Query 030435
Match_columns 177
No_of_seqs 166 out of 1194
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 13:41:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030435.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030435hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0605 SodA Superoxide dismut 100.0 3.5E-62 7.6E-67 391.9 16.7 154 1-174 20-176 (204)
2 PLN02685 iron superoxide dismu 100.0 6.6E-62 1.4E-66 409.8 18.2 171 1-173 63-233 (299)
3 PLN02184 superoxide dismutase 100.0 1.4E-61 3E-66 393.0 17.1 154 1-173 27-180 (212)
4 PRK10543 superoxide dismutase; 100.0 1.9E-61 4.2E-66 387.4 17.0 150 1-173 19-168 (193)
5 PLN02622 iron superoxide dismu 100.0 1.1E-59 2.3E-64 391.3 17.4 156 1-173 64-220 (261)
6 PRK10925 superoxide dismutase; 100.0 3.1E-59 6.6E-64 378.0 16.4 152 1-173 19-179 (206)
7 PTZ00078 Superoxide dismutase 100.0 4.6E-59 1E-63 373.7 16.9 150 1-173 14-164 (193)
8 PLN02471 superoxide dismutase 100.0 7.4E-56 1.6E-60 363.0 16.3 151 1-173 47-203 (231)
9 KOG0876 Manganese superoxide d 100.0 4.3E-56 9.3E-61 360.0 13.8 156 1-173 44-203 (234)
10 PF02777 Sod_Fe_C: Iron/mangan 100.0 2.1E-36 4.5E-41 221.3 8.8 84 75-174 1-84 (106)
11 PF00081 Sod_Fe_N: Iron/mangan 99.9 2.7E-23 6E-28 145.6 4.6 65 1-70 18-82 (82)
12 PF13348 Y_phosphatase3C: Tyro 61.9 9.6 0.00021 24.8 2.8 19 80-98 33-51 (68)
13 PF12826 HHH_2: Helix-hairpin- 39.6 19 0.00041 23.4 1.4 32 79-110 13-44 (64)
14 KOG0394 Ras-related GTPase [Ge 36.6 22 0.00048 28.9 1.6 21 85-105 93-113 (210)
15 PF08025 Antimicrobial_3: Spid 35.1 54 0.0012 18.9 2.6 26 79-104 7-32 (37)
16 PF05416 Peptidase_C37: Southa 31.4 32 0.0007 31.3 1.9 10 106-115 377-386 (535)
17 PF06502 Equine_IAV_S2: Equine 26.7 99 0.0021 20.5 3.1 14 105-118 2-15 (67)
18 PF12872 OST-HTH: OST-HTH/LOTU 26.2 55 0.0012 21.1 2.0 25 91-115 2-27 (74)
19 PF02868 Peptidase_M4_C: Therm 24.1 74 0.0016 24.7 2.6 56 55-110 84-148 (164)
20 TIGR02118 conserved hypothetic 24.1 68 0.0015 22.3 2.2 21 1-21 11-31 (100)
21 COG2331 Uncharacterized protei 21.8 29 0.00063 24.0 -0.1 23 94-118 42-64 (82)
No 1
>COG0605 SodA Superoxide dismutase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-62 Score=391.86 Aligned_cols=154 Identities=51% Similarity=0.916 Sum_probs=142.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCc--cCCCCChHHHHHHhhcCCCchhhhccchHhHhhHHHhhcccCC-CCCCC
Q 030435 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTE--LGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWESMKPG-GGGKP 77 (177)
Q Consensus 1 iS~~~~~~H~~khh~~yV~~LN~~~~~~~--~~~~~~~~~li~~~~~~~~~~~~fn~ag~~~NH~~fw~~L~p~-~~~~p 77 (177)
||++||++||+||||+||++||+++++.+ + +.++++++++.....+. .++|++||++||+|||++|+|. +++.|
T Consensus 20 is~et~~~Hh~kHH~~YV~~lN~~~~~~~~~~-~~~~~e~~~~~~~~~~~--~~~nn~~gh~NH~~fw~~l~p~~gg~~p 96 (204)
T COG0605 20 ISAETMELHHDKHHQTYVNNLNAALEGLTEEL-EDLSLEEIIKKLAGLPA--ALFNNAGGHWNHSLFWENLSPGGGGGKP 96 (204)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc-ccCCHHHHHHHHhcccH--HHHhcchhhhhHHHHHhhcCCCCCCCCC
Confidence 79999999999999999999999999843 5 88899988876644332 5899999999999999999995 78899
Q ss_pred cHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCccEEEEEEecCccccccccCCCCCCCCCCceeEEeecCCCCCCCCCCee
Q 030435 78 SGELLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVYKANNRADVANAVNPLPSEKDKSLLVVKTPNAVNPLVWDYSP 157 (177)
Q Consensus 78 ~~~L~~~I~~~FGS~e~fk~~f~~~a~~~~GsGW~WLv~~~~~~l~~~~~~~~~~~~~~~~L~i~~t~n~~~p~~~~~~P 157 (177)
+|+|+++|+++|||+|+||++|.++|.++|||||+|||+|+ .++|.|++|+||++|++.+.+|
T Consensus 97 ~g~L~~aI~~~FGS~d~fk~~f~~aa~~~fGsGWawLv~~~-----------------~~kL~i~~t~n~~~p~~~~~~P 159 (204)
T COG0605 97 TGELAAAINKDFGSFDKFKEEFTAAAASVFGSGWAWLVYDP-----------------DGKLEIVSTYNQDTPLMWGSVP 159 (204)
T ss_pred CHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCceEEEEECC-----------------CCcEEEEeccCCCCcccCCCCc
Confidence 99999999999999999999999999999999999999994 4699999999999999999999
Q ss_pred eEEeccchhhhhhhhcc
Q 030435 158 LLTIDVWEVNIYHCVLV 174 (177)
Q Consensus 158 lL~iDvWEHAYyld~~~ 174 (177)
||||||||||||+||+.
T Consensus 160 iL~lDvWEHAYYldY~N 176 (204)
T COG0605 160 LLGLDVWEHAYYLDYGN 176 (204)
T ss_pred eEEecchHHHHHHHhcc
Confidence 99999999999999986
No 2
>PLN02685 iron superoxide dismutase
Probab=100.00 E-value=6.6e-62 Score=409.83 Aligned_cols=171 Identities=84% Similarity=1.392 Sum_probs=160.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCChHHHHHHhhcCCCchhhhccchHhHhhHHHhhcccCCCCCCCcHH
Q 030435 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWESMKPGGGGKPSGE 80 (177)
Q Consensus 1 iS~~~~~~H~~khh~~yV~~LN~~~~~~~~~~~~~~~~li~~~~~~~~~~~~fn~ag~~~NH~~fw~~L~p~~~~~p~~~ 80 (177)
||++||++||+|||++||+|||++++++++ +++++++++..+..++....+||+|||++||+|||+||+|++++.|++.
T Consensus 63 IS~etmelHh~kHhq~YV~~LN~al~~t~l-~~~sl~eii~~~~~~~~~~~ifNnaggh~NH~fFWe~L~P~ggg~P~g~ 141 (299)
T PLN02685 63 MSRETLEYHWGKHHRAYVDNLNKQIVGTEL-DGMSLEDVVLITYNKGDMLPAFNNAAQAWNHEFFWESMKPGGGGKPSGE 141 (299)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHcCchh-hcCCHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHH
Confidence 799999999999999999999999998888 8899999987776666666799999999999999999999877889999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhcCCCccEEEEEEecCccccccccCCCCCCCCCCceeEEeecCCCCCCCCCCeeeEE
Q 030435 81 LLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVYKANNRADVANAVNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLT 160 (177)
Q Consensus 81 L~~~I~~~FGS~e~fk~~f~~~a~~~~GsGW~WLv~~~~~~l~~~~~~~~~~~~~~~~L~i~~t~n~~~p~~~~~~PlL~ 160 (177)
|+++|+++|||||+||++|+++|.++|||||+|||+++ ++++++++.||++...+++|.|++++||++|+..+.+||||
T Consensus 142 L~~aI~~~FGS~d~FK~~F~~aA~s~fGSGWvWLV~~~-~~~~~~~~~np~~~~~~~~L~i~~t~n~d~pl~~~~~PLL~ 220 (299)
T PLN02685 142 LLQLIERDFGSFERFVEEFKSAAATQFGSGWAWLAYKA-NRLDVGNAVNPCPSEEDKKLVVVKSPNAVNPLVWDYSPLLT 220 (299)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCCCCeEEEEEEcc-ccccccccccccccccCCceeEEeccCCCCCccCCCEeEEE
Confidence 99999999999999999999999999999999999974 67899999999987678899999999999999999999999
Q ss_pred eccchhhhhhhhc
Q 030435 161 IDVWEVNIYHCVL 173 (177)
Q Consensus 161 iDvWEHAYyld~~ 173 (177)
|||||||||+||+
T Consensus 221 iDVWEHAYYlDY~ 233 (299)
T PLN02685 221 IDVWEHAYYLDFQ 233 (299)
T ss_pred EecchhhhHHHhc
Confidence 9999999999997
No 3
>PLN02184 superoxide dismutase [Fe]
Probab=100.00 E-value=1.4e-61 Score=392.96 Aligned_cols=154 Identities=75% Similarity=1.274 Sum_probs=144.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCChHHHHHHhhcCCCchhhhccchHhHhhHHHhhcccCCCCCCCcHH
Q 030435 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWESMKPGGGGKPSGE 80 (177)
Q Consensus 1 iS~~~~~~H~~khh~~yV~~LN~~~~~~~~~~~~~~~~li~~~~~~~~~~~~fn~ag~~~NH~~fw~~L~p~~~~~p~~~ 80 (177)
||++||++||+|||++||++||++++++++ +++++.+|+......++...+||+|||++||+|||+||+|++++.|++.
T Consensus 27 iS~~t~~~Hh~kHh~~YV~~LN~~l~~~~~-~~~~l~~ii~~~~~~~~~~~ifnnagg~~NH~~fw~~L~p~g~~~P~g~ 105 (212)
T PLN02184 27 MSKQTLEFHWGKHHRAYVDNLKKQVLGTEL-EGKPLEHIIHSTYNNGDLLPAFNNAAQAWNHEFFWESMKPGGGGKPSGE 105 (212)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhcCchh-hcCCHHHHHHHhcccchHHHHHHhHHHHHHHHHHHHhcCCCCCCCCCHH
Confidence 799999999999999999999999998888 7889999987666655556799999999999999999999877789999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhcCCCccEEEEEEecCccccccccCCCCCCCCCCceeEEeecCCCCCCCCCCeeeEE
Q 030435 81 LLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVYKANNRADVANAVNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLT 160 (177)
Q Consensus 81 L~~~I~~~FGS~e~fk~~f~~~a~~~~GsGW~WLv~~~~~~l~~~~~~~~~~~~~~~~L~i~~t~n~~~p~~~~~~PlL~ 160 (177)
|+++|+++|||+|+||++|.++|.++|||||+|||+|+ ++|.|++|+|+++|++.+.+||||
T Consensus 106 L~~~I~~~FGS~d~fk~~F~~~a~~~fGsGW~WLv~~~------------------~~L~i~~t~n~~~P~~~~~~PlL~ 167 (212)
T PLN02184 106 LLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAYSN------------------EKLKVVKTPNAVNPLVLGSFPLLT 167 (212)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCCeEEEEEEEC------------------CEEEEEeecCCCCCccCCCeeEEE
Confidence 99999999999999999999999999999999999982 589999999999999999999999
Q ss_pred eccchhhhhhhhc
Q 030435 161 IDVWEVNIYHCVL 173 (177)
Q Consensus 161 iDvWEHAYyld~~ 173 (177)
|||||||||+||+
T Consensus 168 iDvWEHAYyldY~ 180 (212)
T PLN02184 168 IDVWEHAYYLDFQ 180 (212)
T ss_pred EecchhhhHHHhc
Confidence 9999999999997
No 4
>PRK10543 superoxide dismutase; Provisional
Probab=100.00 E-value=1.9e-61 Score=387.45 Aligned_cols=150 Identities=51% Similarity=0.910 Sum_probs=140.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCChHHHHHHhhcCCCchhhhccchHhHhhHHHhhcccCCCCCCCcHH
Q 030435 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWESMKPGGGGKPSGE 80 (177)
Q Consensus 1 iS~~~~~~H~~khh~~yV~~LN~~~~~~~~~~~~~~~~li~~~~~~~~~~~~fn~ag~~~NH~~fw~~L~p~~~~~p~~~ 80 (177)
||++||++||+|||++||++||++++++++ +++++.+++... ...+||+|||++||+|||++|+|++++.|+++
T Consensus 19 is~~~~~~H~~kHh~~YV~~LN~~~~~~~~-~~~~l~~ii~~~-----~~~ifnna~g~~NH~lfw~~L~p~~~~~p~~~ 92 (193)
T PRK10543 19 ISAETLEYHYGKHHQTYVTNLNNLIKGTAF-EGKSLEEIVRSS-----EGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGK 92 (193)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhcchh-hcCCHHHHHHhh-----HHHHHHHHHHHHHHHHHHHhcCCCCCCCCChH
Confidence 799999999999999999999999998888 788999988532 24699999999999999999999877789999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhcCCCccEEEEEEecCccccccccCCCCCCCCCCceeEEeecCCCCCCCCCCeeeEE
Q 030435 81 LLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVYKANNRADVANAVNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLT 160 (177)
Q Consensus 81 L~~~I~~~FGS~e~fk~~f~~~a~~~~GsGW~WLv~~~~~~l~~~~~~~~~~~~~~~~L~i~~t~n~~~p~~~~~~PlL~ 160 (177)
|+++|+++|||+|+||++|+++|.++|||||+|||+|+ +++|.|++|.||++|++.+.+||||
T Consensus 93 L~~~I~~~FGS~e~fk~~f~~~a~~~fGsGW~WLv~~~-----------------~~~L~I~~t~n~~~p~~~~~~PlL~ 155 (193)
T PRK10543 93 VAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNA-----------------DGKLAIVSTSNAGTPLTTDATPLLT 155 (193)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCCCCeEEEEEECC-----------------CCCEEEEeccCCCCCcCCCCEeEEE
Confidence 99999999999999999999999999999999999983 5799999999999999988999999
Q ss_pred eccchhhhhhhhc
Q 030435 161 IDVWEVNIYHCVL 173 (177)
Q Consensus 161 iDvWEHAYyld~~ 173 (177)
|||||||||+||+
T Consensus 156 lDvWEHAYyldY~ 168 (193)
T PRK10543 156 VDVWEHAYYIDYR 168 (193)
T ss_pred EecchhhhHHHhc
Confidence 9999999999997
No 5
>PLN02622 iron superoxide dismutase
Probab=100.00 E-value=1.1e-59 Score=391.33 Aligned_cols=156 Identities=56% Similarity=1.049 Sum_probs=144.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCc-cCCCCChHHHHHHhhcCCCchhhhccchHhHhhHHHhhcccCCCCCCCcH
Q 030435 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTE-LGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWESMKPGGGGKPSG 79 (177)
Q Consensus 1 iS~~~~~~H~~khh~~yV~~LN~~~~~~~-~~~~~~~~~li~~~~~~~~~~~~fn~ag~~~NH~~fw~~L~p~~~~~p~~ 79 (177)
||++||++||+|||++||++||+++++++ + ++.++.+++......+....+||+|||++||+|||++|+|++++.|++
T Consensus 64 iS~~tl~~H~~kHh~~YV~~LN~~l~~~~~~-~~~~l~~li~~~~~~~~~~~vfnna~g~~NH~~Fw~~L~P~g~~~P~g 142 (261)
T PLN02622 64 MSRRTLEVHWGEHHRGYVEGLNKQLAKDDIL-YGYTMDELVKVTYNNGNPLPEFNNAAQVWNHDFFWESMQPGGGDMPEL 142 (261)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhCchhh-hcCCHHHHHHHhhccchhHHHHHHHHhHHHHHHHHHccCCCCCCCCCH
Confidence 79999999999999999999999998864 4 678999998766555556679999999999999999999987778999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhcCCCccEEEEEEecCccccccccCCCCCCCCCCceeEEeecCCCCCCCCCCeeeE
Q 030435 80 ELLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVYKANNRADVANAVNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLL 159 (177)
Q Consensus 80 ~L~~~I~~~FGS~e~fk~~f~~~a~~~~GsGW~WLv~~~~~~l~~~~~~~~~~~~~~~~L~i~~t~n~~~p~~~~~~PlL 159 (177)
.|+++|+++|||+|+||++|+++|.++|||||+|||+|+ .+++|.|++|.||++|++.+.+|||
T Consensus 143 ~L~~aI~~~FGS~d~Fk~~F~~aA~s~fGSGW~WLv~d~----------------~~g~L~I~~t~N~~~Pl~~~~~PLL 206 (261)
T PLN02622 143 GVLEQIEKDFGSFTNFREKFTEAALTLFGSGWVWLVLKR----------------EERRLEVVKTSNAINPLVWDDIPII 206 (261)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcCCceEEEEEEeC----------------CCCeEEEEecCCCCCCccCCCEeEE
Confidence 999999999999999999999999999999999999994 4678999999999999999889999
Q ss_pred Eeccchhhhhhhhc
Q 030435 160 TIDVWEVNIYHCVL 173 (177)
Q Consensus 160 ~iDvWEHAYyld~~ 173 (177)
||||||||||+||+
T Consensus 207 ~lDvWEHAYYlDY~ 220 (261)
T PLN02622 207 CLDVWEHAYYLDYK 220 (261)
T ss_pred EEechhhhhHHhhc
Confidence 99999999999997
No 6
>PRK10925 superoxide dismutase; Provisional
Probab=100.00 E-value=3.1e-59 Score=377.99 Aligned_cols=152 Identities=41% Similarity=0.659 Sum_probs=136.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCC-ccCCCCChHHHHHHhhcCCC--chhhhccchHhHhhHHHhhcccCCCCCCC
Q 030435 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGT-ELGDGKSLEDVVIASYNKGD--LLPAFNNAAQAWNHDFFWESMKPGGGGKP 77 (177)
Q Consensus 1 iS~~~~~~H~~khh~~yV~~LN~~~~~~-~~~~~~~~~~li~~~~~~~~--~~~~fn~ag~~~NH~~fw~~L~p~~~~~p 77 (177)
||++||++||+|||++||++||++++++ ++ +++++++++......++ +..+||+|||++||+|||++|+|+ +.|
T Consensus 19 is~~t~~~H~~kHh~~YV~~LN~~~~~~~~~-~~~~l~~ii~~~~~~~~~~~~~i~nna~g~~NH~~fw~~L~P~--~~p 95 (206)
T PRK10925 19 FDKQTMEIHHTKHHQTYVNNANAALESLPEF-ANLPVEELITKLDQLPADKKTVLRNNAGGHANHSLFWKGLKKG--TTL 95 (206)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhccHHh-hcCCHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhccCCC--CCC
Confidence 7999999999999999999999999886 45 67899999876544333 345889999999999999999994 479
Q ss_pred cHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCccEEEEEEecCccccccccCCCCCCCCCCceeEEeecCCCCCCCC----
Q 030435 78 SGELLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVYKANNRADVANAVNPLPSEKDKSLLVVKTPNAVNPLVW---- 153 (177)
Q Consensus 78 ~~~L~~~I~~~FGS~e~fk~~f~~~a~~~~GsGW~WLv~~~~~~l~~~~~~~~~~~~~~~~L~i~~t~n~~~p~~~---- 153 (177)
++.|+++|+++|||||+||++|.++|.++|||||+|||++ +++|.|++|+||++|++.
T Consensus 96 ~g~L~~~I~~~FGS~d~fk~~f~~~a~~~fGSGW~wLv~~------------------~~~L~i~~t~N~~~p~~~~~~~ 157 (206)
T PRK10925 96 QGDLKAAIERDFGSVDNFKAEFEKAAATRFGSGWAWLVLK------------------GDKLAVVSTANQDSPLMGEAIS 157 (206)
T ss_pred CHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeeEEEEEe------------------CCEEEEEeccCCCCCccccccc
Confidence 9999999999999999999999999999999999999997 358999999999999874
Q ss_pred --CCeeeEEeccchhhhhhhhc
Q 030435 154 --DYSPLLTIDVWEVNIYHCVL 173 (177)
Q Consensus 154 --~~~PlL~iDvWEHAYyld~~ 173 (177)
+.+|||||||||||||+||+
T Consensus 158 ~~~~~PlL~iDvWEHAYyldY~ 179 (206)
T PRK10925 158 GASGFPILGLDVWEHAYYLKFQ 179 (206)
T ss_pred cCCCceeEEEechHHHhHHHHc
Confidence 34899999999999999997
No 7
>PTZ00078 Superoxide dismutase [Fe]; Provisional
Probab=100.00 E-value=4.6e-59 Score=373.67 Aligned_cols=150 Identities=47% Similarity=0.870 Sum_probs=138.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCChHHHHHHhhcCCCchhhhccchHhHhhHHHhhcccCCCCCCCcHH
Q 030435 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWESMKPGGGGKPSGE 80 (177)
Q Consensus 1 iS~~~~~~H~~khh~~yV~~LN~~~~~~~~~~~~~~~~li~~~~~~~~~~~~fn~ag~~~NH~~fw~~L~p~~~~~p~~~ 80 (177)
||++||++||+|||++||++||++++++++ +.+++.+++... ...+||+|||++||+|||++|+|++++.|+++
T Consensus 14 iS~~~l~~H~~~hh~~YV~~lN~~~~~~~~-~~~~~~~ii~~~-----~~~~~n~a~g~~NH~lfw~~L~p~g~~~p~g~ 87 (193)
T PTZ00078 14 LSEETLKFHYSKHHAGYVNKLNGLIKGTPL-ENKTLEELIKEY-----SGAVFNNAAQIWNHNFYWLSMGPNGGGEPTGE 87 (193)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hcCCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhcCCCCCCCCChH
Confidence 799999999999999999999999998877 778999988643 24699999999999999999999877789999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhcCCCccEEEEEEecCccccccccCCCCCCCCCCceeEEeecCCCCCCCCC-CeeeE
Q 030435 81 LLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVYKANNRADVANAVNPLPSEKDKSLLVVKTPNAVNPLVWD-YSPLL 159 (177)
Q Consensus 81 L~~~I~~~FGS~e~fk~~f~~~a~~~~GsGW~WLv~~~~~~l~~~~~~~~~~~~~~~~L~i~~t~n~~~p~~~~-~~PlL 159 (177)
|+++|+++|||+|+||++|.++|.++|||||||||++ .+++|.|++|+|+++|++.+ .+|||
T Consensus 88 L~~~I~~~FGS~d~fk~~f~~~a~~~fGsGWvwLv~~-----------------~~~~L~i~~t~n~~~p~~~~~~~PlL 150 (193)
T PTZ00078 88 IKEKIDEKFGSFDNFKNEFSNVLSGHFGSGWGWLVLK-----------------NDGKLEIVQTHDAGNPIKDNTGKPLL 150 (193)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCCCCeEEEEEEC-----------------CCCcEEEEeccCCCCCccCCCCceEE
Confidence 9999999999999999999999999999999999975 36899999999999999864 68999
Q ss_pred Eeccchhhhhhhhc
Q 030435 160 TIDVWEVNIYHCVL 173 (177)
Q Consensus 160 ~iDvWEHAYyld~~ 173 (177)
||||||||||+||+
T Consensus 151 ~lDvWEHAYyldY~ 164 (193)
T PTZ00078 151 TCDIWEHAYYIDYR 164 (193)
T ss_pred EeccchhhhHHHHc
Confidence 99999999999997
No 8
>PLN02471 superoxide dismutase [Mn]
Probab=100.00 E-value=7.4e-56 Score=363.01 Aligned_cols=151 Identities=34% Similarity=0.544 Sum_probs=128.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCcc-CCCCChHHHHHHhhcCCCchhhhccchHhHhhHHHhhcccCC--CCCC-
Q 030435 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTEL-GDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWESMKPG--GGGK- 76 (177)
Q Consensus 1 iS~~~~~~H~~khh~~yV~~LN~~~~~~~~-~~~~~~~~li~~~~~~~~~~~~fn~ag~~~NH~~fw~~L~p~--~~~~- 76 (177)
||++||++||+|||++||+|||+++++.+. .+..++.+++.. ...++|++||++||+|||++|+|. +++.
T Consensus 47 iS~~tl~~Hh~kHh~~YV~~LN~l~~~l~~~~~~~~~~~i~~~------~~~~~~n~gg~~NH~~fw~~L~P~~~gg~~~ 120 (231)
T PLN02471 47 ISGEIMQLHHQKHHQTYVTNYNKALEQLDQAVEKGDASAVVKL------QSAIKFNGGGHVNHSIFWKNLAPVSEGGGEP 120 (231)
T ss_pred cCHHHHHHHHhhhHHHHHHHHHHHHHHhHhhcccCCHHHHHhh------hhhhhhHHHHHHhHHHHHhccCCCCCCCCCC
Confidence 799999999999999999999999976421 133455554421 134788899999999999999994 3334
Q ss_pred CcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCccEEEEEEecCccccccccCCCCCCCCCCceeEEeecCCCCCCCCC--
Q 030435 77 PSGELLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVYKANNRADVANAVNPLPSEKDKSLLVVKTPNAVNPLVWD-- 154 (177)
Q Consensus 77 p~~~L~~~I~~~FGS~e~fk~~f~~~a~~~~GsGW~WLv~~~~~~l~~~~~~~~~~~~~~~~L~i~~t~n~~~p~~~~-- 154 (177)
|++.|+++|+++|||+|+||++|.++|.++|||||+|||+|+ .+++|.|++|+|||+|+..+
T Consensus 121 p~g~L~~~I~~~FGS~d~fk~~f~~~A~~~fGSGW~WLv~d~----------------~~~~L~i~~t~n~d~~~~~~~~ 184 (231)
T PLN02471 121 PHGSLGWAIDEHFGSLEALVKKMSAEGAAVQGSGWVWLGLDK----------------ELKKLVVETTANQDPLVTKGPS 184 (231)
T ss_pred CcHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCeEEEEEEeC----------------CCCeEEEEeecCCCCCcccCCC
Confidence 689999999999999999999999999999999999999994 46899999999999886654
Q ss_pred CeeeEEeccchhhhhhhhc
Q 030435 155 YSPLLTIDVWEVNIYHCVL 173 (177)
Q Consensus 155 ~~PlL~iDvWEHAYyld~~ 173 (177)
.+|||||||||||||+||+
T Consensus 185 ~~PiL~iDvWEHAYylDY~ 203 (231)
T PLN02471 185 LVPLLGIDVWEHAYYLQYK 203 (231)
T ss_pred CceEEEeechhhHhHHHhc
Confidence 5899999999999999997
No 9
>KOG0876 consensus Manganese superoxide dismutase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-56 Score=359.96 Aligned_cols=156 Identities=47% Similarity=0.869 Sum_probs=141.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCChHHHHHHhhcCCCchhhhccchHhHhhHHHhhcccCCCCCCCcHH
Q 030435 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWESMKPGGGGKPSGE 80 (177)
Q Consensus 1 iS~~~~~~H~~khh~~yV~~LN~~~~~~~~~~~~~~~~li~~~~~~~~~~~~fn~ag~~~NH~~fw~~L~p~~~~~p~~~ 80 (177)
||+++|++||+||||+||++||+++++.+...++...+++. ++..++....||+||+++||+|||++|.|++++.|.+.
T Consensus 44 ~s~e~~~lh~~kHh~~yV~~ln~~~~~~~~~~~~~~~~~~~-t~~~~~~a~~Fn~~~~~~Nh~fFw~~l~p~gg~~p~~~ 122 (234)
T KOG0876|consen 44 ISAEIMELHWDKHHRTYVNNLNKAVEGLSELYSKLFVELSL-TAIAPQPAPKFNGAGHIYNHSFFWENLAPPGGGKPEGE 122 (234)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhhhH-hccChhhhhhcCCccccccchhhhhhccCCCCCCCchH
Confidence 79999999999999999999999999876425666666555 67778888999999999999999999999888788776
Q ss_pred -HHHHHHhhcCCHHHHHHHHHHHHhcCCCccEEEEEEecCccccccccCCCCCCCCCCceeEEeecCCCCCCCCC---Ce
Q 030435 81 -LLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVYKANNRADVANAVNPLPSEKDKSLLVVKTPNAVNPLVWD---YS 156 (177)
Q Consensus 81 -L~~~I~~~FGS~e~fk~~f~~~a~~~~GsGW~WLv~~~~~~l~~~~~~~~~~~~~~~~L~i~~t~n~~~p~~~~---~~ 156 (177)
|.++|+++|||+|+|+++|.+++.++|||||+|||+++ ..++|.|++|+||.+|+.++ .+
T Consensus 123 ~L~~aI~~~FGS~ee~~k~~~~~~~~v~GsGW~WLv~~~----------------~~~kL~i~~T~Na~~P~~~~t~~~v 186 (234)
T KOG0876|consen 123 ALLKAIDSSFGSLEEFVKELNAAAAAVFGSGWLWLVYNK----------------ELKKLFILTTYNAGDPLVWTTGQLV 186 (234)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHhhcCCceEEEEEcC----------------CCCeEEEEecCCCCCCeeccCCCcc
Confidence 99999999999999999999999999999999999994 24799999999999999986 79
Q ss_pred eeEEeccchhhhhhhhc
Q 030435 157 PLLTIDVWEVNIYHCVL 173 (177)
Q Consensus 157 PlL~iDvWEHAYyld~~ 173 (177)
|||||||||||||+|||
T Consensus 187 PLl~IDvWeHAYyldY~ 203 (234)
T KOG0876|consen 187 PLLGIDVWEHAYYLDYG 203 (234)
T ss_pred ceEEEecchhHhHHHhc
Confidence 99999999999999998
No 10
>PF02777 Sod_Fe_C: Iron/manganese superoxide dismutases, C-terminal domain Note: SCOP classifies the two domains separately.; InterPro: IPR019832 Superoxide dismutases (SODs) (1.15.1.1 from EC) catalyse the conversion of superoxide radicals to molecular oxygen. Their function is to destroy the radicals that are normally produced within cells and are toxic to biological systems. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one [, , ]. This family includes both single metal-binding SODs and cambialistic SOD, which can bind either Mn or Fe. Fe/MnSODs are ubiquitous enzymes that are responsible for the majority of SOD activity in prokaryotes, fungi, blue-green algae and mitochondria. Fe/MnSODs are found as homodimers or homotetramers. The structure of Fe/MnSODs can be divided into two domains, an alpha N-terminal domain and an alpha/beta C-terminal domain, connected by a loop. The structure of the N-terminal domain consists of a two helices in an antiparallel hairpin, with a left-handed twist []. The structure of the C-terminal domain is of the alpha/beta type, and consists of a three-stranded antiparallel beta-sheet in the order 213, along with four helices in the arrangement alpha/beta(2)/alpha/beta/alpha(2) []. This entry represents the C-terminal domain of Manganese/iron superoxide dismutase. ; GO: 0004784 superoxide dismutase activity, 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 1KKC_Y 2GOJ_B 1UES_C 1UER_C 1QNN_A 1MY6_A 1MA1_F 1P7G_Q 3EVK_D 2GPC_A ....
Probab=100.00 E-value=2.1e-36 Score=221.28 Aligned_cols=84 Identities=52% Similarity=0.952 Sum_probs=78.4
Q ss_pred CCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCccEEEEEEecCccccccccCCCCCCCCCCceeEEeecCCCCCCCCC
Q 030435 75 GKPSGELLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVYKANNRADVANAVNPLPSEKDKSLLVVKTPNAVNPLVWD 154 (177)
Q Consensus 75 ~~p~~~L~~~I~~~FGS~e~fk~~f~~~a~~~~GsGW~WLv~~~~~~l~~~~~~~~~~~~~~~~L~i~~t~n~~~p~~~~ 154 (177)
+.|+++|+++|+++|||+|+||++|.++|.++|||||+|||+|+ .+++|.++++.|+++|+..+
T Consensus 1 g~P~g~l~~~I~~~FGS~d~fk~~f~~~a~~~~GsGW~wLv~d~----------------~~~~L~i~~t~n~~~p~~~~ 64 (106)
T PF02777_consen 1 GKPSGKLKKAIEEDFGSFDNFKAEFTAAALSVFGSGWVWLVYDP----------------SDGKLSIISTPNHDTPIIWG 64 (106)
T ss_dssp SS-THHHHHHHHHHHSSHHHHHHHHHHHHHHSSSSEEEEEEEET----------------TTTEEEEEEEETTTBGGGGT
T ss_pred CCCCHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCeeeeeecc----------------ccceeeeeeecccccccchh
Confidence 47999999999999999999999999999999999999999995 57899999999999999999
Q ss_pred CeeeEEeccchhhhhhhhcc
Q 030435 155 YSPLLTIDVWEVNIYHCVLV 174 (177)
Q Consensus 155 ~~PlL~iDvWEHAYyld~~~ 174 (177)
.+|||||||||||||+||+.
T Consensus 65 ~~Pll~iD~weHaY~~dy~~ 84 (106)
T PF02777_consen 65 LIPLLCIDVWEHAYYLDYGN 84 (106)
T ss_dssp EEEEEEEE-SGGGTHHHHTT
T ss_pred hccchhhhhhHHHHHHHHhc
Confidence 99999999999999999984
No 11
>PF00081 Sod_Fe_N: Iron/manganese superoxide dismutases, alpha-hairpin domain Note: SCOP classifies the two domains separately.; InterPro: IPR019831 Superoxide dismutases (SODs) (1.15.1.1 from EC) catalyse the conversion of superoxide radicals to molecular oxygen. Their function is to destroy the radicals that are normally produced within cells and are toxic to biological systems. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one [, , ]. This family includes both single metal-binding SODs and cambialistic SOD, which can bind either Mn or Fe. Fe/MnSODs are ubiquitous enzymes that are responsible for the majority of SOD activity in prokaryotes, fungi, blue-green algae and mitochondria. Fe/MnSODs are found as homodimers or homotetramers. The structure of Fe/MnSODs can be divided into two domains, an alpha N-terminal domain and an alpha/beta C-terminal domain, connected by a loop. The structure of the N-terminal domain consists of a two helices in an antiparallel hairpin, with a left-handed twist []. The structure of the C-terminal domain is of the alpha/beta type, and consists of a three-stranded antiparallel beta-sheet in the order 213, along with four helices in the arrangement alpha/beta(2)/alpha/beta/alpha(2) []. This entry represents the N-terminal domain of Manganese/iron superoxide dismutase. ; GO: 0004784 superoxide dismutase activity, 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 3TQJ_A 1MY6_A 1BT8_A 1BSM_B 1AR5_A 1BS3_A 1AR4_A 1AVM_A 3DC6_C 1ZSP_B ....
Probab=99.88 E-value=2.7e-23 Score=145.56 Aligned_cols=65 Identities=46% Similarity=0.803 Sum_probs=57.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCChHHHHHHhhcCCCchhhhccchHhHhhHHHhhccc
Q 030435 1 MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWESMK 70 (177)
Q Consensus 1 iS~~~~~~H~~khh~~yV~~LN~~~~~~~~~~~~~~~~li~~~~~~~~~~~~fn~ag~~~NH~~fw~~L~ 70 (177)
||++||++||+|||++||++||++++++++ +++++++++.. ..+..+||+|||++||+|||++|+
T Consensus 18 is~~t~~~H~~kHh~~YV~~lN~~~~~~~~-~~~~~~~~~~~----~~~~~~~nn~gg~~NH~~fw~~ls 82 (82)
T PF00081_consen 18 ISEETMELHHDKHHQGYVNNLNKALEKTEL-EGKSLEEIISN----ALRAALRNNAGGHYNHSFFWENLS 82 (82)
T ss_dssp S-HHHHHHHHHTHHHHHHHHHHHHHTTCHH-HTSTHHHHHHH----HHHHHHHHHHHHHHHHHHHHHTB-
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcccc-ccccchhhhhh----hhhHHHHHHcchhhhHHHHHHHcC
Confidence 799999999999999999999999999988 88999999865 235689999999999999999995
No 12
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=61.87 E-value=9.6 Score=24.77 Aligned_cols=19 Identities=37% Similarity=0.702 Sum_probs=15.8
Q ss_pred HHHHHHHhhcCCHHHHHHH
Q 030435 80 ELLGLIERDFGSFEKFLEE 98 (177)
Q Consensus 80 ~L~~~I~~~FGS~e~fk~~ 98 (177)
...+.|++.|||+++|..+
T Consensus 33 ~~l~~i~~~yGs~e~Yl~~ 51 (68)
T PF13348_consen 33 AALDAIDERYGSVENYLRE 51 (68)
T ss_dssp HHHHHHHHHHSSHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHH
Confidence 3558999999999999854
No 13
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B.
Probab=39.60 E-value=19 Score=23.39 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=20.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCcc
Q 030435 79 GELLGLIERDFGSFEKFLEEFKAAAATQFGSG 110 (177)
Q Consensus 79 ~~L~~~I~~~FGS~e~fk~~f~~~a~~~~GsG 110 (177)
..-++.|-+.|||+|++++.=.+.-..+-|-|
T Consensus 13 ~~~ak~L~~~f~sl~~l~~a~~e~L~~i~gIG 44 (64)
T PF12826_consen 13 EKTAKLLAKHFGSLEALMNASVEELSAIPGIG 44 (64)
T ss_dssp HHHHHHHHHCCSCHHHHCC--HHHHCTSTT--
T ss_pred HHHHHHHHHHcCCHHHHHHcCHHHHhccCCcC
Confidence 45678889999999999876555544555544
No 14
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=36.60 E-value=22 Score=28.88 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=18.4
Q ss_pred HHhhcCCHHHHHHHHHHHHhc
Q 030435 85 IERDFGSFEKFLEEFKAAAAT 105 (177)
Q Consensus 85 I~~~FGS~e~fk~~f~~~a~~ 105 (177)
+-++|+++++|+++|...|.-
T Consensus 93 ~~~Sfe~L~~Wr~EFl~qa~~ 113 (210)
T KOG0394|consen 93 NPKSFENLENWRKEFLIQASP 113 (210)
T ss_pred ChhhhccHHHHHHHHHHhcCC
Confidence 447999999999999999873
No 15
>PF08025 Antimicrobial_3: Spider antimicrobial peptide; InterPro: IPR012522 This family includes antimicrobial peptides isolated from the crude venom of the wolf spider Oxyopes kitabensis (Wolf spider). These peptides, known as oxyopinins, are the largest linear cationic amphipathic peptides chemically characterised and exhibit disrupting activities towards biological membranes [].; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0005576 extracellular region
Probab=35.12 E-value=54 Score=18.90 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=22.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHh
Q 030435 79 GELLGLIERDFGSFEKFLEEFKAAAA 104 (177)
Q Consensus 79 ~~L~~~I~~~FGS~e~fk~~f~~~a~ 104 (177)
++++.+|.+-|-.+-.-+++|++++.
T Consensus 7 ~kilrsiak~fkgvgk~rkqfk~asd 32 (37)
T PF08025_consen 7 SKILRSIAKFFKGVGKVRKQFKEASD 32 (37)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 56788999999999999999998753
No 16
>PF05416 Peptidase_C37: Southampton virus-type processing peptidase; InterPro: IPR001665 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C37, (clan PA(C)). The type example is calicivirin from Southampton virus, an endopeptidase that cleaves the polyprotein at sites N-terminal to itself, liberating the polyprotein helicase. Southampton virus is a positive-stranded ssRNA virus belonging to the Caliciviruses, which are viruses that cause gastroenteritis. The calicivirus genome contains two open reading frames, ORF1 and ORF2. ORF1 encodes a non-structural polypeptide, which has RNA helicase, cysteine protease and RNA polymerase activity []. The regions of the polyprotein in which these activities lie are similar to proteins produced by the picornaviruses []. ORF2 encodes a structural, capsid protein. Two different families of caliciviruses can be distinguished on the basis of sequence similarity, namely the Norwalk-like viruses or small round structured viruses (SRSVs), and those classed as non-SRSVs.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 2FYQ_A 2FYR_A 1WQS_D 4ASH_A 2IPH_B.
Probab=31.39 E-value=32 Score=31.31 Aligned_cols=10 Identities=60% Similarity=1.494 Sum_probs=8.9
Q ss_pred CCCccEEEEE
Q 030435 106 QFGSGWAWLV 115 (177)
Q Consensus 106 ~~GsGW~WLv 115 (177)
.|||||.+-|
T Consensus 377 ~fGsGWGfWV 386 (535)
T PF05416_consen 377 KFGSGWGFWV 386 (535)
T ss_dssp EETTEEEEES
T ss_pred ecCCceeeee
Confidence 4999999988
No 17
>PF06502 Equine_IAV_S2: Equine infectious anaemia virus S2 protein; InterPro: IPR009480 This family consists of several equine infectious anaemia virus S2 proteins. The function of this family is unknown.
Probab=26.73 E-value=99 Score=20.49 Aligned_cols=14 Identities=29% Similarity=0.658 Sum_probs=12.0
Q ss_pred cCCCccEEEEEEec
Q 030435 105 TQFGSGWAWLVYKA 118 (177)
Q Consensus 105 ~~~GsGW~WLv~~~ 118 (177)
++||+|=+|-+..+
T Consensus 2 glfg~GVTWSa~HS 15 (67)
T PF06502_consen 2 GLFGKGVTWSASHS 15 (67)
T ss_pred ccccCcceeeeccc
Confidence 67999999998775
No 18
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=26.17 E-value=55 Score=21.13 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=15.2
Q ss_pred CHHHHHHHHHHHHhcCCC-ccEEEEE
Q 030435 91 SFEKFLEEFKAAAATQFG-SGWAWLV 115 (177)
Q Consensus 91 S~e~fk~~f~~~a~~~~G-sGW~WLv 115 (177)
|.+.+++.+.+.-.+..+ .||++|.
T Consensus 2 ~~~~~~~~l~~ll~~~~~~~g~v~ls 27 (74)
T PF12872_consen 2 SLEELKKLLRELLESQKGEDGWVSLS 27 (74)
T ss_dssp --HHHHHHHHHHHHHTCTTTSSEEHH
T ss_pred hHHHHHHHHHHHHHhCcCCCceEEHH
Confidence 456667777766645555 5788874
No 19
>PF02868 Peptidase_M4_C: Thermolysin metallopeptidase, alpha-helical domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR001570 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in the C-terminal of the peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1U4G_A 1EZM_A 3DBK_A 1LND_E 3T2I_E 3FOR_A 3FGD_A ....
Probab=24.14 E-value=74 Score=24.70 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=34.1
Q ss_pred cchHhHhhHHHhhccc----CCCCC-CCcHH-HHHHHHhhcC---CHHHHHHHHHHHHhcCCCcc
Q 030435 55 NAAQAWNHDFFWESMK----PGGGG-KPSGE-LLGLIERDFG---SFEKFLEEFKAAAATQFGSG 110 (177)
Q Consensus 55 ~ag~~~NH~~fw~~L~----p~~~~-~p~~~-L~~~I~~~FG---S~e~fk~~f~~~a~~~~GsG 110 (177)
..|++.||-||.-.-. -.+-+ +...+ ...++...+. +|..|+....++|..++|.+
T Consensus 84 ~nSGI~N~aFYlla~~~~~~~~g~g~~ka~~I~y~A~~~~l~~~s~F~~~~~~~i~aA~~l~g~~ 148 (164)
T PF02868_consen 84 INSGIPNKAFYLLATGNGYTVGGIGWEKAAKIWYRALTNYLTPNSTFSDARRATIQAAKDLYGAN 148 (164)
T ss_dssp HHTHHHHHHHHHHHHCTTEEECTCTHHHHHHHHHHHHHHTS-TT-BHHHHHHHHHHHHHHHC-TT
T ss_pred ccccHHHHHHHHHHhccCcccCCccHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 4567899999976554 01111 11122 3355555443 48999999999999888853
No 20
>TIGR02118 conserved hypothetical protein. This model represents a small family of proteins of unknown function, each about 105 amino acids in length. Conserved sites in the multiple alignment include a pair of aromatic residues, a histidine, and an aspartate.
Probab=24.07 E-value=68 Score=22.29 Aligned_cols=21 Identities=14% Similarity=0.346 Sum_probs=18.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 030435 1 MSKDTLEFHWGKHHRAYVDNL 21 (177)
Q Consensus 1 iS~~~~~~H~~khh~~yV~~L 21 (177)
+|.++++.||..+|.-.+.++
T Consensus 11 ~~~e~F~~yy~~~H~pL~~~~ 31 (100)
T TIGR02118 11 EDGAAFDHHYRDTHVPLAQKL 31 (100)
T ss_pred CCHHHHHHHHHhccHHHHHhC
Confidence 478999999999999988875
No 21
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.80 E-value=29 Score=23.98 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhcCCCccEEEEEEec
Q 030435 94 KFLEEFKAAAATQFGSGWAWLVYKA 118 (177)
Q Consensus 94 ~fk~~f~~~a~~~~GsGW~WLv~~~ 118 (177)
.||+.|.+.+...-|||| -|-|.
T Consensus 42 ~~kk~l~~vgi~fKGSGf--YvtDs 64 (82)
T COG2331 42 RLKKLLNAVGIVFKGSGF--YVTDS 64 (82)
T ss_pred HHHHhhccceEEEecceE--EEecc
Confidence 678888888888789995 45554
Done!