Query 030434
Match_columns 177
No_of_seqs 181 out of 725
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 22:14:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030434.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030434hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a17_H RPL10, 60S ribosomal pr 100.0 7.5E-92 2.6E-96 588.3 17.2 176 1-177 1-176 (215)
2 3j0l_J Ribosomal protein L10; 100.0 3.3E-90 1.1E-94 579.7 10.5 174 3-177 1-174 (219)
3 2zkr_h 60S ribosomal protein L 100.0 1.1E-87 3.7E-92 563.2 17.0 176 1-177 1-176 (214)
4 3iz5_I 60S ribosomal protein L 100.0 1.7E-91 5.9E-96 588.8 -10.0 176 1-177 1-176 (224)
5 3j21_N 50S ribosomal protein L 100.0 9.6E-87 3.3E-91 545.6 15.1 173 1-176 1-175 (181)
6 1vq8_H 50S ribosomal protein L 100.0 5.2E-84 1.8E-88 526.0 17.8 167 4-170 1-168 (171)
7 1ffk_F Ribosomal protein L10E; 100.0 2.6E-75 8.9E-80 469.7 17.5 154 4-170 1-154 (157)
8 2pa2_A 60S ribosomal protein L 100.0 3.9E-70 1.3E-74 437.1 12.9 144 33-177 2-145 (151)
9 3r8s_M 50S ribosomal protein L 100.0 1.4E-40 4.8E-45 262.2 10.7 106 48-169 29-134 (136)
10 2ftc_I Mitochondrial ribosomal 100.0 1.5E-40 5.3E-45 256.3 10.6 104 48-164 15-118 (118)
11 3bbo_O Ribosomal protein L16; 100.0 4.4E-40 1.5E-44 259.0 5.4 107 45-168 28-134 (135)
12 2zjr_J 50S ribosomal protein L 100.0 1.1E-39 3.9E-44 258.6 3.2 110 45-171 29-138 (142)
13 2kvt_A Uncharacterized protein 49.0 4.7 0.00016 28.0 0.6 38 13-56 3-44 (71)
14 4e34_A Golgi-associated PDZ an 45.8 3.4 0.00012 27.4 -0.5 30 127-156 45-77 (87)
15 3e17_A Tight junction protein 42.0 5.1 0.00018 27.1 -0.1 29 128-156 39-70 (88)
16 1cz6_A Protein (androctonin); 40.6 10 0.00035 21.3 1.0 16 3-18 11-26 (26)
17 3cbz_A Dishevelled-2; PDZ doma 40.1 16 0.00053 25.6 2.2 41 128-169 51-94 (108)
18 2yt7_A Amyloid beta A4 precurs 39.4 15 0.0005 25.2 2.0 29 127-155 54-85 (101)
19 1wi4_A Synip, syntaxin binding 37.9 18 0.00061 25.4 2.2 40 128-167 59-101 (109)
20 2dsj_A Pyrimidine-nucleoside ( 37.5 32 0.0011 30.9 4.3 28 128-155 379-406 (423)
21 2ego_A General receptor for ph 35.7 53 0.0018 21.9 4.4 27 129-155 55-84 (96)
22 2ejy_A 55 kDa erythrocyte memb 34.8 16 0.00055 25.6 1.6 28 128-155 54-84 (97)
23 2vsp_A PDZ domain-containing p 34.3 45 0.0016 22.0 3.8 36 129-168 45-83 (91)
24 1brw_A PYNP, protein (pyrimidi 34.2 32 0.0011 30.9 3.8 28 128-155 387-414 (433)
25 2pa1_A PDZ and LIM domain prot 34.0 44 0.0015 21.8 3.7 36 129-168 44-82 (87)
26 2cs5_A Tyrosine-protein phosph 33.1 33 0.0011 24.0 3.0 41 128-168 60-103 (119)
27 2iwq_A Multiple PDZ domain pro 32.2 24 0.00081 25.4 2.2 27 129-155 78-107 (123)
28 2e7k_A Maguk P55 subfamily mem 31.9 13 0.00044 25.2 0.6 28 128-155 47-76 (91)
29 3h5q_A PYNP, pyrimidine-nucleo 31.8 41 0.0014 30.3 4.1 28 128-155 390-417 (436)
30 2ogk_A Hypothetical protein; a 31.2 1.3E+02 0.0043 22.9 6.3 65 60-154 75-141 (146)
31 3lnn_A Membrane fusion protein 31.0 46 0.0016 27.4 4.0 27 127-155 77-103 (359)
32 1ghh_A DINI, DNA-damage-induci 30.8 83 0.0028 22.1 4.7 41 50-102 3-45 (81)
33 1vb7_A PDZ and LIM domain 2; P 30.4 62 0.0021 21.5 4.0 38 128-169 47-87 (94)
34 2lob_A Golgi-associated PDZ an 36.3 11 0.00037 26.9 0.0 36 121-156 64-102 (112)
35 1kwa_A Hcask/LIN-2 protein; PD 29.8 11 0.00038 25.4 0.0 36 121-156 36-74 (88)
36 2iwo_A Multiple PDZ domain pro 28.8 25 0.00085 25.1 1.8 30 128-157 71-103 (120)
37 2csj_A TJP2 protein; PDZ domai 27.8 22 0.00075 24.9 1.3 30 127-156 61-93 (117)
38 2q9v_A Membrane-associated gua 27.7 16 0.00056 24.1 0.6 29 128-156 45-76 (90)
39 2byg_A Channel associated prot 27.3 25 0.00087 24.9 1.6 28 128-155 72-102 (117)
40 3nfk_A Tyrosine-protein phosph 27.0 80 0.0027 21.3 4.1 29 128-156 62-93 (107)
41 2la8_A Inactivation-NO-after-p 26.7 14 0.00047 26.0 0.0 29 128-156 43-74 (106)
42 2db5_A INAD-like protein; PDZ 26.4 15 0.00051 26.3 0.2 28 128-155 72-103 (128)
43 1w2i_A Acylphosphatase; hydrol 26.2 1.5E+02 0.0052 20.4 5.5 40 122-165 32-71 (91)
44 1y7n_A Amyloid beta A4 precurs 26.1 34 0.0012 23.2 2.0 27 129-155 49-78 (90)
45 2fcf_A Multiple PDZ domain pro 26.0 79 0.0027 21.1 3.9 36 129-168 58-96 (103)
46 3bpu_A Membrane-associated gua 25.7 28 0.00096 22.9 1.5 33 120-154 36-71 (88)
47 3o46_A Maguk P55 subfamily mem 25.4 46 0.0016 22.1 2.5 29 128-156 46-77 (93)
48 1uou_A Thymidine phosphorylase 25.2 62 0.0021 29.5 4.1 28 128-155 422-450 (474)
49 2fne_A Multiple PDZ domain pro 24.8 17 0.00058 25.9 0.2 29 128-156 71-102 (117)
50 2o2t_A Multiple PDZ domain pro 24.8 17 0.00059 25.4 0.3 35 121-155 60-98 (117)
51 1uep_A Membrane associated gua 24.2 26 0.0009 23.9 1.1 28 128-155 52-82 (103)
52 1ihj_A INAD; intermolecular di 24.1 36 0.0012 22.8 1.8 26 129-154 56-84 (98)
53 3ne5_B Cation efflux system pr 23.8 68 0.0023 27.6 3.9 24 127-152 142-165 (413)
54 3hpk_A Protein interacting wit 23.6 17 0.00059 25.8 0.1 30 128-157 63-95 (125)
55 1wif_A RSGI RUH-020, riken cDN 23.6 26 0.00087 25.9 1.0 27 128-154 67-96 (126)
56 1um1_A KIAA1849 protein, RSGI 23.6 1.1E+02 0.0039 20.7 4.4 28 128-155 54-84 (110)
57 2dlu_A INAD-like protein; PDZ 23.4 52 0.0018 22.6 2.6 28 128-155 56-86 (111)
58 2cja_A Seryl-tRNA synthetase; 23.1 66 0.0023 29.5 3.9 48 20-75 54-104 (522)
59 2v90_A PDZ domain-containing p 23.0 96 0.0033 20.5 3.8 26 129-154 48-76 (96)
60 2he4_A Na(+)/H(+) exchange reg 22.4 94 0.0032 20.3 3.7 27 129-155 46-75 (90)
61 1d5g_A Human phosphatase HPTP1 22.4 37 0.0013 22.6 1.6 27 128-154 51-80 (96)
62 2qzb_A Uncharacterized protein 22.2 33 0.0011 27.4 1.4 31 110-140 44-74 (166)
63 3rpf_A Molybdopterin synthase 22.2 1.4E+02 0.0048 22.9 5.1 39 123-161 79-121 (148)
64 2h2b_A Tight junction protein 22.1 43 0.0015 22.8 1.9 22 120-143 49-70 (107)
65 4ap8_A Molybdopterin synthase 22.0 1.2E+02 0.004 23.1 4.5 30 126-155 88-117 (135)
66 2dc2_A GOPC, golgi associated 21.6 15 0.00051 25.4 -0.6 31 127-157 52-85 (103)
67 3cyy_A Tight junction protein 21.4 1.1E+02 0.0037 19.9 3.8 28 128-155 41-71 (92)
68 2w36_A Endonuclease V; hypoxan 21.3 45 0.0016 27.5 2.2 47 119-165 162-212 (225)
69 3gge_A PDZ domain-containing p 21.2 37 0.0013 24.3 1.5 41 128-168 46-89 (95)
70 2d92_A INAD-like protein; PDZ 21.2 51 0.0018 22.7 2.2 29 128-156 62-93 (108)
71 2wp4_A Molybdopterin-convertin 20.9 1.2E+02 0.004 23.2 4.4 43 123-165 88-135 (147)
72 1fm0_E Molybdopterin convertin 20.8 1.2E+02 0.004 23.3 4.4 40 126-165 85-129 (150)
73 2ehr_A INAD-like protein; PDZ 20.7 37 0.0013 23.6 1.4 28 128-155 68-98 (117)
74 2q5w_E Molybdopterin-convertin 20.6 1.2E+02 0.0041 23.2 4.4 39 127-165 84-127 (149)
75 3axa_A Afadin, nectin-3, prote 20.5 44 0.0015 22.7 1.7 27 128-154 56-85 (106)
76 2g5m_B Neurabin-2; spinophilin 20.3 54 0.0019 22.5 2.1 29 128-156 53-84 (113)
77 2edz_A PDZ domain-containing p 20.3 62 0.0021 22.4 2.5 27 129-155 56-85 (114)
No 1
>4a17_H RPL10, 60S ribosomal protein L10; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_H 4a1c_H 4a1e_H
Probab=100.00 E-value=7.5e-92 Score=588.35 Aligned_cols=176 Identities=70% Similarity=1.130 Sum_probs=162.6
Q ss_pred CCCCccccccccCCCCCCCCCCcCCCCCCceeEEecCCCCCCCCCCCeEEEEEeccccccChhHHHHHHHHHHHHhHHhh
Q 030434 1 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFA 80 (177)
Q Consensus 1 m~~rpa~cyr~~~~~py~r~~y~~gvP~~kI~~fd~G~~~a~~~~fp~~~~Lvs~e~~qIss~aLEAaRi~~nkyl~k~~ 80 (177)
||+|||||||+++|||||||+||+||||+||++|||||++|+|||||+|+||+|+|++||||+||||||+|+||||++++
T Consensus 1 M~~rParcYr~~~~~pY~r~~y~~GvP~~KI~~fd~G~kka~~~~fp~~~~L~a~E~~qIss~qIEAARia~nRyl~r~~ 80 (215)
T 4a17_H 1 MGRRPARCYRQPKGKPYPKSRYNRGVPDARIRIYDSGRKKATVEEFPYVVHIVSDEKEQITSEALEAARIAANKNLIKFI 80 (215)
T ss_dssp -CCCCGGGTSSCCSCCCCSCTTCCSCCCCSCCCCEEECTTCCTTTCCEEEEEEECSCEEEEHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCcHHhhccccCCCCchhhccCCCCCCcEEEEeCCCCcCCcccCCeeEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CCcceeEEEEecCCceeeecccccccccchhhcccCCCCCCcceEEEEeeCCcEEEEEeeeCCChHHHHHHHHHhcccCC
Q 030434 81 GKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 160 (177)
Q Consensus 81 Gk~~f~l~Irv~P~~vir~nkm~s~AgAdRl~~GMr~a~Gkp~g~vArV~~Gqiifev~~~~~~~~~a~eAL~rA~~KlP 160 (177)
|+++||||||+|||||||+|||||||||||||+|||+|||+|+||||+|++|||||||+++++|+++|+|||++|++|||
T Consensus 81 GK~~fhl~IRifP~~vir~nkmls~agAdRl~tgM~~akGkp~gwvArVk~Gqilfei~g~~~~~~~A~eALr~A~~KlP 160 (215)
T 4a17_H 81 SKDAFHLRCRVHPWHVLRINKMLSCAGADRLQSGMRGAFGKALGKAARVDIGSILFSVRVKEPHVKYAIDALTRAKAKFP 160 (215)
T ss_dssp CGGGCEEEECCCCCEEEEECC-----------CTTSCCCCEEEEEEEEECTTCEEEEEEECGGGHHHHHHHHHHHGGGSS
T ss_pred CCccceEEEEECCCceeeecccccccchhhhhccccCCCCCCCeEEEEEcCCCEEEEEEecCCCHHHHHHHHHHHhhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeCcccCcccC
Q 030434 161 GRQKIIVSRKWYGFHQV 177 (177)
Q Consensus 161 ~~~kiv~~~~~~g~~~~ 177 (177)
++|+|+++++| |||+|
T Consensus 161 ~~tkiv~~~kw-gft~~ 176 (215)
T 4a17_H 161 GRQKVVTSQKW-GFTKL 176 (215)
T ss_dssp SCEEEEEESBC-TTSSS
T ss_pred CceEEEEcccc-CCCcc
Confidence 99999999999 99986
No 2
>3j0l_J Ribosomal protein L10; mammalia, translation, elongation cycle, tRNA, ribosome; 9.80A {Oryctolagus cuniculus} PDB: 3j0q_J 3izc_I 3izs_I 3o58_J 3o5h_J 3u5e_I 3u5i_I 4b6a_I
Probab=100.00 E-value=3.3e-90 Score=579.74 Aligned_cols=174 Identities=74% Similarity=1.197 Sum_probs=161.2
Q ss_pred CCccccccccCCCCCCCCCCcCCCCCCceeEEecCCCCCCCCCCCeEEEEEeccccccChhHHHHHHHHHHHHhHHhhCC
Q 030434 3 RRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGK 82 (177)
Q Consensus 3 ~rpa~cyr~~~~~py~r~~y~~gvP~~kI~~fd~G~~~a~~~~fp~~~~Lvs~e~~qIss~aLEAaRi~~nkyl~k~~Gk 82 (177)
||||||||+++|||||||+||+||||+||++|||||++|+|||||+|+||+|+|++||||+||||||+|+||||++++|+
T Consensus 1 rrParcYr~~~~~pY~r~~y~~GvP~~KI~~fd~G~kka~~~efp~~~~L~a~E~~qIss~qIEAARia~nRyl~r~~GK 80 (219)
T 3j0l_J 1 RRPARCYRYQKNKPYPKSRYNRAVPDSKIRIYDLGKKKATVDEFPLCVHLVSNELEQLSSEALEAARICANKYMTTVSGR 80 (219)
T ss_dssp CCCSSSCSSCSSSCCCCSTTSTTCCCCSCCCSBCSSCSCCSSSSCCCEEEECCSCEEECHHHHHHHHHHHHHHHHHTTCT
T ss_pred CCchhhccccCCCCCchhhccCCCCCCcEEEEeCCCCcCCcccCCeeEEEEECccccccHHHHHHHHHHHHHHHHHhcCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred cceeEEEEecCCceeeecccccccccchhhcccCCCCCCcceEEEEeeCCcEEEEEeeeCCChHHHHHHHHHhcccCCCc
Q 030434 83 DAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGR 162 (177)
Q Consensus 83 ~~f~l~Irv~P~~vir~nkm~s~AgAdRl~~GMr~a~Gkp~g~vArV~~Gqiifev~~~~~~~~~a~eAL~rA~~KlP~~ 162 (177)
++||||||+|||||||+|||||||||||||+|||+|||+|+||||||++|||||||+++++|+++|+|||++|++|||++
T Consensus 81 ~~fhlwIRifP~~vir~nkmls~AgAdRl~tgMr~akGkp~gwvArVk~Gqilfei~g~~~~~~~A~eALr~A~~KLP~~ 160 (219)
T 3j0l_J 81 DAFHLRVRVHPFHVLRINKMLSCAGADRLQQGMRGAWGKPHGLAARVDIGQIIFSVRTKDSNKDVVVEGLRRARYKFPGQ 160 (219)
T ss_dssp TTCCBCCCSCCCCEEEECC-----------CCSSCCCCEEEEECEEECTTCEESCCCCCGGGHHHHHHHHHHHHHSSSCC
T ss_pred ccceEEEEECCCceeeecccccccchhhhhccccCCCCCCCeEEEEEcCCCEEEEEEecCcCHHHHHHHHHHHhhhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCcccCcccC
Q 030434 163 QKIIVSRKWYGFHQV 177 (177)
Q Consensus 163 ~kiv~~~~~~g~~~~ 177 (177)
|+|+++++| |||+|
T Consensus 161 tkiv~~~kw-gft~~ 174 (219)
T 3j0l_J 161 QKIILSKKW-GFTNL 174 (219)
T ss_dssp CCCEECCCS-SSSSC
T ss_pred eEEEEeccc-Ccccc
Confidence 999999999 99986
No 3
>2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1.1e-87 Score=563.16 Aligned_cols=176 Identities=76% Similarity=1.227 Sum_probs=164.8
Q ss_pred CCCCccccccccCCCCCCCCCCcCCCCCCceeEEecCCCCCCCCCCCeEEEEEeccccccChhHHHHHHHHHHHHhHHhh
Q 030434 1 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFA 80 (177)
Q Consensus 1 m~~rpa~cyr~~~~~py~r~~y~~gvP~~kI~~fd~G~~~a~~~~fp~~~~Lvs~e~~qIss~aLEAaRi~~nkyl~k~~ 80 (177)
|+||||||||+++|||||||+||+|||||||++|||||++|+++|||+|++|+|+|++||||+||||||+|+||||++.+
T Consensus 1 M~rrParcYr~~~~~pY~r~~y~~gvP~~kI~~fd~G~~~a~~~~fp~~~gL~a~E~~~Its~qIEAARia~nR~lkr~~ 80 (214)
T 2zkr_h 1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSC 80 (214)
T ss_dssp ---CCGGGTSSCCSCCCCCTTTCCCCCCCCCCSSCEECSSSCSTTCSEEEEEEESSCEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcccccccCCCCCChhhhcCCCCCccEEEEeCCCCcCCcccCCEEEEEEECcccccCHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCcceeEEEEecCCceeeecccccccccchhhcccCCCCCCcceEEEEeeCCcEEEEEeeeCCChHHHHHHHHHhcccCC
Q 030434 81 GKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 160 (177)
Q Consensus 81 Gk~~f~l~Irv~P~~vir~nkm~s~AgAdRl~~GMr~a~Gkp~g~vArV~~Gqiifev~~~~~~~~~a~eAL~rA~~KlP 160 (177)
|+++||||||+|||||||+|||+|||||||||+|||+|||+|+||||+|++|||||||+++..++++|+|||++|++|||
T Consensus 81 Gk~~fklwIRifP~~~it~nkmls~kgAdRlqtgMg~gkGkp~~wvArVkpGqilfEi~~~~v~~~~A~eALr~A~~KLP 160 (214)
T 2zkr_h 81 GKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVAKVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFP 160 (214)
T ss_dssp CTTCCEEEECCCCCEEEEECTTTCCSSCSSTTSSSTTCCCEEEEEEEEECTTCEEEEEEECSTTHHHHHHHHHHHHHTSS
T ss_pred CCcCcEEEEEECCCceeecccccccCCchhhcccccCCCCCCcEEEEEECCCCEEEEEeCCCCCHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred CceEEEEeCcccCcccC
Q 030434 161 GRQKIIVSRKWYGFHQV 177 (177)
Q Consensus 161 ~~~kiv~~~~~~g~~~~ 177 (177)
++|+|+++++| |||++
T Consensus 161 ~ktkiv~~~~~-gft~~ 176 (214)
T 2zkr_h 161 GRQKIHISKKW-GFTKF 176 (214)
T ss_dssp SCEEEEECC--------
T ss_pred CcEEEEEeccC-Ccccc
Confidence 99999999999 99975
No 4
>3iz5_I 60S ribosomal protein L10 (L10E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_I 1s1i_I 3jyw_I
Probab=100.00 E-value=1.7e-91 Score=588.81 Aligned_cols=176 Identities=93% Similarity=1.502 Sum_probs=142.3
Q ss_pred CCCCccccccccCCCCCCCCCCcCCCCCCceeEEecCCCCCCCCCCCeEEEEEeccccccChhHHHHHHHHHHHHhHHhh
Q 030434 1 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFA 80 (177)
Q Consensus 1 m~~rpa~cyr~~~~~py~r~~y~~gvP~~kI~~fd~G~~~a~~~~fp~~~~Lvs~e~~qIss~aLEAaRi~~nkyl~k~~ 80 (177)
||+|||||||+++|||||||+||+||||+||++|||||++|+|||||+|+||+|+|++||||+||||||+|+||||++++
T Consensus 1 M~~rParcYr~~~~~pY~r~~y~rGvP~~KI~~fd~G~kka~~~efp~~~~L~a~E~~qIss~qIEAARia~nRyl~r~~ 80 (224)
T 3iz5_I 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMTKNA 80 (224)
T ss_dssp --------------------------------CCCCCSCCCGGGTSSCCSCCCCCTTTSCSCCCCCCSSSSEECCSSCHH
T ss_pred CCCCcHhhhccccCCCCchhhccCCCCCCcEEEEeCCCCcCCcccCceEEEEEECccccccHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CCcceeEEEEecCCceeeecccccccccchhhcccCCCCCCcceEEEEeeCCcEEEEEeeeCCChHHHHHHHHHhcccCC
Q 030434 81 GKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 160 (177)
Q Consensus 81 Gk~~f~l~Irv~P~~vir~nkm~s~AgAdRl~~GMr~a~Gkp~g~vArV~~Gqiifev~~~~~~~~~a~eAL~rA~~KlP 160 (177)
|+++||||||+|||||||+|||||||||||||+|||+|||+|+||||||++|||||||+++++|+++|+|||++|++|||
T Consensus 81 GK~~fhlwIRifP~~vir~nkmls~AgAdRl~tGMr~~kGkp~gwvArVk~Gqilfei~g~~~~~~~A~eALrrA~~KLP 160 (224)
T 3iz5_I 81 GKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFP 160 (224)
T ss_dssp HHCCCEEEEEECSCCEEEHHHHHHHHHHHHHHHHHHHCSSSCSCEEEECCCCCSEECCCCCCCCSSCSSSSSSCCCSCCC
T ss_pred CCccceEEEEeCCCceeeecccccccchhhhhccccCCCCCCCeEEEEEcCCCEEEEEEecCcCHHHHHHHHHHHhhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeCcccCcccC
Q 030434 161 GRQKIIVSRKWYGFHQV 177 (177)
Q Consensus 161 ~~~kiv~~~~~~g~~~~ 177 (177)
++|+|+++++| |||+|
T Consensus 161 ~ktkiv~~~kw-gft~~ 176 (224)
T 3iz5_I 161 GRQKIIHSRKW-GFTKF 176 (224)
T ss_dssp CCEEEEECCTT-TEEEE
T ss_pred CceEEEEeccc-Ccccc
Confidence 99999999999 99985
No 5
>3j21_N 50S ribosomal protein L10E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=9.6e-87 Score=545.56 Aligned_cols=173 Identities=38% Similarity=0.598 Sum_probs=163.8
Q ss_pred CCCCccccccccCCCCCCCCCCcCCCCCCceeEEecCCCCCCCCCCCeEEEEEeccccccChhHHHHHHHHHHHHhHHhh
Q 030434 1 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFA 80 (177)
Q Consensus 1 m~~rpa~cyr~~~~~py~r~~y~~gvP~~kI~~fd~G~~~a~~~~fp~~~~Lvs~e~~qIss~aLEAaRi~~nkyl~k~~ 80 (177)
||+|||||||+++|||||||+||+||||+||++|||||+++ |||+|+||+|+|++||||+||||||+|+||||++++
T Consensus 1 M~~rParcYr~~~~~pY~r~~y~~GvP~~KI~~fd~G~k~a---~fp~~~~L~a~E~~qIss~qiEAARia~nRyl~r~~ 77 (181)
T 3j21_N 1 MALRPAKIDRYVDKPAYTRREYIRGAPGPKITIFDMGNPAG---DFEFEVSLHTAEPVQIRQNALEAARQQVNRYLQKNV 77 (181)
T ss_dssp --CCCSSSTTCSSSCCCCCTTTSSCCCCCSCCCCEEESCTT---SCCEEEEEEECSCEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHhhccCCCCCCchhhhcCCCCCCeEEEEecCcccC---CCCEEEEEEEcccccccHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999987 999999999999999999999999999999999889
Q ss_pred CCcceeEEEEecCCceeeecccccccccchhhcccCCCCCCcceEEEEeeCCcEEEEEeeeCCChHHHHHHHHHhcccCC
Q 030434 81 GKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 160 (177)
Q Consensus 81 Gk~~f~l~Irv~P~~vir~nkm~s~AgAdRl~~GMr~a~Gkp~g~vArV~~Gqiifev~~~~~~~~~a~eAL~rA~~KlP 160 (177)
|++|||||||+|||||||+|||||||||||||+|||+|||+|+||||+|++|||||||+++++|+++|+|||++|++|||
T Consensus 78 Gk~~fhl~IRifP~~vir~nkmls~agAdRl~~gM~~~kGkp~gwvArVk~Gqilfei~~~~~~~~~A~eAlr~A~~KlP 157 (181)
T 3j21_N 78 GRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKKDQKILSIRVNRQHLKFAIEGARRAAMKFP 157 (181)
T ss_dssp CTTSCEEECCCCCCCCCCCCCCCCCCTTCCSCCSSSSCSCCCCCCEEEECSSEEEEEEEECSTTHHHHHHHHHHHHHSSS
T ss_pred CCccceEEEEECCCceeeecccccccchhhhccccccccCCcceEEEEEcCCCEEEEEEecCCCHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cce--EEEEeCcccCccc
Q 030434 161 GRQ--KIIVSRKWYGFHQ 176 (177)
Q Consensus 161 ~~~--kiv~~~~~~g~~~ 176 (177)
++| +|+++++.+--|+
T Consensus 158 ~~t~~kiv~~~~~~~~~~ 175 (181)
T 3j21_N 158 CKCYYRIYDKEGNDVTTK 175 (181)
T ss_dssp SCCSSCEEECCCC-----
T ss_pred CCeeeEEEEeccHHHHHH
Confidence 999 9999987643443
No 6
>1vq8_H 50S ribosomal protein L10E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1vq4_H* 1vq5_H* 1vq6_H* 1vq7_H* 1s72_H* 1vq9_H* 1vqk_H* 1vql_H* 1vqm_H* 1vqn_H* 1vqo_H* 1vqp_H* 2otj_H* 2otl_H* 2qa4_H* 2qex_H* 1yhq_H* 1yi2_H* 1yij_H* 1yit_H* ...
Probab=100.00 E-value=5.2e-84 Score=526.00 Aligned_cols=167 Identities=36% Similarity=0.590 Sum_probs=153.4
Q ss_pred CccccccccCCCCCCCCCCcCCCCCCceeEEecCCCCCCCCCCCeEEEEEeccccccChhHHHHHHHHHHHHhHHhhCC-
Q 030434 4 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGK- 82 (177)
Q Consensus 4 rpa~cyr~~~~~py~r~~y~~gvP~~kI~~fd~G~~~a~~~~fp~~~~Lvs~e~~qIss~aLEAaRi~~nkyl~k~~Gk- 82 (177)
|||||||+++|||||||+||+||||+||++|||||++|+++|||+|++|+|+|++||||+||||||+|+||||++..|+
T Consensus 1 rparcYr~~~~~~Y~r~~y~~gvP~~kI~~fd~G~~~~~~~~fp~~~~L~a~E~~~Its~qIEAaRia~~R~lkk~~Gk~ 80 (171)
T 1vq8_H 1 KPASMYRDIDKPAYTRREYITGIPGSKIAQHKMGRKQKDADDYPVQISLIVEETVQLRHGSLEASRLSANRHLIKELGEE 80 (171)
T ss_dssp CCGGGTSSCCSCCCCCTTTCCCCCCCCCCCSBCSCTTSCSTTCSEEEEEEESSCEEEEHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CCcccccccCCCCCchhhhcCCCCCCcEEEEecCCCcCCcccCCEEEEEEECcccccCHHHHHHHHHHHHHHhHHhcCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred cceeEEEEecCCceeeecccccccccchhhcccCCCCCCcceEEEEeeCCcEEEEEeeeCCChHHHHHHHHHhcccCCCc
Q 030434 83 DAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGR 162 (177)
Q Consensus 83 ~~f~l~Irv~P~~vir~nkm~s~AgAdRl~~GMr~a~Gkp~g~vArV~~Gqiifev~~~~~~~~~a~eAL~rA~~KlP~~ 162 (177)
++||||||+|||||||+|||+|||||||||+|||+|||+|+||||+|++|||||||+++.+++++|+|||++|++|||++
T Consensus 81 ~~f~iwIRifP~~~ir~nkm~T~kgAdRlq~rMg~gkG~p~~wvArVk~G~ilfei~~~~v~~~~A~eAlr~A~~KLP~k 160 (171)
T 1vq8_H 81 GDYKMTLRKFPHQVLRENKQATGAGADRVSDGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPS 160 (171)
T ss_dssp CSCEEEECCCCCEEEEECC-----------CCSTTCCCEEEEEEEEECTTCEEEEEEECTTTHHHHHHHHHHHGGGSSSC
T ss_pred CCcEEEEEEcCCeeEeccccccccchhhhhccccccCCCCcEEEEEECCCCEEEEEECcCCCHHHHHHHHHHHHhhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred eEEEEeCc
Q 030434 163 QKIIVSRK 170 (177)
Q Consensus 163 ~kiv~~~~ 170 (177)
|+|+++++
T Consensus 161 tkiv~~~~ 168 (171)
T 1vq8_H 161 CRIDSSPA 168 (171)
T ss_dssp EEEEECSC
T ss_pred EEEEEecC
Confidence 99998865
No 7
>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J* 1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J* 1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H* 1giy_P ...
Probab=100.00 E-value=2.6e-75 Score=469.66 Aligned_cols=154 Identities=28% Similarity=0.430 Sum_probs=149.7
Q ss_pred CccccccccCCCCCCCCCCcCCCCCCceeEEecCCCCCCCCCCCeEEEEEeccccccChhHHHHHHHHHHHHhHHhhCCc
Q 030434 4 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKD 83 (177)
Q Consensus 4 rpa~cyr~~~~~py~r~~y~~gvP~~kI~~fd~G~~~a~~~~fp~~~~Lvs~e~~qIss~aLEAaRi~~nkyl~k~~Gk~ 83 (177)
|||||||+++|||||||+||+||||+||++|||||++|+ +|||+|++|+|+|++||||+||||||+|+||||++.+|++
T Consensus 1 rparcyr~~~~~pY~r~~y~~gvP~~kI~~fd~G~~~a~-~~fp~~~~L~a~E~~~Its~qIEAaRia~nR~lkr~~Gk~ 79 (157)
T 1ffk_F 1 KPGAHFRNSIKPAYTRREYISGIPGKGIAQFKMGNNGAG-PTYPAQVENVVEKPVQIRHNALEAARNAANRFVQNSGAAA 79 (157)
T ss_pred CCccccccCCCCCCchhhhcCCCCCCceEEEeCCCCCcc-ccCCEEEEEEECccccCCHHHHHHHHHHHHHHHHhhcCCc
Confidence 799999999999999999999999999999999999998 9999999999999999999999999999999999878999
Q ss_pred ceeEEEEecCCceeeecccccccccchhhcccCCCCCCcceEEEEeeCCcEEEEEeeeCCChHHHHHHHHHhcccCCCce
Q 030434 84 AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQ 163 (177)
Q Consensus 84 ~f~l~Irv~P~~vir~nkm~s~AgAdRl~~GMr~a~Gkp~g~vArV~~Gqiifev~~~~~~~~~a~eAL~rA~~KlP~~~ 163 (177)
+||||||+|||||||+|| |+|||+|||+|+||||+|++|||||||+++++ ++|+|||++|++|||++|
T Consensus 80 ~fklwIRifP~~~it~kp----------etrMg~gkG~p~~wvArVk~G~ilfei~gv~~--~~A~eAlr~A~~KlP~kt 147 (157)
T 1ffk_F 80 NYKFRIRKFPFHVIREQD----------GDGMRAPFGKSVGTAARSHGANHDFIAWVNPD--PAVEFAWRRAYMKVTPTV 147 (157)
T ss_pred ccEEEEEECCCeeeEecc----------cccccCCCCCccEEEEEEcCCCEEEEEeccCH--HHHHHHHHHHHhhCCCcE
Confidence 999999999999999998 89999999999999999999999999999855 699999999999999999
Q ss_pred EEEEeCc
Q 030434 164 KIIVSRK 170 (177)
Q Consensus 164 kiv~~~~ 170 (177)
+|+++++
T Consensus 148 kiv~~~~ 154 (157)
T 1ffk_F 148 NIDSSPA 154 (157)
T ss_pred EEEEecC
Confidence 9998865
No 8
>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Homo sapiens} SCOP: d.41.4.1
Probab=100.00 E-value=3.9e-70 Score=437.14 Aligned_cols=144 Identities=72% Similarity=1.127 Sum_probs=106.2
Q ss_pred EEecCCCCCCCCCCCeEEEEEeccccccChhHHHHHHHHHHHHhHHhhCCcceeEEEEecCCceeeecccccccccchhh
Q 030434 33 IYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQ 112 (177)
Q Consensus 33 ~fd~G~~~a~~~~fp~~~~Lvs~e~~qIss~aLEAaRi~~nkyl~k~~Gk~~f~l~Irv~P~~vir~nkm~s~AgAdRl~ 112 (177)
+|||||++|+++|||+|++|+|+|++||||+||||||+|+||||++.+|+++||||||+|||||||+|||+|||||||||
T Consensus 2 ~fd~G~~~~~~~~fp~~~~L~a~E~~~Its~qIEAaRia~~R~lkr~~Gk~~~~iwIRifP~~~ir~nkmlT~kgadRlq 81 (151)
T 2pa2_A 2 SFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQ 81 (151)
T ss_dssp -------CCCTTTCCEEEEEEECSCEEEEHHHHHHHHHHHHHHHHHHHCTTSEEEEECCSCC------------------
T ss_pred ccccCCCcCCcccCCEEEEEEECccccCCHHHHHHHHHHHHHHHhhhcCCcCcEEEEEECCCeeEeecccccccchhhhh
Confidence 79999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred cccCCCCCCcceEEEEeeCCcEEEEEeeeCCChHHHHHHHHHhcccCCCceEEEEeCcccCcccC
Q 030434 113 TGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWYGFHQV 177 (177)
Q Consensus 113 ~GMr~a~Gkp~g~vArV~~Gqiifev~~~~~~~~~a~eAL~rA~~KlP~~~kiv~~~~~~g~~~~ 177 (177)
+|||+|||+|+||||+|++|||||||++++.++++|+|||++|++|||++|+|+++++| |||+|
T Consensus 82 ~gMg~gkG~p~~wvArVk~G~ilfei~~~~v~~~~A~eAlr~A~~KlP~ktkiv~~~~~-gft~~ 145 (151)
T 2pa2_A 82 TGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKW-GFTKF 145 (151)
T ss_dssp -----------CCEEEECTTBEEEEEEECGGGHHHHHHHHHHHGGGSSSCEEEEEESCC-CCCBC
T ss_pred cccccCCCCccEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEEeccC-CCCCC
Confidence 99999999999999999999999999998889999999999999999999999999999 99986
No 9
>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ...
Probab=100.00 E-value=1.4e-40 Score=262.19 Aligned_cols=106 Identities=22% Similarity=0.251 Sum_probs=100.0
Q ss_pred eEEEEEeccccccChhHHHHHHHHHHHHhHHhhCCcceeEEEEecCCceeeecccccccccchhhcccCCCCCCcceEEE
Q 030434 48 FCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCA 127 (177)
Q Consensus 48 ~~~~Lvs~e~~qIss~aLEAaRi~~nkyl~k~~Gk~~f~l~Irv~P~~vir~nkm~s~AgAdRl~~GMr~a~Gkp~g~vA 127 (177)
-+.+|+++|++||||+||||||+++||||++ .| ++|||+|||||||+|| +++|||+|||+|++|||
T Consensus 29 G~~gL~a~e~~~it~~qiEaaR~ai~R~lkr-~g----k~wirv~P~~pvt~k~---------~etRMGkGKG~~~~wva 94 (136)
T 3r8s_M 29 GSFGLKAVGRGRLTARQIEAARRAMTRAVKR-QG----KIWIRVFPDKPITEKP---------LAVRMGKGKGNVEYWVA 94 (136)
T ss_dssp SSEEEEECSCEEEEHHHHHHHHHHHHHTTCS-CS----EEEECCCCCEEEEECC---------SSCCSCSSCCEEEEEEE
T ss_pred ceEEEEECcCCeECHHHHHHHHHHHHHhhhc-Cc----EEEEEECCCCceEeCc---------hhccCCCCCCCCCEEEE
Confidence 5679999999999999999999999999975 44 8999999999999999 58999999999999999
Q ss_pred EeeCCcEEEEEeeeCCChHHHHHHHHHhcccCCCceEEEEeC
Q 030434 128 RVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR 169 (177)
Q Consensus 128 rV~~Gqiifev~~~~~~~~~a~eAL~rA~~KlP~~~kiv~~~ 169 (177)
+|++|||||||.++ +++.|+|||++|++|||++|+|++.+
T Consensus 95 ~Vk~G~ilfEi~g~--~~~~A~eAlr~a~~KLP~~~kiv~~~ 134 (136)
T 3r8s_M 95 LIQPGKVLYEMDGV--PEELAREAFKLAAAKLPIKTTFVTKT 134 (136)
T ss_dssp EECTTCEEEEEESS--CHHHHHHHHHHHHTTCSSCEEEEECC
T ss_pred EECCCCEEEEEeCC--CHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 99999999999996 88999999999999999999999764
No 10
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=100.00 E-value=1.5e-40 Score=256.26 Aligned_cols=104 Identities=17% Similarity=0.207 Sum_probs=96.5
Q ss_pred eEEEEEeccccccChhHHHHHHHHHHHHhHHhhCCcceeEEEEecCCceeeecccccccccchhhcccCCCCCCcceEEE
Q 030434 48 FCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCA 127 (177)
Q Consensus 48 ~~~~Lvs~e~~qIss~aLEAaRi~~nkyl~k~~Gk~~f~l~Irv~P~~vir~nkm~s~AgAdRl~~GMr~a~Gkp~g~vA 127 (177)
-+.+|+++|++||||+||||||+++||||.+ +.+||+|||+|||||||+++ ++++||+|||+|++|||
T Consensus 15 G~~gL~a~e~~~it~~qiEaaR~ai~r~l~~---k~~~~~wirv~P~~pvt~k~---------~e~RMG~GKG~~~~wva 82 (118)
T 2ftc_I 15 GNFAILALGGGYLHWGHFEMMRLTINRSMDP---KNMFAIWRVPAPFKPITRKS---------VGHRMGGGKGAIDHYVT 82 (118)
T ss_pred eeEEEEECcCCccCHHHHHHHHHHHHheeec---cCCeEEEEEECCCcccCcCc---------hhcccccCCCCccEEEE
Confidence 5679999999999999999999999999943 23689999999999999998 57999999999999999
Q ss_pred EeeCCcEEEEEeeeCCChHHHHHHHHHhcccCCCceE
Q 030434 128 RVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQK 164 (177)
Q Consensus 128 rV~~Gqiifev~~~~~~~~~a~eAL~rA~~KlP~~~k 164 (177)
+|++|||||||.++ .++++|+|||++|++|||++|+
T Consensus 83 ~Vk~G~ilfEi~g~-~~~~~a~eAlr~a~~KlP~~~~ 118 (118)
T 2ftc_I 83 PVKAGRLVVEMGGR-CEFEEVQGFLDQVAHKLPFAAK 118 (118)
T ss_pred EECCCCEEEEEecc-CCHHHHHHHHHHHHhhCCCCCC
Confidence 99999999999994 7899999999999999999985
No 11
>3bbo_O Ribosomal protein L16; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Probab=100.00 E-value=4.4e-40 Score=258.98 Aligned_cols=107 Identities=25% Similarity=0.268 Sum_probs=99.6
Q ss_pred CCCeEEEEEeccccccChhHHHHHHHHHHHHhHHhhCCcceeEEEEecCCceeeecccccccccchhhcccCCCCCCcce
Q 030434 45 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQG 124 (177)
Q Consensus 45 ~fp~~~~Lvs~e~~qIss~aLEAaRi~~nkyl~k~~Gk~~f~l~Irv~P~~vir~nkm~s~AgAdRl~~GMr~a~Gkp~g 124 (177)
.| -+++|+++|++||||+||||||+++||||++ +|++|||+|||||||+++ ++++||+|||+|++
T Consensus 28 ~f-G~~gL~a~e~~~it~~qiEaaR~ai~R~lk~-----~~k~wirv~P~~pvt~k~---------~e~RMG~GKG~~~~ 92 (135)
T 3bbo_O 28 CF-GRYALQALEPAWITSRQIEAGRRAMTRNARR-----GGKIWVRIFPDKPVTVRP---------AETRMGSGKGSPEY 92 (135)
T ss_dssp CS-SSEEEEESSCCCCCHHHHHHHHHHHHHTTCS-----SSCCCCCCCCCSCCCCCC---------SSCCSSCCCSCSSC
T ss_pred ee-ceEEEEECcCCccCHHHHHHHHHHHHHHhhh-----CcEEEEEeCCCcccEecc---------ccccccccCCCceE
Confidence 35 5679999999999999999999999999953 679999999999999987 68999999999999
Q ss_pred EEEEeeCCcEEEEEeeeCCChHHHHHHHHHhcccCCCceEEEEe
Q 030434 125 TCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVS 168 (177)
Q Consensus 125 ~vArV~~Gqiifev~~~~~~~~~a~eAL~rA~~KlP~~~kiv~~ 168 (177)
|||+|++|||||||.++ ++++|+|||++|++|||++|+|+++
T Consensus 93 wva~Vk~G~ilfEi~gv--~~~~A~eAlr~a~~KLP~~~kiv~~ 134 (135)
T 3bbo_O 93 WVAVVKPGRILYEISGV--AENIARRAVAIAASKMPIRTQFIIS 134 (135)
T ss_dssp CCCCCCTTCEEEEECSS--CTTHHHHHHHHHHHHCSSCEEEECC
T ss_pred EEEEECCCCEEEEEecC--CHHHHHHHHHHHHhhCCCcEEEEec
Confidence 99999999999999984 7799999999999999999999863
No 12
>2zjr_J 50S ribosomal protein L16; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.41.4.2 PDB: 1sm1_K* 2zjp_J* 2zjq_J 1nkw_K 3cf5_J* 3dll_J* 3pio_J* 1njm_K* 1nwx_K* 1njp_K* 1xbp_K* 1y69_K 1nwy_K* 3pip_J* 1pnu_K 1pny_K 1vor_N 1vou_N 1vow_N 1voy_N ...
Probab=100.00 E-value=1.1e-39 Score=258.58 Aligned_cols=110 Identities=23% Similarity=0.273 Sum_probs=101.4
Q ss_pred CCCeEEEEEeccccccChhHHHHHHHHHHHHhHHhhCCcceeEEEEecCCceeeecccccccccchhhcccCCCCCCcce
Q 030434 45 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQG 124 (177)
Q Consensus 45 ~fp~~~~Lvs~e~~qIss~aLEAaRi~~nkyl~k~~Gk~~f~l~Irv~P~~vir~nkm~s~AgAdRl~~GMr~a~Gkp~g 124 (177)
.| -+++|+|+|++||||+||||||+++||||++ +|++|||+|||||||+|| ++++|++|+|+|++
T Consensus 29 ~f-G~~gL~a~e~~~it~~qiEAaR~ai~R~lkr-----~gk~wirv~P~~pvt~Kp---------~e~RMG~GKG~~~~ 93 (142)
T 2zjr_J 29 AF-GDYGLIAMEPAWIKSNQIEACRIVMSRHFRR-----GGKIYIRIFPDKPVTKKP---------AETRMGKGKGAVEY 93 (142)
T ss_dssp SS-SSCEEEECSCBCCBHHHHHHHHHHHHHHCSS-----CCCCCCCCCCCCEECCCS---------SSCCCSSSCCTTSE
T ss_pred ec-ceEEEEECcCCeECHHHHHHHHHHHHHHhhh-----CcEEEEEeCCCcceEcCc---------ccccccccCCCCCE
Confidence 35 4679999999999999999999999999976 569999999999999998 47899999999999
Q ss_pred EEEEeeCCcEEEEEeeeCCChHHHHHHHHHhcccCCCceEEEEeCcc
Q 030434 125 TCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKW 171 (177)
Q Consensus 125 ~vArV~~Gqiifev~~~~~~~~~a~eAL~rA~~KlP~~~kiv~~~~~ 171 (177)
|||+|++|||||||.++ ++++|+|||++|++|||++|+|++++..
T Consensus 94 wva~Vk~G~ilfEi~gv--~~~~A~eAlr~A~~KLP~~~kiv~~~~~ 138 (142)
T 2zjr_J 94 WVSVVKPGRVMFEVAGV--TEEQAKEAFRLAGHKLPIQTKMVKREVY 138 (142)
T ss_dssp EBCCBCTTEEEECCCSS--CSTTTTTHHHHHHHTCSSCEEEECSCCC
T ss_pred EEEEECCCCEEEEEeCC--CHHHHHHHHHHHHhhCCCcEEEEEeccc
Confidence 99999999999999984 7799999999999999999999987643
No 13
>2kvt_A Uncharacterized protein YAIA; structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium, NESG; NMR {Escherichia coli}
Probab=49.05 E-value=4.7 Score=27.99 Aligned_cols=38 Identities=24% Similarity=0.537 Sum_probs=29.2
Q ss_pred CCCCCCCCCCc----CCCCCCceeEEecCCCCCCCCCCCeEEEEEecc
Q 030434 13 KNKPYPKSRFC----RGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWE 56 (177)
Q Consensus 13 ~~~py~r~~y~----~gvP~~kI~~fd~G~~~a~~~~fp~~~~Lvs~e 56 (177)
.+|||||.-+| +|.|+..|+-|.+- | |+|--=+|+|+-
T Consensus 3 ~rPpYPReA~iV~veKG~~g~~vtwyeLR---A---Dhp~PnsLISEH 44 (71)
T 2kvt_A 3 TKPPYPREAYIVTIEKGKPGQTVTWYQLR---A---DHPKPDSLISEH 44 (71)
T ss_dssp CCCSSCCCEEEEEEEEECSSSEEEEEEEE---E---SSSCTTEEEEEE
T ss_pred CCCCCCcceEEEEeecCCCCceEEEEEee---c---CCCCCCcccccC
Confidence 46899998887 79999999999885 3 555555667654
No 14
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=45.82 E-value=3.4 Score=27.44 Aligned_cols=30 Identities=17% Similarity=0.289 Sum_probs=22.5
Q ss_pred EEeeCCcEEEEEeeeCC---ChHHHHHHHHHhc
Q 030434 127 ARVAIGQVLLSVRCKDS---NSLHAQEALRRAK 156 (177)
Q Consensus 127 ArV~~Gqiifev~~~~~---~~~~a~eAL~rA~ 156 (177)
|.+++|++|.+|.+.+. +.+.+.+.++.+.
T Consensus 45 agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~ 77 (87)
T 4e34_A 45 GGLHVGDAILAVNGVNLRDTKHKEAVTILSQQR 77 (87)
T ss_dssp SCCCTTEEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 46799999999988754 4467777787554
No 15
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=41.99 E-value=5.1 Score=27.11 Aligned_cols=29 Identities=10% Similarity=0.320 Sum_probs=22.9
Q ss_pred EeeCCcEEEEEeeeCC---ChHHHHHHHHHhc
Q 030434 128 RVAIGQVLLSVRCKDS---NSLHAQEALRRAK 156 (177)
Q Consensus 128 rV~~Gqiifev~~~~~---~~~~a~eAL~rA~ 156 (177)
++++|++|.+|.+.+. +.+.+.+.|+.+.
T Consensus 39 ~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~ 70 (88)
T 3e17_A 39 NLHEGDIILKINGTVTENMSLTDARKLIEKSR 70 (88)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHHTT
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 5789999999987754 5677888888654
No 16
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=40.60 E-value=10 Score=21.34 Aligned_cols=16 Identities=44% Similarity=1.020 Sum_probs=13.4
Q ss_pred CCccccccccCCCCCC
Q 030434 3 RRPARCYRQIKNKPYP 18 (177)
Q Consensus 3 ~rpa~cyr~~~~~py~ 18 (177)
||-+-||-.|.|.||.
T Consensus 11 rrrggcyykctnrpy~ 26 (26)
T 1cz6_A 11 RRRGGCYYKCTNRPYX 26 (26)
T ss_dssp CSSSCCEEEECCCCC-
T ss_pred HhcCceEEEccCCCCC
Confidence 6778899999999994
No 17
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=40.13 E-value=16 Score=25.56 Aligned_cols=41 Identities=32% Similarity=0.421 Sum_probs=27.8
Q ss_pred EeeCCcEEEEEeeeCC-C--hHHHHHHHHHhcccCCCceEEEEeC
Q 030434 128 RVAIGQVLLSVRCKDS-N--SLHAQEALRRAKFKFPGRQKIIVSR 169 (177)
Q Consensus 128 rV~~Gqiifev~~~~~-~--~~~a~eAL~rA~~KlP~~~kiv~~~ 169 (177)
++++|++|.+|.+.+. + .+.+.+.|+.+..+ +....+.+.+
T Consensus 51 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~-~~~v~l~v~R 94 (108)
T 3cbz_A 51 RIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHK-PGPIVLTVAK 94 (108)
T ss_dssp CCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTS-SSCEEEEEEC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhcccC-CCeEEEEEEe
Confidence 5889999999988753 2 57788888877322 2335555543
No 18
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=39.38 E-value=15 Score=25.24 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=23.2
Q ss_pred EEeeCCcEEEEEeeeCC---ChHHHHHHHHHh
Q 030434 127 ARVAIGQVLLSVRCKDS---NSLHAQEALRRA 155 (177)
Q Consensus 127 ArV~~Gqiifev~~~~~---~~~~a~eAL~rA 155 (177)
+.+++|++|.+|.+.+. +.+.+.+.|+..
T Consensus 54 ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~ 85 (101)
T 2yt7_A 54 GALSIGDRLTAINGTSLVGLPLAACQAAVRET 85 (101)
T ss_dssp SSCCTTCEEEEESSCBCTTSCHHHHHHHHHHT
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 45789999999998865 667788888764
No 19
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=37.89 E-value=18 Score=25.43 Aligned_cols=40 Identities=23% Similarity=0.246 Sum_probs=27.8
Q ss_pred EeeCCcEEEEEeeeCCC---hHHHHHHHHHhcccCCCceEEEE
Q 030434 128 RVAIGQVLLSVRCKDSN---SLHAQEALRRAKFKFPGRQKIIV 167 (177)
Q Consensus 128 rV~~Gqiifev~~~~~~---~~~a~eAL~rA~~KlP~~~kiv~ 167 (177)
++++|+.|++|.+.+.. .+.+.+.|+.+..+--....|.+
T Consensus 59 ~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~r~~~~~~l~v 101 (109)
T 1wi4_A 59 RLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAF 101 (109)
T ss_dssp SCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHccccCCCceEEEEE
Confidence 58999999999987542 57888888887633333444443
No 20
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=37.53 E-value=32 Score=30.89 Aligned_cols=28 Identities=32% Similarity=0.286 Sum_probs=25.2
Q ss_pred EeeCCcEEEEEeeeCCChHHHHHHHHHh
Q 030434 128 RVAIGQVLLSVRCKDSNSLHAQEALRRA 155 (177)
Q Consensus 128 rV~~Gqiifev~~~~~~~~~a~eAL~rA 155 (177)
+|+.||+|++|....+..+.|.+.|+.|
T Consensus 379 ~v~~g~~l~~i~~~~~~~~~a~~~~~~~ 406 (423)
T 2dsj_A 379 RVERGEALALVYHRRRGLEEALGHLREA 406 (423)
T ss_dssp EECTTSEEEEEEECSSSHHHHHHHHHHH
T ss_pred EeCCCCeEEEEEeCCccHHHHHHHHHhC
Confidence 7899999999999877888999988877
No 21
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=35.68 E-value=53 Score=21.93 Aligned_cols=27 Identities=11% Similarity=0.212 Sum_probs=21.0
Q ss_pred eeCCcEEEEEeeeCCCh---HHHHHHHHHh
Q 030434 129 VAIGQVLLSVRCKDSNS---LHAQEALRRA 155 (177)
Q Consensus 129 V~~Gqiifev~~~~~~~---~~a~eAL~rA 155 (177)
+++|++|.+|.+.+..- +.+.++|+..
T Consensus 55 L~~GD~I~~ing~~v~~~~~~~~~~~l~~~ 84 (96)
T 2ego_A 55 LTPGDTIASVNGLNVEGIRHREIVDIIKAS 84 (96)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHHT
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 68899999999876433 7777777765
No 22
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=34.83 E-value=16 Score=25.58 Aligned_cols=28 Identities=14% Similarity=0.329 Sum_probs=22.7
Q ss_pred EeeCCcEEEEEeeeCCC---hHHHHHHHHHh
Q 030434 128 RVAIGQVLLSVRCKDSN---SLHAQEALRRA 155 (177)
Q Consensus 128 rV~~Gqiifev~~~~~~---~~~a~eAL~rA 155 (177)
++++|++|.+|.+.+.. .+.+.+.|+.+
T Consensus 54 ~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~ 84 (97)
T 2ejy_A 54 SLHVGDEILEINGTNVTNHSVDQLQKAMKET 84 (97)
T ss_dssp CCCTTCEEEEETTBCCCSSCSHHHHHHHHHC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 47899999999988754 67888888864
No 23
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=34.31 E-value=45 Score=22.01 Aligned_cols=36 Identities=8% Similarity=0.138 Sum_probs=24.9
Q ss_pred eeCCcEEEEEeeeCC---ChHHHHHHHHHhcccCCCceEEEEe
Q 030434 129 VAIGQVLLSVRCKDS---NSLHAQEALRRAKFKFPGRQKIIVS 168 (177)
Q Consensus 129 V~~Gqiifev~~~~~---~~~~a~eAL~rA~~KlP~~~kiv~~ 168 (177)
+++|++|.+|.+.+. +.+.+.++|+.+ .....+.+.
T Consensus 45 l~~GD~I~~ing~~v~~~~~~~~~~~l~~~----g~~v~l~v~ 83 (91)
T 2vsp_A 45 LEDEDVIIEVNGVNVLDEPYEKVVDRIQSS----GKNVTLLVC 83 (91)
T ss_dssp CCTTCEEEEETTEECTTSCHHHHHHHHTTS----CSEEEEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcC----CCEEEEEEE
Confidence 689999999998865 466777777654 334455443
No 24
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=34.24 E-value=32 Score=30.89 Aligned_cols=28 Identities=25% Similarity=0.461 Sum_probs=25.2
Q ss_pred EeeCCcEEEEEeeeCCChHHHHHHHHHh
Q 030434 128 RVAIGQVLLSVRCKDSNSLHAQEALRRA 155 (177)
Q Consensus 128 rV~~Gqiifev~~~~~~~~~a~eAL~rA 155 (177)
+|+.||+|++|....+..+.|.+.|+.|
T Consensus 387 ~v~~g~~l~~i~~~~~~~~~a~~~~~~~ 414 (433)
T 1brw_A 387 RVQKGEALATIHSNRPDVLDVKEKIEAA 414 (433)
T ss_dssp EECTTCEEEEEEESSSCCHHHHHHHHTT
T ss_pred EECCCCeEEEEEcCCccHHHHHHHHHhc
Confidence 7899999999999877889999988877
No 25
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=34.00 E-value=44 Score=21.82 Aligned_cols=36 Identities=11% Similarity=0.346 Sum_probs=24.7
Q ss_pred eeCCcEEEEEeeeCCC---hHHHHHHHHHhcccCCCceEEEEe
Q 030434 129 VAIGQVLLSVRCKDSN---SLHAQEALRRAKFKFPGRQKIIVS 168 (177)
Q Consensus 129 V~~Gqiifev~~~~~~---~~~a~eAL~rA~~KlP~~~kiv~~ 168 (177)
+++|++|.+|.+.+.. .+.+.++|+.+. ....+.+.
T Consensus 44 L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~----~~v~l~v~ 82 (87)
T 2pa1_A 44 LRPGDIIVAINGESAEGMLHAEAQSKIRQSP----SPLRLQLD 82 (87)
T ss_dssp CCTTCEEEEETTEESTTCCHHHHHHHHHTCC----SSEEEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcCC----CeEEEEEE
Confidence 6899999999987643 367777776653 34455443
No 26
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=33.11 E-value=33 Score=24.00 Aligned_cols=41 Identities=12% Similarity=0.191 Sum_probs=27.2
Q ss_pred EeeCCcEEEEEeeeCCC---hHHHHHHHHHhcccCCCceEEEEe
Q 030434 128 RVAIGQVLLSVRCKDSN---SLHAQEALRRAKFKFPGRQKIIVS 168 (177)
Q Consensus 128 rV~~Gqiifev~~~~~~---~~~a~eAL~rA~~KlP~~~kiv~~ 168 (177)
.+++|++|.+|.+.+.. .+.+.+.++.+.........+.+.
T Consensus 60 GL~~GD~Il~ing~~v~~~~~~~~~~~~~~~~~~~~~~v~l~v~ 103 (119)
T 2cs5_A 60 RLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVR 103 (119)
T ss_dssp CCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCCEEEEEEE
Confidence 47899999999987542 466777787775432234455444
No 27
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=32.17 E-value=24 Score=25.42 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=21.4
Q ss_pred eeCCcEEEEEeeeCCC---hHHHHHHHHHh
Q 030434 129 VAIGQVLLSVRCKDSN---SLHAQEALRRA 155 (177)
Q Consensus 129 V~~Gqiifev~~~~~~---~~~a~eAL~rA 155 (177)
+++|++|.+|.+.+.. .+.+.++|+.+
T Consensus 78 L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~ 107 (123)
T 2iwq_A 78 LKPGDRIVEVDGMDLRDASHEQAVEAIRKA 107 (123)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHHC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 7899999999987643 47778888765
No 28
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.92 E-value=13 Score=25.18 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=22.1
Q ss_pred EeeCCcEEEEEeeeCC--ChHHHHHHHHHh
Q 030434 128 RVAIGQVLLSVRCKDS--NSLHAQEALRRA 155 (177)
Q Consensus 128 rV~~Gqiifev~~~~~--~~~~a~eAL~rA 155 (177)
.+++|++|.+|.+.+. +.+.+.+.|+.+
T Consensus 47 ~L~~GD~I~~ing~~v~~~~~~~~~~l~~~ 76 (91)
T 2e7k_A 47 LLHVGDIIKEVNGQPVGSDPRALQELLRNA 76 (91)
T ss_dssp CCCTTCEEEEETTEECTTCHHHHHHHHHTC
T ss_pred CCCCCCEEEEECCEECCCCHHHHHHHHHcC
Confidence 4689999999988765 667778888764
No 29
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=31.79 E-value=41 Score=30.31 Aligned_cols=28 Identities=18% Similarity=0.315 Sum_probs=23.4
Q ss_pred EeeCCcEEEEEeeeCCChHHHHHHHHHh
Q 030434 128 RVAIGQVLLSVRCKDSNSLHAQEALRRA 155 (177)
Q Consensus 128 rV~~Gqiifev~~~~~~~~~a~eAL~rA 155 (177)
+|+.||+|++|...+...+.|.+.|+.|
T Consensus 390 ~V~~g~~l~~i~~~~~~~~~a~~~~~~a 417 (436)
T 3h5q_A 390 KVEEGESLLTIHSNRQDVDDVVKKLDSS 417 (436)
T ss_dssp EECTTSEEEEEEESSSCCHHHHHHHHHH
T ss_pred EeCCCCeEEEEeCChHhHHHHHHHHHhc
Confidence 7899999999995566778888888776
No 30
>2ogk_A Hypothetical protein; archaeglobus fulgidus, structural genomics, PSI-2, protein structure initiative; 3.00A {Archaeoglobus fulgidus} SCOP: d.77.1.2
Probab=31.18 E-value=1.3e+02 Score=22.93 Aligned_cols=65 Identities=20% Similarity=0.269 Sum_probs=39.3
Q ss_pred cChhHHHHHHHHHHHHhHHhhCCcceeEEEEecCCceeeecccccccccchhhcccCCCCCCcceEEEEeeCCcEEEEEe
Q 030434 60 VSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVR 139 (177)
Q Consensus 60 Iss~aLEAaRi~~nkyl~k~~Gk~~f~l~Irv~P~~vir~nkm~s~AgAdRl~~GMr~a~Gkp~g~vArV~~Gqiifev~ 139 (177)
|++ +++++|-.+.+.+. |.+ .+++ |-||+++..|--++.+| + |-|-+.|.
T Consensus 75 l~~-~ld~~r~~l~~~~~---~~~--~~~~--------rldKQaAy~G~v~~~d~-----d-----------d~I~v~I~ 124 (146)
T 2ogk_A 75 LGE-QAEEILSTLEDRID---EQN--VLHI--------RIDKQKAYLGEVSLTSG-----G-----------DPIAVKLR 124 (146)
T ss_dssp HGG-GHHHHHHHHHHHBC---TTC--EEEE--------EECHHHHHTTCCCBCCS-----S-----------SCEEEEEE
T ss_pred HHH-HHHHHHHHHHhccC---CCc--eEEE--------EEEhHHHhCCCEEeecC-----C-----------CcEEEEEE
Confidence 444 57777777666652 212 3433 34799888887777766 1 33444444
Q ss_pred ee--CCChHHHHHHHHH
Q 030434 140 CK--DSNSLHAQEALRR 154 (177)
Q Consensus 140 ~~--~~~~~~a~eAL~r 154 (177)
.. +...+.|++.++.
T Consensus 125 ~~~y~~k~e~~~~~~~~ 141 (146)
T 2ogk_A 125 LVTYPSKREKVIEFARE 141 (146)
T ss_dssp EECSSCCHHHHHHHHHH
T ss_pred EecccchHHHHHHHHHH
Confidence 43 6677788888764
No 31
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=31.05 E-value=46 Score=27.45 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=18.4
Q ss_pred EEeeCCcEEEEEeeeCCChHHHHHHHHHh
Q 030434 127 ARVAIGQVLLSVRCKDSNSLHAQEALRRA 155 (177)
Q Consensus 127 ArV~~Gqiifev~~~~~~~~~a~eAL~rA 155 (177)
.+|+.||+|++++.. +.+.+...|..|
T Consensus 77 ~~V~kGq~L~~ld~~--~l~~a~~~l~~a 103 (359)
T 3lnn_A 77 DEVKAGDVLFTIDSA--DLAQANSDAAKA 103 (359)
T ss_dssp CEECTTCEEEEEECS--SHHHHHHHHHHH
T ss_pred CEEcCCCEEEEEChH--HHHHHHHHHHHH
Confidence 479999999999953 455444444433
No 32
>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} SCOP: d.57.1.1
Probab=30.77 E-value=83 Score=22.08 Aligned_cols=41 Identities=7% Similarity=0.100 Sum_probs=31.3
Q ss_pred EEEEeccccccChhHHHHHHHHHHHHhHHhhCCcceeEEEEecCCc--eeeeccc
Q 030434 50 VHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFH--VLRINKM 102 (177)
Q Consensus 50 ~~Lvs~e~~qIss~aLEAaRi~~nkyl~k~~Gk~~f~l~Irv~P~~--vir~nkm 102 (177)
|.|.-....++...+++|-..-++|.+.+ .||+- -++.+++
T Consensus 3 VEi~~dK~~~lp~ga~~aL~~EL~kRl~~------------~fpd~~~~V~Vr~~ 45 (81)
T 1ghh_A 3 IEVTIAKTSPLPAGAIDALAGELSRRIQY------------AFPDNEGHVSVRYA 45 (81)
T ss_dssp EEEEEETTSCCCTTHHHHHHHHHHHHHHH------------HCSSSCCEEEEEEE
T ss_pred EEEEEecCCCCChhHHHHHHHHHHHHHHh------------hCCCCCceEEEeec
Confidence 44444455689999999999999999975 58886 6777764
No 33
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=30.44 E-value=62 Score=21.51 Aligned_cols=38 Identities=13% Similarity=0.380 Sum_probs=25.3
Q ss_pred EeeCCcEEEEEeeeCCCh---HHHHHHHHHhcccCCCceEEEEeC
Q 030434 128 RVAIGQVLLSVRCKDSNS---LHAQEALRRAKFKFPGRQKIIVSR 169 (177)
Q Consensus 128 rV~~Gqiifev~~~~~~~---~~a~eAL~rA~~KlP~~~kiv~~~ 169 (177)
-+++|++|.+|.+.+..- +.+.++|+... ....+.+.+
T Consensus 47 GL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~----~~v~l~v~R 87 (94)
T 1vb7_A 47 DLRPGDIIVAINGQSAENMLHAEAQSKIRQSA----SPLRLQLDR 87 (94)
T ss_dssp TCCTTCEEEEETTEECTTCCHHHHHHHHHTCC----SSEEEEEEC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhCC----CcEEEEEEE
Confidence 478999999999876433 66666776543 445555543
No 34
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}
Probab=36.27 E-value=11 Score=26.89 Aligned_cols=36 Identities=19% Similarity=0.429 Sum_probs=22.7
Q ss_pred CcceEEEEeeCCcEEEEEeeeCC---ChHHHHHHHHHhc
Q 030434 121 KPQGTCARVAIGQVLLSVRCKDS---NSLHAQEALRRAK 156 (177)
Q Consensus 121 kp~g~vArV~~Gqiifev~~~~~---~~~~a~eAL~rA~ 156 (177)
.|..-.|.+++|++|.+|.+.+. +.+.+.++|+.+.
T Consensus 64 spA~~~aGL~~GD~Il~ING~~v~~~~~~~~~~~l~~~~ 102 (112)
T 2lob_A 64 QPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQR 102 (112)
Confidence 44433356899999999998753 2344555555443
No 35
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=29.82 E-value=11 Score=25.35 Aligned_cols=36 Identities=11% Similarity=0.106 Sum_probs=25.4
Q ss_pred CcceEEEEeeCCcEEEEEeeeCC---ChHHHHHHHHHhc
Q 030434 121 KPQGTCARVAIGQVLLSVRCKDS---NSLHAQEALRRAK 156 (177)
Q Consensus 121 kp~g~vArV~~Gqiifev~~~~~---~~~~a~eAL~rA~ 156 (177)
.|..-.|.+++|+.|.+|.+.+. +.+.+.+.|+.+.
T Consensus 36 spA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~ 74 (88)
T 1kwa_A 36 GMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMR 74 (88)
T ss_dssp SHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCC
T ss_pred CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCC
Confidence 33333345899999999988764 4677777887764
No 36
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=28.79 E-value=25 Score=25.13 Aligned_cols=30 Identities=13% Similarity=0.281 Sum_probs=22.8
Q ss_pred EeeCCcEEEEEeeeCCC---hHHHHHHHHHhcc
Q 030434 128 RVAIGQVLLSVRCKDSN---SLHAQEALRRAKF 157 (177)
Q Consensus 128 rV~~Gqiifev~~~~~~---~~~a~eAL~rA~~ 157 (177)
.+++|++|.+|.+.+.. .+.+.+.++.+.-
T Consensus 71 gL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~ 103 (120)
T 2iwo_A 71 KLRVGDRIVTICGTSTEGMTHTQAVNLLKNASG 103 (120)
T ss_dssp CCCTTCEEEEETTEECTTCBHHHHHHHHHHCCS
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence 67899999999987543 4677777877643
No 37
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=27.84 E-value=22 Score=24.93 Aligned_cols=30 Identities=13% Similarity=0.121 Sum_probs=22.4
Q ss_pred EEeeCCcEEEEEeeeCCC---hHHHHHHHHHhc
Q 030434 127 ARVAIGQVLLSVRCKDSN---SLHAQEALRRAK 156 (177)
Q Consensus 127 ArV~~Gqiifev~~~~~~---~~~a~eAL~rA~ 156 (177)
+.+++|++|++|.+.+.. .+.+.++|+.+.
T Consensus 61 ~gL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~ 93 (117)
T 2csj_A 61 GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSG 93 (117)
T ss_dssp HHBCTTCEEEEESSCBCBTCCHHHHHHHHHHSC
T ss_pred ccCCCCCEEEEECCEECCCcCHHHHHHHHhcCC
Confidence 668999999999987542 366777777653
No 38
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=27.73 E-value=16 Score=24.13 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=22.0
Q ss_pred EeeCCcEEEEEeeeCC---ChHHHHHHHHHhc
Q 030434 128 RVAIGQVLLSVRCKDS---NSLHAQEALRRAK 156 (177)
Q Consensus 128 rV~~Gqiifev~~~~~---~~~~a~eAL~rA~ 156 (177)
++++|++|.+|.+.+. +.+.+.++|+.+.
T Consensus 45 ~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~ 76 (90)
T 2q9v_A 45 RLRSGDELISVDGTPVIGKSHQLVVQLMQQAA 76 (90)
T ss_dssp CCCTTCEEEEETTEECTTSCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 4889999999998754 4566777777664
No 39
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=27.28 E-value=25 Score=24.92 Aligned_cols=28 Identities=25% Similarity=0.303 Sum_probs=20.9
Q ss_pred EeeCCcEEEEEeeeCC---ChHHHHHHHHHh
Q 030434 128 RVAIGQVLLSVRCKDS---NSLHAQEALRRA 155 (177)
Q Consensus 128 rV~~Gqiifev~~~~~---~~~~a~eAL~rA 155 (177)
++++|++|.+|.+.+. +.+.+.++|+.+
T Consensus 72 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~ 102 (117)
T 2byg_A 72 RLQVGDRLLMVNNYSLEEVTHEEAVAILKNT 102 (117)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 4889999999998754 356667777644
No 40
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=26.97 E-value=80 Score=21.34 Aligned_cols=29 Identities=10% Similarity=0.142 Sum_probs=20.6
Q ss_pred EeeCCcEEEEEeeeCC---ChHHHHHHHHHhc
Q 030434 128 RVAIGQVLLSVRCKDS---NSLHAQEALRRAK 156 (177)
Q Consensus 128 rV~~Gqiifev~~~~~---~~~~a~eAL~rA~ 156 (177)
|+++|++|.+|.+.+. ..+.+.+.++.+.
T Consensus 62 rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~ 93 (107)
T 3nfk_A 62 RLNEGDQVVLINGRDIAEHTHDQVVLFIKASC 93 (107)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHCGG
T ss_pred ccCCCCEEEEECCEECCCCCHHHHHHHHHhcc
Confidence 3789999999987653 3356666676654
No 41
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=26.72 E-value=14 Score=26.03 Aligned_cols=29 Identities=7% Similarity=0.092 Sum_probs=20.1
Q ss_pred EeeCCcEEEEEeeeCC---ChHHHHHHHHHhc
Q 030434 128 RVAIGQVLLSVRCKDS---NSLHAQEALRRAK 156 (177)
Q Consensus 128 rV~~Gqiifev~~~~~---~~~~a~eAL~rA~ 156 (177)
++++|++|.+|.+.+. ..+.+...++.+.
T Consensus 43 ~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~ 74 (106)
T 2la8_A 43 KLQRGDIITKFNGDALEGLPFQVCYALFKGAN 74 (106)
T ss_dssp TCCTTCEEEEESSCBCSSSCHHHHHHHHHSCB
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHhCCC
Confidence 4789999999998764 3355555555443
No 42
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=26.43 E-value=15 Score=26.26 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=21.8
Q ss_pred EeeCCcEEEEEeeeCC----ChHHHHHHHHHh
Q 030434 128 RVAIGQVLLSVRCKDS----NSLHAQEALRRA 155 (177)
Q Consensus 128 rV~~Gqiifev~~~~~----~~~~a~eAL~rA 155 (177)
++++|++|.+|.+.+. +.+.+.++|+.+
T Consensus 72 ~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~~ 103 (128)
T 2db5_A 72 RLKENDQILAINHTPLDQNISHQQAIALLQQT 103 (128)
T ss_dssp CCCSSCBEEEESSCBCSTTSCHHHHHHHHHHC
T ss_pred CCCCCCEEEEECCEECCCCCCHHHHHHHHHcC
Confidence 5899999999998764 466777777764
No 43
>1w2i_A Acylphosphatase; hydrolase, thermophilic, stability, amyloid; 1.5A {Pyrococcus horikoshii} SCOP: d.58.10.1 PDB: 1v3z_A 2w4d_A
Probab=26.16 E-value=1.5e+02 Score=20.37 Aligned_cols=40 Identities=18% Similarity=0.082 Sum_probs=30.0
Q ss_pred cceEEEEeeCCcEEEEEeeeCCChHHHHHHHHHhcccCCCceEE
Q 030434 122 PQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKI 165 (177)
Q Consensus 122 p~g~vArV~~Gqiifev~~~~~~~~~a~eAL~rA~~KlP~~~ki 165 (177)
..|||--...|.|..++.+. +.+.++|..+-.+-|...+|
T Consensus 32 L~G~V~N~~dG~Vei~~~G~----~~~v~~f~~~l~~gP~~a~V 71 (91)
T 1w2i_A 32 VNGWVRNLPDGSVEAVLEGD----EERVEALIGWAHQGPPLARV 71 (91)
T ss_dssp CEEEEEECTTSCEEEEEEEE----HHHHHHHHHHTTTCSTTCEE
T ss_pred CeEEEEECCCCCEEEEEEeC----HHHHHHHHHHHHhCCCCcEE
Confidence 57999999999999999986 44556666555567766655
No 44
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=26.10 E-value=34 Score=23.23 Aligned_cols=27 Identities=15% Similarity=0.254 Sum_probs=21.5
Q ss_pred eeCCcEEEEEeeeCC---ChHHHHHHHHHh
Q 030434 129 VAIGQVLLSVRCKDS---NSLHAQEALRRA 155 (177)
Q Consensus 129 V~~Gqiifev~~~~~---~~~~a~eAL~rA 155 (177)
+++|++|.+|.+.+. +.+.+.+.|+.+
T Consensus 49 L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~ 78 (90)
T 1y7n_A 49 VRVGHRIIEINGQSVVATPHEKIVHILSNA 78 (90)
T ss_dssp CCSSCEEEEETTEECTTSCHHHHHHHHHHC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 578999999998865 567788888754
No 45
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=25.98 E-value=79 Score=21.15 Aligned_cols=36 Identities=25% Similarity=0.291 Sum_probs=24.6
Q ss_pred eeCCcEEEEEeeeCCC---hHHHHHHHHHhcccCCCceEEEEe
Q 030434 129 VAIGQVLLSVRCKDSN---SLHAQEALRRAKFKFPGRQKIIVS 168 (177)
Q Consensus 129 V~~Gqiifev~~~~~~---~~~a~eAL~rA~~KlP~~~kiv~~ 168 (177)
+++|++|.+|.+.+.. .+.+.++|+.+ +....+.+.
T Consensus 58 l~~GD~I~~ing~~v~~~~~~~~~~~l~~~----~~~v~l~v~ 96 (103)
T 2fcf_A 58 LKPGDRIVEVDGMDLRDASHEQAVEAIRKA----GNPVVFMVQ 96 (103)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHTC----CSSEEEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhC----CCcEEEEEE
Confidence 7899999999987542 46677777654 345555544
No 46
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=25.68 E-value=28 Score=22.87 Aligned_cols=33 Identities=15% Similarity=0.297 Sum_probs=21.5
Q ss_pred CCcceEEEEeeCCcEEEEEeeeCCCh---HHHHHHHHH
Q 030434 120 GKPQGTCARVAIGQVLLSVRCKDSNS---LHAQEALRR 154 (177)
Q Consensus 120 Gkp~g~vArV~~Gqiifev~~~~~~~---~~a~eAL~r 154 (177)
|.|.. |-+++|++|.+|.+.+..- +.+.++|+.
T Consensus 36 ~spA~--aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~ 71 (88)
T 3bpu_A 36 DSPRS--RGLKEGDLIVEVNKKNVQALTHNQVVDMLVE 71 (88)
T ss_dssp C--CC--TTCCTTCEEEEETTEECTTSCHHHHHHHHHT
T ss_pred CChhH--hCCCCCCEEEEECCEEcCCCCHHHHHHHHHh
Confidence 34544 5689999999999875432 556666653
No 47
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=25.36 E-value=46 Score=22.09 Aligned_cols=29 Identities=14% Similarity=0.148 Sum_probs=23.0
Q ss_pred EeeCCcEEEEEeeeCC---ChHHHHHHHHHhc
Q 030434 128 RVAIGQVLLSVRCKDS---NSLHAQEALRRAK 156 (177)
Q Consensus 128 rV~~Gqiifev~~~~~---~~~~a~eAL~rA~ 156 (177)
++++|++|.+|.+.+. +.+.+.+.|+.+.
T Consensus 46 ~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~ 77 (93)
T 3o46_A 46 LIHVGDELREVNGIPVEDKRPEEIIQILAQSQ 77 (93)
T ss_dssp CCCTTCEEEEETTEESTTSCHHHHHHHHHHCC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 5889999999987754 6678888887754
No 48
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=25.22 E-value=62 Score=29.46 Aligned_cols=28 Identities=29% Similarity=0.228 Sum_probs=23.8
Q ss_pred EeeCCcEEEEEeeeCC-ChHHHHHHHHHh
Q 030434 128 RVAIGQVLLSVRCKDS-NSLHAQEALRRA 155 (177)
Q Consensus 128 rV~~Gqiifev~~~~~-~~~~a~eAL~rA 155 (177)
+|+.||+|++|....+ ..+.|.+.|+.|
T Consensus 422 ~V~~g~~l~~i~~~~~~~~~~a~~~~~~~ 450 (474)
T 1uou_A 422 RLRRGTPWLRVHRDGPALSGPQSRALQEA 450 (474)
T ss_dssp EECTTCEEEEEEESSSSCCHHHHHHHHHH
T ss_pred EECCCCeEEEEEcCChhhHHHHHHHHHhc
Confidence 7899999999998765 477888888877
No 49
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=24.81 E-value=17 Score=25.95 Aligned_cols=29 Identities=24% Similarity=0.360 Sum_probs=22.0
Q ss_pred EeeCCcEEEEEeeeCC---ChHHHHHHHHHhc
Q 030434 128 RVAIGQVLLSVRCKDS---NSLHAQEALRRAK 156 (177)
Q Consensus 128 rV~~Gqiifev~~~~~---~~~~a~eAL~rA~ 156 (177)
++++|++|.+|.+.+. +.+.+.+.++.+.
T Consensus 71 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~ 102 (117)
T 2fne_A 71 RLKRGDQIIAVNGQSLEGVTHEEAVAILKRTK 102 (117)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 4889999999998754 3567777777654
No 50
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=24.79 E-value=17 Score=25.36 Aligned_cols=35 Identities=14% Similarity=0.138 Sum_probs=24.1
Q ss_pred CcceEEEEeeCCcEEEEEeeeCC----ChHHHHHHHHHh
Q 030434 121 KPQGTCARVAIGQVLLSVRCKDS----NSLHAQEALRRA 155 (177)
Q Consensus 121 kp~g~vArV~~Gqiifev~~~~~----~~~~a~eAL~rA 155 (177)
.|...+-++++|++|.+|.+.+. +.+.+.++|+.+
T Consensus 60 spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~~ 98 (117)
T 2o2t_A 60 SVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKA 98 (117)
T ss_dssp SHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHHC
T ss_pred CHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcC
Confidence 33333334899999999998754 466777777664
No 51
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=24.17 E-value=26 Score=23.93 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=21.3
Q ss_pred EeeCCcEEEEEeeeCC---ChHHHHHHHHHh
Q 030434 128 RVAIGQVLLSVRCKDS---NSLHAQEALRRA 155 (177)
Q Consensus 128 rV~~Gqiifev~~~~~---~~~~a~eAL~rA 155 (177)
++++|++|.+|.+.+. +.+.+.+.|+.+
T Consensus 52 ~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~ 82 (103)
T 1uep_A 52 RLHPGDELVYVDGIPVAGKTHRYVIDLMHHA 82 (103)
T ss_dssp CCCTTCEEEEETTEECTTSCHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 4789999999988754 246677777766
No 52
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=24.06 E-value=36 Score=22.76 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=19.6
Q ss_pred eeCCcEEEEEeeeCCCh---HHHHHHHHH
Q 030434 129 VAIGQVLLSVRCKDSNS---LHAQEALRR 154 (177)
Q Consensus 129 V~~Gqiifev~~~~~~~---~~a~eAL~r 154 (177)
+++|++|.+|.+.+..- +.+.++|+.
T Consensus 56 L~~GD~I~~ing~~v~~~~~~~~~~~l~~ 84 (98)
T 1ihj_A 56 LKVGDRILSLNGKDVRNSTEQAVIDLIKE 84 (98)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHhc
Confidence 78999999999875432 566677765
No 53
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=23.85 E-value=68 Score=27.61 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=16.3
Q ss_pred EEeeCCcEEEEEeeeCCChHHHHHHH
Q 030434 127 ARVAIGQVLLSVRCKDSNSLHAQEAL 152 (177)
Q Consensus 127 ArV~~Gqiifev~~~~~~~~~a~eAL 152 (177)
.+|+.||+|++++.. +...|...+
T Consensus 142 d~VkkGq~L~~ld~~--~l~~aq~~~ 165 (413)
T 3ne5_B 142 DKVQKGTPLLDLTIP--DWVEAQSEY 165 (413)
T ss_dssp CEECTTCEEEEEECC--SSHHHHHHH
T ss_pred CEEcCCCEEEEEcCH--HHHHHHHHH
Confidence 378899999999953 334444433
No 54
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=23.65 E-value=17 Score=25.81 Aligned_cols=30 Identities=17% Similarity=0.240 Sum_probs=23.4
Q ss_pred EeeCCcEEEEEeeeCC---ChHHHHHHHHHhcc
Q 030434 128 RVAIGQVLLSVRCKDS---NSLHAQEALRRAKF 157 (177)
Q Consensus 128 rV~~Gqiifev~~~~~---~~~~a~eAL~rA~~ 157 (177)
++++|++|.+|.+.+. +.+.+.+.|+.+..
T Consensus 63 ~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~ 95 (125)
T 3hpk_A 63 TVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKG 95 (125)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHHSCS
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence 6899999999998764 35677888877544
No 55
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=23.57 E-value=26 Score=25.89 Aligned_cols=27 Identities=22% Similarity=0.210 Sum_probs=21.0
Q ss_pred EeeCCcEEEEEeeeCC---ChHHHHHHHHH
Q 030434 128 RVAIGQVLLSVRCKDS---NSLHAQEALRR 154 (177)
Q Consensus 128 rV~~Gqiifev~~~~~---~~~~a~eAL~r 154 (177)
++++|++|.+|.+.+. +.+.+.++|+.
T Consensus 67 ~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~ 96 (126)
T 1wif_A 67 ILQPGDVLISVGHANVLGYTLREFLKLLQN 96 (126)
T ss_dssp SSCTTCBEEEESSSCCTTCCHHHHHHHHTS
T ss_pred CCCCCCEEEEECCEEcCCCCHHHHHHHHhc
Confidence 5889999999999876 45667777654
No 56
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=23.57 E-value=1.1e+02 Score=20.71 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=19.8
Q ss_pred EeeCCcEEEEEeeeCC---ChHHHHHHHHHh
Q 030434 128 RVAIGQVLLSVRCKDS---NSLHAQEALRRA 155 (177)
Q Consensus 128 rV~~Gqiifev~~~~~---~~~~a~eAL~rA 155 (177)
++++|++|.+|.+.+. +...+..+++.+
T Consensus 54 ~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~ 84 (110)
T 1um1_A 54 RLSLGDRILEVNGSSLLGLGYLRAVDLIRHG 84 (110)
T ss_dssp CCCTTCEEEEESSCBCSSCCHHHHHHHHHTC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 4889999999998764 345555555543
No 57
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=23.41 E-value=52 Score=22.56 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=21.3
Q ss_pred EeeCCcEEEEEeeeCCC---hHHHHHHHHHh
Q 030434 128 RVAIGQVLLSVRCKDSN---SLHAQEALRRA 155 (177)
Q Consensus 128 rV~~Gqiifev~~~~~~---~~~a~eAL~rA 155 (177)
++++|++|.+|.+.+.. .+.+.+.|+.+
T Consensus 56 ~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~ 86 (111)
T 2dlu_A 56 RLQTGDHILKIGGTNVQGMTSEQVAQVLRNC 86 (111)
T ss_dssp CCCSSCEEEEESSCCCTTSCHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 47899999999987653 46677777765
No 58
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=23.14 E-value=66 Score=29.51 Aligned_cols=48 Identities=21% Similarity=0.295 Sum_probs=32.0
Q ss_pred CCCcCCCCC---CceeEEecCCCCCCCCCCCeEEEEEeccccccChhHHHHHHHHHHHH
Q 030434 20 SRFCRGVPD---PKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKY 75 (177)
Q Consensus 20 ~~y~~gvP~---~kI~~fd~G~~~a~~~~fp~~~~Lvs~e~~qIss~aLEAaRi~~nky 75 (177)
.=+-+|||+ +||.-|+....+ +.+.|+|.-+.+. |+||=--|.-+...
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 104 (522)
T 2cja_A 54 TLLTRGAPEGQGAKVTEWKLGEDR-------IELTLQSGRYVRV-HDAIFRLRKQLAEA 104 (522)
T ss_dssp TGGGTTCSSSCCCEEEEECC---C-------EEEEEEECSSSCH-HHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCccceeeEEEecCCE-------EEEEEecCcEeeh-hHHHHHHHHHHHHH
Confidence 446789999 999999887543 8888999887665 55554444444333
No 59
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=23.00 E-value=96 Score=20.48 Aligned_cols=26 Identities=12% Similarity=0.192 Sum_probs=19.7
Q ss_pred eeCCcEEEEEeeeCCC---hHHHHHHHHH
Q 030434 129 VAIGQVLLSVRCKDSN---SLHAQEALRR 154 (177)
Q Consensus 129 V~~Gqiifev~~~~~~---~~~a~eAL~r 154 (177)
+++|++|.+|.+.+.. .+.+.++|+.
T Consensus 48 l~~GD~I~~ing~~v~~~~~~~~~~~l~~ 76 (96)
T 2v90_A 48 MQAGDRLVAVAGESVEGLGHEETVSRIQG 76 (96)
T ss_dssp CCTTEEEEEETTEECTTCCHHHHHHHHHT
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 6889999999987643 3666777765
No 60
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=22.43 E-value=94 Score=20.26 Aligned_cols=27 Identities=7% Similarity=0.147 Sum_probs=19.0
Q ss_pred eeCCcEEEEEeeeCCC-h--HHHHHHHHHh
Q 030434 129 VAIGQVLLSVRCKDSN-S--LHAQEALRRA 155 (177)
Q Consensus 129 V~~Gqiifev~~~~~~-~--~~a~eAL~rA 155 (177)
+++|++|.+|.+.+.. . +.+.++|+.+
T Consensus 46 l~~GD~I~~ing~~v~~~~~~~~~~~l~~~ 75 (90)
T 2he4_A 46 LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 75 (90)
T ss_dssp CCTTCEEEEETTEECTTSCHHHHHHHHTTS
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 6889999999887542 2 5566666543
No 61
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=22.37 E-value=37 Score=22.59 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=19.7
Q ss_pred EeeCCcEEEEEeeeCC---ChHHHHHHHHH
Q 030434 128 RVAIGQVLLSVRCKDS---NSLHAQEALRR 154 (177)
Q Consensus 128 rV~~Gqiifev~~~~~---~~~~a~eAL~r 154 (177)
++++|++|.+|.+.+. +.+.+.++++.
T Consensus 51 ~l~~GD~I~~vng~~v~~~~~~~~~~~l~~ 80 (96)
T 1d5g_A 51 RIHKGDRVLAVNGVSLEGATHKQAVETLRN 80 (96)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHS
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 4789999999998764 34556666654
No 62
>2qzb_A Uncharacterized protein YFEY; structural genomics, unknown function, PSI-2, protein struct initiative; 2.10A {Escherichia coli}
Probab=22.23 E-value=33 Score=27.42 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=28.9
Q ss_pred hhhcccCCCCCCcceEEEEeeCCcEEEEEee
Q 030434 110 RLQTGMRGAFGKPQGTCARVAIGQVLLSVRC 140 (177)
Q Consensus 110 Rl~~GMr~a~Gkp~g~vArV~~Gqiifev~~ 140 (177)
||.+||.-+=|.+..+..-++-+||.++|.+
T Consensus 44 ~lrsGm~t~~G~~v~~~qA~~~d~v~lvi~G 74 (166)
T 2qzb_A 44 RLRSGMKTANGNVVRFFEVMKGDNVAMVING 74 (166)
T ss_dssp EEEEEEEEETTEEEEEEEEEETTEEEEEEEC
T ss_pred EEeeceecCCCCEEEeeeeecCCcEEEEEEC
Confidence 5679999999999999999999999999998
No 63
>3rpf_A Molybdopterin synthase catalytic subunit; MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=22.23 E-value=1.4e+02 Score=22.92 Aligned_cols=39 Identities=23% Similarity=0.146 Sum_probs=31.9
Q ss_pred ceEEEEeeCCcEEEEEeeeCCChHHHHHHHHHh----cccCCC
Q 030434 123 QGTCARVAIGQVLLSVRCKDSNSLHAQEALRRA----KFKFPG 161 (177)
Q Consensus 123 ~g~vArV~~Gqiifev~~~~~~~~~a~eAL~rA----~~KlP~ 161 (177)
.+.+-++.+|+.++-|-+-..|...|.+|++.. +...|+
T Consensus 79 ~HR~G~l~~Ge~~v~VaVss~HR~~Af~A~~~~id~lK~~~Pi 121 (148)
T 3rpf_A 79 AHSLGDVLIGQSSFLCVSMGKNRKNALELYENFIEDFKHNAPI 121 (148)
T ss_dssp EEEEEEEETTCEEEEEEEEESSHHHHHHHHHHHHHHHHHHSCE
T ss_pred EEEEcccCCCCEEEEEEEEcccHHHHHHHHHHHHHHHHhcCCE
Confidence 445558999999999999999999999887544 677777
No 64
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=22.10 E-value=43 Score=22.76 Aligned_cols=22 Identities=14% Similarity=0.163 Sum_probs=16.8
Q ss_pred CCcceEEEEeeCCcEEEEEeeeCC
Q 030434 120 GKPQGTCARVAIGQVLLSVRCKDS 143 (177)
Q Consensus 120 Gkp~g~vArV~~Gqiifev~~~~~ 143 (177)
|.|.. |.+++|++|.+|.+.+.
T Consensus 49 ~spA~--agl~~GD~I~~vng~~v 70 (107)
T 2h2b_A 49 GGPAE--GQLQENDRVAMVNGVSM 70 (107)
T ss_dssp TSTTB--TTBCTTCEEEEETTEEC
T ss_pred CCchh--hCCCCCCEEEEECCEEC
Confidence 34554 67899999999998653
No 65
>4ap8_A Molybdopterin synthase catalytic subunit; transferase; 2.78A {Homo sapiens}
Probab=21.96 E-value=1.2e+02 Score=23.06 Aligned_cols=30 Identities=13% Similarity=0.175 Sum_probs=25.9
Q ss_pred EEEeeCCcEEEEEeeeCCChHHHHHHHHHh
Q 030434 126 CARVAIGQVLLSVRCKDSNSLHAQEALRRA 155 (177)
Q Consensus 126 vArV~~Gqiifev~~~~~~~~~a~eAL~rA 155 (177)
+-+|.+|+.++-|-+-..|...|.+|.+..
T Consensus 88 ~G~l~~ge~~v~Vav~s~HR~~Af~A~~~~ 117 (135)
T 4ap8_A 88 LGLVPVSEASIIIAVSSAHRAASLEAVSYA 117 (135)
T ss_dssp CEEEETTSEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccCCCeEEEEEEEccCHHHHHHHHHHH
Confidence 348999999999999999999999887754
No 66
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=21.64 E-value=15 Score=25.39 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=22.6
Q ss_pred EEeeCCcEEEEEeeeCC---ChHHHHHHHHHhcc
Q 030434 127 ARVAIGQVLLSVRCKDS---NSLHAQEALRRAKF 157 (177)
Q Consensus 127 ArV~~Gqiifev~~~~~---~~~~a~eAL~rA~~ 157 (177)
+.+++|++|.+|.+.+. +.+.+.+.|+.+..
T Consensus 52 ~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~ 85 (103)
T 2dc2_A 52 GGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRG 85 (103)
T ss_dssp TCCCSSEEEEEETTEESTTSCHHHHHHHHHHCCS
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence 35789999999987753 35677777776543
No 67
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=21.41 E-value=1.1e+02 Score=19.86 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=20.8
Q ss_pred EeeCCcEEEEEeeeCC---ChHHHHHHHHHh
Q 030434 128 RVAIGQVLLSVRCKDS---NSLHAQEALRRA 155 (177)
Q Consensus 128 rV~~Gqiifev~~~~~---~~~~a~eAL~rA 155 (177)
++++|++|.+|.+.+. +.+.+.++|+..
T Consensus 41 ~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~ 71 (92)
T 3cyy_A 41 NIQEGDVVLKINGTVTENMSLTDAKTLIERS 71 (92)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHTT
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 4789999999998754 456666777653
No 68
>2w36_A Endonuclease V; hypoxanthine, endonuclease, endonucleasev, hydrolase, inosine, DNA damage, DNA repair; HET: BRU; 2.10A {Thermotoga maritima} PDB: 2w35_A 3hd0_A
Probab=21.34 E-value=45 Score=27.52 Aligned_cols=47 Identities=9% Similarity=0.078 Sum_probs=33.5
Q ss_pred CCCcceEEEEeeCC-cEEEEEeeeCCChHHHHHHHHHh---cccCCCceEE
Q 030434 119 FGKPQGTCARVAIG-QVLLSVRCKDSNSLHAQEALRRA---KFKFPGRQKI 165 (177)
Q Consensus 119 ~Gkp~g~vArV~~G-qiifev~~~~~~~~~a~eAL~rA---~~KlP~~~ki 165 (177)
-|.+.|||-|-+.| ..||-=-|...+.+.|.+-.... .++||-+++.
T Consensus 162 ~ge~iG~~lRt~~~~kPlyVS~Gh~i~l~~A~~~v~~~~~~~yRlPEP~R~ 212 (225)
T 2w36_A 162 GEEIIGCVIRTKEGSAPIFVSPGHLMDVESSKRLIKAFTLPGRRIPEPTRL 212 (225)
T ss_dssp TTEEEEEEECCSTTSCCEEEEECSSCCHHHHHHHHHHHCCTTCSSCHHHHH
T ss_pred CCEEEEEEEEcCCCccCEEEeCCCCcCHHHHHHHHHHHhcCCCCCCHHHHH
Confidence 46788898888766 66664444566888888766554 5789987764
No 69
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=21.17 E-value=37 Score=24.26 Aligned_cols=41 Identities=15% Similarity=0.175 Sum_probs=29.5
Q ss_pred EeeCCcEEEEEeeeCC---ChHHHHHHHHHhcccCCCceEEEEe
Q 030434 128 RVAIGQVLLSVRCKDS---NSLHAQEALRRAKFKFPGRQKIIVS 168 (177)
Q Consensus 128 rV~~Gqiifev~~~~~---~~~~a~eAL~rA~~KlP~~~kiv~~ 168 (177)
.+++|+.|.||.+.+- .-+.+.+-|+.+..-.++.-+++-.
T Consensus 46 ~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g~~~~L~lv~p 89 (95)
T 3gge_A 46 TICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIEP 89 (95)
T ss_dssp TCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred CCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCCCEEEEEEECc
Confidence 5899999999987643 4577888888876655555555544
No 70
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=21.15 E-value=51 Score=22.65 Aligned_cols=29 Identities=24% Similarity=0.130 Sum_probs=22.2
Q ss_pred EeeCCcEEEEEeeeCC---ChHHHHHHHHHhc
Q 030434 128 RVAIGQVLLSVRCKDS---NSLHAQEALRRAK 156 (177)
Q Consensus 128 rV~~Gqiifev~~~~~---~~~~a~eAL~rA~ 156 (177)
++++|++|.+|.+.+. ..+.+.+.|+.+.
T Consensus 62 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~ 93 (108)
T 2d92_A 62 GLLPGDRLVSVNEYCLDNTSLAEAVEILKAVP 93 (108)
T ss_dssp CCCTTCEEEEESSCBCTTCCHHHHHHHHHHSC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 4799999999998754 3567777887753
No 71
>2wp4_A Molybdopterin-converting factor subunit 2 1; transferase; 2.49A {Mycobacterium tuberculosis}
Probab=20.88 E-value=1.2e+02 Score=23.24 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=33.8
Q ss_pred ceEEEEeeCCcEEEEEeeeCCChHHHHHHHHHh----cccCCC-ceEE
Q 030434 123 QGTCARVAIGQVLLSVRCKDSNSLHAQEALRRA----KFKFPG-RQKI 165 (177)
Q Consensus 123 ~g~vArV~~Gqiifev~~~~~~~~~a~eAL~rA----~~KlP~-~~ki 165 (177)
.+.+-++.+|+.++-|-+-..|...|.+|++.+ +...|+ +..+
T Consensus 88 ~HR~G~l~vGe~~v~VaVss~HR~~Af~A~~~~iD~lK~~aPiWKkE~ 135 (147)
T 2wp4_A 88 AHRTGELQIGDAAVVIGASAPHRAEAFDAARMCIELLKQEVPIWKKEF 135 (147)
T ss_dssp EEECEEECTTCEEEEEEEEESSHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred EEEEcccCCCCeEEEEEEeccCHHHHHHHHHHHHHHHHhhCCEEEEEE
Confidence 344558999999999999999999999887655 777887 4443
No 72
>1fm0_E Molybdopterin convertin factor, subunit 2; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.41.5.1 PDB: 1fma_E 1nvi_E 3bii_E 1nvj_A
Probab=20.83 E-value=1.2e+02 Score=23.28 Aligned_cols=40 Identities=18% Similarity=0.110 Sum_probs=31.8
Q ss_pred EEEeeCCcEEEEEeeeCCChHHHHHHHHHh----cccCCC-ceEE
Q 030434 126 CARVAIGQVLLSVRCKDSNSLHAQEALRRA----KFKFPG-RQKI 165 (177)
Q Consensus 126 vArV~~Gqiifev~~~~~~~~~a~eAL~rA----~~KlP~-~~ki 165 (177)
+-++.+|+.++-|-+-..|...|.+|++.+ +...|+ +..+
T Consensus 85 ~G~l~vGe~~v~VaVss~HR~~Af~A~~~~iD~lK~~aPiWKkE~ 129 (150)
T 1fm0_E 85 IGELWPGDEIVFVGVTSAHRSSAFEAGQFIMDYLKTRAPFWKREA 129 (150)
T ss_dssp CEEECTTCEEEEEEEEESSHHHHHHHHHHHHHHHHHHSCEEEEEE
T ss_pred EcccCCCCEEEEEEEEcCcHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 348999999999999999999999887655 677777 4443
No 73
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=20.70 E-value=37 Score=23.62 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=19.9
Q ss_pred EeeCCcEEEEEeeeCC---ChHHHHHHHHHh
Q 030434 128 RVAIGQVLLSVRCKDS---NSLHAQEALRRA 155 (177)
Q Consensus 128 rV~~Gqiifev~~~~~---~~~~a~eAL~rA 155 (177)
++++|++|.+|.+.+. ..+.+.++++.+
T Consensus 68 ~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~ 98 (117)
T 2ehr_A 68 ALKTGDKILEVSGVDLQNASHSEAVEAIKNA 98 (117)
T ss_dssp SCCTTCEEEEESSCBCTTCCHHHHHHHHHTS
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 4889999999998753 244566666653
No 74
>2q5w_E Molybdopterin-converting factor subunit 2; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_A*
Probab=20.60 E-value=1.2e+02 Score=23.25 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=31.5
Q ss_pred EEeeCCcEEEEEeeeCCChHHHHHHHHHh----cccCCC-ceEE
Q 030434 127 ARVAIGQVLLSVRCKDSNSLHAQEALRRA----KFKFPG-RQKI 165 (177)
Q Consensus 127 ArV~~Gqiifev~~~~~~~~~a~eAL~rA----~~KlP~-~~ki 165 (177)
-++.+|+.++-|-+-..|...|.+|++.+ +...|+ +..+
T Consensus 84 G~l~vGe~~v~VaVss~HR~~Af~A~~~~iD~lK~~aPiWKkE~ 127 (149)
T 2q5w_E 84 GPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEIVPIWKKEI 127 (149)
T ss_dssp EEECTTCEEEEEEEEESSHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_pred cccCCCCeEEEEEEEcccHHHHHHHHHHHHHHHHhhCCEEEEEE
Confidence 37999999999999999999999887655 777787 4443
No 75
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=20.53 E-value=44 Score=22.75 Aligned_cols=27 Identities=37% Similarity=0.462 Sum_probs=19.6
Q ss_pred EeeCCcEEEEEeeeCC---ChHHHHHHHHH
Q 030434 128 RVAIGQVLLSVRCKDS---NSLHAQEALRR 154 (177)
Q Consensus 128 rV~~Gqiifev~~~~~---~~~~a~eAL~r 154 (177)
++++|++|.+|.+.+. +.+.+.++++.
T Consensus 56 ~L~~GD~I~~ing~~v~~~~~~~~~~~~~~ 85 (106)
T 3axa_A 56 RLAAGDQLLSVDGRSLVGLSQERAAELMTR 85 (106)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 4789999999998754 34556666654
No 76
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=20.26 E-value=54 Score=22.54 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=21.7
Q ss_pred EeeCCcEEEEEeeeCC---ChHHHHHHHHHhc
Q 030434 128 RVAIGQVLLSVRCKDS---NSLHAQEALRRAK 156 (177)
Q Consensus 128 rV~~Gqiifev~~~~~---~~~~a~eAL~rA~ 156 (177)
++++|++|.+|.+.+. +...+..+++.+.
T Consensus 53 ~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g 84 (113)
T 2g5m_B 53 RIQVNDLLVEVDGTSLVGVTQSFAASVLRNTK 84 (113)
T ss_dssp CSCTTCBEEEETTEECSSCCHHHHHHHHHHSC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHhcCC
Confidence 4789999999998764 3566777777654
No 77
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=20.25 E-value=62 Score=22.40 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=20.1
Q ss_pred eeCCcEEEEEeeeCCCh---HHHHHHHHHh
Q 030434 129 VAIGQVLLSVRCKDSNS---LHAQEALRRA 155 (177)
Q Consensus 129 V~~Gqiifev~~~~~~~---~~a~eAL~rA 155 (177)
+++|++|.+|.+.+..- +.+.++++.+
T Consensus 56 L~~GD~I~~ing~~v~~~~~~~~~~~l~~~ 85 (114)
T 2edz_A 56 LLDGDRVLRINGVFVDKEEHAQVVELVRKS 85 (114)
T ss_dssp CCTTCEEEEESSSBCSSSCHHHHHHHHHHT
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 68899999999876433 6677777653
Done!