BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030435
(177 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UNF|X Chain X, The Crystal Structure Of The Eukaryotic Fesod From Vigna
Unguiculata Suggests A New Enzymatic Mechanism
Length = 238
Score = 187 bits (474), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 96/170 (56%), Positives = 111/170 (65%), Gaps = 3/170 (1%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAW 60
MS+ TLEFHWGKHHR YV+NL KQ+VGTEL DGKSLE++++ +YNKGD+LPAFNNAAQ W
Sbjct: 35 MSQQTLEFHWGKHHRTYVENLKKQVVGTEL-DGKSLEEIIVTAYNKGDILPAFNNAAQVW 93
Query: 61 NHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXX 120
NHDFFW LIERDFGS TQFGSGWAWL YK
Sbjct: 94 NHDFFWECMKPGGGGKPSGELLELIERDFGSFEKFLDEFKAAAATQFGSGWAWLAYKASK 153
Query: 121 XXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVW-DYSPLLTIDVWEVNIY 169
P +++D L+V+K+PNAVNPLVW Y PLLTIDVWE Y
Sbjct: 154 LDGENAANPP-SADEDNKLVVIKSPNAVNPLVWGGYYPLLTIDVWEHAYY 202
>pdb|1MY6|A Chain A, The 1.6 A Structure Of Fe-superoxide Dismutase From The
Thermophilic Cyanobacterium Thermosynechococcus
Elongatus : Correlation Of Epr And Structural
Characteristics
pdb|1MY6|B Chain B, The 1.6 A Structure Of Fe-superoxide Dismutase From The
Thermophilic Cyanobacterium Thermosynechococcus
Elongatus : Correlation Of Epr And Structural
Characteristics
Length = 199
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 83/169 (49%), Gaps = 19/169 (11%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAW 60
MS TLEFH+GKHH+ YVDNLNK TEL D KSLEDV+ +Y + FNNAAQ W
Sbjct: 19 MSAKTLEFHYGKHHKGYVDNLNKLTQDTELAD-KSLEDVIRTTYGDAAKVGIFNNAAQVW 77
Query: 61 NHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXX 120
NH FFW I FGS TQFGSGWAWLV +
Sbjct: 78 NHTFFWNSLKPGGGGVPTGDVAARINSAFGSYDEFKAQFKNAAATQFGSGWAWLVLEA-- 135
Query: 121 XXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIY 169
+L V KT NA NPLV PLLTIDVWE Y
Sbjct: 136 ----------------GTLKVTKTANAENPLVHGQVPLLTIDVWEHAYY 168
>pdb|1ISA|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISA|B Chain B, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISB|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISB|B Chain B, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISC|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISC|B Chain B, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
Length = 192
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 81/169 (47%), Gaps = 23/169 (13%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAW 60
+S +T+E+H+GKHH+ YV NLN I GT +GKSLE+++ +S +G + FNNAAQ W
Sbjct: 18 ISAETIEYHYGKHHQTYVTNLNNLIKGTAF-EGKSLEEIIRSS--EGGV---FNNAAQVW 71
Query: 61 NHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXX 120
NH F+W I FGS FGSGW WLV
Sbjct: 72 NHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLV----- 126
Query: 121 XXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIY 169
D L +V T NA PL D +PLLT+DVWE Y
Sbjct: 127 ------------KNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYY 163
>pdb|2NYB|A Chain A, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e
At 1.1 Angstrom Resolution
pdb|2NYB|B Chain B, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e
At 1.1 Angstrom Resolution
pdb|2NYB|C Chain C, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e
At 1.1 Angstrom Resolution
pdb|2NYB|D Chain D, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e
At 1.1 Angstrom Resolution
pdb|2BKB|A Chain A, Q69e-Fesod
pdb|2BKB|B Chain B, Q69e-Fesod
pdb|2BKB|C Chain C, Q69e-Fesod
pdb|2BKB|D Chain D, Q69e-Fesod
Length = 192
Score = 104 bits (259), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 81/169 (47%), Gaps = 23/169 (13%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAW 60
+S +T+E+H+GKHH+ YV NLN I GT +GKSLE+++ +S +G + FNNAA+ W
Sbjct: 18 ISAETIEYHYGKHHQTYVTNLNNLIKGTAF-EGKSLEEIIRSS--EGGV---FNNAAEVW 71
Query: 61 NHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXX 120
NH F+W I FGS FGSGW WLV
Sbjct: 72 NHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLV----- 126
Query: 121 XXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIY 169
D L +V T NA PL D +PLLT+DVWE Y
Sbjct: 127 ------------KNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYY 163
>pdb|3JS4|A Chain A, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
pdb|3JS4|B Chain B, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
pdb|3JS4|C Chain C, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
pdb|3JS4|D Chain D, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
Length = 227
Score = 103 bits (258), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 89/182 (48%), Gaps = 22/182 (12%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTE---LGDGKSLEDVVIASYNKGDLLPA-FNNA 56
+S L+ H+ HH+ YVD LNK +VGTE LG+ +SL D+V+ ++N G A FNNA
Sbjct: 37 ISSHLLDRHYNGHHKTYVDVLNKLVVGTEFEGLGN-ESLGDIVVKAHNSGSAGRAIFNNA 95
Query: 57 AQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVY 116
AQ WNHDF+W +IE FGS QFGSGW WLVY
Sbjct: 96 AQIWNHDFYWQSMKPNGGGNPPEKLREMIEHSFGSVEGFNNAFTTSGLGQFGSGWVWLVY 155
Query: 117 KXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS-PLLTIDVWEVNIYHCVLVI 175
E K+L VV T NA +PL+ PL T+DVWE Y L +
Sbjct: 156 ----------------DEDAKALKVVSTANADSPLLTQGQLPLATMDVWEHAYYLDYLNL 199
Query: 176 EK 177
K
Sbjct: 200 RK 201
>pdb|1ZA5|A Chain A, Q69h-Fesod
pdb|1ZA5|B Chain B, Q69h-Fesod
Length = 192
Score = 103 bits (258), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 80/169 (47%), Gaps = 23/169 (13%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAW 60
+S +T+E+H+GKHH+ YV NLN I GT +GKSLE+++ +S +G + FNNAA W
Sbjct: 18 ISAETIEYHYGKHHQTYVTNLNNLIKGTAF-EGKSLEEIIRSS--EGGV---FNNAAHVW 71
Query: 61 NHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXX 120
NH F+W I FGS FGSGW WLV
Sbjct: 72 NHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLV----- 126
Query: 121 XXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIY 169
D L +V T NA PL D +PLLT+DVWE Y
Sbjct: 127 ------------KNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYY 163
>pdb|3H1S|A Chain A, Crystal Structure Of Superoxide Dismutase From Francisella
Tularensis Subsp. Tularensis Schu S4
pdb|3H1S|B Chain B, Crystal Structure Of Superoxide Dismutase From Francisella
Tularensis Subsp. Tularensis Schu S4
Length = 195
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 82/169 (48%), Gaps = 24/169 (14%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAW 60
+SK+T+E+H+GKHH+ YV NLN + GTE DG++LE++V S N G FNNAAQ +
Sbjct: 22 ISKETIEYHYGKHHQTYVTNLNNLVEGTE-HDGRNLEEIVKTS-NGG----IFNNAAQVF 75
Query: 61 NHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXX 120
NH F+W LIE FGS FGSGWAWLV
Sbjct: 76 NHTFYWNCLTPNKTEASSQLKAALIET-FGSVENFKEQFSKAAIATFGSGWAWLV----- 129
Query: 121 XXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIY 169
+ L +V T NA PL + PLLT DVWE Y
Sbjct: 130 ------------KNTEGKLEIVTTSNAGCPLTENKKPLLTFDVWEHAYY 166
>pdb|3TQJ|A Chain A, Structure Of The Superoxide Dismutase (Fe) (Sodb) From
Coxiella Burnetii
pdb|3TQJ|B Chain B, Structure Of The Superoxide Dismutase (Fe) (Sodb) From
Coxiella Burnetii
Length = 210
Score = 97.4 bits (241), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 81/169 (47%), Gaps = 23/169 (13%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAW 60
+S++TLE+H GKHHRAYV+ LNK I GT + + LE+++ S G + FNNAAQ W
Sbjct: 19 ISQETLEYHHGKHHRAYVNKLNKLIEGTPF-EKEPLEEIIRKS--DGGI---FNNAAQHW 72
Query: 61 NHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXX 120
NH F+W I++ FGS FGSGWAWLV
Sbjct: 73 NHTFYWHCMSPDGGGDPSGELASAIDKTFGSLEKFKALFTDSANNHFGSGWAWLV----- 127
Query: 121 XXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIY 169
+ + L V+ T NA NP+ PL+T DVWE Y
Sbjct: 128 ------------KDNNGKLEVLSTVNARNPMTEGKKPLMTCDVWEHAYY 164
>pdb|1DT0|A Chain A, Cloning, Sequence, And Crystallographic Structure Of
Recombinant Iron Superoxide Dismutase From Pseudomonas
Ovalis
pdb|1DT0|B Chain B, Cloning, Sequence, And Crystallographic Structure Of
Recombinant Iron Superoxide Dismutase From Pseudomonas
Ovalis
pdb|1DT0|C Chain C, Cloning, Sequence, And Crystallographic Structure Of
Recombinant Iron Superoxide Dismutase From Pseudomonas
Ovalis
Length = 197
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 76/169 (44%), Gaps = 23/169 (13%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAW 60
+SK+TLEFH KHH YV NLN + GTE +GK+LE++V S G + FNNAAQ W
Sbjct: 18 ISKETLEFHHDKHHNTYVVNLNNLVPGTEF-EGKTLEEIVKTS--SGGI---FNNAAQVW 71
Query: 61 NHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXX 120
NH F+W I FGS FGSGW WLV K
Sbjct: 72 NHTFYWNCLSPNAGGQPTGALADAINAAFGSFDKFKEEFTKTSVGTFGSGWGWLVKK--- 128
Query: 121 XXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIY 169
D SL + T A PL +PLLT DVWE Y
Sbjct: 129 --------------ADGSLALASTIGAGCPLTIGDTPLLTCDVWEHAYY 163
>pdb|3SDP|A Chain A, The 2.1 Angstroms Resolution Structure Of Iron Superoxide
Dismutase From Pseudomonas Ovalis
pdb|3SDP|B Chain B, The 2.1 Angstroms Resolution Structure Of Iron Superoxide
Dismutase From Pseudomonas Ovalis
Length = 195
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 77/169 (45%), Gaps = 23/169 (13%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAW 60
+SK+TLE+H KHH YV NLN + GT +GK+LE++V +S G + FNNAAQ W
Sbjct: 18 ISKETLEYHHDKHHNTYVVNLNNLVPGTPEFEGKTLEEIVKSS--SGGI---FNNAAQVW 72
Query: 61 NHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXX 120
NH F+W I FGS FGSGWAWLV
Sbjct: 73 NHTFYWNCLSPDAGGQPTGALADAINAAFGSFDKFKEEFTKTSVGTFGSGWAWLV----- 127
Query: 121 XXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIY 169
+ D SL + T A PL +PLLT DVWE Y
Sbjct: 128 -------------KADGSLALCSTIGAGAPLTSGDTPLLTCDVWEHAYY 163
>pdb|1UES|A Chain A, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UES|B Chain B, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UES|C Chain C, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UES|D Chain D, Crystal Structure Of Porphyromonas Gingivalis Sod
Length = 191
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 79/169 (46%), Gaps = 23/169 (13%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAW 60
+SK+T+EFH GKH + YVDNLNK I+GTE + L +V S +G + FNNA Q
Sbjct: 19 ISKETVEFHHGKHLKTYVDNLNKLIIGTEF-ENADLNTIVQKS--EGGI---FNNAGQTL 72
Query: 61 NHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXX 120
NH+ ++ I++ FGS T FGSGW WL
Sbjct: 73 NHNLYFTQFRPGKGGAPKGKLGEAIDKQFGSFEKFKEEFNTAGTTLFGSGWVWLA----- 127
Query: 121 XXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIY 169
S+ + L + K PNA NP+ +PLLT DVWE Y
Sbjct: 128 ------------SDANGKLSIEKEPNAGNPVRKGLNPLLTFDVWEHAYY 164
>pdb|1QNN|A Chain A, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1QNN|B Chain B, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1QNN|C Chain C, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1QNN|D Chain D, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1UER|A Chain A, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UER|B Chain B, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UER|C Chain C, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UER|D Chain D, Crystal Structure Of Porphyromonas Gingivalis Sod
Length = 191
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 78/169 (46%), Gaps = 23/169 (13%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAW 60
+SK+T+EFH GKH + YVDNLNK I+GTE + L +V S +G + FNNA Q
Sbjct: 19 ISKETVEFHHGKHLKTYVDNLNKLIIGTEF-ENADLNTIVQKS--EGGI---FNNAGQTL 72
Query: 61 NHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXX 120
NH+ ++ I++ FGS T FGSGW WL
Sbjct: 73 NHNLYFTQFRPGKGGAPKGKLGEAIDKQFGSFEKFKEEFNTAGTTLFGSGWVWLA----- 127
Query: 121 XXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIY 169
S+ + L + K PNA NP+ +PLL DVWE Y
Sbjct: 128 ------------SDANGKLSIEKEPNAGNPVRKGLNPLLGFDVWEHAYY 164
>pdb|3LIO|A Chain A, X-Ray Structure Of The Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form I)
pdb|3LIO|B Chain B, X-Ray Structure Of The Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form I)
pdb|3LJ9|A Chain A, X-Ray Structure Of The Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis In Complex With Sodium
Azide
pdb|3LJ9|B Chain B, X-Ray Structure Of The Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis In Complex With Sodium
Azide
pdb|3LJF|A Chain A, The X-Ray Structure Of Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form Ii)
pdb|3LJF|C Chain C, The X-Ray Structure Of Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form Ii)
pdb|3LJF|B Chain B, The X-Ray Structure Of Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form Ii)
pdb|3LJF|D Chain D, The X-Ray Structure Of Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form Ii)
Length = 192
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 76/170 (44%), Gaps = 24/170 (14%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAW 60
+SK+TLEFH GKHH YV LN I GT+ + KSLE++V +S FNNAAQ W
Sbjct: 18 ISKETLEFHHGKHHNTYVVKLNGLIPGTKF-ENKSLEEIVCSSDGG-----VFNNAAQIW 71
Query: 61 NHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXX 120
NH F+W I +GS FGS W WLV
Sbjct: 72 NHTFYWNSLSPNGGGAPTGAVADAINAKWGSFDAFKEALNDKAVNNFGSSWTWLV----- 126
Query: 121 XXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWD-YSPLLTIDVWEVNIY 169
D SL +V T NA PL D +P+LT+D+WE Y
Sbjct: 127 ------------KLADGSLDIVNTSNAATPLTDDGVTPILTVDLWEHAYY 164
>pdb|2W7W|A Chain A, The Crystal Structure Of Iron Superoxide Dismutase From
Aliivibrio Salmonicida.
pdb|2W7W|B Chain B, The Crystal Structure Of Iron Superoxide Dismutase From
Aliivibrio Salmonicida
Length = 194
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 76/170 (44%), Gaps = 24/170 (14%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAW 60
+S +TL++H GKHH YV LN I GTE +GK+LE+++ S FNNAAQ W
Sbjct: 19 ISAETLDYHHGKHHNTYVVKLNGLIPGTEF-EGKTLEEIIKTSTGG-----VFNNAAQIW 72
Query: 61 NHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXX 120
NH F+W I+ FGS FGS W WLV
Sbjct: 73 NHTFYWNCLAPNAGGQPTGAVAAAIDAAFGSFEEFKAKFTDSAINNFGSSWTWLV----- 127
Query: 121 XXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWD-YSPLLTIDVWEVNIY 169
D SL +V T NA PL + +PLLT+D+WE Y
Sbjct: 128 ------------KNADGSLAIVNTSNAATPLTDEGVTPLLTVDLWEHAYY 165
>pdb|4F2N|A Chain A, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|B Chain B, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|C Chain C, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|D Chain D, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|E Chain E, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|F Chain F, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|G Chain G, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|H Chain H, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|I Chain I, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|J Chain J, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|K Chain K, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|L Chain L, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
Length = 230
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 70/169 (41%), Gaps = 20/169 (11%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAW 60
MS LE H+ KHH AYVD LN G E GK++E++++A+ + FN AAQ +
Sbjct: 50 MSPRQLELHYSKHHSAYVDKLNTLGKGYE---GKTIEEIILATTGINESKVMFNQAAQHF 106
Query: 61 NHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXX 120
NH FFW I + FGS FGSGW WL
Sbjct: 107 NHSFFWKCLSPGGKPMPKTLENA-IAKQFGSVDDFMVSFQQAGVNNFGSGWTWLCV---- 161
Query: 121 XXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIY 169
+ K LL+ T NA PL P+ T DVWE Y
Sbjct: 162 ------------DPQTKELLIDSTSNAGCPLTSGLRPIFTADVWEHAYY 198
>pdb|2CW2|A Chain A, Crystal Structure Of Superoxide Dismutase From P. Marinus
pdb|2CW2|B Chain B, Crystal Structure Of Superoxide Dismutase From P. Marinus
Length = 226
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 70/169 (41%), Gaps = 23/169 (13%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAW 60
MS +TL +H KHH+ YVD LN K+LE ++ K + FN AAQ +
Sbjct: 49 MSAETLTYHHDKHHQTYVDTLNSIAAENSTIASKTLEQII-----KTETGKPFNQAAQVY 103
Query: 61 NHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXX 120
NH FF+ LI RDFGS FGSGW WL+
Sbjct: 104 NHTFFFNNLAPNGGGEPTGKIAELITRDFGSFEKFKEDFSAAAVGHFGSGWVWLI----- 158
Query: 121 XXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIY 169
D L +V+ +A NP+ +PL+ IDVWE Y
Sbjct: 159 -------------ADDGKLKIVQGHDAGNPIRESKTPLMNIDVWEHAYY 194
>pdb|2A03|A Chain A, Superoxide Dismutase Protein From Plasmodium Berghei
pdb|2A03|B Chain B, Superoxide Dismutase Protein From Plasmodium Berghei
Length = 206
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 76/170 (44%), Gaps = 24/170 (14%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAW 60
+S++TL FH+ KHH YV+ LN I T L + KSL D++ K FNNAAQ W
Sbjct: 27 ISEETLSFHYNKHHAGYVNKLNGLIKDTPLAN-KSLTDIL-----KESTGAIFNNAAQIW 80
Query: 61 NHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXX 120
NH F+W I+ DFGS FGSGW WL
Sbjct: 81 NHSFYWDSMGPNCGGEPHGEIKEKIQEDFGSFNNFKDQFSNVLCGHFGSGWGWLAL---- 136
Query: 121 XXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS-PLLTIDVWEVNIY 169
K+ L++++T +A NP+ + P+LT DVWE Y
Sbjct: 137 -------------NKNNKLVILQTHDAGNPIKENTGIPILTCDVWEHAYY 173
>pdb|4H3E|A Chain A, Crystal Structure Of A Putative Iron Superoxide Dismutase
From Trypanosoma Cruzi Bound To Iron
pdb|4H3E|B Chain B, Crystal Structure Of A Putative Iron Superoxide Dismutase
From Trypanosoma Cruzi Bound To Iron
Length = 241
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 76/168 (45%), Gaps = 18/168 (10%)
Query: 2 SKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWN 61
S +E H+ KHH+AYVD LN + GT DGKS+E++++A N + FN AAQ +N
Sbjct: 60 SPRQMELHYTKHHKAYVDKLN-ALAGTTY-DGKSIEEIILAVANDAEKKGLFNQAAQHFN 117
Query: 62 HDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXX 121
H F++ + + FGS FGSGW WL
Sbjct: 118 HTFYFRCITPNGKAMPKSFESAVTAQ-FGSVEQFKDAFVQAGVNNFGSGWTWLCVD---- 172
Query: 122 XXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIY 169
PS K++ L++ T NA PL P+L +DVWE Y
Sbjct: 173 ----------PSNKNQ-LVIDNTSNAGCPLTKGLRPVLAVDVWEHAYY 209
>pdb|3CEI|A Chain A, Crystal Structure Of Superoxide Dismutase From
Helicobacter Pylori
pdb|3CEI|B Chain B, Crystal Structure Of Superoxide Dismutase From
Helicobacter Pylori
Length = 213
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 76/169 (44%), Gaps = 23/169 (13%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAW 60
+S +FH GKHH+ YV+NLN I GT+ + SL ++ S FNNAAQ +
Sbjct: 18 LSPVAFDFHHGKHHQTYVNNLNNLIKGTDF-EKSSLFAILTKSSG-----GVFNNAAQIY 71
Query: 61 NHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXX 120
NHDF+W L E+DFGS T FGSGW W Y
Sbjct: 72 NHDFYWDCLSPKATALSDELKGAL-EKDFGSLEKFKEDFIKSATTLFGSGWNWAAYN--- 127
Query: 121 XXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIY 169
L ++K + +++T NA P+ PLL +DVWE Y
Sbjct: 128 ----------LDTQK---IEIIQTSNAQTPVTDKKVPLLVVDVWEHAYY 163
>pdb|2BPI|A Chain A, Stucture Of Iron Dependent Superoxide Dismutase From P.
Falciparum.
pdb|2BPI|B Chain B, Stucture Of Iron Dependent Superoxide Dismutase From P.
Falciparum
Length = 206
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 74/170 (43%), Gaps = 24/170 (14%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAW 60
+S++TL FH+ KHH YV+ LN I T + KSL D+V S FNNAAQ W
Sbjct: 19 ISEETLNFHYNKHHAGYVNKLNTLIKDTPFAE-KSLLDIVKESSG-----AIFNNAAQIW 72
Query: 61 NHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXX 120
NH F+W I+ DFGS FGSGW WL
Sbjct: 73 NHTFYWDSMGPDCGGEPHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWLALN--- 129
Query: 121 XXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS-PLLTIDVWEVNIY 169
+ L++++T +A NP+ + P+LT D+WE Y
Sbjct: 130 --------------NNNKLVILQTHDAGNPIKDNTGIPILTCDIWEHAYY 165
>pdb|2GOJ|A Chain A, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Plasmodium Falciparum
pdb|2GOJ|B Chain B, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Plasmodium Falciparum
Length = 197
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 74/170 (43%), Gaps = 24/170 (14%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAW 60
+S++TL FH+ KHH YV+ LN I T + KSL D+V S FNNAAQ W
Sbjct: 18 ISEETLNFHYNKHHAGYVNKLNTLIKDTPFAE-KSLLDIVKESSG-----AIFNNAAQIW 71
Query: 61 NHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXX 120
NH F+W I+ DFGS FGSGW WL
Sbjct: 72 NHTFYWDSMGPDCGGEPHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWLAL---- 127
Query: 121 XXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS-PLLTIDVWEVNIY 169
+ L++++T +A NP+ + P+LT D+WE Y
Sbjct: 128 -------------NNNNKLVILQTHDAGNPIKDNTGIPILTCDIWEHAYY 164
>pdb|2AWP|A Chain A, Crystal Structure Of Plasmodium Knowlesi Structure Of Iron
Super-Oxide Dismutase
pdb|2AWP|B Chain B, Crystal Structure Of Plasmodium Knowlesi Structure Of Iron
Super-Oxide Dismutase
Length = 198
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 74/170 (43%), Gaps = 24/170 (14%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAW 60
+S++TL FH+ KHH YV+ LN I T KSL +++ K FNNAAQ W
Sbjct: 19 ISEETLNFHYNKHHAGYVNKLNGLIKDTPFAT-KSLVEIM-----KESTGAIFNNAAQIW 72
Query: 61 NHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXX 120
NH F+W I+ DFGS FGSGW WLV
Sbjct: 73 NHSFYWDSMGPNCGGEPHGEIKEKIQEDFGSFNNFKNEFSNVLCGHFGSGWGWLVL---- 128
Query: 121 XXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS-PLLTIDVWEVNIY 169
+ L++++T +A NP+ + P+LT D+WE Y
Sbjct: 129 -------------NNNNKLVILQTHDAGNPIKDNTGIPILTCDIWEHAYY 165
>pdb|3ESF|A Chain A, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
pdb|3ESF|B Chain B, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
pdb|3ESF|C Chain C, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
pdb|3ESF|D Chain D, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
Length = 197
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 69/170 (40%), Gaps = 22/170 (12%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAW 60
+SK+ + FH+ KHH YV LN KS+E+++ + + P FN AAQ +
Sbjct: 20 ISKEQVTFHYDKHHMGYVTKLNAAANSNPALAAKSVEEII-----RTEKGPIFNLAAQIF 74
Query: 61 NHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXX 120
NH+F+W I FGS FGSGWAWLV
Sbjct: 75 NHNFYWESMSPNGGGEPSGKLAEAIRASFGSFAKFKEEFTNAAVGHFGSGWAWLVQDTTT 134
Query: 121 XXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLV-WDYSPLLTIDVWEVNIY 169
K L V +T +A PL D P+LT DVWE Y
Sbjct: 135 ----------------KKLKVFQTHDAGCPLTEADLKPILTCDVWEHAYY 168
>pdb|1XUQ|A Chain A, Crystal Structure Of Soda-1 (Ba4499) From Bacillus
Anthracis At 1.8a Resolution.
pdb|1XUQ|B Chain B, Crystal Structure Of Soda-1 (Ba4499) From Bacillus
Anthracis At 1.8a Resolution
Length = 212
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 69/170 (40%), Gaps = 22/170 (12%)
Query: 3 KDTLEFHWGKHHRAYVDNLNKQIVG-TELGDGKSLEDVV--IASYNKGDLLPAFNNAAQA 59
K+T+ H KHH Y+ NLN + G EL D KS+E++V + + NN
Sbjct: 31 KETMNIHHTKHHNTYITNLNAALEGHAELAD-KSVEELVANLNEVPEAIRTAVRNNGGGH 89
Query: 60 WNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXX 119
NH FFW IE FGS T+FGSGWAWLV
Sbjct: 90 ANHTFFWTILSPNGGGQPVGELATAIEAKFGSFDAFKEEFAKAGATRFGSGWAWLVV--- 146
Query: 120 XXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIY 169
+ L V TPN +PL +P++ +DVWE Y
Sbjct: 147 ---------------NNGELEVTSTPNQDSPLTEGKTPVIGLDVWEHAYY 181
>pdb|1Y67|A Chain A, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|1Y67|B Chain B, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|1Y67|C Chain C, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|1Y67|D Chain D, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|2AW9|A Chain A, Superoxide Dismutase With Manganese From Deinococcus
Radiodurans
pdb|2AW9|B Chain B, Superoxide Dismutase With Manganese From Deinococcus
Radiodurans
Length = 229
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 72/180 (40%), Gaps = 37/180 (20%)
Query: 5 TLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV-----IASYNKGDLLPAFNNAAQA 59
T+E H KHH+ YVDN NK + GTE D +E ++ + + KG L NNA
Sbjct: 24 TMEIHHTKHHQTYVDNANKALEGTEFAD-LPVEQLIQQLDRVPADKKGALR---NNAGGH 79
Query: 60 WNHDFFWXXXXXXXXXXXXXXXXX----LIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 115
NH FW I FGS T+FGSGWAWLV
Sbjct: 80 ANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFKQKFEDAAKTRFGSGWAWLV 139
Query: 116 YKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDY------SPLLTIDVWEVNIY 169
KD L VV T N NPL+ + +P+L +DVWE Y
Sbjct: 140 V------------------KDGKLDVVSTANQDNPLMGEAIAGVSGTPILGVDVWEHAYY 181
>pdb|3KKY|A Chain A, Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans In The Orthorhombic Space Group
P212121: A Case Study Of Mistaken Identity
pdb|3KKY|B Chain B, Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans In The Orthorhombic Space Group
P212121: A Case Study Of Mistaken Identity
Length = 211
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 72/180 (40%), Gaps = 37/180 (20%)
Query: 5 TLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV-----IASYNKGDLLPAFNNAAQA 59
T+E H KHH+ YVDN NK + GTE D +E ++ + + KG L NNA
Sbjct: 23 TMEIHHTKHHQTYVDNANKALEGTEFAD-LPVEQLIQQLDRVPADKKGALR---NNAGGH 78
Query: 60 WNHDFFWXXXXXXXXXXXXXXXXX----LIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 115
NH FW I FGS T+FGSGWAWLV
Sbjct: 79 ANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFKQKFEDAAKTRFGSGWAWLV 138
Query: 116 YKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDY------SPLLTIDVWEVNIY 169
KD L VV T N NPL+ + +P+L +DVWE Y
Sbjct: 139 V------------------KDGKLDVVSTANQDNPLMGEAIAGVSGTPILGVDVWEHAYY 180
>pdb|2CDY|A Chain A, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CDY|B Chain B, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CDY|C Chain C, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CDY|D Chain D, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CE4|A Chain A, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CE4|B Chain B, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
Length = 231
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 72/180 (40%), Gaps = 37/180 (20%)
Query: 5 TLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV-----IASYNKGDLLPAFNNAAQA 59
T+E H KHH+ YVDN NK + GTE D +E ++ + + KG L NNA
Sbjct: 43 TMEIHHTKHHQTYVDNANKALEGTEFAD-LPVEQLIQQLDRVPADKKGALR---NNAGGH 98
Query: 60 WNHDFFWXXXXXXXXXXXXXXXXX----LIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 115
NH FW I FGS T+FGSGWAWLV
Sbjct: 99 ANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFKQKFEDAAKTRFGSGWAWLV 158
Query: 116 YKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDY------SPLLTIDVWEVNIY 169
KD L VV T N NPL+ + +P+L +DVWE Y
Sbjct: 159 V------------------KDGKLDVVSTANQDNPLMGEAIAGVSGTPILGVDVWEHAYY 200
>pdb|3TJT|A Chain A, Crystal Structure Analysis Of The Superoxide Dismutase
From Clostridium Difficile
Length = 208
Score = 69.7 bits (169), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 75/171 (43%), Gaps = 20/171 (11%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQ 58
+ K+T++ H KH++AYVD LN + SL +++ + S K NNA
Sbjct: 22 IDKETMKLHHDKHYQAYVDKLNAALEKYPELYNYSLCELLQNLDSLPKDIATTVRNNAGG 81
Query: 59 AWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKX 118
A+NH FF+ I+RDFGS FGSGWAWLV
Sbjct: 82 AYNHKFFFDIMTPEKTIPSESLKEA-IDRDFGSFEKFKQEFQKSALDVFGSGWAWLV--- 137
Query: 119 XXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIY 169
+ KD L ++ TPN +P+ + +P++ +DVWE Y
Sbjct: 138 --------------ATKDGKLSIMTTPNQDSPVSKNLTPIIGLDVWEHAYY 174
>pdb|2RCV|A Chain A, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|B Chain B, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|C Chain C, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|D Chain D, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|E Chain E, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|F Chain F, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|G Chain G, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|H Chain H, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
Length = 202
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 66/171 (38%), Gaps = 20/171 (11%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQ 58
+ K+T+ H KHH YV NLNK + G KS+E++V + S + NN
Sbjct: 19 IDKETMTIHHTKHHNTYVTNLNKAVEGNTALANKSVEELVADLDSVPENIRTAVRNNGGG 78
Query: 59 AWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKX 118
NH FW I FGS +FGSGWAWLV
Sbjct: 79 HANHKLFWTLLSPNGGGEPTGALAEEINSVFGSFDKFKEQFAAAAAGRFGSGWAWLVV-- 136
Query: 119 XXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIY 169
+ L + TPN +PL +P+L +DVWE Y
Sbjct: 137 ----------------NNGKLEITSTPNQDSPLSEGKTPILGLDVWEHAYY 171
>pdb|2GPC|A Chain A, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Trypanosoma Cruzi
pdb|2GPC|B Chain B, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Trypanosoma Cruzi
Length = 194
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 67/170 (39%), Gaps = 22/170 (12%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAW 60
+SK + H+ KHH+ YV LN KS+E+++ + + P FN AAQ +
Sbjct: 19 LSKQQVTLHYDKHHQGYVTKLNAAAQTNSALATKSIEEII-----RTEKGPIFNLAAQIF 73
Query: 61 NHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXX 120
NH F+W I FGS FGSGWAWLV
Sbjct: 74 NHTFYWESMXPNGGGEPTGKVADEINASFGSFAKFKEEFTNVAVGHFGSGWAWLV----- 128
Query: 121 XXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVW-DYSPLLTIDVWEVNIY 169
L V +T +A PL + PLLT DVWE Y
Sbjct: 129 -----------KDTNSGKLKVYQTHDAGCPLTEPNLKPLLTCDVWEHAYY 167
>pdb|3MDS|A Chain A, Maganese Superoxide Dismutase From Thermus Thermophilus
pdb|3MDS|B Chain B, Maganese Superoxide Dismutase From Thermus Thermophilus
pdb|1MNG|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1MNG|B Chain B, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
Length = 203
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 66/171 (38%), Gaps = 19/171 (11%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQ 58
+ T+E H KHH AYV NLN + G +E ++ +A+ + NN
Sbjct: 20 IDAKTMEIHHQKHHGAYVTNLNAALEKYPYLHGVEVEVLLRHLAALPQDIQTAVRNNGGG 79
Query: 59 AWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKX 118
NH FW I+ FG +FGSGWAWLV
Sbjct: 80 HLNHSLFWRLLTPGGAKEPVGELKKAIDEQFGGFQALKEKLTQAAMGRFGSGWAWLV--- 136
Query: 119 XXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIY 169
+ L V+ TPN NP++ ++P++ IDVWE Y
Sbjct: 137 --------------KDPFGKLHVLSTPNQDNPVMEGFTPIVGIDVWEHAYY 173
>pdb|1VEW|A Chain A, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1VEW|B Chain B, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1VEW|C Chain C, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1VEW|D Chain D, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1MMM|A Chain A, Distinct Metal Environment In Iron-Substituted Manganese
Superoxide Dismutase Provides A Structural Basis Of
Metal Specificity
pdb|1MMM|B Chain B, Distinct Metal Environment In Iron-Substituted Manganese
Superoxide Dismutase Provides A Structural Basis Of
Metal Specificity
pdb|1D5N|A Chain A, Crystal Structure Of E. Coli Mnsod At 100k
pdb|1D5N|B Chain B, Crystal Structure Of E. Coli Mnsod At 100k
pdb|1D5N|C Chain C, Crystal Structure Of E. Coli Mnsod At 100k
pdb|1D5N|D Chain D, Crystal Structure Of E. Coli Mnsod At 100k
pdb|3K9S|A Chain A, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3K9S|B Chain B, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3K9S|C Chain C, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3K9S|D Chain D, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3OT7|A Chain A, Escherichia Coli Apo-Manganese Superoxide Dismutase
pdb|3OT7|B Chain B, Escherichia Coli Apo-Manganese Superoxide Dismutase
pdb|3OT7|C Chain C, Escherichia Coli Apo-Manganese Superoxide Dismutase
pdb|3OT7|D Chain D, Escherichia Coli Apo-Manganese Superoxide Dismutase
Length = 205
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 72/179 (40%), Gaps = 36/179 (20%)
Query: 3 KDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPA------FNNA 56
K T+E H KHH+ YV+N N + +E+++ K D LPA NNA
Sbjct: 20 KQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELIT----KLDQLPADKKTVLRNNA 75
Query: 57 AQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVY 116
NH FW IERDFGS ++FGSGWAWLV
Sbjct: 76 GGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAEFEKAAASRFGSGWAWLVL 133
Query: 117 KXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS------PLLTIDVWEVNIY 169
K DK L VV T N +PL+ + P++ +DVWE Y
Sbjct: 134 KG-----------------DK-LAVVSTANQDSPLMGEAISGASGFPIMGLDVWEHAYY 174
>pdb|1EN6|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
pdb|1EN6|B Chain B, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
pdb|1EN6|C Chain C, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
pdb|1EN6|D Chain D, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
Length = 205
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 72/179 (40%), Gaps = 36/179 (20%)
Query: 3 KDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPA------FNNA 56
K T+E H KHH+ YV+N N + +E+++ K D LPA NNA
Sbjct: 20 KQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELIT----KLDQLPADKKTVLRNNA 75
Query: 57 AQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVY 116
NH FW IERDFGS ++FGSGWAWLV
Sbjct: 76 GGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAEFEKAAASRFGSGWAWLVL 133
Query: 117 KXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS------PLLTIDVWEVNIY 169
K DK L VV T N +PL+ + P++ +DVWE Y
Sbjct: 134 KG-----------------DK-LAVVSTANLDSPLMGEAISGASGFPIMGLDVWEHAYY 174
>pdb|1I0H|A Chain A, Crystal Structure Of The E. Coli Manganese Superoxide
Dismutase Mutant Y174f At 1.35 Angstroms Resolution.
pdb|1I0H|B Chain B, Crystal Structure Of The E. Coli Manganese Superoxide
Dismutase Mutant Y174f At 1.35 Angstroms Resolution.
pdb|1IX9|A Chain A, Crystal Structure Of The E. Coli Manganase(Iii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1IX9|B Chain B, Crystal Structure Of The E. Coli Manganase(Iii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1IXB|A Chain A, Crystal Structure Of The E. Coli Manganese(Ii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1IXB|B Chain B, Crystal Structure Of The E. Coli Manganese(Ii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1ZLZ|A Chain A, Re-Evaluation Of The Low-Temperature Azide In Mn-Dependent
Superoxide Dismutase
pdb|1ZLZ|B Chain B, Re-Evaluation Of The Low-Temperature Azide In Mn-Dependent
Superoxide Dismutase
Length = 205
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 71/175 (40%), Gaps = 36/175 (20%)
Query: 3 KDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPA------FNNA 56
K T+E H KHH+ YV+N N + +E+++ K D LPA NNA
Sbjct: 20 KQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELIT----KLDQLPADKKTVLRNNA 75
Query: 57 AQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVY 116
NH FW IERDFGS ++FGSGWAWLV
Sbjct: 76 GGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAEFEKAAASRFGSGWAWLVL 133
Query: 117 KXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDY------SPLLTIDVWE 165
K DK L VV T N +PL+ + P++ +DVWE
Sbjct: 134 KG-----------------DK-LAVVSTANQDSPLMGEAISGASGFPIMGLDVWE 170
>pdb|1EN4|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
pdb|1EN4|B Chain B, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
pdb|1EN4|C Chain C, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
pdb|1EN4|D Chain D, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
Length = 205
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 72/179 (40%), Gaps = 36/179 (20%)
Query: 3 KDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPA------FNNA 56
K T+E H KHH+ YV+N N + +E+++ K D LPA NNA
Sbjct: 20 KQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELIT----KLDQLPADKKTVLRNNA 75
Query: 57 AQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVY 116
NH FW IERDFGS ++FGSGWAWLV
Sbjct: 76 GGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAEFEKAAASRFGSGWAWLVL 133
Query: 117 KXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDY------SPLLTIDVWEVNIY 169
K DK L VV T N +PL+ + P++ +DVWE Y
Sbjct: 134 KG-----------------DK-LAVVSTANHDSPLMGEAISGASGFPIMGLDVWEHAYY 174
>pdb|1EN5|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
pdb|1EN5|B Chain B, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
pdb|1EN5|C Chain C, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
pdb|1EN5|D Chain D, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
Length = 205
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 72/179 (40%), Gaps = 36/179 (20%)
Query: 3 KDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPA------FNNA 56
K T+E H KHH+ +V+N N + +E+++ K D LPA NNA
Sbjct: 20 KQTMEIHHTKHHQTFVNNANAALESLPEFANLPVEELIT----KLDQLPADKKTVLRNNA 75
Query: 57 AQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVY 116
NH FW IERDFGS ++FGSGWAWLV
Sbjct: 76 GGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAEFEKAAASRFGSGWAWLVL 133
Query: 117 KXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDY------SPLLTIDVWEVNIY 169
K DK L VV T N +PL+ + P++ +DVWE Y
Sbjct: 134 KG-----------------DK-LAVVSTANQDSPLMGEAISGASGFPIMGLDVWEHAYY 174
>pdb|1JR9|A Chain A, Crystal Structure Of Manganese Superoxide Dismutases From
Bacillus Halodenitrificans
Length = 202
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 64/171 (37%), Gaps = 20/171 (11%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQ 58
+ K+T+ H KHH YV LN + G E KSL D++ + + + NN
Sbjct: 19 IDKETMNIHHTKHHNTYVTKLNGALEGHEDLKNKSLNDLISNLDAVPENIRTAVRNNGGG 78
Query: 59 AWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKX 118
NH FW I +GS +FGSGWAWLV
Sbjct: 79 HANHSLFWKLMSPNGGGKPTGEVADKINDKYGSFEKFQEEFAAAAAGRFGSGWAWLVV-- 136
Query: 119 XXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIY 169
+ + ++ TP NPL+ P+L +DVWE Y
Sbjct: 137 ----------------NNGEIEIMSTPIQDNPLMEGKKPILGLDVWEHAYY 171
>pdb|1XRE|A Chain A, Crystal Structure Of Soda-2 (Ba5696) From Bacillus
Anthracis At 1.8a Resolution.
pdb|1XRE|B Chain B, Crystal Structure Of Soda-2 (Ba5696) From Bacillus
Anthracis At 1.8a Resolution
Length = 217
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 66/171 (38%), Gaps = 20/171 (11%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQ 58
+ +TL H GKHH YV+NLN + KSLE+++ + + K + NN
Sbjct: 29 IDSNTLSIHHGKHHATYVNNLNAALENYSELHNKSLEELLCNLETLPKEIVTAVRNNGGG 88
Query: 59 AWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKX 118
+ H FW +I+ F + ++FGSG+ WLV
Sbjct: 89 HYCHSLFWEVMSPRGGGEPNGDVAKVIDYYFNTFDNLKDQLSKAAISRFGSGYGWLVL-- 146
Query: 119 XXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIY 169
+ L V+ TPN PL PLL IDVWE Y
Sbjct: 147 ----------------DGEELSVMSTPNQDTPLQEGKIPLLVIDVWEHAYY 181
>pdb|1I08|A Chain A, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
pdb|1I08|B Chain B, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
pdb|1I08|C Chain C, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
pdb|1I08|D Chain D, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
Length = 205
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 71/179 (39%), Gaps = 36/179 (20%)
Query: 3 KDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPA------FNNA 56
K T+E H K H+ YV+N N + +E+++ K D LPA NNA
Sbjct: 20 KQTMEIHHTKAHQTYVNNANAALESLPEFANLPVEELIT----KLDQLPADKKTVLRNNA 75
Query: 57 AQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVY 116
NH FW IERDFGS ++FGSGWAWLV
Sbjct: 76 GGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAEFEKAAASRFGSGWAWLVL 133
Query: 117 KXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDY------SPLLTIDVWEVNIY 169
K DK L VV T N +PL+ + P++ +DVWE Y
Sbjct: 134 KG-----------------DK-LAVVSTANQDSPLMGEAISGASGFPIMGLDVWEHAYY 174
>pdb|1GV3|A Chain A, The 2.0 Angstrom Resolution Structure Of The Catalytic
Portion Of A Cyanobacterial Membrane-Bound Manganese
Superoxide Dismutase
pdb|1GV3|B Chain B, The 2.0 Angstrom Resolution Structure Of The Catalytic
Portion Of A Cyanobacterial Membrane-Bound Manganese
Superoxide Dismutase
Length = 248
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 62/168 (36%), Gaps = 19/168 (11%)
Query: 4 DTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWN 61
+T++ H KHH AYV+NLN + S+E ++ + S + NN N
Sbjct: 57 ETMKLHHDKHHAAYVNNLNNALKKHPELQNSSVEALLRDLNSVPEDIRTTVRNNGGGHLN 116
Query: 62 HDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXX 121
H FW I + FGS +FGSGW WLV
Sbjct: 117 HTIFWQIMSPDGGGQPTGDIAQEINQTFGSFEEFKKQFNQAGGDRFGSGWVWLV------ 170
Query: 122 XXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIY 169
L VV TPN NP++ P++ DVWE Y
Sbjct: 171 -----------RNPQGQLQVVSTPNQDNPIMEGSYPIMGNDVWEHAYY 207
>pdb|2CW3|A Chain A, X-Ray Structure Of Pmsod2, Superoxide Dismutase From
Perkinsus Marinus
pdb|2CW3|B Chain B, X-Ray Structure Of Pmsod2, Superoxide Dismutase From
Perkinsus Marinus
Length = 280
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 72/174 (41%), Gaps = 25/174 (14%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGK-SLEDVVIASYNKGDLLPAFNNAAQA 59
+S T++FH+ KHH+ Y+ L + T L + + +L+ +V ++ FN A Q
Sbjct: 95 ISAATVDFHYNKHHQGYIQKL---LDATGLPESRINLKSLVTLGPDRAG-ENVFNAAGQI 150
Query: 60 WNHDFFWXXXXXXXXXXXXX--XXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYK 117
+NH+ +W LI +G+ FGSGW WLV+
Sbjct: 151 YNHNMYWLSMVPTSGSGRHVPPRLLKLIRARWGNVDEMKENFMRKATALFGSGWIWLVW- 209
Query: 118 XXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWEVNIY 169
+++ L +V T +A +PL D PL T DVWE Y
Sbjct: 210 ---------------DTRERRLDLVGTKDAHSPLSEDAGKIPLFTCDVWEHAYY 248
>pdb|1EM1|A Chain A, X-Ray Crystal Structure For Human Manganese Superoxide
Dismutase, Q143a
pdb|1EM1|B Chain B, X-Ray Crystal Structure For Human Manganese Superoxide
Dismutase, Q143a
Length = 198
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 63/178 (35%), Gaps = 38/178 (21%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN 54
++ ++ H KHH AYV+NLN E+ + KGD L PA
Sbjct: 18 INAQIMQLHHSKHHAAYVNNLN------------VTEEKYQEALAKGDVTAQIALQPALK 65
Query: 55 -NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAW 113
N NH FW I+RDFGS GSGW W
Sbjct: 66 FNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 125
Query: 114 LVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWEVNIY 169
L + +++ L + PNA +PL PLL IDVWE Y
Sbjct: 126 LGF----------------NKERGHLQIAACPNA-DPLQGTTGLIPLLGIDVWEHAYY 166
>pdb|1VAR|A Chain A, Mitochondrial Manganese Superoxide Dismutase Variant With
Ile 58 Replaced By Thr
pdb|1VAR|B Chain B, Mitochondrial Manganese Superoxide Dismutase Variant With
Ile 58 Replaced By Thr
Length = 198
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 63/172 (36%), Gaps = 26/172 (15%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFN-NAAQA 59
++ ++ H KHH AYV+NLN + + + + DV + L PA N
Sbjct: 18 INAQIMQLHHSKHHAAYVNNLN--VTEEKYQEALAKGDVTAQT----ALQPALKFNGGGH 71
Query: 60 WNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXX 119
NH FW I+RDFGS GSGW WL +
Sbjct: 72 INHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGF--- 128
Query: 120 XXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWEVNIY 169
+++ L + PN +PL PLL IDVWE Y
Sbjct: 129 -------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWEHAYY 166
>pdb|3DC5|A Chain A, Crystal Structure Of A Manganese Superoxide Dismutases
From Caenorhabditis Elegans
pdb|3DC5|C Chain C, Crystal Structure Of A Manganese Superoxide Dismutases
From Caenorhabditis Elegans
Length = 195
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 64/176 (36%), Gaps = 38/176 (21%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFN------ 54
+S + ++ H KHH YV+NLN+ +E+ + + +KG+L A
Sbjct: 19 ISHEIMQLHHQKHHATYVNNLNQ------------IEEKLHEAVSKGNLKEAIALQPALK 66
Query: 55 -NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAW 113
N NH FW I+RDFGS GSGW W
Sbjct: 67 FNGGGHINHSIFWTNLAKDGGEPSKELMDT-IKRDFGSLDNLQKRLSDITIAVQGSGWGW 125
Query: 114 LVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIY 169
L Y +KDK L + N +PL PL IDVWE Y
Sbjct: 126 LGY----------------CKKDKILKIATCANQ-DPLE-GMVPLFGIDVWEHAYY 163
>pdb|2QKC|A Chain A, Structural And Kinetic Study Of The Differences Between
Human And E.Coli Manganese Superoxide Dismutases
pdb|2QKC|C Chain C, Structural And Kinetic Study Of The Differences Between
Human And E.Coli Manganese Superoxide Dismutases
Length = 196
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 62/178 (34%), Gaps = 38/178 (21%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN 54
++ ++ H KHH AYV+NLN E+ + KGD L PA
Sbjct: 18 INAQIMQLHHSKHHAAYVNNLN------------VTEEKYQEALAKGDVTAQIALQPALK 65
Query: 55 -NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAW 113
N NH FW I+RDFGS GSGW W
Sbjct: 66 LNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 125
Query: 114 LVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWEVNIY 169
L + +++ L + PN +PL PLL IDVWE Y
Sbjct: 126 LGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWEHAYY 166
>pdb|2QKA|A Chain A, Structural And Kinetic Study Of The Differences Between
Human And E.Coli Manganese Superoxide Dismutases
pdb|2QKA|C Chain C, Structural And Kinetic Study Of The Differences Between
Human And E.Coli Manganese Superoxide Dismutases
Length = 196
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 62/178 (34%), Gaps = 38/178 (21%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN 54
++ ++ H KHH AYV+NLN E+ + KGD L PA
Sbjct: 18 INAQIMQLHHSKHHAAYVNNLN------------VTEEKYQEALAKGDVTAQIALQPALK 65
Query: 55 -NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAW 113
N NH FW I+RDFGS GSGW W
Sbjct: 66 ANGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 125
Query: 114 LVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWEVNIY 169
L + +++ L + PN +PL PLL IDVWE Y
Sbjct: 126 LGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWEHAYY 166
>pdb|1N0J|A Chain A, The Structure Of Human Mitochondrial Mn3+ Superoxide
Dismutase Reveals A Novel Tetrameric Interface Of Two
4-Helix Bundles
pdb|1N0J|B Chain B, The Structure Of Human Mitochondrial Mn3+ Superoxide
Dismutase Reveals A Novel Tetrameric Interface Of Two
4-Helix Bundles
Length = 199
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 62/178 (34%), Gaps = 38/178 (21%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN 54
++ ++ H KHH AYV+NLN E+ + KGD L PA
Sbjct: 19 INAQIMQLHHSKHHAAYVNNLN------------VTEEKYQEALAKGDVTAQIALQPALK 66
Query: 55 -NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAW 113
N NH FW I+RDFGS GSGW W
Sbjct: 67 FNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 126
Query: 114 LVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWEVNIY 169
L + +++ L + PN +PL PLL IDVWE Y
Sbjct: 127 LGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWEHAYY 167
>pdb|1MSD|A Chain A, Comparison Of The Crystal Structures Of Genetically
Engineered Human Manganese Superoxide Dismutase And
Manganese Superoxide Dismutase From Thermus
Thermophilus. Differences In Dimer-Dimer Interactions.
pdb|1MSD|B Chain B, Comparison Of The Crystal Structures Of Genetically
Engineered Human Manganese Superoxide Dismutase And
Manganese Superoxide Dismutase From Thermus
Thermophilus. Differences In Dimer-Dimer Interactions.
pdb|1LUV|A Chain A, Catalytic And Structural Effects Of Amino-acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
pdb|1LUV|B Chain B, Catalytic And Structural Effects Of Amino-acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
pdb|2ADQ|B Chain B, Human Manganese Superoxide Dismutase
Length = 198
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 62/178 (34%), Gaps = 38/178 (21%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN 54
++ ++ H KHH AYV+NLN E+ + KGD L PA
Sbjct: 18 INAQIMQLHHSKHHAAYVNNLN------------VTEEKYQEALAKGDVTAQIALQPALK 65
Query: 55 -NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAW 113
N NH FW I+RDFGS GSGW W
Sbjct: 66 FNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 125
Query: 114 LVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWEVNIY 169
L + +++ L + PN +PL PLL IDVWE Y
Sbjct: 126 LGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWEHAYY 166
>pdb|1PL4|A Chain A, Crystal Structure Of Human Mnsod Y166f Mutant
pdb|1PL4|B Chain B, Crystal Structure Of Human Mnsod Y166f Mutant
pdb|1PL4|C Chain C, Crystal Structure Of Human Mnsod Y166f Mutant
pdb|1PL4|D Chain D, Crystal Structure Of Human Mnsod Y166f Mutant
Length = 198
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 61/174 (35%), Gaps = 38/174 (21%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN 54
++ ++ H KHH AYV+NLN E+ + KGD L PA
Sbjct: 18 INAQIMQLHHSKHHAAYVNNLN------------VTEEKYQEALAKGDVTAQIALQPALK 65
Query: 55 -NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAW 113
N NH FW I+RDFGS GSGW W
Sbjct: 66 FNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 125
Query: 114 LVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWE 165
L + +++ L + PN +PL PLL IDVWE
Sbjct: 126 LGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWE 162
>pdb|1QNM|A Chain A, Human Manganese Superoxide Dismutase Mutant Q143n
pdb|1QNM|B Chain B, Human Manganese Superoxide Dismutase Mutant Q143n
Length = 198
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 62/178 (34%), Gaps = 38/178 (21%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN 54
++ ++ H KHH AYV+NLN E+ + KGD L PA
Sbjct: 18 INAQIMQLHHSKHHAAYVNNLN------------VTEEKYQEALAKGDVTAQIALQPALK 65
Query: 55 -NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAW 113
N NH FW I+RDFGS GSGW W
Sbjct: 66 FNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 125
Query: 114 LVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWEVNIY 169
L + +++ L + PN +PL PLL IDVWE Y
Sbjct: 126 LGF----------------NKERGHLQIAACPNN-DPLQGTTGLIPLLGIDVWEHAYY 166
>pdb|1XIL|A Chain A, Hydrogen Bonding In Human Manganese Superoxide Dismutase
Containing 3- Fluorotyrosine
pdb|1XIL|B Chain B, Hydrogen Bonding In Human Manganese Superoxide Dismutase
Containing 3- Fluorotyrosine
Length = 198
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 61/174 (35%), Gaps = 38/174 (21%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN 54
++ ++ H KHH A+V+NLN E+ + KGD L PA
Sbjct: 18 INAQIMQLHHSKHHAAFVNNLN------------VTEEKXQEALAKGDVTAQIALQPALK 65
Query: 55 -NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAW 113
N NH FW I+RDFGS GSGW W
Sbjct: 66 FNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 125
Query: 114 LVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWE 165
L + +++ L + PN +PL PLL IDVWE
Sbjct: 126 LGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWE 162
>pdb|1AP5|A Chain A, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
pdb|1AP5|B Chain B, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
pdb|1AP6|A Chain A, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
pdb|1AP6|B Chain B, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
Length = 198
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 62/178 (34%), Gaps = 38/178 (21%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN 54
++ ++ H KHH A+V+NLN E+ + KGD L PA
Sbjct: 18 INAQIMQLHHSKHHAAFVNNLN------------VTEEKYQEALAKGDVTAQIALQPALK 65
Query: 55 -NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAW 113
N NH FW I+RDFGS GSGW W
Sbjct: 66 FNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 125
Query: 114 LVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWEVNIY 169
L + +++ L + PN +PL PLL IDVWE Y
Sbjct: 126 LGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWEHAYY 166
>pdb|3C3T|A Chain A, Role Of A Glutamate Bridge Spanning The Dimeric Interface
Of Human Manganese Superoxide Dismutase
pdb|3C3T|B Chain B, Role Of A Glutamate Bridge Spanning The Dimeric Interface
Of Human Manganese Superoxide Dismutase
Length = 198
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 62/178 (34%), Gaps = 38/178 (21%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN 54
++ ++ H KHH AYV+NLN E+ + KGD L PA
Sbjct: 18 INAQIMQLHHSKHHAAYVNNLN------------VTEEKYQEALAKGDVTAQIALQPALK 65
Query: 55 -NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAW 113
N NH FW I+RDFGS GSGW W
Sbjct: 66 FNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 125
Query: 114 LVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWEVNIY 169
L + +++ L + PN +PL PLL IDVW+ Y
Sbjct: 126 LGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWDHAYY 166
>pdb|1ZTE|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Suerpoxide Dismutase
pdb|1ZTE|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Suerpoxide Dismutase
pdb|1ZTE|C Chain C, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Suerpoxide Dismutase
pdb|1ZTE|D Chain D, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Suerpoxide Dismutase
Length = 198
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 62/178 (34%), Gaps = 38/178 (21%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN 54
++ ++ H KHH A+V+NLN E+ + KGD L PA
Sbjct: 18 INAQIMQLHHSKHHAAHVNNLN------------VTEEKYQEALAKGDVTAQIALQPALK 65
Query: 55 -NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAW 113
N NH FW I+RDFGS GSGW W
Sbjct: 66 FNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 125
Query: 114 LVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWEVNIY 169
L + +++ L + PN +PL PLL IDVWE Y
Sbjct: 126 LGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWEHAYY 166
>pdb|1XDC|A Chain A, Hydrogen Bonding In Human Manganese Superoxide Dismutase
Containing 3- Fluorotyrosine
pdb|1XDC|B Chain B, Hydrogen Bonding In Human Manganese Superoxide Dismutase
Containing 3- Fluorotyrosine
Length = 198
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 60/174 (34%), Gaps = 38/174 (21%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN 54
++ ++ H KHH A V+NLN E+ + KGD L PA
Sbjct: 18 INAQIMQLHHSKHHAAXVNNLN------------VTEEKXQEALAKGDVTAQIALQPALK 65
Query: 55 -NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAW 113
N NH FW I+RDFGS GSGW W
Sbjct: 66 FNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 125
Query: 114 LVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWE 165
L + +++ L + PN +PL PLL IDVWE
Sbjct: 126 LGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWE 162
>pdb|3C3S|A Chain A, Role Of A Glutamate Bridge Spanning The Dimeric Interface
Of Human Manganese Superoxide Dismutase
pdb|3C3S|B Chain B, Role Of A Glutamate Bridge Spanning The Dimeric Interface
Of Human Manganese Superoxide Dismutase
Length = 198
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 61/178 (34%), Gaps = 38/178 (21%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN 54
++ ++ H KHH AYV+NLN E+ + KGD L PA
Sbjct: 18 INAQIMQLHHSKHHAAYVNNLN------------VTEEKYQEALAKGDVTAQIALQPALK 65
Query: 55 -NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAW 113
N NH FW I+RDFGS GSGW W
Sbjct: 66 FNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 125
Query: 114 LVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWEVNIY 169
L + +++ L + PN +PL PLL IDVW Y
Sbjct: 126 LGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWAHAYY 166
>pdb|1LUW|A Chain A, Catalytic And Structural Effects Of Amino-Acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
pdb|1LUW|B Chain B, Catalytic And Structural Effects Of Amino-Acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
Length = 198
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 61/178 (34%), Gaps = 38/178 (21%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN 54
++ ++ H K H AYV+NLN E+ + KGD L PA
Sbjct: 18 INAQIMQLHHSKQHAAYVNNLN------------VTEEKYQEALAKGDVTAQIALQPALK 65
Query: 55 -NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAW 113
N NH FW I+RDFGS GSGW W
Sbjct: 66 FNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 125
Query: 114 LVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWEVNIY 169
L + +++ L + PN +PL PLL IDVWE Y
Sbjct: 126 LGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWEHAYY 166
>pdb|2ADP|A Chain A, Nitrated Human Manganese Superoxide Dismutase
Length = 198
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 61/178 (34%), Gaps = 38/178 (21%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN 54
++ ++ H KHH A V+NLN E+ + KGD L PA
Sbjct: 18 INAQIMQLHHSKHHAAXVNNLN------------VTEEKYQEALAKGDVTAQIALQPALK 65
Query: 55 -NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAW 113
N NH FW I+RDFGS GSGW W
Sbjct: 66 FNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 125
Query: 114 LVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWEVNIY 169
L + +++ L + PN +PL PLL IDVWE Y
Sbjct: 126 LGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWEHAYY 166
>pdb|2GDS|A Chain A, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
pdb|2GDS|B Chain B, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
pdb|2GDS|C Chain C, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
pdb|2GDS|D Chain D, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
Length = 198
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 62/178 (34%), Gaps = 38/178 (21%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN 54
++ ++ H K+H AYV+NLN E+ + KGD L PA
Sbjct: 18 INAQIMQLHHSKNHAAYVNNLN------------VTEEKYQEALAKGDVTAQIALQPALK 65
Query: 55 -NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAW 113
N NH FW I+RDFGS GSGW W
Sbjct: 66 FNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 125
Query: 114 LVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWEVNIY 169
L + +++ L + PN +PL PLL IDVWE Y
Sbjct: 126 LGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWEHAYY 166
>pdb|1ZUQ|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|1ZUQ|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
Length = 198
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 61/178 (34%), Gaps = 38/178 (21%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN 54
++ ++ H KHH A V+NLN E+ + KGD L PA
Sbjct: 18 INAQIMQLHHSKHHAAVVNNLN------------VTEEKYQEALAKGDVTAQIALQPALK 65
Query: 55 -NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAW 113
N NH FW I+RDFGS GSGW W
Sbjct: 66 FNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 125
Query: 114 LVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWEVNIY 169
L + +++ L + PN +PL PLL IDVWE Y
Sbjct: 126 LGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWEHAYY 166
>pdb|1ZSP|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|1ZSP|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
Length = 198
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 61/178 (34%), Gaps = 38/178 (21%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN 54
++ ++ H KHH A V+NLN E+ + KGD L PA
Sbjct: 18 INAQIMQLHHSKHHAAAVNNLN------------VTEEKYQEALAKGDVTAQIALQPALK 65
Query: 55 -NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAW 113
N NH FW I+RDFGS GSGW W
Sbjct: 66 FNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 125
Query: 114 LVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWEVNIY 169
L + +++ L + PN +PL PLL IDVWE Y
Sbjct: 126 LGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWEHAYY 166
>pdb|1PM9|A Chain A, Crystal Structure Of Human Mnsod H30n, Y166f Mutant
pdb|1PM9|B Chain B, Crystal Structure Of Human Mnsod H30n, Y166f Mutant
Length = 198
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 61/174 (35%), Gaps = 38/174 (21%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN 54
++ ++ H K+H AYV+NLN E+ + KGD L PA
Sbjct: 18 INAQIMQLHHSKNHAAYVNNLN------------VTEEKYQEALAKGDVTAQIALQPALK 65
Query: 55 -NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAW 113
N NH FW I+RDFGS GSGW W
Sbjct: 66 FNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 125
Query: 114 LVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWE 165
L + +++ L + PN +PL PLL IDVWE
Sbjct: 126 LGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWE 162
>pdb|2P4K|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|2P4K|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|2P4K|C Chain C, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|2P4K|D Chain D, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
Length = 198
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 61/178 (34%), Gaps = 38/178 (21%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN 54
++ ++ H KHH A V+NLN E+ + KGD L PA
Sbjct: 18 INAQIMQLHHSKHHAANVNNLN------------VTEEKYQEALAKGDVTAQIALQPALK 65
Query: 55 -NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAW 113
N NH FW I+RDFGS GSGW W
Sbjct: 66 FNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 125
Query: 114 LVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWEVNIY 169
L + +++ L + PN +PL PLL IDVWE Y
Sbjct: 126 LGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWEHAYY 166
>pdb|1JA8|A Chain A, Kinetic Analysis Of Product Inhibition In Human Manganese
Superoxide Dismutase
pdb|1JA8|B Chain B, Kinetic Analysis Of Product Inhibition In Human Manganese
Superoxide Dismutase
Length = 198
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 61/178 (34%), Gaps = 38/178 (21%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN 54
++ ++ H KHH AYV+NLN E+ + KGD L PA
Sbjct: 18 INAQIMQLHHSKHHAAYVNNLN------------VTEEKYQEALAKGDVTAQIALQPALK 65
Query: 55 -NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAW 113
N NH FW I+RDFGS GSGW W
Sbjct: 66 FNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 125
Query: 114 LVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWEVNIY 169
L + +++ L + PN +PL PLL IDV E Y
Sbjct: 126 LGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVAEHAYY 166
>pdb|1SZX|A Chain A, Role Of Hydrogen Bonding In The Active Site Of Human
Manganese Superoxide Dismutase
pdb|1SZX|B Chain B, Role Of Hydrogen Bonding In The Active Site Of Human
Manganese Superoxide Dismutase
Length = 198
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 62/178 (34%), Gaps = 38/178 (21%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN 54
++ ++ H KHH A+V+NLN E+ + KGD L PA
Sbjct: 18 INAQIMQLHHSKHHAAFVNNLN------------VTEEKYQEALAKGDVTAQIALQPALK 65
Query: 55 -NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAW 113
N NH FW I+RDFGS GSG+ W
Sbjct: 66 FNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGFGW 125
Query: 114 LVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWEVNIY 169
L + +++ L + PN +PL PLL IDVWE Y
Sbjct: 126 LGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWEHAYY 166
>pdb|1N0N|A Chain A, Catalytic And Structural Effects Of Amino-Acid
Substitution At His30 In Human Manganese Superoxide
Dismutase
pdb|1N0N|B Chain B, Catalytic And Structural Effects Of Amino-Acid
Substitution At His30 In Human Manganese Superoxide
Dismutase
Length = 199
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 61/178 (34%), Gaps = 38/178 (21%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN 54
++ ++ H K H AYV+NLN E+ + KGD L PA
Sbjct: 19 INAQIMQLHHSKVHAAYVNNLN------------VTEEKYQEALAKGDVTAQIALQPALK 66
Query: 55 -NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAW 113
N NH FW I+RDFGS GSGW W
Sbjct: 67 FNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGW 126
Query: 114 LVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWEVNIY 169
L + +++ L + PN +PL PLL IDVWE Y
Sbjct: 127 LGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWEHAYY 167
>pdb|3DC6|A Chain A, Crystal Structure Of A Manganese Superoxide Dismutases
From Caenorhabditis Elegans
pdb|3DC6|C Chain C, Crystal Structure Of A Manganese Superoxide Dismutases
From Caenorhabditis Elegans
Length = 198
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 63/178 (35%), Gaps = 39/178 (21%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN 54
+S + ++ H KHH YV+NLN+ +E+ + + +KG+ L PA
Sbjct: 19 ISHEIMQLHHQKHHATYVNNLNQ------------IEEKLHEAVSKGNVKEAIALQPALK 66
Query: 55 -NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAW 113
N NH FW I+ DFGS GSGW W
Sbjct: 67 FNGGGHINHSIFWTNLAKDGGEPSAELLTA-IKSDFGSLDNLQKQLSASTVAVQGSGWGW 125
Query: 114 LVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPL--VWDYSPLLTIDVWEVNIY 169
L Y P K +L V T +PL PL IDVWE Y
Sbjct: 126 LGY--------------CPKGK---ILKVATCANQDPLEATTGLVPLFGIDVWEHAYY 166
>pdb|1AR4|A Chain A, X-Ray Structure Analysis Of The Cambialistic Superoxide
Dismutase From Propionibacterium Shermanii Active With
Fe Or Mn
pdb|1AR4|B Chain B, X-Ray Structure Analysis Of The Cambialistic Superoxide
Dismutase From Propionibacterium Shermanii Active With
Fe Or Mn
pdb|1AR5|A Chain A, X-Ray Structure Of The Cambialistic Superoxide Dismutase
From Propionibacterium Shermanii Active With Fe Or Mn
pdb|1AR5|B Chain B, X-Ray Structure Of The Cambialistic Superoxide Dismutase
From Propionibacterium Shermanii Active With Fe Or Mn
pdb|1AVM|A Chain A, The Cambialistic Superoxide Dismutase (Fe-Sod) Of P.
Shermanii Coordinated By Azide
pdb|1AVM|B Chain B, The Cambialistic Superoxide Dismutase (Fe-Sod) Of P.
Shermanii Coordinated By Azide
pdb|1BS3|A Chain A, P.Shermanii Sod(Fe+3) Fluoride
pdb|1BS3|B Chain B, P.Shermanii Sod(Fe+3) Fluoride
pdb|1BSM|A Chain A, P.Shermanii Sod(Fe+3) 140k Ph8
pdb|1BSM|B Chain B, P.Shermanii Sod(Fe+3) 140k Ph8
pdb|1BT8|A Chain A, P.Shermanii Sod(Fe+3) Ph 10.0
pdb|1BT8|B Chain B, P.Shermanii Sod(Fe+3) Ph 10.0
Length = 201
Score = 39.7 bits (91), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 64/171 (37%), Gaps = 23/171 (13%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAW 60
+S + +E H KHH+AYVD N + +L + + D + NK + AFN A
Sbjct: 19 ISGEIMELHHDKHHKAYVDGANTAL--DKLAEARDKAD--FGAINKLEKDLAFNLAGHV- 73
Query: 61 NHDFFWXXXXXXXXXXXXXXXX--XLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKX 118
NH FW I+ FGS GSGWA LV+
Sbjct: 74 NHSVFWKNMAPKGSAPERPTDELGAAIDEFFGSFDNMKAQFTAAATGIQGSGWASLVWD- 132
Query: 119 XXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIY 169
PL K + ++ + N L PLL +D+WE Y
Sbjct: 133 -----------PL----GKRINTLQFYDHQNNLPAGSIPLLQLDMWEHAFY 168
>pdb|1MA1|A Chain A, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|B Chain B, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|C Chain C, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|D Chain D, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|E Chain E, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|F Chain F, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
Length = 205
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 63/172 (36%), Gaps = 25/172 (14%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGK-SLEDVVIASYNKGDLLPAFNNAAQA 59
+S++ L H KHH+AYVD N + +L + + S DV I K L +
Sbjct: 25 ISREQLTIHHQKHHQAYVDGANALL--RKLDEARESDTDVDI----KAALKELSFHVGGY 78
Query: 60 WNHDFFWXXX--XXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYK 117
H FFW IE+DFGS + GSGWA L Y
Sbjct: 79 VLHLFFWGNMGPADECGGEPSGKLAEYIEKDFGSFERFRKEFSQAAISAEGSGWAVLTY- 137
Query: 118 XXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIY 169
++ L +++ ++ + LL +DVWE Y
Sbjct: 138 ---------------CQRTDRLFIMQVEKHNVNVIPHFRILLVLDVWEHAYY 174
>pdb|1KKC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Mnsod
pdb|1KKC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Mnsod
pdb|1KKC|X Chain X, Crystal Structure Of Aspergillus Fumigatus Mnsod
pdb|1KKC|Y Chain Y, Crystal Structure Of Aspergillus Fumigatus Mnsod
Length = 221
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 60/173 (34%), Gaps = 27/173 (15%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAW 60
+S+ +E H KHH+ YV+ LN + + K+ E + FN
Sbjct: 32 ISQQIMELHHKKHHQTYVNGLNAALEAQK----KAAEATDVPKLVSVQQAIKFNGGGHI- 86
Query: 61 NHDFFWXXXXXXXXXXXXXXXXXL----IERDFGSXXXXXXXXXXXXXTQFGSGWAWLVY 116
NH FW + IE+ +GS GSGW WLV
Sbjct: 87 NHSLFWKNLAPEKSGGGKIDQAPVLKAAIEQRWGSFDKFKDAFNTTLLGIQGSGWGWLV- 145
Query: 117 KXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIY 169
++ K L + T + +P V +P+ +D+WE Y
Sbjct: 146 ----------------TDGPKGKLDITTTHDQDP-VTGAAPVFGVDMWEHAYY 181
>pdb|1GN3|A Chain A, H145q Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN3|B Chain B, H145q Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase
Length = 207
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 56/169 (33%), Gaps = 21/169 (12%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAW 60
+S E H KHH YV N + +L + ++ ED N+ +L AFN A
Sbjct: 20 ISGQINELHHSKHHATYVKGANDAVA--KLEEARAKEDHSAILLNEKNL--AFNLAGHV- 74
Query: 61 NHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXX 120
NH +W I FGS T GSGWA L +
Sbjct: 75 NHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGSGWAALGWDTL- 133
Query: 121 XXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIY 169
LL+ + + PLL +D+WE Y
Sbjct: 134 ---------------GNKLLIFQVYDQQTNFPLGIVPLLLLDMWEHAFY 167
>pdb|1GN4|A Chain A, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN4|B Chain B, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN4|C Chain C, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN4|D Chain D, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase
Length = 207
Score = 34.3 bits (77), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 56/169 (33%), Gaps = 21/169 (12%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAW 60
+S E H KHH YV N + +L + ++ ED N+ +L AFN A
Sbjct: 20 ISGQINELHHSKHHATYVKGANDAVA--KLEEARAKEDHSAILLNEKNL--AFNLAGHV- 74
Query: 61 NHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXX 120
NH +W I FGS T GSGWA L +
Sbjct: 75 NHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGSGWAALGWDTL- 133
Query: 121 XXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIY 169
LL+ + + PLL +D+WE Y
Sbjct: 134 ---------------GNKLLIFQVYDEQTNFPLGIVPLLLLDMWEHAFY 167
>pdb|1IDS|A Chain A, X-Ray Structure Analysis Of The Iron-Dependent Superoxide
Dismutase From Mycobacterium Tuberculosis At 2.0
Angstroms Resolutions Reveals Novel Dimer-Dimer
Interactions
pdb|1IDS|B Chain B, X-Ray Structure Analysis Of The Iron-Dependent Superoxide
Dismutase From Mycobacterium Tuberculosis At 2.0
Angstroms Resolutions Reveals Novel Dimer-Dimer
Interactions
pdb|1IDS|C Chain C, X-Ray Structure Analysis Of The Iron-Dependent Superoxide
Dismutase From Mycobacterium Tuberculosis At 2.0
Angstroms Resolutions Reveals Novel Dimer-Dimer
Interactions
pdb|1IDS|D Chain D, X-Ray Structure Analysis Of The Iron-Dependent Superoxide
Dismutase From Mycobacterium Tuberculosis At 2.0
Angstroms Resolutions Reveals Novel Dimer-Dimer
Interactions
Length = 207
Score = 34.3 bits (77), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 56/169 (33%), Gaps = 21/169 (12%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAW 60
+S E H KHH YV N + +L + ++ ED N+ +L AFN A
Sbjct: 20 ISGQINELHHSKHHATYVKGANDAVA--KLEEARAKEDHSAILLNEKNL--AFNLAGHV- 74
Query: 61 NHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXX 120
NH +W I FGS T GSGWA L +
Sbjct: 75 NHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGSGWAALGWDTL- 133
Query: 121 XXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIY 169
LL+ + + PLL +D+WE Y
Sbjct: 134 ---------------GNKLLIFQVYDHQTNFPLGIVPLLLLDMWEHAFY 167
>pdb|1GN6|A Chain A, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN6|B Chain B, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN6|C Chain C, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN6|D Chain D, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase
Length = 207
Score = 33.9 bits (76), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 56/169 (33%), Gaps = 21/169 (12%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAW 60
+S E H KHH YV N + +L + ++ ED N+ +L AFN A
Sbjct: 20 ISGQINELHHSKHHATYVKGANDAVA--KLEEARAKEDHSAILLNEKNL--AFNLAGHV- 74
Query: 61 NHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXX 120
NH +W I FGS T GSGWA L +
Sbjct: 75 NHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGSGWAALGWDTL- 133
Query: 121 XXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIY 169
LL+ + + PLL +D+WE Y
Sbjct: 134 ---------------GNKLLIFQVYDHQTNFPLAIVPLLLLDMWEHAFY 167
>pdb|1GN2|A Chain A, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|B Chain B, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|C Chain C, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|D Chain D, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|E Chain E, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|F Chain F, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|G Chain G, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|H Chain H, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis
Length = 207
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 55/169 (32%), Gaps = 21/169 (12%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAW 60
+S E H KHH YV N + +L + ++ ED N+ +L AFN A
Sbjct: 20 ISGQINELHHSKHHATYVKGANDAVA--KLEEARAKEDHSAILLNEKNL--AFNLAGHV- 74
Query: 61 NHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXX 120
NH +W I FGS T G GWA L +
Sbjct: 75 NHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGCGWAALGWDTL- 133
Query: 121 XXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIY 169
LL+ + + PLL +D+WE Y
Sbjct: 134 ---------------GNKLLIFQVYDHQTNFPLGIVPLLLLDMWEHAFY 167
>pdb|3QVN|A Chain A, Crystal Structure Of Cytosolic Mnsod3 From Candida
Albicans
Length = 206
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 55/171 (32%), Gaps = 27/171 (15%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKS-LEDVVIASYNKGDLLPAFNNAAQA 59
+SK+ + H KHH AYV+ N I E GK L+ VV N F+
Sbjct: 24 ISKEINDLHINKHHVAYVNGYNAAIDALEKAVGKRDLKSVVEIQQN-----IKFHGGGHT 78
Query: 60 WNHDFFWXXXXXXXXXX-----XXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWL 114
NH FW I +GS GSGWA++
Sbjct: 79 -NHSLFWKNLAPVSKGGGKHPDTSSALGKQIVAQYGSVSNLIDITNSKLAGIQGSGWAFI 137
Query: 115 VYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWE 165
V + +L VV T N P++ ID WE
Sbjct: 138 VKN---------------KQNGGALDVVTTANQDTISAPHLVPIIAIDAWE 173
>pdb|3EVK|A Chain A, Crystal Structure Of The Metal-Bound Superoxide Dismutase
From Pyrobaculum Aerophilum
pdb|3EVK|B Chain B, Crystal Structure Of The Metal-Bound Superoxide Dismutase
From Pyrobaculum Aerophilum
pdb|3EVK|C Chain C, Crystal Structure Of The Metal-Bound Superoxide Dismutase
From Pyrobaculum Aerophilum
pdb|3EVK|D Chain D, Crystal Structure Of The Metal-Bound Superoxide Dismutase
From Pyrobaculum Aerophilum
Length = 222
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 63/177 (35%), Gaps = 35/177 (19%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTE-LGDGKSLEDVV-----IASYNKGDLLPAFN 54
+S + ++ H KHH+ YV+ N + E G++ D+ ++ + G +L
Sbjct: 34 ISAEIMQLHHQKHHQGYVNGANAALEKLEKFRKGEAQIDIRAVLRDLSFHLNGHIL---- 89
Query: 55 NAAQAWNHDFFW--XXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWA 112
H FW LI + FGS G GWA
Sbjct: 90 -------HSIFWPNMAPPGKGGGKPGGKIADLINKFFGSFEKFKEEFSQAAKNVEGVGWA 142
Query: 113 WLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIY 169
LVY+ P E+ +L ++ N ++ D LL +DVWE Y
Sbjct: 143 ILVYE--------------PLEEQLLILQIEKHNLMHAA--DAQVLLALDVWEHAYY 183
>pdb|3BFR|A Chain A, The Crystal Structure Of Sod2 From Saccharomyces
Cerevisiae
Length = 215
Score = 30.4 bits (67), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 60/182 (32%), Gaps = 37/182 (20%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVI---ASYNKGDLLPAFNN-- 55
+S E H+ KHH+ YV+ N T + + L D++ + N ++ N
Sbjct: 26 ISGQINELHYTKHHQTYVNGFN-----TAVDQFQELSDLLAKEPSPANARKMIAIQQNIK 80
Query: 56 --AAQAWNHDFFWXXXXXXXXXXXXXXXXXL---IERDFGSXXXXXXXXXXXXXTQFGSG 110
NH FW L I+ FGS GSG
Sbjct: 81 FHGGGFTNHCLFWENLAPESQGGGEPPTGALAKAIDEQFGSLDELIKLTNTKLAGVQGSG 140
Query: 111 WAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPN---AVNPLVWDYSPLLTIDVWEVN 167
WA++V L VV+T N PLV PL+ ID WE
Sbjct: 141 WAFIVKNL---------------SNGGKLDVVQTYNQDTVTGPLV----PLVAIDAWEHA 181
Query: 168 IY 169
Y
Sbjct: 182 YY 183
>pdb|4FFK|A Chain A, X-Ray Structure Of Iron Superoxide Dismutase From
Acidilobus Saccharovorans
Length = 223
Score = 30.4 bits (67), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 58/171 (33%), Gaps = 22/171 (12%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAW 60
+S +TL +H KHH YV+ N + E L D+ + + ++ FN
Sbjct: 35 ISAETLRYHHDKHHLGYVNGANAALDKLEKYLNGQLTDIDVRAVSRD---FEFNYGGHIL 91
Query: 61 NHDFFWXXXXXXXXXXXXXXXXXL--IERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKX 118
H +W I + FGS G GWA L Y
Sbjct: 92 -HTLYWLNMAPKGKGGGTPGGAIGDAINKFFGSFDKFKKLFGDAAKNVEGVGWAILAYD- 149
Query: 119 XXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIY 169
P D +L V+ N N + + PLL +DV+E Y
Sbjct: 150 -------------PVTGDLRILQVEKHN--NVVTTNLIPLLAVDVFEHAYY 185
>pdb|3RN4|A Chain A, Crystal Structure Of Iron-Substituted Sod2 From
Saccharomyces Cerevisiae
Length = 215
Score = 30.4 bits (67), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 60/182 (32%), Gaps = 37/182 (20%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVI---ASYNKGDLLPAFNN-- 55
+S E H+ KHH+ YV+ N T + + L D++ + N ++ N
Sbjct: 26 ISGQINELHYTKHHQTYVNGFN-----TAVDQFQELSDLLAKEPSPANARKMIAIQQNIK 80
Query: 56 --AAQAWNHDFFWXXXXXXXXXXXXXXXXXL---IERDFGSXXXXXXXXXXXXXTQFGSG 110
NH FW L I+ FGS GSG
Sbjct: 81 FHGGGFTNHCLFWENLAPESQGGGEPPTGALAKAIDEQFGSLDELIKLTNTKLAGVQGSG 140
Query: 111 WAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPN---AVNPLVWDYSPLLTIDVWEVN 167
WA++V L VV+T N PLV PL+ ID WE
Sbjct: 141 WAFIVKNL---------------SNGGKLDVVQTYNQDTVTGPLV----PLVAIDAWEHA 181
Query: 168 IY 169
Y
Sbjct: 182 YY 183
>pdb|3AK1|A Chain A, Superoxide Dismutase From Aeropyrum Pernix K1, Apo-Form
pdb|3AK1|B Chain B, Superoxide Dismutase From Aeropyrum Pernix K1, Apo-Form
pdb|3AK1|C Chain C, Superoxide Dismutase From Aeropyrum Pernix K1, Apo-Form
pdb|3AK1|D Chain D, Superoxide Dismutase From Aeropyrum Pernix K1, Apo-Form
pdb|3AK2|A Chain A, Superoxide Dismutase From Aeropyrum Pernix K1, Mn-Bound
Form
pdb|3AK2|B Chain B, Superoxide Dismutase From Aeropyrum Pernix K1, Mn-Bound
Form
pdb|3AK2|C Chain C, Superoxide Dismutase From Aeropyrum Pernix K1, Mn-Bound
Form
pdb|3AK2|D Chain D, Superoxide Dismutase From Aeropyrum Pernix K1, Mn-Bound
Form
pdb|3AK3|A Chain A, Superoxide Dismutase From Aeropyrum Pernix K1, Fe-Bound
Form
pdb|3AK3|B Chain B, Superoxide Dismutase From Aeropyrum Pernix K1, Fe-Bound
Form
pdb|3AK3|C Chain C, Superoxide Dismutase From Aeropyrum Pernix K1, Fe-Bound
Form
pdb|3AK3|D Chain D, Superoxide Dismutase From Aeropyrum Pernix K1, Fe-Bound
Form
Length = 214
Score = 29.6 bits (65), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 55/169 (32%), Gaps = 23/169 (13%)
Query: 3 KDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNH 62
++ ++ H KHH YV N + E ++ V A +FN A H
Sbjct: 25 EEIMKLHHQKHHNTYVKGANAALEKIEKHLKGEIQIDVRAVMRDF----SFNYAGHIM-H 79
Query: 63 DFFW--XXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXX 120
FW LIE+ FG T G GW L +
Sbjct: 80 TIFWPNMAPPGKGGGTPGGRVADLIEKQFGGFEKFKALFSAAAKTVEGVGWGVLAFD--- 136
Query: 121 XXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIY 169
P ++ +L V+ N + + P+L IDVWE Y
Sbjct: 137 -----------PLTEELRILQVEKHNVL--MTAGLVPILVIDVWEHAYY 172
>pdb|3LSU|A Chain A, Crystal Structure Of Sod2 From Saccharomyces Cerevisiae
pdb|3LSU|B Chain B, Crystal Structure Of Sod2 From Saccharomyces Cerevisiae
pdb|3LSU|C Chain C, Crystal Structure Of Sod2 From Saccharomyces Cerevisiae
pdb|3LSU|D Chain D, Crystal Structure Of Sod2 From Saccharomyces Cerevisiae
Length = 207
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 61/182 (33%), Gaps = 37/182 (20%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVI---ASYNKGDLLPAFNN-- 55
+S E H+ HH+ YV+ N T + + L D++ + N ++ N
Sbjct: 18 ISGQINELHYTXHHQTYVNGFN-----TAVDQFQELSDLLAXEPSPANARXMIAIQQNIX 72
Query: 56 --AAQAWNHDFFWXXXXXXXXXXXXXXXXXL---IERDFGSXXXXXXXXXXXXXTQFGSG 110
NH FW L I+ FGS GSG
Sbjct: 73 FHGGGFTNHCLFWENLAPESQGGGEPPTGALAXAIDEQFGSLDELIXLTNTXLAGVQGSG 132
Query: 111 WAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPN---AVNPLVWDYSPLLTIDVWEVN 167
WA++V L VV+T N PLV PL+ ID WE
Sbjct: 133 WAFIVXNL---------------SNGGXLDVVQTYNQDTVTGPLV----PLVAIDAWEHA 173
Query: 168 IY 169
Y
Sbjct: 174 YY 175
>pdb|1WB8|A Chain A, Iron Superoxide Dismutase (Fe-Sod) From The
Hyperthermophile Sulfolobus Solfataricus. 2.3 A
Resolution Structure Of Recombinant Protein With A
Covalently Modified Tyrosin In The Active Site.
pdb|1WB8|B Chain B, Iron Superoxide Dismutase (Fe-Sod) From The
Hyperthermophile Sulfolobus Solfataricus. 2.3 A
Resolution Structure Of Recombinant Protein With A
Covalently Modified Tyrosin In The Active Site
Length = 210
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 13/49 (26%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDL 49
+SKD ++ H+ HH+ YV+ N + + LE VV KGDL
Sbjct: 25 ISKDIIDVHYNGHHKGYVNGANSLL--------ERLEKVV-----KGDL 60
>pdb|4E4E|A Chain A, Crystal Structure Of The Y34f Mutant Of Saccharomyces
Cerevisiae Manganese Superoxide Dismutase
pdb|4E4E|B Chain B, Crystal Structure Of The Y34f Mutant Of Saccharomyces
Cerevisiae Manganese Superoxide Dismutase
pdb|4E4E|C Chain C, Crystal Structure Of The Y34f Mutant Of Saccharomyces
Cerevisiae Manganese Superoxide Dismutase
pdb|4E4E|D Chain D, Crystal Structure Of The Y34f Mutant Of Saccharomyces
Cerevisiae Manganese Superoxide Dismutase
Length = 207
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 61/182 (33%), Gaps = 37/182 (20%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVI---ASYNKGDLLPAFNN-- 55
+S E H+ HH+ +V+ N T + + L D++ + N ++ N
Sbjct: 18 ISGQINELHYTXHHQTFVNGFN-----TAVDQFQELSDLLAXEPSPANARXMIAIQQNIX 72
Query: 56 --AAQAWNHDFFWXXXXXXXXXXXXXXXXXL---IERDFGSXXXXXXXXXXXXXTQFGSG 110
NH FW L I+ FGS GSG
Sbjct: 73 FHGGGFTNHCLFWENLAPESQGGGEPPTGALAXAIDEQFGSLDELIXLTNTXLAGVQGSG 132
Query: 111 WAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPN---AVNPLVWDYSPLLTIDVWEVN 167
WA++V L VV+T N PLV PL+ ID WE
Sbjct: 133 WAFIVXNL---------------SNGGXLDVVQTYNQDTVTGPLV----PLVAIDAWEHA 173
Query: 168 IY 169
Y
Sbjct: 174 YY 175
>pdb|1B06|A Chain A, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|B Chain B, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|C Chain C, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|D Chain D, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|E Chain E, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|F Chain F, Superoxide Dismutase From Sulfolobus Acidocaldarius
Length = 210
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 1 MSKDTLEFHWGKHHRAYVDNLN 22
+SKD ++ H+ HH+ YV+ N
Sbjct: 25 ISKDIIDVHYNGHHKGYVNGAN 46
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,678,561
Number of Sequences: 62578
Number of extensions: 146635
Number of successful extensions: 533
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 308
Number of HSP's gapped (non-prelim): 87
length of query: 177
length of database: 14,973,337
effective HSP length: 92
effective length of query: 85
effective length of database: 9,216,161
effective search space: 783373685
effective search space used: 783373685
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)