Query 030437
Match_columns 177
No_of_seqs 137 out of 546
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 13:43:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030437.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030437hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03018 Dirigent: Dirigent-li 100.0 1E-45 2.2E-50 291.2 17.1 131 37-167 1-143 (144)
2 PF06351 Allene_ox_cyc: Allene 98.0 0.00032 6.9E-09 56.5 13.3 88 64-157 35-127 (176)
3 PLN02343 allene oxide cyclase 97.2 0.0063 1.4E-07 50.9 11.2 87 64-156 86-177 (229)
4 PF11528 DUF3224: Protein of u 94.1 0.73 1.6E-05 36.1 9.6 80 83-163 41-128 (134)
5 PF07172 GRP: Glycine rich pro 64.7 4.8 0.0001 29.7 1.9 18 13-30 9-26 (95)
6 PF12273 RCR: Chitin synthesis 56.3 11 0.00023 28.8 2.6 19 6-24 4-22 (130)
7 PF12428 DUF3675: Protein of u 54.9 11 0.00024 28.9 2.5 23 4-26 60-82 (118)
8 PF07172 GRP: Glycine rich pro 48.4 13 0.00029 27.4 1.9 28 1-28 1-28 (95)
9 PF15240 Pro-rich: Proline-ric 39.7 19 0.00041 29.7 1.7 16 14-29 4-19 (179)
10 KOG3275 Zinc-binding protein o 36.4 44 0.00095 26.0 3.1 26 141-166 87-116 (127)
11 PF11466 Doppel: Prion-like pr 34.6 43 0.00093 19.8 2.2 21 12-32 9-29 (30)
12 COG2372 CopC Uncharacterized p 31.6 2.2E+02 0.0049 22.2 6.4 41 11-51 10-59 (127)
13 PF10916 DUF2712: Protein of u 30.3 72 0.0016 25.5 3.5 24 8-31 9-32 (146)
14 PF10648 Gmad2: Immunoglobulin 30.0 1.9E+02 0.0042 20.7 5.5 51 118-169 17-69 (88)
15 PHA03292 envelope glycoprotein 27.1 22 0.00047 32.8 0.1 45 4-48 316-361 (413)
16 PF14930 Qn_am_d_aII: Quinohem 24.5 2.1E+02 0.0046 21.7 5.1 40 131-173 5-47 (108)
17 COG4068 Uncharacterized protei 23.3 43 0.00094 23.0 1.0 18 4-21 44-61 (64)
18 PF15102 TMEM154: TMEM154 prot 22.9 53 0.0012 26.3 1.6 43 6-48 58-105 (146)
19 PF06638 Strabismus: Strabismu 22.8 60 0.0013 30.9 2.1 21 2-22 160-180 (505)
20 PF12071 DUF3551: Protein of u 20.4 76 0.0016 22.8 1.8 27 4-30 2-28 (82)
No 1
>PF03018 Dirigent: Dirigent-like protein; InterPro: IPR004265 This family contains a number of proteins which are induced during disease response in plants.
Probab=100.00 E-value=1e-45 Score=291.23 Aligned_cols=131 Identities=38% Similarity=0.523 Sum_probs=121.0
Q ss_pred CeeEEEEEEeeccCCCCceeeeeecc---c--Cce-EEEEeeeeeeCCCCCCcceeeeEEEEEEecCcccceeeEEEEEE
Q 030437 37 PSMALSLYIQQPQIVSSDTQSSVAQI---S--GAG-AFVFHHTLTEGPEITSRSVGKAQGFIVPIEQFAHSAFNIIYLTF 110 (177)
Q Consensus 37 ~~~~l~lYlHd~~~~~n~T~~~v~~P---~--~fG-~~V~Dd~lt~gp~~~Sk~VGRAQG~~v~~~~~~~~~~~~~~~vF 110 (177)
|++||+|||||+.+++|+|++.++.| . .|| ++|+||||||||+++||+||||||+|+.+++++.+++++++++|
T Consensus 1 ~~t~l~fY~H~~~~g~n~t~~~v~~~~~~~~~~FG~~~V~D~~lt~gp~~~S~~VGraqG~~~~~s~~~~~~~~~~~~vF 80 (144)
T PF03018_consen 1 KETHLHFYMHDIVSGPNPTAVVVAEPPGPSSSGFGTVVVFDDPLTEGPDPDSKLVGRAQGFYVSASLDGSSWFMSFTLVF 80 (144)
T ss_pred CceEEEEEeeecCCCCCCCEEEeccCCCCCCCCCcEEEEEeeceEcCCCCCCccceEEEEEEEeecccCccEEEEEEEEE
Confidence 68899999999999999988877643 2 699 99999999999999999999999999999999999999999999
Q ss_pred ecCCCCCc-EEEEeeccCCCcceeeEEEeccccccCceeEEEEEec-cCc----EEEEEEEEE
Q 030437 111 ETPDYSGS-LSVQANDVAHKENEELTVVGGTGSFAFARGHAIFSNT-QRQ----TYHVNLRLK 167 (177)
Q Consensus 111 ~~~~~~GS-l~v~G~~~~~~~~~E~aVVGGTG~Fr~ArGya~~~~~-~~~----~~~~~~~~~ 167 (177)
++++|||| |+++|+++..+++||||||||||+||||||||++++. +.. ++|++++++
T Consensus 81 ~~g~~~GStl~v~G~~~~~~~~~e~~VVGGTG~Fr~ArG~~~~~~~~~~~~~~~v~e~~v~~~ 143 (144)
T PF03018_consen 81 EDGEYNGSTLSVMGRDPFFEPVRELAVVGGTGEFRMARGYAKLRTVFDSSGGNAVLELNVHLF 143 (144)
T ss_pred EecccCCCeEEEeCCCcccCcccEEeEecCCCeEcceEEEEEEEEEeecCCCCEEEEEEEEEE
Confidence 99999998 9999999988999999999999999999999999999 533 888888874
No 2
>PF06351 Allene_ox_cyc: Allene oxide cyclase; InterPro: IPR009410 This family consists of several plant specific allene oxide cyclase proteins (5.3.99.6 from EC). The allene oxide cyclase (AOC)-catalysed step in jasmonate (JA) biosynthesis is important in the wound response of tomato [].; GO: 0016853 isomerase activity, 0009507 chloroplast; PDB: 2GIN_A 2DIO_B 2BRJ_B 2Q4I_B 1Z8K_A 1ZVC_A.
Probab=97.98 E-value=0.00032 Score=56.49 Aligned_cols=88 Identities=25% Similarity=0.378 Sum_probs=63.6
Q ss_pred Cce-EEEEeeeeeeCCCCCCcceeeeEEEEEEecCc---ccceee-EEEEEEecCCCCCcEEEEeeccCCCcceeeEEEe
Q 030437 64 GAG-AFVFHHTLTEGPEITSRSVGKAQGFIVPIEQF---AHSAFN-IIYLTFETPDYSGSLSVQANDVAHKENEELTVVG 138 (177)
Q Consensus 64 ~fG-~~V~Dd~lt~gp~~~Sk~VGRAQG~~v~~~~~---~~~~~~-~~~~vF~~~~~~GSl~v~G~~~~~~~~~E~aVVG 138 (177)
..| .+=|.|+|++|.- .+-+|--+|+-+.-... ....+. .+++.|.+ -|-|++||.....+ ..-++|.|
T Consensus 35 slGDlvpFsNklY~g~l--~~rlGitaG~Cvliq~~p~k~GdryEaiySfyfGd---yGhISvqGpy~t~e-DtyLAVTG 108 (176)
T PF06351_consen 35 SLGDLVPFSNKLYDGDL--QKRLGITAGICVLIQHVPEKKGDRYEAIYSFYFGD---YGHISVQGPYLTYE-DTYLAVTG 108 (176)
T ss_dssp -TT-EEEEEEEEEETTS--S-EEEEEEEEEEEEEEECCCTEEEEEEEEEEE-GG---GEEEEEEEEEETTS--EEEEEEE
T ss_pred hcccccccccccccchh--hhhhcccceEEEEEEeccccCCceEEEEEEEEecc---cceEEEeccccccc-ceeEEEec
Confidence 468 8899999999975 58899999997764321 112344 34566743 57799999987764 45799999
Q ss_pred ccccccCceeEEEEEeccC
Q 030437 139 GTGSFAFARGHAIFSNTQR 157 (177)
Q Consensus 139 GTG~Fr~ArGya~~~~~~~ 157 (177)
|||-|+.|+|-++++..-.
T Consensus 109 GtGiF~g~~GqVkL~qivf 127 (176)
T PF06351_consen 109 GTGIFEGVYGQVKLHQIVF 127 (176)
T ss_dssp EEETTTT-EEEEEEEEEET
T ss_pred cCceeecceEEEEEEEeec
Confidence 9999999999999988753
No 3
>PLN02343 allene oxide cyclase
Probab=97.21 E-value=0.0063 Score=50.89 Aligned_cols=87 Identities=24% Similarity=0.396 Sum_probs=65.7
Q ss_pred Cce-EEEEeeeeeeCCCCCCcceeeeEEEEEEecCcc---cceee-EEEEEEecCCCCCcEEEEeeccCCCcceeeEEEe
Q 030437 64 GAG-AFVFHHTLTEGPEITSRSVGKAQGFIVPIEQFA---HSAFN-IIYLTFETPDYSGSLSVQANDVAHKENEELTVVG 138 (177)
Q Consensus 64 ~fG-~~V~Dd~lt~gp~~~Sk~VGRAQG~~v~~~~~~---~~~~~-~~~~vF~~~~~~GSl~v~G~~~~~~~~~E~aVVG 138 (177)
..| .+=|-|+|+.|.- -|.+|--.|+-+.-.... ...+. .+++.|.+ -|-|++||....-++ .-++|.|
T Consensus 86 sLGDlVPFsNKlY~g~L--~kRlGiTaG~Cvliq~~pek~gDryEa~ySfyfGD---yGHisvqGpyltyeD-t~LaiTG 159 (229)
T PLN02343 86 ALGDLVPFTNKLYTGDL--KKRLGITAGLCVLIQHVPEKKGDRYEAIYSFYFGD---YGHISVQGPYLTYED-TYLAITG 159 (229)
T ss_pred cccceeccccccccchh--hhhhcccceeEEEEEeccccCCceeEEEEEEEecC---cceeEEecccccccc-ceEEeec
Confidence 467 8889999998863 477899999876543211 13344 45677854 477999999887644 4799999
Q ss_pred ccccccCceeEEEEEecc
Q 030437 139 GTGSFAFARGHAIFSNTQ 156 (177)
Q Consensus 139 GTG~Fr~ArGya~~~~~~ 156 (177)
|+|-|+.|+|-+++...-
T Consensus 160 GsGiFega~GqvkL~qiv 177 (229)
T PLN02343 160 GSGIFEGAYGQVKLHQIV 177 (229)
T ss_pred CcceeecceeEEEEeeee
Confidence 999999999999998765
No 4
>PF11528 DUF3224: Protein of unknown function (DUF3224); InterPro: IPR021607 This bacterial family of proteins has no known function. ; PDB: 2OOJ_B 2Q03_B.
Probab=94.09 E-value=0.73 Score=36.08 Aligned_cols=80 Identities=23% Similarity=0.243 Sum_probs=51.4
Q ss_pred cceeeeEEEEEEecCc-ccceeeEEEEEEe--cCCCCCc--EEEEeeccCCCcceeeEEE--eccccccCceeEEEEEec
Q 030437 83 RSVGKAQGFIVPIEQF-AHSAFNIIYLTFE--TPDYSGS--LSVQANDVAHKENEELTVV--GGTGSFAFARGHAIFSNT 155 (177)
Q Consensus 83 k~VGRAQG~~v~~~~~-~~~~~~~~~~vF~--~~~~~GS--l~v~G~~~~~~~~~E~aVV--GGTG~Fr~ArGya~~~~~ 155 (177)
.+.|++++-|+.+-.. +...+..+. .|+ -+..+|| |+-.|.........+|-|| -|||++...+|-..++..
T Consensus 41 ~l~Gts~~~~L~~y~~~g~a~yva~E-~~~Gtl~Gr~GsFvl~h~G~~~~g~~~~~~~VVPgSGTGeL~Gl~Gsg~~~~~ 119 (134)
T PF11528_consen 41 DLEGTSTGEYLMAYDPDGSAGYVAFE-RFTGTLDGRSGSFVLQHSGTFDAGTASSSFTVVPGSGTGELAGLSGSGTITID 119 (134)
T ss_dssp TEEEEEEEEEEEEEECTTEEEEEEEE-EEEEEETTEEEEEEEEEEEEEETTEEEEEEEE-TT--EETTTTEEEEEEEEEE
T ss_pred EEEEEEEEEEEEEEcCCCcEEEEEEE-EEEEEECCceEEEEEEEEEEEcCCcceEEEEEeCCCCchhhcCCEEEEEEEEC
Confidence 4778888888876443 333444432 222 2568899 4556665544556789999 999999999999999888
Q ss_pred cCc-EEEEE
Q 030437 156 QRQ-TYHVN 163 (177)
Q Consensus 156 ~~~-~~~~~ 163 (177)
... .|+.+
T Consensus 120 ~g~h~y~f~ 128 (134)
T PF11528_consen 120 EGQHAYDFE 128 (134)
T ss_dssp TTCEEEEEE
T ss_pred CCCceeeEE
Confidence 754 44433
No 5
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=64.71 E-value=4.8 Score=29.72 Aligned_cols=18 Identities=39% Similarity=0.412 Sum_probs=8.8
Q ss_pred HHHHHHHHHHhhcccccc
Q 030437 13 LATLTVVLLALISPAARR 30 (177)
Q Consensus 13 ~a~l~v~lla~~s~~~~~ 30 (177)
+++|+.+||..||.++++
T Consensus 9 L~l~LA~lLlisSevaa~ 26 (95)
T PF07172_consen 9 LGLLLAALLLISSEVAAR 26 (95)
T ss_pred HHHHHHHHHHHHhhhhhH
Confidence 344444445555555554
No 6
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=56.29 E-value=11 Score=28.78 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=9.0
Q ss_pred ehhHHHHHHHHHHHHHHhh
Q 030437 6 IFCVAVVLATLTVVLLALI 24 (177)
Q Consensus 6 ~~~~~~~~a~l~v~lla~~ 24 (177)
+|.++|+++||++++++..
T Consensus 4 l~~iii~~i~l~~~~~~~~ 22 (130)
T PF12273_consen 4 LFAIIIVAILLFLFLFYCH 22 (130)
T ss_pred eHHHHHHHHHHHHHHHHHH
Confidence 4444455555544444443
No 7
>PF12428 DUF3675: Protein of unknown function (DUF3675) ; InterPro: IPR022143 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF00097 from PFAM. There are two completely conserved residues (R and L) that may be functionally important.
Probab=54.89 E-value=11 Score=28.93 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=18.9
Q ss_pred eEehhHHHHHHHHHHHHHHhhcc
Q 030437 4 RIIFCVAVVLATLTVVLLALISP 26 (177)
Q Consensus 4 ~~~~~~~~~~a~l~v~lla~~s~ 26 (177)
-.++|+.+++.|++++||==.-+
T Consensus 60 ~a~~CRsvAli~m~LLllRhal~ 82 (118)
T PF12428_consen 60 GAACCRSVALIFMVLLLLRHALA 82 (118)
T ss_pred ceeHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999865544
No 8
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=48.38 E-value=13 Score=27.35 Aligned_cols=28 Identities=14% Similarity=0.278 Sum_probs=22.1
Q ss_pred CCceEehhHHHHHHHHHHHHHHhhcccc
Q 030437 1 MLPRIIFCVAVVLATLTVVLLALISPAA 28 (177)
Q Consensus 1 ~~~~~~~~~~~~~a~l~v~lla~~s~~~ 28 (177)
|-++.++++++.+|+|++|....+.+..
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 6678888889999988888877776544
No 9
>PF15240 Pro-rich: Proline-rich
Probab=39.66 E-value=19 Score=29.70 Aligned_cols=16 Identities=44% Similarity=0.493 Sum_probs=11.6
Q ss_pred HHHHHHHHHhhccccc
Q 030437 14 ATLTVVLLALISPAAR 29 (177)
Q Consensus 14 a~l~v~lla~~s~~~~ 29 (177)
.+|.|.|||+|||-..
T Consensus 4 VLLSvALLALSSAQ~~ 19 (179)
T PF15240_consen 4 VLLSVALLALSSAQST 19 (179)
T ss_pred HHHHHHHHHhhhcccc
Confidence 4566888999988444
No 10
>KOG3275 consensus Zinc-binding protein of the histidine triad (HIT) family [Signal transduction mechanisms]
Probab=36.44 E-value=44 Score=26.05 Aligned_cols=26 Identities=23% Similarity=0.553 Sum_probs=19.7
Q ss_pred ccccCceeEEEEEeccCc----EEEEEEEE
Q 030437 141 GSFAFARGHAIFSNTQRQ----TYHVNLRL 166 (177)
Q Consensus 141 G~Fr~ArGya~~~~~~~~----~~~~~~~~ 166 (177)
=++-+++||=+.-+...+ +|||++|+
T Consensus 87 k~~Gl~~gYrvv~NnG~~g~QsV~HvH~Hv 116 (127)
T KOG3275|consen 87 KALGLEDGYRVVQNNGKDGHQSVYHVHLHV 116 (127)
T ss_pred HHhCcccceeEEEcCCcccceEEEEEEEEE
Confidence 457789999777665542 99999985
No 11
>PF11466 Doppel: Prion-like protein Doppel; InterPro: IPR021566 Dpl is a homologue related to the prion protein (PrP). Dpl is toxic to neurons and is expressed in the brains of mice that do not express PrP. In DHPC and SDS micelles, Dpl shoes about 40% alpha-helical structure however in aqueous solution it consists of a random coil. The alpha helical segment can adopt a transmembrane localisation also in a membrane. The unprocessed Dpl protein is thought to posses a possible channel formation mechanism which may be related to toxicity through direct interaction with cell membranes and damage to the cell membrane. ; PDB: 1Z65_A.
Probab=34.60 E-value=43 Score=19.84 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhhccccccCC
Q 030437 12 VLATLTVVLLALISPAARRNH 32 (177)
Q Consensus 12 ~~a~l~v~lla~~s~~~~~~~ 32 (177)
-+|++.++|+.--|++.+++.
T Consensus 9 ~lAi~c~LL~s~Ls~VkARgi 29 (30)
T PF11466_consen 9 WLAIVCVLLFSHLSSVKARGI 29 (30)
T ss_dssp HHHHHHHHHHHHTTTT---S-
T ss_pred HHHHHHHHHHHHhhHHHhccC
Confidence 468889999988898887654
No 12
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=31.55 E-value=2.2e+02 Score=22.22 Aligned_cols=41 Identities=12% Similarity=0.054 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhhccccccC-----CCC----CCCeeEEEEEEeeccCC
Q 030437 11 VVLATLTVVLLALISPAARRN-----HSS----KIPSMALSLYIQQPQIV 51 (177)
Q Consensus 11 ~~~a~l~v~lla~~s~~~~~~-----~~~----~~~~~~l~lYlHd~~~~ 51 (177)
.++..++-+.+.++.+.||.. |.. .+--..++|++-+.+..
T Consensus 10 ~~~~~~l~~~~~~~~a~AHa~l~~s~Pad~s~v~aaP~~i~L~Fse~ve~ 59 (127)
T COG2372 10 LSALALLMLALVTPQAFAHAYLVSSNPADNSVVTAAPAAITLEFSEGVEP 59 (127)
T ss_pred HHHHHHHHHHhcCcchhheeeeecCCCCCcchhhcCceeEEEecCCccCC
Confidence 343333334444455566653 322 12223788888887653
No 13
>PF10916 DUF2712: Protein of unknown function (DUF2712); InterPro: IPR020208 This entry represents a group of uncharacterised proteins.
Probab=30.35 E-value=72 Score=25.53 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHhhccccccC
Q 030437 8 CVAVVLATLTVVLLALISPAARRN 31 (177)
Q Consensus 8 ~~~~~~a~l~v~lla~~s~~~~~~ 31 (177)
++.+.+|++++++++.++.+.+.+
T Consensus 9 ~~~~~a~~~~~~~~a~~~~~~Asd 32 (146)
T PF10916_consen 9 VRLILAAAIGISVFAFVSHAAASD 32 (146)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcc
Confidence 355667778888888887765543
No 14
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.
Probab=30.00 E-value=1.9e+02 Score=20.65 Aligned_cols=51 Identities=14% Similarity=0.243 Sum_probs=32.1
Q ss_pred cEEEEeeccCCCcceeeEEEeccccccCceeEEEEEeccCc--EEEEEEEEEcC
Q 030437 118 SLSVQANDVAHKENEELTVVGGTGSFAFARGHAIFSNTQRQ--TYHVNLRLKFP 169 (177)
Q Consensus 118 Sl~v~G~~~~~~~~~E~aVVGGTG~Fr~ArGya~~~~~~~~--~~~~~~~~~~p 169 (177)
.+.|.|.-...|..=.|-|..|.|+-. ++|++........ .|+..+.++=|
T Consensus 17 p~~V~G~A~~FEgtv~~rv~D~~g~vl-~e~~~~a~~g~~~~g~F~~tv~~~~~ 69 (88)
T PF10648_consen 17 PVKVSGKARVFEGTVNIRVRDGHGEVL-AEGFVTATGGAPSWGPFEGTVSFPPP 69 (88)
T ss_pred CEEEEEEEEEeeeEEEEEEEcCCCcEE-EEeeEEeccCCCcccceEEEEEeCCC
Confidence 366777766666666677777777766 7777765433322 77776666543
No 15
>PHA03292 envelope glycoprotein I; Provisional
Probab=27.08 E-value=22 Score=32.75 Aligned_cols=45 Identities=13% Similarity=0.280 Sum_probs=33.9
Q ss_pred eEehhHHHHHHHHHHHHHHhhcccccc-CCCCCCCeeEEEEEEeec
Q 030437 4 RIIFCVAVVLATLTVVLLALISPAARR-NHSSKIPSMALSLYIQQP 48 (177)
Q Consensus 4 ~~~~~~~~~~a~l~v~lla~~s~~~~~-~~~~~~~~~~l~lYlHd~ 48 (177)
||++.++|.+|++.++|||...++.-. -+++--+|..-+.|.-..
T Consensus 316 k~~a~ivip~~~~~llll~~~gaiin~a~rkh~l~casrriy~~~~ 361 (413)
T PHA03292 316 KIVAMIVIPTACVVLLLLAVVGAIINGAVRKHLLSCASRRIYRPRQ 361 (413)
T ss_pred cEEEEEEhHHHHHHHHHHHHHHHHHhHHHHHhhhhcccceeeccCC
Confidence 789999999999999999998774332 233457777778887654
No 16
>PF14930 Qn_am_d_aII: Quinohemoprotein amine dehydrogenase, alpha subunit domain II; PDB: 1JMZ_A 1JMX_A 1PBY_A 1JJU_A.
Probab=24.53 E-value=2.1e+02 Score=21.70 Aligned_cols=40 Identities=23% Similarity=0.512 Sum_probs=27.2
Q ss_pred ceeeEEEe---ccccccCceeEEEEEeccCcEEEEEEEEEcCCCCc
Q 030437 131 NEELTVVG---GTGSFAFARGHAIFSNTQRQTYHVNLRLKFPNRSH 173 (177)
Q Consensus 131 ~~E~aVVG---GTG~Fr~ArGya~~~~~~~~~~~~~~~~~~p~~~~ 173 (177)
..+|.|+| |-|+| .|+..++....+.|++.+.+++.+-+.
T Consensus 5 ~G~W~~sG~~PG~G~~---~G~mtv~~~~~d~Y~v~~~~~~adG~~ 47 (108)
T PF14930_consen 5 AGRWVVSGHLPGKGDY---TGTMTVTPGGDDRYEVSMTLRYADGSE 47 (108)
T ss_dssp -EEEEEEEEETTTEEE---EEEEEEEEETTTEEEEEEEEEETTCEE
T ss_pred CccEEEEecCCCCccE---EEEEEEccCCCCceEEEEEEEecCCCe
Confidence 35566666 55665 577777777777888888877766543
No 17
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=23.27 E-value=43 Score=23.01 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=14.2
Q ss_pred eEehhHHHHHHHHHHHHH
Q 030437 4 RIIFCVAVVLATLTVVLL 21 (177)
Q Consensus 4 ~~~~~~~~~~a~l~v~ll 21 (177)
||+|+.+.++..++|+|.
T Consensus 44 ~~~~~li~aLi~v~vvL~ 61 (64)
T COG4068 44 MILMFLILALILVMVVLP 61 (64)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 678898888877777763
No 18
>PF15102 TMEM154: TMEM154 protein family
Probab=22.86 E-value=53 Score=26.26 Aligned_cols=43 Identities=16% Similarity=0.202 Sum_probs=20.4
Q ss_pred ehhHHHHHHHHHHHHHHhhccccccCCCC-CC----CeeEEEEEEeec
Q 030437 6 IFCVAVVLATLTVVLLALISPAARRNHSS-KI----PSMALSLYIQQP 48 (177)
Q Consensus 6 ~~~~~~~~a~l~v~lla~~s~~~~~~~~~-~~----~~~~l~lYlHd~ 48 (177)
|..++|-+++|+||||..+.=+=+.++++ |+ ...+-.+|.|+.
T Consensus 58 iLmIlIP~VLLvlLLl~vV~lv~~~kRkr~K~~~ss~gsq~~~qt~e~ 105 (146)
T PF15102_consen 58 ILMILIPLVLLVLLLLSVVCLVIYYKRKRTKQEPSSQGSQSALQTYEL 105 (146)
T ss_pred EEEEeHHHHHHHHHHHHHHHheeEEeecccCCCCcccccccccccccc
Confidence 55566665555555555443333333322 21 123566666663
No 19
>PF06638 Strabismus: Strabismus protein; InterPro: IPR009539 This family consists of several strabismus (STB) or Van Gogh-like (VANGL) proteins 1 and 2. The exact function of this family is unknown. It is thought, however that STB1 gene and STB2 may be potent tumour suppressor gene candidates [].; GO: 0007275 multicellular organismal development, 0016021 integral to membrane
Probab=22.78 E-value=60 Score=30.90 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=17.6
Q ss_pred CceEehhHHHHHHHHHHHHHH
Q 030437 2 LPRIIFCVAVVLATLTVVLLA 22 (177)
Q Consensus 2 ~~~~~~~~~~~~a~l~v~lla 22 (177)
|+||.+|+++.++++++++++
T Consensus 160 lPRif~fRa~ll~Lvfl~~~s 180 (505)
T PF06638_consen 160 LPRIFVFRALLLVLVFLFLFS 180 (505)
T ss_pred CchhHHHHHHHHHHHHHHHHH
Confidence 799999999988888877654
No 20
>PF12071 DUF3551: Protein of unknown function (DUF3551); InterPro: IPR021937 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 79 to 104 amino acids in length. This protein has a single completely conserved residue C that may be functionally important.
Probab=20.43 E-value=76 Score=22.78 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=12.1
Q ss_pred eEehhHHHHHHHHHHHHHHhhcccccc
Q 030437 4 RIIFCVAVVLATLTVVLLALISPAARR 30 (177)
Q Consensus 4 ~~~~~~~~~~a~l~v~lla~~s~~~~~ 30 (177)
|-.+.+++++.+++++++.+.+|..++
T Consensus 2 R~~~~aa~a~~~~~~~~~~~~~pA~A~ 28 (82)
T PF12071_consen 2 RRLLLAALALLLAAALLALAAAPAQAR 28 (82)
T ss_pred hhHHHHHHHHHHHHHHHhccccchhhc
Confidence 334455555433444444444444443
Done!