 64 SRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIV-DLGLFPNAAEKFGISLGGSMGQLPTYILFE 133 (177)
Q Consensus 64 ~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v-d~~~~~~~~~~~~v~~~~~~~~~Ptlii~~ 133 (177)
.-++-..||++|||-.+..+|.++-...-+.. +....+ +....+...++|++. +.|+.++..
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~--i~h~~vee~~~lpsv~s~~~~~------~~ps~~~~n 138 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS--IQHFAVEESQALPSVFSSYGIH------SEPSNLMLN 138 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhccc--cccccHHHHhhcccchhccccc------cCCcceeec
Confidence 34588999999999999999998777766651 221122 222345667777777 777776654
No 237
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=82.64 E-value=2 Score=25.57 Aligned_cols=55 Identities=15% Similarity=0.057 Sum_probs=32.1
Q ss_pred EEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCcc--HHHHhCCCcCCCCCCCCEEEEEeCCEE
Q 030433 70 EFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPN--AAEKFGISLGGSMGQLPTYILFENNAE 137 (177)
Q Consensus 70 ~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~--~~~~~~v~~~~~~~~~Ptlii~~~G~~ 137 (177)
.|+.++|+.|.+.+-.++...- .+....++...... ..+..+-. .+|++.. +|..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i-----~~~~~~~~~~~~~~~~~~~~~~~~------~~P~l~~--~~~~ 59 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGL-----PYELVPVDLGEGEQEEFLALNPLG------KVPVLED--GGLV 59 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCC-----CcEEEEeCCCCCCCHHHHhcCCCC------CCCEEEE--CCEE
Confidence 4678899999998888766422 24455555443322 22223333 8997753 3543
No 238
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=80.20 E-value=9.6 Score=33.52 Aligned_cols=84 Identities=12% Similarity=0.158 Sum_probs=55.4
Q ss_pred hHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEEE
Q 030433 52 LQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYIL 131 (177)
Q Consensus 52 ~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii 131 (177)
+++.+.+++-.++ +-+.++.+-|..|..+...++++++-- +++++...+.+ . ..|++.+
T Consensus 8 ~~l~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~s--~~i~~~~~~~~-----------~------~~p~~~~ 66 (517)
T PRK15317 8 TQLKQYLELLERP--IELVASLDDSEKSAELKELLEEIASLS--DKITVEEDSLD-----------V------RKPSFSI 66 (517)
T ss_pred HHHHHHHHhCCCC--EEEEEEeCCCchHHHHHHHHHHHHHhC--CceEEEEccCC-----------C------CCCEEEE
Confidence 4555555542223 655555667999999999999998854 34555332211 3 4799999
Q ss_pred EeCCEEe-eeecCCCCCCcccccccc
Q 030433 132 FENNAEI-NRFPAFGFEEKFSHPHIT 156 (177)
Q Consensus 132 ~~~G~~~-~r~~g~~~~~~~~~~~~~ 156 (177)
.++|+.. -|+.|...-.++.+|...
T Consensus 67 ~~~~~~~~i~f~g~P~g~Ef~s~i~~ 92 (517)
T PRK15317 67 TRPGEDTGVRFAGIPMGHEFTSLVLA 92 (517)
T ss_pred EcCCccceEEEEecCccHHHHHHHHH
Confidence 8877543 578888888887776443
No 239
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=80.06 E-value=4.7 Score=28.16 Aligned_cols=35 Identities=11% Similarity=0.170 Sum_probs=25.4
Q ss_pred EEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCc
Q 030433 68 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP 109 (177)
Q Consensus 68 lV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~ 109 (177)
+..|+.+.|+.|+.....+++ .++.+-.+|+.+.+
T Consensus 2 i~iy~~p~C~~crkA~~~L~~-------~gi~~~~~d~~~~p 36 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEA-------AGHEVEVRDLLTEP 36 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cCCCcEEeehhcCC
Confidence 346889999999998877754 34666677766554
No 240
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=79.55 E-value=11 Score=26.07 Aligned_cols=81 Identities=14% Similarity=0.187 Sum_probs=52.5
Q ss_pred hHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCC--CccHHHHhCCCcCCCCCCCCE-
Q 030433 52 LQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL--FPNAAEKFGISLGGSMGQLPT- 128 (177)
Q Consensus 52 ~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~~~~~~~Pt- 128 (177)
.+|..++.- .++ |+|.|..+--..-..+ ..+.+++++..+ .=.+.-||++. ..-+|+++.+. |.++.-|.
T Consensus 10 KdfKKLLRT-r~N--VLvLy~ks~k~a~~~L-k~~~~~A~~vkG-~gT~~~vdCgd~e~kKLCKKlKv~--~~~kp~~~~ 82 (112)
T cd03067 10 KDFKKLLRT-RNN--VLVLYSKSAKSAEALL-KLLSDVAQAVKG-QGTIAWIDCGDSESRKLCKKLKVD--PSSKPKPVE 82 (112)
T ss_pred HHHHHHHhh-cCc--EEEEEecchhhHHHHH-HHHHHHHHHhcC-ceeEEEEecCChHHHHHHHHHccC--CCCCCCcch
Confidence 788888877 555 8888887654443333 467777777763 34567788875 67899999987 23333443
Q ss_pred EEEEeCCEEee
Q 030433 129 YILFENNAEIN 139 (177)
Q Consensus 129 lii~~~G~~~~ 139 (177)
+.=|++|.--.
T Consensus 83 LkHYKdG~fHk 93 (112)
T cd03067 83 LKHYKDGDFHT 93 (112)
T ss_pred hhcccCCCccc
Confidence 44457876433
No 241
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=78.58 E-value=23 Score=27.43 Aligned_cols=45 Identities=13% Similarity=0.119 Sum_probs=29.7
Q ss_pred CCCceEEEEEecCCCh-hhHHHhHHHHHHHHHhC---CCCcEEEEEECC
Q 030433 62 KTSRYWLVEFRAQCSS-TCIRASRIFPELSIAYS---NKNVSFGIVDLG 106 (177)
Q Consensus 62 ~~~~~vlV~F~a~wC~-~C~~~~p~l~~~~~~~~---~~~~~~~~vd~~ 106 (177)
-++++++|+|.=+.|| -|-.+...+..+.++.. ..++.++.+.+|
T Consensus 65 l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvD 113 (207)
T COG1999 65 LKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVD 113 (207)
T ss_pred cCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEEC
Confidence 4567799999977775 57777777777666665 234555555444
No 242
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=77.50 E-value=5.3 Score=24.72 Aligned_cols=51 Identities=16% Similarity=0.086 Sum_probs=31.7
Q ss_pred EEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCC----ccHHHHhCCCcCCCCCCCCEEE
Q 030433 69 VEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF----PNAAEKFGISLGGSMGQLPTYI 130 (177)
Q Consensus 69 V~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~----~~~~~~~~v~~~~~~~~~Ptli 130 (177)
..|+.++|+.|++.+-.+++.. -.+....+|.... +++.+..... .+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~g-----i~~e~~~i~~~~~~~~~~~~~~~~p~~------~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALG-----LELNLKEVNLMKGEHLKPEFLKLNPQH------TVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcC-----CCCEEEEecCccCCcCCHHHHhhCcCC------CCCEEE
Confidence 3578899999998887776642 2355556665332 2333333344 799995
No 243
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=76.66 E-value=15 Score=32.32 Aligned_cols=85 Identities=13% Similarity=0.185 Sum_probs=55.0
Q ss_pred hHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEEE
Q 030433 52 LQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYIL 131 (177)
Q Consensus 52 ~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii 131 (177)
+++.+.+++ -+. ++-+.++.+-|+.|..+...++++++.- +++++...+.+ .. ..|++.+
T Consensus 8 ~~l~~~~~~-~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~s--~ki~~~~~~~~----------~~------~~p~~~~ 67 (515)
T TIGR03140 8 AQLKSYLAS-LEN-PVTLVLSAGSHEKSKELLELLDEIASLS--DKISLTQNTAD----------TL------RKPSFTI 67 (515)
T ss_pred HHHHHHHHh-cCC-CEEEEEEeCCCchhHHHHHHHHHHHHhC--CCeEEEEecCC----------cC------CCCeEEE
Confidence 455555554 322 2545445446999999999999988854 34655433321 13 5799999
Q ss_pred EeCCEEe-eeecCCCCCCcccccccc
Q 030433 132 FENNAEI-NRFPAFGFEEKFSHPHIT 156 (177)
Q Consensus 132 ~~~G~~~-~r~~g~~~~~~~~~~~~~ 156 (177)
.++|+.. -|+.|...-.++.++...
T Consensus 68 ~~~~~~~~i~f~g~P~g~Ef~s~i~~ 93 (515)
T TIGR03140 68 LRDGADTGIRFAGIPGGHEFTSLVLA 93 (515)
T ss_pred ecCCcccceEEEecCCcHHHHHHHHH
Confidence 8777643 578888888877766444
No 244
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=76.46 E-value=22 Score=27.73 Aligned_cols=82 Identities=12% Similarity=0.220 Sum_probs=52.1
Q ss_pred CCCceEEEEEe-----cCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCc---------------------cHHHHh
Q 030433 62 KTSRYWLVEFR-----AQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP---------------------NAAEKF 115 (177)
Q Consensus 62 ~~~~~vlV~F~-----a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~---------------------~~~~~~ 115 (177)
++.+.++.+|. ..-|+.|..+...++-....+...+..|+.|.-.... .....|
T Consensus 66 Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~~i~afk~rmGW~~pw~Ss~gs~Fn~D~ 145 (211)
T PF05988_consen 66 GRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLEKIEAFKRRMGWTFPWYSSYGSDFNYDF 145 (211)
T ss_pred CCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHHHHHHHHHhcCCCceEEEcCCCcccccc
Confidence 45555666665 6889999999999965556566567888888754222 222334
Q ss_pred CCCcCCCCCCCCEEEEE-eCCEEeeeecCC
Q 030433 116 GISLGGSMGQLPTYILF-ENNAEINRFPAF 144 (177)
Q Consensus 116 ~v~~~~~~~~~Ptlii~-~~G~~~~r~~g~ 144 (177)
++... .....|.+-+| ++|..+.+...-
T Consensus 146 ~~~~~-~~~~~~g~svF~Rdg~~VfhTyst 174 (211)
T PF05988_consen 146 GVSFD-EGGEMPGLSVFLRDGGRVFHTYST 174 (211)
T ss_pred cceec-cCCCceeEEEEEEcCCEEEEEeec
Confidence 44211 12477877777 777777765544
No 245
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=74.90 E-value=5.4 Score=30.69 Aligned_cols=43 Identities=14% Similarity=0.178 Sum_probs=34.5
Q ss_pred CceEEEEEe-cCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECC
Q 030433 64 SRYWLVEFR-AQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLG 106 (177)
Q Consensus 64 ~~~vlV~F~-a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~ 106 (177)
++.+++.|| ++..+-|-.+...+.+..++++..|.+++.+++|
T Consensus 33 gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~D 76 (194)
T COG0450 33 GKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTD 76 (194)
T ss_pred CcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecC
Confidence 355667777 7888888888888888888888788888888876
No 246
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=74.75 E-value=16 Score=22.89 Aligned_cols=56 Identities=11% Similarity=0.068 Sum_probs=35.4
Q ss_pred EecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCC-ccHHHHhCCCcCCCCCCCCEEEEEeCCEEee
Q 030433 71 FRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF-PNAAEKFGISLGGSMGQLPTYILFENNAEIN 139 (177)
Q Consensus 71 F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~v~~~~~~~~~Ptlii~~~G~~~~ 139 (177)
++.++|+.|++.+=.++... -.+.+..++..+. ..+.+...-. .+|++. .+|..+.
T Consensus 2 y~~~~Sp~~~kv~~~l~~~~-----i~~~~~~v~~~~~~~~~~~~~p~~------~vPvL~--~~g~~l~ 58 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEKG-----IPYELVPVDPEEKRPEFLKLNPKG------KVPVLV--DDGEVLT 58 (75)
T ss_dssp EEETTSHHHHHHHHHHHHHT-----EEEEEEEEBTTSTSHHHHHHSTTS------BSSEEE--ETTEEEE
T ss_pred CCcCCChHHHHHHHHHHHcC-----CeEEEeccCcccchhHHHhhcccc------cceEEE--ECCEEEe
Confidence 67899999999987775432 2255566665543 2333334444 899997 5577544
No 247
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=74.15 E-value=7.9 Score=26.79 Aligned_cols=34 Identities=18% Similarity=0.159 Sum_probs=25.0
Q ss_pred EEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCc
Q 030433 69 VEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP 109 (177)
Q Consensus 69 V~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~ 109 (177)
..|+.+.|..|++....+++ .++.+..+|+.+.+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~-------~~i~~~~~di~~~~ 35 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEE-------AGIEPEIVEYLKTP 35 (112)
T ss_pred EEEECCCCHHHHHHHHHHHH-------CCCCeEEEecccCC
Confidence 46889999999998877754 24666677776554
No 248
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=72.68 E-value=34 Score=24.81 Aligned_cols=83 Identities=10% Similarity=0.027 Sum_probs=54.6
Q ss_pred CCCceEEEEEecCCChhhHHHhHHH---HHHHHHhCCCCcEEEEEECCCCc------------------cHHHHhCCCcC
Q 030433 62 KTSRYWLVEFRAQCSSTCIRASRIF---PELSIAYSNKNVSFGIVDLGLFP------------------NAAEKFGISLG 120 (177)
Q Consensus 62 ~~~~~vlV~F~a~wC~~C~~~~p~l---~~~~~~~~~~~~~~~~vd~~~~~------------------~~~~~~~v~~~ 120 (177)
...|+.+||.+++-...+..+.... +++.+-.+ .++.+-.-|+.... ...+.++..
T Consensus 19 ~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~-~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~-- 95 (136)
T cd02990 19 RDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLS-QNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTD-- 95 (136)
T ss_pred hhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHH-cCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcC--
Confidence 4567799999999886665554333 33444444 56888788876542 123445677
Q ss_pred CCCCCCCEEEEE-eCC---EEeeeecCCCCCCccc
Q 030433 121 GSMGQLPTYILF-ENN---AEINRFPAFGFEEKFS 151 (177)
Q Consensus 121 ~~~~~~Ptlii~-~~G---~~~~r~~g~~~~~~~~ 151 (177)
.+|.+.++ +.. ..+.++.|..+.+++.
T Consensus 96 ----~fP~~avI~~~~~~~~vl~~i~G~~~~~ell 126 (136)
T cd02990 96 ----QLPAILIIMGKRSSNEVLNVIQGNTGVDELL 126 (136)
T ss_pred ----CCCeEEEEEecCCceEEEEEEECCCCHHHHH
Confidence 89998888 332 6777888887766554
No 249
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=72.04 E-value=9.4 Score=26.52 Aligned_cols=35 Identities=11% Similarity=0.116 Sum_probs=26.0
Q ss_pred EEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCcc
Q 030433 69 VEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPN 110 (177)
Q Consensus 69 V~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~ 110 (177)
..|+.+.|..|++....+++ .++.+..+|+.+.+.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~-------~~i~~~~~di~~~p~ 36 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLED-------KGIEPEVVKYLKNPP 36 (114)
T ss_pred EEEECCCCHHHHHHHHHHHH-------CCCCeEEEeccCCCc
Confidence 46889999999999888865 246666777766553
No 250
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=71.59 E-value=13 Score=24.25 Aligned_cols=54 Identities=13% Similarity=0.092 Sum_probs=32.8
Q ss_pred EEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCcc-HHHHhCCCcCCCCCCCCEEEE
Q 030433 67 WLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPN-AAEKFGISLGGSMGQLPTYIL 131 (177)
Q Consensus 67 vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~~~~~~~Ptlii 131 (177)
.+..++.+.|+.|++.+-.++... -.+....+|.....+ +.+..... .+|++..
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~g-----l~~~~~~v~~~~~~~~~~~~np~~------~vPvL~~ 72 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAKN-----IPHEVININLKDKPDWFLEKNPQG------KVPALEI 72 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHcC-----CCCeEEEeCCCCCcHHHHhhCCCC------CcCEEEE
Confidence 445567888999998877775532 235556666544322 33333344 7999864
No 251
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=70.99 E-value=16 Score=22.91 Aligned_cols=57 Identities=19% Similarity=0.119 Sum_probs=33.4
Q ss_pred EEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCC----ccHHHHhCCCcCCCCCCCCEEEEEeCCEEe
Q 030433 69 VEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF----PNAAEKFGISLGGSMGQLPTYILFENNAEI 138 (177)
Q Consensus 69 V~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~----~~~~~~~~v~~~~~~~~~Ptlii~~~G~~~ 138 (177)
..|+.+.|+.|++.+-.+++.. -.+....+|.... +++.+-..- +.+|++. .+|..+
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~g-----l~~e~~~v~~~~~~~~~~~~~~inP~------g~vP~L~--~~g~~l 62 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKG-----LRCEEYDVSLPLSEHNEPWFMRLNPT------GEVPVLI--HGDNII 62 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcC-----CCCEEEEecCCcCccCCHHHHHhCcC------CCCCEEE--ECCEEE
Confidence 3577888999988875554432 3356666766432 223322233 3899985 466543
No 252
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=69.54 E-value=13 Score=27.21 Aligned_cols=62 Identities=15% Similarity=0.222 Sum_probs=42.3
Q ss_pred EEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEEEEeCCEEee
Q 030433 67 WLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEIN 139 (177)
Q Consensus 67 vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii~~~G~~~~ 139 (177)
-++.+++|.|+=|......++ .+++++-.+..+....+-++++|.- ...+-=|.+ -+|+-++
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk-------~~Gf~Vk~~~~~d~~alK~~~gIp~--e~~SCHT~V--I~Gy~vE 88 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMK-------ANGFEVKVVETDDFLALKRRLGIPY--EMQSCHTAV--INGYYVE 88 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHH-------hCCcEEEEeecCcHHHHHHhcCCCh--hhccccEEE--EcCEEEe
Confidence 578899999999998776664 2568887888777777888888762 222333333 3565544
No 253
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=66.98 E-value=17 Score=26.88 Aligned_cols=40 Identities=18% Similarity=0.175 Sum_probs=31.5
Q ss_pred EEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECC
Q 030433 67 WLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLG 106 (177)
Q Consensus 67 vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~ 106 (177)
.+.+|+..-||.|-...+.+.++.+++++-.+.+.-+.+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 3678999999999999999999999994444555555543
No 254
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=65.50 E-value=29 Score=24.08 Aligned_cols=45 Identities=13% Similarity=0.045 Sum_probs=37.5
Q ss_pred CCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCC
Q 030433 62 KTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL 107 (177)
Q Consensus 62 ~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~ 107 (177)
-++++++|.=-|+-|+.-. ....++++.++|.+.++.++..=+++
T Consensus 19 y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 19 YKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp GTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred cCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 5567788989999999888 77899999999998888887766554
No 255
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=65.22 E-value=16 Score=25.64 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=24.6
Q ss_pred EEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCc
Q 030433 68 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP 109 (177)
Q Consensus 68 lV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~ 109 (177)
+-.|+.+.|..|+.....+++ .++.+..+|+.+.+
T Consensus 3 itiy~~p~C~t~rka~~~L~~-------~gi~~~~~~y~~~~ 37 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEE-------HGIEYTFIDYLKTP 37 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------cCCCcEEEEeecCC
Confidence 456889999999999988865 23555555655443
No 256
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=63.75 E-value=24 Score=24.48 Aligned_cols=70 Identities=16% Similarity=0.291 Sum_probs=38.8
Q ss_pred hhHHHHHHhcCC-CCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEE
Q 030433 51 PLQLEALLTEGK-TSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTY 129 (177)
Q Consensus 51 ~~~~~~~l~~~~-~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptl 129 (177)
.+.+...+.+.. .+ +.+.|-.---+.=+.....+.++..+-.. . .++.=+|.+.++|+|+ .+|++
T Consensus 10 ~~~L~~l~~~a~~~~--~~~V~RG~~~g~~~~t~~~~~~l~~~~~~-~-----~~v~IdP~~F~~y~I~------~VPa~ 75 (113)
T PF09673_consen 10 DASLRNLLKQAERAG--VVVVFRGFPDGSFKPTAKAIQELLRKDDP-C-----PGVQIDPRLFRQYNIT------AVPAF 75 (113)
T ss_pred HHHHHHHHHHHHhCC--cEEEEECCCCCCHHHHHHHHHHHhhccCC-C-----cceeEChhHHhhCCce------EcCEE
Confidence 455555443211 13 44555544333333333344444443321 1 2333468899999999 99999
Q ss_pred EEEeC
Q 030433 130 ILFEN 134 (177)
Q Consensus 130 ii~~~ 134 (177)
++.++
T Consensus 76 V~~~~ 80 (113)
T PF09673_consen 76 VVVKD 80 (113)
T ss_pred EEEcC
Confidence 99988
No 257
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=62.43 E-value=7.7 Score=27.93 Aligned_cols=24 Identities=17% Similarity=0.535 Sum_probs=21.4
Q ss_pred CCccHHHHhCCCcCCCCCCCCEEEEEeCCE
Q 030433 107 LFPNAAEKFGISLGGSMGQLPTYILFENNA 136 (177)
Q Consensus 107 ~~~~~~~~~~v~~~~~~~~~Ptlii~~~G~ 136 (177)
=+|.+.++|+|+ .+|++++.+++.
T Consensus 59 IdP~lF~~f~I~------~VPa~V~~~~~~ 82 (130)
T TIGR02742 59 IDPQWFKQFDIT------AVPAFVVVKDGL 82 (130)
T ss_pred EChHHHhhcCce------EcCEEEEECCCC
Confidence 368899999999 999999998874
No 258
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=61.37 E-value=24 Score=24.11 Aligned_cols=32 Identities=22% Similarity=0.447 Sum_probs=21.6
Q ss_pred EecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCc
Q 030433 71 FRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP 109 (177)
Q Consensus 71 F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~ 109 (177)
|+.+.|..|+.....+++ .++.+..+|+.+.+
T Consensus 1 Y~~~~C~t~rka~~~L~~-------~gi~~~~~d~~k~p 32 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEE-------NGIEYEFIDYKKEP 32 (110)
T ss_dssp EE-TT-HHHHHHHHHHHH-------TT--EEEEETTTS-
T ss_pred CcCCCCHHHHHHHHHHHH-------cCCCeEeehhhhCC
Confidence 577899999999988865 34777788887654
No 259
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=61.19 E-value=24 Score=27.47 Aligned_cols=37 Identities=16% Similarity=0.093 Sum_probs=27.2
Q ss_pred ceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEE
Q 030433 65 RYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFG 101 (177)
Q Consensus 65 ~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~ 101 (177)
...++.|....||+|+...|.+++........++.+.
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~~~~~ 121 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKKKYIDDGKVRLVLR 121 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHHHhhhcCCCceEEE
Confidence 4588999999999999888988885555543333333
No 260
>PRK10853 putative reductase; Provisional
Probab=61.04 E-value=20 Score=25.16 Aligned_cols=35 Identities=11% Similarity=0.185 Sum_probs=25.4
Q ss_pred EEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCc
Q 030433 68 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP 109 (177)
Q Consensus 68 lV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~ 109 (177)
+..|+.+.|..|+.....|++ .++.+..+|+-+.+
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~-------~~i~~~~~d~~k~p 36 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEA-------QGIDYRFHDYRVDG 36 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHH-------cCCCcEEeehccCC
Confidence 346788999999999988865 24666667765544
No 261
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=59.42 E-value=14 Score=27.41 Aligned_cols=27 Identities=19% Similarity=0.269 Sum_probs=24.6
Q ss_pred EEEEecCCChhhHHHhHHHHHHHHHhC
Q 030433 68 LVEFRAQCSSTCIRASRIFPELSIAYS 94 (177)
Q Consensus 68 lV~F~a~wC~~C~~~~p~l~~~~~~~~ 94 (177)
+.+|+.+.||.|-...+.+.++.++++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 568889999999999999999999984
No 262
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=58.89 E-value=20 Score=28.43 Aligned_cols=47 Identities=17% Similarity=0.265 Sum_probs=36.7
Q ss_pred HhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCC---CCcEEEEEEC
Q 030433 58 LTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSN---KNVSFGIVDL 105 (177)
Q Consensus 58 l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~---~~~~~~~vd~ 105 (177)
+.+ ..+++++|-+-..+|..|......++.+..++.. .++.|+.||-
T Consensus 21 m~~-~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~ 70 (238)
T PF04592_consen 21 MLN-SLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNH 70 (238)
T ss_pred hhh-cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcC
Confidence 444 5566788889989999999999999888876643 3588888884
No 263
>PRK10026 arsenate reductase; Provisional
Probab=56.13 E-value=31 Score=25.13 Aligned_cols=36 Identities=8% Similarity=0.048 Sum_probs=25.5
Q ss_pred EEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCc
Q 030433 67 WLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP 109 (177)
Q Consensus 67 vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~ 109 (177)
-+..|+.+.|..|+.....|++- ++.+..+|+-+.+
T Consensus 3 ~i~iY~~p~Cst~RKA~~wL~~~-------gi~~~~~d~~~~p 38 (141)
T PRK10026 3 NITIYHNPACGTSRNTLEMIRNS-------GTEPTIIHYLETP 38 (141)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHC-------CCCcEEEeeeCCC
Confidence 35568889999999999888652 3666666665443
No 264
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=56.03 E-value=60 Score=21.81 Aligned_cols=65 Identities=18% Similarity=0.270 Sum_probs=40.3
Q ss_pred hhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEE
Q 030433 51 PLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYI 130 (177)
Q Consensus 51 ~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptli 130 (177)
.++++..+.. .+. ++|-|..+--. .....+.++++.+. .++.|+... ...+..++++. |+++
T Consensus 8 ~~~l~~f~~~-~~~--~Vvg~f~~~~~---~~~~~F~~vA~~~R-~d~~F~~~~---~~~~~~~~~~~--------~~iv 69 (104)
T cd03069 8 EAEFEKFLSD-DDA--SVVGFFEDEDS---KLLSEFLKAADTLR-ESFRFAHTS---DKQLLEKYGYG--------EGVV 69 (104)
T ss_pred HHHHHHHhcc-CCc--EEEEEEcCCCc---hHHHHHHHHHHhhh-hcCEEEEEC---hHHHHHhcCCC--------CceE
Confidence 4667776765 433 66666655333 35567778888775 457886554 34566667553 6777
Q ss_pred EEe
Q 030433 131 LFE 133 (177)
Q Consensus 131 i~~ 133 (177)
+|+
T Consensus 70 l~~ 72 (104)
T cd03069 70 LFR 72 (104)
T ss_pred EEe
Confidence 883
No 265
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=55.74 E-value=35 Score=24.28 Aligned_cols=34 Identities=6% Similarity=0.057 Sum_probs=24.4
Q ss_pred EEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCC
Q 030433 68 LVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF 108 (177)
Q Consensus 68 lV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~ 108 (177)
+..|+-+.|..|++....|++ .++.+-.+|+-+.
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~-------~gi~~~~~d~~~~ 36 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKA-------SGHDVEVQDILKE 36 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CCCCcEEEeccCC
Confidence 456778999999999888865 2455666666544
No 266
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=54.77 E-value=7.6 Score=28.80 Aligned_cols=33 Identities=21% Similarity=0.336 Sum_probs=24.7
Q ss_pred CCccHHHHhCCCcCCCCCCCCEEEEEeCCEEeeeecCCCCCCc
Q 030433 107 LFPNAAEKFGISLGGSMGQLPTYILFENNAEINRFPAFGFEEK 149 (177)
Q Consensus 107 ~~~~~~~~~~v~~~~~~~~~Ptlii~~~G~~~~r~~g~~~~~~ 149 (177)
++...+.++++. |+|++++ +|+ ..+.|.++.+.
T Consensus 155 ~~~~~a~~~gv~------GvP~~vv--~g~--~~~~G~~~~~~ 187 (193)
T PF01323_consen 155 EDTAEARQLGVF------GVPTFVV--NGK--YRFFGADRLDE 187 (193)
T ss_dssp HHHHHHHHTTCS------SSSEEEE--TTT--EEEESCSSHHH
T ss_pred HHHHHHHHcCCc------ccCEEEE--CCE--EEEECCCCHHH
Confidence 345667889999 9999999 776 56667765443
No 267
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=52.69 E-value=50 Score=19.91 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=31.7
Q ss_pred EEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCC----ccHHHHhCCCcCCCCCCCCEEEEEeCCEE
Q 030433 70 EFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF----PNAAEKFGISLGGSMGQLPTYILFENNAE 137 (177)
Q Consensus 70 ~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~----~~~~~~~~v~~~~~~~~~Ptlii~~~G~~ 137 (177)
.|+.+.|+.|++.+-.++... -.++...+|.... +...+...- +.+|++.. +|..
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~p~------~~vP~l~~--~~~~ 61 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALLG-----IPYEWVEVDILKGETRTPEFLALNPN------GEVPVLEL--DGRV 61 (73)
T ss_pred EEeCCCCccHHHHHHHHHHcC-----CCcEEEEecCCCcccCCHHHHHhCCC------CCCCEEEE--CCEE
Confidence 477889999998887776542 2355555654322 122222223 37999864 4543
No 268
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=48.80 E-value=90 Score=21.74 Aligned_cols=79 Identities=11% Similarity=0.060 Sum_probs=49.1
Q ss_pred EEEEEe-cCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCC-Cc-----------cHHHHhCCCcCCCCCCCCEEEEE-
Q 030433 67 WLVEFR-AQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGL-FP-----------NAAEKFGISLGGSMGQLPTYILF- 132 (177)
Q Consensus 67 vlV~F~-a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~-~~-----------~~~~~~~v~~~~~~~~~Ptlii~- 132 (177)
++|.|- +..-+.=+.....+.+-...+...++.++.+--+. .. .+.++|++.. +--+++++
T Consensus 12 ~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~-----~~f~~vLiG 86 (118)
T PF13778_consen 12 LLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPP-----GGFTVVLIG 86 (118)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCC-----CceEEEEEe
Confidence 556565 34455566667777775566666677776663221 12 5677888662 33456666
Q ss_pred eCCEEeeeecCCCCCCcc
Q 030433 133 ENNAEINRFPAFGFEEKF 150 (177)
Q Consensus 133 ~~G~~~~r~~g~~~~~~~ 150 (177)
++|.+..|.....+.+++
T Consensus 87 KDG~vK~r~~~p~~~~~l 104 (118)
T PF13778_consen 87 KDGGVKLRWPEPIDPEEL 104 (118)
T ss_pred CCCcEEEecCCCCCHHHH
Confidence 899998887777654443
No 269
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=48.30 E-value=60 Score=19.77 Aligned_cols=57 Identities=11% Similarity=0.111 Sum_probs=30.3
Q ss_pred EEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCC-ccHHHHhCCCcCCCCCCCCEEEEEeCCE
Q 030433 70 EFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF-PNAAEKFGISLGGSMGQLPTYILFENNA 136 (177)
Q Consensus 70 ~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~v~~~~~~~~~Ptlii~~~G~ 136 (177)
.|+.+.|+.|.+.+-.+..... + -.+....+|.... ++..+..... .+|++.. .+|.
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~~--~-i~~~~~~~~~~~~~~~~~~~~p~~------~vP~l~~-~~g~ 60 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETGL--G-DDVELVLVNPWSDDESLLAVNPLG------KIPALVL-DDGE 60 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhCC--C-CCcEEEEcCcccCChHHHHhCCCC------CCCEEEE-CCCC
Confidence 4678889999988776654211 1 2245555553322 2333322333 7897753 3453
No 270
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=47.68 E-value=33 Score=21.15 Aligned_cols=56 Identities=18% Similarity=0.186 Sum_probs=31.5
Q ss_pred EEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCC----ccHHHHhCCCcCCCCCCCCEEEEEeCCEE
Q 030433 69 VEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF----PNAAEKFGISLGGSMGQLPTYILFENNAE 137 (177)
Q Consensus 69 V~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~----~~~~~~~~v~~~~~~~~~Ptlii~~~G~~ 137 (177)
-.|+.+.|+.|++.+-.++...- .+....++.... +...+..... .+|++. .+|..
T Consensus 3 ~Ly~~~~s~~s~~v~~~l~~~~i-----~~~~~~~~~~~~~~~~~~~~~~~P~~------~vP~l~--~~g~~ 62 (76)
T cd03053 3 KLYGAAMSTCVRRVLLCLEEKGV-----DYELVPVDLTKGEHKSPEHLARNPFG------QIPALE--DGDLK 62 (76)
T ss_pred EEEeCCCChhHHHHHHHHHHcCC-----CcEEEEeCccccccCCHHHHhhCCCC------CCCEEE--ECCEE
Confidence 44556779999988877765422 245555554322 2233333333 899874 35543
No 271
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=47.14 E-value=1.1e+02 Score=22.18 Aligned_cols=94 Identities=13% Similarity=0.012 Sum_probs=50.1
Q ss_pred eecChhHHHHHHhcCCCCceEEEEEecCCChhhH-HHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCC
Q 030433 47 NKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCI-RASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQ 125 (177)
Q Consensus 47 ~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~-~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~ 125 (177)
.-.|.++.++.+.+ .++ .-+.+-.+-|+=-- ..+|........ ..+-=.++.|=.+++.+...+..--..+-.-+
T Consensus 20 eL~T~e~Vd~~~~~-~~G--TtlVvVNSVCGCAag~ARPa~~~al~~-~kkPD~lvTVFAGqDkEAt~~aR~yf~~~pPS 95 (136)
T PF06491_consen 20 ELTTAEEVDEALKN-KEG--TTLVVVNSVCGCAAGNARPAAAMALQN-DKKPDHLVTVFAGQDKEATAKAREYFEPYPPS 95 (136)
T ss_dssp E--SHHHHHHHHHH---S--EEEEEEE-SSHHHHHTHHHHHHHHHHH-SS--SEEEEEETTTSHHHHHHHHHTSTTS---
T ss_pred ccCCHHHHHHHHhC-CCC--cEEEEEeccccccccccCHHHHHHHhC-CCCCCceEEeccCCCHHHHHHHHHhcCCCCCC
Confidence 33456889999985 444 44455677887333 345665444332 32335567776777766543321111111226
Q ss_pred CCEEEEEeCCEEeeeecCC
Q 030433 126 LPTYILFENNAEINRFPAF 144 (177)
Q Consensus 126 ~Ptlii~~~G~~~~r~~g~ 144 (177)
-|++.+||+|+.+.-+..-
T Consensus 96 SPS~ALfKdGelvh~ieRh 114 (136)
T PF06491_consen 96 SPSIALFKDGELVHFIERH 114 (136)
T ss_dssp SSEEEEEETTEEEEEE-GG
T ss_pred CchheeeeCCEEEEEeehh
Confidence 7999999999988755433
No 272
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=45.46 E-value=78 Score=21.12 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=16.7
Q ss_pred hCCCCcEEEEEECCCCccHHHHh
Q 030433 93 YSNKNVSFGIVDLGLFPNAAEKF 115 (177)
Q Consensus 93 ~~~~~~~~~~vd~~~~~~~~~~~ 115 (177)
+...++.|-.+|++.+++..+.+
T Consensus 26 L~~k~I~f~eiDI~~d~~~r~em 48 (92)
T cd03030 26 LEAKKIEFEEVDISMNEENRQWM 48 (92)
T ss_pred HHHCCCceEEEecCCCHHHHHHH
Confidence 33456999999999877665554
No 273
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=45.35 E-value=21 Score=26.49 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=18.0
Q ss_pred ccHHHHhCCCcCCCCCCCCEEEEEeCCE
Q 030433 109 PNAAEKFGISLGGSMGQLPTYILFENNA 136 (177)
Q Consensus 109 ~~~~~~~~v~~~~~~~~~Ptlii~~~G~ 136 (177)
...+.+.+|. ++||+++.+++.
T Consensus 159 ~~~a~~~gv~------g~Ptfvv~~~~~ 180 (193)
T cd03025 159 QKLARELGIN------GFPTLVLEDDNG 180 (193)
T ss_pred HHHHHHcCCC------ccCEEEEEeCCe
Confidence 4556778999 999999998776
No 274
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=41.81 E-value=15 Score=26.71 Aligned_cols=24 Identities=21% Similarity=0.474 Sum_probs=18.5
Q ss_pred CccHHHHhCCCcCCCCCCCCEEEEEeCCEEee
Q 030433 108 FPNAAEKFGISLGGSMGQLPTYILFENNAEIN 139 (177)
Q Consensus 108 ~~~~~~~~~v~~~~~~~~~Ptlii~~~G~~~~ 139 (177)
+...+.+++|. ++||+++ ||+.+.
T Consensus 132 ~~~~~~~~gi~------gTPt~iI--nG~~~~ 155 (178)
T cd03019 132 AEKLAKKYKIT------GVPAFVV--NGKYVV 155 (178)
T ss_pred HHHHHHHcCCC------CCCeEEE--CCEEEE
Confidence 34567788999 9999998 777444
No 275
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=41.34 E-value=16 Score=28.01 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=17.1
Q ss_pred cHHHHhCCCcCCCCCCCCEEEEEeCCEEee
Q 030433 110 NAAEKFGISLGGSMGQLPTYILFENNAEIN 139 (177)
Q Consensus 110 ~~~~~~~v~~~~~~~~~Ptlii~~~G~~~~ 139 (177)
..+++++|+ ++||+++ ||+-+-
T Consensus 158 ~~a~~~gI~------gtPtfiI--nGky~v 179 (207)
T PRK10954 158 KAAADLQLR------GVPAMFV--NGKYMV 179 (207)
T ss_pred HHHHHcCCC------CCCEEEE--CCEEEE
Confidence 456788999 9999998 777533
No 276
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=41.31 E-value=27 Score=23.72 Aligned_cols=59 Identities=14% Similarity=0.166 Sum_probs=33.3
Q ss_pred EecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEEE-EeCCE
Q 030433 71 FRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYIL-FENNA 136 (177)
Q Consensus 71 F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii-~~~G~ 136 (177)
||-.+||-|......+.+... ...+.|+.+.-.....+.+.++++. ....+.+. .++|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~---~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR---GGRLRFVDIQSEPDQALLASYGISP----EDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC---CCCEEEEECCChhhhhHHHhcCcCH----HHHcCeeEEecCCC
Confidence 788999999999999877622 1335554442222333345555541 12333333 46776
No 277
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=40.99 E-value=49 Score=23.17 Aligned_cols=52 Identities=15% Similarity=0.263 Sum_probs=34.3
Q ss_pred CChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHH-HHhC--CCcCCCCCCCCEEEEEeC
Q 030433 75 CSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAA-EKFG--ISLGGSMGQLPTYILFEN 134 (177)
Q Consensus 75 wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~-~~~~--v~~~~~~~~~Ptlii~~~ 134 (177)
.|++|..++-.+...-. .. ..+.+.+|+..+..... ...+ -+ +.|++++=.+
T Consensus 23 ~Cp~c~~iEGlLa~~P~-l~-~~ldV~rV~f~RPR~~vi~llGE~~Q------slPvLVL~~~ 77 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPD-LR-ERLDVRRVDFPRPRQAVIALLGEANQ------SLPVLVLADG 77 (112)
T ss_pred ECCchHHHHhHHhhChh-hh-hcccEEEeCCCCchHHHHHHhChhcc------CCCEEEeCCC
Confidence 39999999988755433 22 35888999988764332 2222 34 8898877654
No 278
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=40.63 E-value=46 Score=21.12 Aligned_cols=50 Identities=8% Similarity=0.083 Sum_probs=27.7
Q ss_pred cCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEE
Q 030433 73 AQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYI 130 (177)
Q Consensus 73 a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptli 130 (177)
.+||+.|.+.+-.+....- .+....++..........+++. ..+.+|++.
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i-----~~~~~~~~~~~~~~~~~~~~~~---p~~~vP~L~ 62 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGL-----EYKTVPVEFPDIPPILGELTSG---GFYTVPVIV 62 (84)
T ss_pred CCcCChhHHHHHHHHhCCC-----CCeEEEecCCCcccccccccCC---CCceeCeEE
Confidence 3789999998887755322 2445555544333322222221 234789874
No 279
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=39.88 E-value=1e+02 Score=23.30 Aligned_cols=61 Identities=11% Similarity=0.191 Sum_probs=36.2
Q ss_pred EEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEEEEeCCEEee
Q 030433 67 WLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEIN 139 (177)
Q Consensus 67 vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii~~~G~~~~ 139 (177)
.+-.|+.++|+.|.+..=.+++.. -.+....+|....+.-..+.+ ..+.+|++. .+|..+.
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~g-----l~~e~~~v~~~~~~~~~~~~n-----P~g~VPvL~--~~g~~l~ 70 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKG-----VSVEIEQVEKDNLPQDLIDLN-----PYQSVPTLV--DRELTLY 70 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCC-----CCCEEEeCCcccCCHHHHHhC-----CCCCCCEEE--ECCEEee
Confidence 455666788999999887665532 336666777654332222222 224899996 4565443
No 280
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=36.46 E-value=1e+02 Score=18.80 Aligned_cols=57 Identities=14% Similarity=0.084 Sum_probs=31.4
Q ss_pred EEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEEEEeCCEE
Q 030433 70 EFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAE 137 (177)
Q Consensus 70 ~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii~~~G~~ 137 (177)
.++.+.|+.|.+.+-.++...- .+....+|....+....+.+- ..+.+|++. .+|..
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~gl-----~~~~~~~~~~~~~~~~~~~~p----~~~~vP~l~--~~~~~ 59 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKGV-----PYEYVEEDLGNKSELLLASNP----VHKKIPVLL--HNGKP 59 (74)
T ss_pred EEECCCCchHHHHHHHHHHcCC-----CCEEEEeCcccCCHHHHHhCC----CCCCCCEEE--ECCEE
Confidence 4567889999998887765422 244444554322222223322 123899885 34543
No 281
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=34.43 E-value=27 Score=27.59 Aligned_cols=33 Identities=18% Similarity=0.360 Sum_probs=23.5
Q ss_pred cHHHHhCCCcCCCCCCCCEEEEEeCCEEeeeecCCCCCCcccc
Q 030433 110 NAAEKFGISLGGSMGQLPTYILFENNAEINRFPAFGFEEKFSH 152 (177)
Q Consensus 110 ~~~~~~~v~~~~~~~~~Ptlii~~~G~~~~r~~g~~~~~~~~~ 152 (177)
..+++.+|+ ++|++++ +|+ ....|.++.+.+.+
T Consensus 175 ~~A~e~gI~------gVP~fv~--d~~--~~V~Gaq~~~v~~~ 207 (225)
T COG2761 175 AAAQEMGIR------GVPTFVF--DGK--YAVSGAQPYDVLED 207 (225)
T ss_pred HHHHHCCCc------cCceEEE--cCc--EeecCCCCHHHHHH
Confidence 456788999 9999999 333 34558877775544
No 282
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=34.13 E-value=1.5e+02 Score=20.08 Aligned_cols=68 Identities=9% Similarity=0.132 Sum_probs=42.4
Q ss_pred hhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEE
Q 030433 51 PLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYI 130 (177)
Q Consensus 51 ~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptli 130 (177)
.++++..+.. .... ++|-|..+--+ .....+.++++.+. ..+.|+... ...+.+++++. -|.++
T Consensus 8 ~~ele~f~~~-~~~~-~VVG~F~~~~~---~~~~~F~~vA~~~R-dd~~F~~t~---~~~~~~~~~~~-------~~~vv 71 (107)
T cd03068 8 LKQVQEFLRD-GDDV-IIIGVFSGEED---PAYQLYQDAANSLR-EDYKFHHTF---DSEIFKSLKVS-------PGQLV 71 (107)
T ss_pred HHHHHHHHhc-CCCE-EEEEEECCCCC---HHHHHHHHHHHhcc-cCCEEEEEC---hHHHHHhcCCC-------CCceE
Confidence 4667777766 3122 55555554333 35566778888876 458885543 34677788886 57777
Q ss_pred EEeC
Q 030433 131 LFEN 134 (177)
Q Consensus 131 i~~~ 134 (177)
+|+.
T Consensus 72 l~rp 75 (107)
T cd03068 72 VFQP 75 (107)
T ss_pred EECc
Confidence 7744
No 283
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=34.05 E-value=1.1e+02 Score=18.54 Aligned_cols=16 Identities=13% Similarity=0.355 Sum_probs=13.2
Q ss_pred cCCChhhHHHhHHHHH
Q 030433 73 AQCSSTCIRASRIFPE 88 (177)
Q Consensus 73 a~wC~~C~~~~p~l~~ 88 (177)
.++|+.|.+.+-.++.
T Consensus 13 ~s~sp~~~~v~~~L~~ 28 (72)
T cd03054 13 PSLSPECLKVETYLRM 28 (72)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 3699999999888755
No 284
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.00 E-value=87 Score=24.15 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=34.6
Q ss_pred ecChhHH--HHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEE
Q 030433 48 KLTPLQL--EALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVD 104 (177)
Q Consensus 48 ~l~~~~~--~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd 104 (177)
..+++++ .++-++ ... ++.-.--+-|--|+.....|.++..-....++..+.+-
T Consensus 36 ~~rg~~vp~~~L~~~-~~a--vV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg 91 (197)
T KOG4498|consen 36 DSRGESVPVTSLFKE-RSA--VVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVG 91 (197)
T ss_pred hhcCceeehHHhhhc-CCe--EEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 3344555 233334 443 77777789999999999988887554444456555553
No 285
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=32.42 E-value=42 Score=26.10 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=20.3
Q ss_pred cHHHHhCCCcCCCCCCCCEEEEEeCCEEee
Q 030433 110 NAAEKFGISLGGSMGQLPTYILFENNAEIN 139 (177)
Q Consensus 110 ~~~~~~~v~~~~~~~~~Ptlii~~~G~~~~ 139 (177)
.+.+++++. ++||+++-+||+..-
T Consensus 165 ~l~~rlg~~------GfPTl~le~ng~~~~ 188 (212)
T COG3531 165 RLMQRLGAA------GFPTLALERNGTMYV 188 (212)
T ss_pred HHHHHhccC------CCCeeeeeeCCceEe
Confidence 356788999 999999999998754
No 286
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=32.26 E-value=1.5e+02 Score=19.67 Aligned_cols=53 Identities=15% Similarity=0.087 Sum_probs=31.2
Q ss_pred CCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCCEEEEEeCCEEe
Q 030433 74 QCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLPTYILFENNAEI 138 (177)
Q Consensus 74 ~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~Ptlii~~~G~~~ 138 (177)
.+|+.|++.+=.+.+. +-.+....+|....++.-.+.+-. +.+|++. .+|..+
T Consensus 20 g~cpf~~rvrl~L~eK-----gi~ye~~~vd~~~~p~~~~~~nP~-----g~vPvL~--~~~~~i 72 (91)
T cd03061 20 GNCPFCQRLFMVLWLK-----GVVFNVTTVDMKRKPEDLKDLAPG-----TQPPFLL--YNGEVK 72 (91)
T ss_pred CCChhHHHHHHHHHHC-----CCceEEEEeCCCCCCHHHHHhCCC-----CCCCEEE--ECCEEe
Confidence 5799999888777553 123555667766555444333322 3899665 455543
No 287
>PF13153 DUF3985: Protein of unknown function (DUF3985)
Probab=32.13 E-value=99 Score=17.40 Aligned_cols=11 Identities=27% Similarity=0.452 Sum_probs=6.7
Q ss_pred hHHHHHHHHHH
Q 030433 3 FYAKLLLVAIA 13 (177)
Q Consensus 3 ~~~~~~~~~~~ 13 (177)
.++||+-+++.
T Consensus 15 v~~kvayvalk 25 (44)
T PF13153_consen 15 VFFKVAYVALK 25 (44)
T ss_pred HHHHHHHHHHH
Confidence 45677666654
No 288
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=31.39 E-value=1.4e+02 Score=23.11 Aligned_cols=34 Identities=26% Similarity=0.352 Sum_probs=23.9
Q ss_pred EEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECC
Q 030433 70 EFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLG 106 (177)
Q Consensus 70 ~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~ 106 (177)
.|.+..|+.|=.....+.++.++ .++-.+...++
T Consensus 4 LFTSQGCsSCPpAD~~L~~l~~~---~~Vi~LafHVD 37 (202)
T PF06764_consen 4 LFTSQGCSSCPPADRLLSELAAR---PDVIALAFHVD 37 (202)
T ss_dssp EEE-TT-TT-HHHHHHHHHHHHH---TSSEEEEEE-S
T ss_pred EecCCCCCCCcHHHHHHHHhhcC---CCEEEEEecCC
Confidence 58899999999999999999998 24666555554
No 289
>PF14851 FAM176: FAM176 family
Probab=31.14 E-value=63 Score=23.97 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=22.1
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHh
Q 030433 10 VAIASIMDYHLALWFLVVFLVIYILT 35 (177)
Q Consensus 10 ~~~~~~~~~~~~~l~~l~~~~~~~~~ 35 (177)
++|+|+++.=+++++.+.++++-+.+
T Consensus 22 ~aLYFv~gVC~GLlLtLcllV~risc 47 (153)
T PF14851_consen 22 FALYFVSGVCAGLLLTLCLLVIRISC 47 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 67899999999888888888887777
No 290
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=31.10 E-value=1.3e+02 Score=22.55 Aligned_cols=56 Identities=11% Similarity=0.014 Sum_probs=37.6
Q ss_pred eecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECC
Q 030433 47 NKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLG 106 (177)
Q Consensus 47 ~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~ 106 (177)
..++++.+ .+++ -++++++|.=.|+-|+--- ....|+.+.++|++.++.++..=++
T Consensus 11 ~~~~G~~~--~l~~-~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcN 66 (162)
T COG0386 11 KDIDGEPV--SLSD-YKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCN 66 (162)
T ss_pred eccCCCCc--cHHH-hCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEecccc
Confidence 34444433 2344 5566788889999998554 3345677888898888887776554
No 291
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=30.85 E-value=52 Score=24.99 Aligned_cols=42 Identities=10% Similarity=0.074 Sum_probs=21.8
Q ss_pred ceEEEEEe-cCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECC
Q 030433 65 RYWLVEFR-AQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLG 106 (177)
Q Consensus 65 ~~vlV~F~-a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~ 106 (177)
++++++|| +...|.|-+..=-|.+-.++++..+..++.+..+
T Consensus 91 k~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D 133 (211)
T KOG0855|consen 91 KPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGD 133 (211)
T ss_pred CcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccC
Confidence 35888888 5556777665433333333333223444444433
No 292
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=29.23 E-value=2.1e+02 Score=20.75 Aligned_cols=66 Identities=14% Similarity=0.068 Sum_probs=45.4
Q ss_pred eEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCcCCCCCCCC-EEEEEeCCEEee
Q 030433 66 YWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISLGGSMGQLP-TYILFENNAEIN 139 (177)
Q Consensus 66 ~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~~~~~~~P-tlii~~~G~~~~ 139 (177)
+-.|.+|--.|+-|-.....+.+.- .+..+.|..+..+....+.+..++.. .-+ ++++.++|+...
T Consensus 8 p~~vvlyDG~C~lC~~~vrfLi~~D---~~~~i~f~~~q~e~g~~~l~~~~l~~-----~~~~s~~~~~~g~~~~ 74 (137)
T COG3011 8 PDLVVLYDGVCPLCDGWVRFLIRRD---QGGRIRFAALQSEPGQALLEAAGLDP-----EDVDSVLLVEAGQLLV 74 (137)
T ss_pred CCEEEEECCcchhHHHHHHHHHHhc---cCCcEEEEeccCchhhhHHhhcCCCh-----hhhheeeEecCCceEe
Confidence 3678889999999999887775532 33568888887666667777777763 224 344447777644
No 293
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=27.94 E-value=2.5e+02 Score=23.52 Aligned_cols=103 Identities=16% Similarity=0.166 Sum_probs=48.6
Q ss_pred eeecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHh-CCCcCCCCC
Q 030433 46 SNKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKF-GISLGGSMG 124 (177)
Q Consensus 46 ~~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~-~v~~~~~~~ 124 (177)
+..++..+.+..-.+ .+.+|..|+|.+.-- |.+++..+.-. ..+...+- .....+.+-.+ ...
T Consensus 136 I~pi~enQ~~fehlq-~Rhq~ffVf~Gtge~-------PL~d~fidAAS-e~~~~a~F-fSaseeVaPe~~~~k------ 199 (468)
T KOG4277|consen 136 IEPINENQIEFEHLQ-ARHQPFFVFFGTGEG-------PLFDAFIDAAS-EKFSVARF-FSASEEVAPEENDAK------ 199 (468)
T ss_pred eeecChhHHHHHHHh-hccCceEEEEeCCCC-------cHHHHHHHHhh-hheeeeee-eccccccCCcccchh------
Confidence 455666555433223 344558898886543 34444333222 22333222 12222232222 333
Q ss_pred CCCEEEEEeCCEEeeeecCCCCCCcccccccchHhHhhhccch
Q 030433 125 QLPTYILFENNAEINRFPAFGFEEKFSHPHITKKLIAHHFQLD 167 (177)
Q Consensus 125 ~~Ptlii~~~G~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~ 167 (177)
..|.+.+|++..- .+.-....+.+.+| ++++-+...+.-+
T Consensus 200 empaV~VFKDetf--~i~de~dd~dLseW-inRERf~~fLa~d 239 (468)
T KOG4277|consen 200 EMPAVAVFKDETF--EIEDEGDDEDLSEW-INRERFPGFLAAD 239 (468)
T ss_pred hccceEEEcccee--EEEecCchhHHHHH-HhHhhccchhhcc
Confidence 7899999987632 22233344556666 3333343433333
No 294
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=26.72 E-value=1.1e+02 Score=23.05 Aligned_cols=48 Identities=13% Similarity=0.052 Sum_probs=36.8
Q ss_pred HhcCCCCceEEEEEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECC
Q 030433 58 LTEGKTSRYWLVEFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLG 106 (177)
Q Consensus 58 l~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~ 106 (177)
++. -+++.++|.=-|+.|+.-..--..+..+.++|.+.++.+..-=++
T Consensus 29 l~~-yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCN 76 (171)
T KOG1651|consen 29 LSQ-YRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCN 76 (171)
T ss_pred HHH-hCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccc
Confidence 344 556668888889999998877789999999998777777665443
No 295
>PF06480 FtsH_ext: FtsH Extracellular; InterPro: IPR011546 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in the FtsH family of proteins that include FtsH a membrane-bound ATP-dependent protease universally conserved in prokaryotes []. The FtsH peptidases, which belong to MEROPS peptidase family M41 (clan MA(E)), efficiently degrade proteins that have a low thermodynamic stability - e.g. they lack robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni (Leuconostoc oenos) FtsH is involved in protection against environmental stress [], and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded. The precise function of this N-terminal region is unclear. ; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0016021 integral to membrane; PDB: 2LNA_A.
Probab=25.36 E-value=70 Score=20.92 Aligned_cols=19 Identities=5% Similarity=0.162 Sum_probs=11.5
Q ss_pred cceeecChhHHHHHHhcCCC
Q 030433 44 GISNKLTPLQLEALLTEGKT 63 (177)
Q Consensus 44 ~~~~~l~~~~~~~~l~~~~~ 63 (177)
....+++-.+|.+.+++ ++
T Consensus 25 ~~~~~i~YS~F~~~l~~-g~ 43 (110)
T PF06480_consen 25 SQTKEISYSEFLQMLEK-GN 43 (110)
T ss_dssp -SSEE--HHHHHHTGGG-T-
T ss_pred CCCcEECHHHHHHHHHc-CC
Confidence 35577778899888877 54
No 296
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=25.24 E-value=1.9e+02 Score=19.49 Aligned_cols=36 Identities=19% Similarity=0.452 Sum_probs=20.6
Q ss_pred CChhhHHHh------HHHH-HHHHHhCCCCcEEEEEECCCCcc
Q 030433 75 CSSTCIRAS------RIFP-ELSIAYSNKNVSFGIVDLGLFPN 110 (177)
Q Consensus 75 wC~~C~~~~------p~l~-~~~~~~~~~~~~~~~vd~~~~~~ 110 (177)
-|+.|..+- ..|+ .+.++|++..+.+-.+|+.+.++
T Consensus 8 ~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~ 50 (93)
T PF07315_consen 8 ICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPE 50 (93)
T ss_dssp --GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT---
T ss_pred cchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCc
Confidence 477776543 3443 35778998889999999986554
No 297
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.96 E-value=1.9e+02 Score=22.92 Aligned_cols=35 Identities=9% Similarity=0.080 Sum_probs=27.0
Q ss_pred ecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECC
Q 030433 72 RAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLG 106 (177)
Q Consensus 72 ~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~ 106 (177)
|..-|+.|..+...++-....+...++.++.|.-.
T Consensus 87 ~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRA 121 (247)
T COG4312 87 WDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRA 121 (247)
T ss_pred ccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecC
Confidence 45579999999999977666676667888888643
No 298
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=23.27 E-value=29 Score=25.35 Aligned_cols=12 Identities=8% Similarity=0.191 Sum_probs=10.9
Q ss_pred CChhhHHHhHHH
Q 030433 75 CSSTCIRASRIF 86 (177)
Q Consensus 75 wC~~C~~~~p~l 86 (177)
-||+|++..|.+
T Consensus 11 ~CPhCRQ~ipAL 22 (163)
T TIGR02652 11 RCPHCRQNIPAL 22 (163)
T ss_pred cCchhhcccchh
Confidence 599999999987
No 299
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=23.18 E-value=28 Score=25.36 Aligned_cols=12 Identities=8% Similarity=0.210 Sum_probs=10.9
Q ss_pred CChhhHHHhHHH
Q 030433 75 CSSTCIRASRIF 86 (177)
Q Consensus 75 wC~~C~~~~p~l 86 (177)
-||+|++..|.+
T Consensus 8 ~CPhCRq~ipAL 19 (161)
T PF09654_consen 8 QCPHCRQTIPAL 19 (161)
T ss_pred cCchhhcccchh
Confidence 599999999987
No 300
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=23.10 E-value=2.3e+02 Score=18.70 Aligned_cols=18 Identities=28% Similarity=0.551 Sum_probs=11.0
Q ss_pred hhHHH-HHHHHHHHHhcHH
Q 030433 2 LFYAK-LLLVAIASIMDYH 19 (177)
Q Consensus 2 ~~~~~-~~~~~~~~~~~~~ 19 (177)
+.|.= ++++++.|++|-.
T Consensus 2 ~i~~~~~~Li~~~fi~~k~ 20 (83)
T PF05814_consen 2 FIYSLFLALIVLGFIFDKN 20 (83)
T ss_pred cHHHHHHHHHHHHHHHccc
Confidence 34433 4577777887764
No 301
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=23.04 E-value=1.3e+02 Score=20.54 Aligned_cols=73 Identities=11% Similarity=0.104 Sum_probs=35.9
Q ss_pred EEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCccHHHHhCCCc----CCCCCCCCE-EEEEeCCEEeeeec
Q 030433 70 EFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFPNAAEKFGISL----GGSMGQLPT-YILFENNAEINRFP 142 (177)
Q Consensus 70 ~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~----~~~~~~~Pt-lii~~~G~~~~r~~ 142 (177)
..|-+.+.....++..=+++..-+..++++|-.+|+..+++.-+.+.-.. +....+.|- --+|.+|+=.+.+.
T Consensus 4 ~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye 81 (99)
T PF04908_consen 4 KVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYE 81 (99)
T ss_dssp EEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHH
T ss_pred EEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHH
Confidence 33434455566666655555555555779999999998765544443111 001113333 35677777655443
No 302
>PRK11752 putative S-transferase; Provisional
Probab=22.63 E-value=2.9e+02 Score=21.87 Aligned_cols=60 Identities=10% Similarity=0.205 Sum_probs=34.5
Q ss_pred EEEecCCChhhHHHhHHHHHH-HHHhCCCCcEEEEEECCCCccHHHHh-CCCcCCCCCCCCEEEE
Q 030433 69 VEFRAQCSSTCIRASRIFPEL-SIAYSNKNVSFGIVDLGLFPNAAEKF-GISLGGSMGQLPTYIL 131 (177)
Q Consensus 69 V~F~a~wC~~C~~~~p~l~~~-~~~~~~~~~~~~~vd~~~~~~~~~~~-~v~~~~~~~~~Ptlii 131 (177)
+.+|..+|+.|++..=.++++ +...++-.+....+|..........| .++ ..+.+|+++.
T Consensus 45 ~~Ly~~~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iN---P~GkVP~Lv~ 106 (264)
T PRK11752 45 LQLYSLGTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEIN---PNSKIPALLD 106 (264)
T ss_pred eEEecCCCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhC---CCCCCCEEEe
Confidence 445556799999998888774 33332234667777765432221112 222 2348999965
No 303
>PF06298 PsbY: Photosystem II protein Y (PsbY); InterPro: IPR009388 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbY found in PSII. In higher plants, two related PsbY proteins exist, PsbY-1 and PsbY-2, which appear to function as a heterodimer. In spinach and Arabidopsis, these two proteins arise from a single-copy nuclear gene that is processed in the chloroplast. By contrast, prokaryotic and organellar chromosomes encode a single PsbY protein, as found in cyanobacteria and red algae, indicating a duplication event in the evolution of higher plants []. PsbY has two low manganese-dependent activities: a catalase-like activity and an L-arginine metabolising activity that converts L-arginine into ornithine and urea []. In addition, a redox-active group is thought to be present in the protein. In cyanobacteria, PsbY deletion mutants have a slightly impaired PSII that is less capable of coping with low levels of calcium ions than the wild-type.; GO: 0030145 manganese ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane
Probab=22.27 E-value=1.2e+02 Score=16.75 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=12.5
Q ss_pred hcHHHHHHHHHHHHHHHHH
Q 030433 16 MDYHLALWFLVVFLVIYIL 34 (177)
Q Consensus 16 ~~~~~~~l~~l~~~~~~~~ 34 (177)
||+|.+++++-++.++...
T Consensus 1 mD~R~liVl~Pil~A~gWa 19 (36)
T PF06298_consen 1 MDWRLLIVLLPILPAAGWA 19 (36)
T ss_pred CCchhHHHHHHHHHHHHHH
Confidence 6788877766666665444
No 304
>PRK10387 glutaredoxin 2; Provisional
Probab=22.24 E-value=1.7e+02 Score=21.78 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=14.5
Q ss_pred EecCCChhhHHHhHHHHHH
Q 030433 71 FRAQCSSTCIRASRIFPEL 89 (177)
Q Consensus 71 F~a~wC~~C~~~~p~l~~~ 89 (177)
++.+.||+|.+.+-.++..
T Consensus 4 y~~~~sp~~~kv~~~L~~~ 22 (210)
T PRK10387 4 YIYDHCPFCVKARMIFGLK 22 (210)
T ss_pred EeCCCCchHHHHHHHHHHc
Confidence 4677899999988776553
No 305
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=21.84 E-value=1.1e+02 Score=21.71 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=30.4
Q ss_pred HHHhCCCCcEEEEEECCCCccH----------HHHhCCCcCCCCCCCCEEEEEeCCEEeeeecCCCCCCccccc
Q 030433 90 SIAYSNKNVSFGIVDLGLFPNA----------AEKFGISLGGSMGQLPTYILFENNAEINRFPAFGFEEKFSHP 153 (177)
Q Consensus 90 ~~~~~~~~~~~~~vd~~~~~~~----------~~~~~v~~~~~~~~~Ptlii~~~G~~~~r~~g~~~~~~~~~~ 153 (177)
.+.++.+++.+.+.|+.+++.. -++.+.. .+|-++ -||+.+. ...+.+.+++.+|
T Consensus 33 ~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e------~LPitl--VdGeiv~-~G~YPt~eEl~~~ 97 (123)
T PF06953_consen 33 LDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTEGAE------ALPITL--VDGEIVK-TGRYPTNEELAEW 97 (123)
T ss_dssp HHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GG------G-SEEE--ETTEEEE-ESS---HHHHHHH
T ss_pred HHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHcCcc------cCCEEE--ECCEEEE-ecCCCCHHHHHHH
Confidence 3334446899999999987743 3456888 899654 4787644 4455555555544
No 306
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.71 E-value=2.5e+02 Score=24.31 Aligned_cols=58 Identities=14% Similarity=0.043 Sum_probs=36.2
Q ss_pred eecChhHHHHHHhcCCCCceEEEEEecCCChhhHHHh--HHHHHHHHHhCCCCcEEEEEE
Q 030433 47 NKLTPLQLEALLTEGKTSRYWLVEFRAQCSSTCIRAS--RIFPELSIAYSNKNVSFGIVD 104 (177)
Q Consensus 47 ~~l~~~~~~~~l~~~~~~~~vlV~F~a~wC~~C~~~~--p~l~~~~~~~~~~~~~~~~vd 104 (177)
..++..++-+.+.+...+---...|-+..|++|+.-. +.+.++.+..+-.+++++..|
T Consensus 52 ~~ltiG~lid~~~~g~~d~~n~~vlmt~TgGpCRfgnYi~~~rkaLk~aG~~~V~visLn 111 (420)
T COG3581 52 AILTIGQLIDAIESGEYDIENDAVLMTQTGGPCRFGNYIELLRKALKDAGFRDVPVISLN 111 (420)
T ss_pred hhhhHHHHHHHHHhCCccccccEEEEecCCCCcchhhHHHHHHHHHHHcCCCCCcEEEee
Confidence 3455555544444423322234455666999999664 666777676665779999998
No 307
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=20.96 E-value=2.1e+02 Score=17.39 Aligned_cols=55 Identities=7% Similarity=-0.043 Sum_probs=31.7
Q ss_pred EEecCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCCc----cHHHHhCCCcCCCCCCCCEEEEEeCCEE
Q 030433 70 EFRAQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLFP----NAAEKFGISLGGSMGQLPTYILFENNAE 137 (177)
Q Consensus 70 ~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~v~~~~~~~~~Ptlii~~~G~~ 137 (177)
.++.+-|+.|+...-.++... -.+....+|..+.. ...+..... .+|++. .+|..
T Consensus 3 ly~~~~s~~~~~v~~~l~~~g-----~~~~~~~v~~~~~~~~~~~~~~~~p~~------~vP~L~--~~~~~ 61 (76)
T cd03050 3 LYYDLMSQPSRAVYIFLKLNK-----IPFEECPIDLRKGEQLTPEFKKINPFG------KVPAIV--DGDFT 61 (76)
T ss_pred EeeCCCChhHHHHHHHHHHcC-----CCcEEEEecCCCCCcCCHHHHHhCcCC------CCCEEE--ECCEE
Confidence 466778899988876665532 23555666654322 222323333 899885 35543
No 308
>PF10589 NADH_4Fe-4S: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; InterPro: IPR019575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the F subunit of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. This entry represents the iron-sulphur binding domain of the F subunit.; GO: 0055114 oxidation-reduction process; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1.
Probab=20.92 E-value=47 Score=19.14 Aligned_cols=20 Identities=15% Similarity=0.252 Sum_probs=14.3
Q ss_pred CChhhHHHhHHHHHHHHHhC
Q 030433 75 CSSTCIRASRIFPELSIAYS 94 (177)
Q Consensus 75 wC~~C~~~~p~l~~~~~~~~ 94 (177)
+|.||+.=.+.+.++.++..
T Consensus 18 kC~PCR~Gt~~l~~~l~~i~ 37 (46)
T PF10589_consen 18 KCTPCREGTRQLAEILEKIV 37 (46)
T ss_dssp --HHHHCCCCHHHHHHHHHT
T ss_pred CCCCcHhHHHHHHHHHHHHH
Confidence 59999988888877776654
No 309
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=20.69 E-value=1.4e+02 Score=22.93 Aligned_cols=42 Identities=21% Similarity=0.407 Sum_probs=36.1
Q ss_pred EEEEEe--cCCChhhHHHhHHHHHHHHHhCCCCcEEEEEECCCC
Q 030433 67 WLVEFR--AQCSSTCIRASRIFPELSIAYSNKNVSFGIVDLGLF 108 (177)
Q Consensus 67 vlV~F~--a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~vd~~~~ 108 (177)
|.|.|. |+..|-|--+...+.+++-++...|++.+...++..
T Consensus 34 W~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~v 77 (224)
T KOG0854|consen 34 WGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDV 77 (224)
T ss_pred eEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhH
Confidence 888887 788899999999999998888888899988887643
No 310
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=20.10 E-value=79 Score=24.67 Aligned_cols=31 Identities=16% Similarity=0.317 Sum_probs=22.3
Q ss_pred CccHHHHhCCCcCCCCCCCCEEEEEeCCEEeeeecCCC
Q 030433 108 FPNAAEKFGISLGGSMGQLPTYILFENNAEINRFPAFG 145 (177)
Q Consensus 108 ~~~~~~~~~v~~~~~~~~~Ptlii~~~G~~~~r~~g~~ 145 (177)
+|.+.++|+|+ .+|++++...+ ...++.|..
T Consensus 151 DP~lF~~F~I~------~VPafVv~C~~-~yD~I~GNI 181 (212)
T PRK13730 151 DPTLFSQYGIR------SVPALVVFCSQ-GYDIIRGNL 181 (212)
T ss_pred CHHHHHhcCCc------cccEEEEEcCC-CCCEEEecc
Confidence 57889999999 99999998442 233444443
Done!