BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030437
         (177 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1NX8|A Chain A, Structure Of Carbapenem Synthase (Carc) Complexed With
           N-Acetyl Proline
 pdb|1NX8|B Chain B, Structure Of Carbapenem Synthase (Carc) Complexed With
           N-Acetyl Proline
 pdb|1NX8|C Chain C, Structure Of Carbapenem Synthase (Carc) Complexed With
           N-Acetyl Proline
          Length = 273

 Score = 27.3 bits (59), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 38/101 (37%), Gaps = 6/101 (5%)

Query: 63  SGAGAFVFHHTLTEGPEITSRSVGKAQGFIVPIE-QFAHSAFNIIYLTF----ETPDYSG 117
           SG GA++ H    E    T +++   QGF+V          F  IY  +    E  D   
Sbjct: 13  SGFGAYIDHRDFLEAKTETIKNLLMRQGFVVVKNLDIDSDTFRDIYSAYGTIVEYADEKI 72

Query: 118 SLSVQANDVAHKENEELTVVGGTGSFAF-ARGHAIFSNTQR 157
            +     D    E E+  +V G G   F A G  + S   +
Sbjct: 73  GVGFGYRDTLKLEGEKGKIVTGRGQLPFHADGGLLLSQVDQ 113


>pdb|1NX4|A Chain A, The Crystal Structure Of Carbapenem Synthase (Carc)
 pdb|1NX4|B Chain B, The Crystal Structure Of Carbapenem Synthase (Carc)
 pdb|1NX4|C Chain C, The Crystal Structure Of Carbapenem Synthase (Carc)
          Length = 273

 Score = 26.9 bits (58), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 38/101 (37%), Gaps = 6/101 (5%)

Query: 63  SGAGAFVFHHTLTEGPEITSRSVGKAQGFIVPIE-QFAHSAFNIIYLTF----ETPDYSG 117
           SG GA++ H    E    T +++   QGF+V          F  IY  +    E  D   
Sbjct: 13  SGFGAYIDHRDFLEAKTETIKNLLXRQGFVVVKNLDIDSDTFRDIYSAYGTIVEYADEKI 72

Query: 118 SLSVQANDVAHKENEELTVVGGTGSFAF-ARGHAIFSNTQR 157
            +     D    E E+  +V G G   F A G  + S   +
Sbjct: 73  GVGFGYRDTLKLEGEKGKIVTGRGQLPFHADGGLLLSQVDQ 113


>pdb|1KQF|A Chain A, Formate Dehydrogenase N From E. Coli
 pdb|1KQG|A Chain A, Formate Dehydrogenase N From E. Coli
          Length = 1015

 Score = 26.6 bits (57), Expect = 7.3,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 22/32 (68%)

Query: 115 YSGSLSVQANDVAHKENEELTVVGGTGSFAFA 146
           Y+GS + Q N +A+++N + + +G T  +A+A
Sbjct: 739 YTGSWTEQGNQMANRDNSDPSGLGNTLGWAWA 770


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.132    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,525,695
Number of Sequences: 62578
Number of extensions: 161640
Number of successful extensions: 292
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 291
Number of HSP's gapped (non-prelim): 5
length of query: 177
length of database: 14,973,337
effective HSP length: 92
effective length of query: 85
effective length of database: 9,216,161
effective search space: 783373685
effective search space used: 783373685
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)