Query 030437
Match_columns 177
No_of_seqs 137 out of 546
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 22:19:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030437.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030437hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2brj_A Arabidopsis thaliana ge 98.8 1.8E-07 6.2E-12 75.0 15.5 88 64-157 44-136 (188)
2 4h6b_A Allene oxide cyclase; B 98.6 2.5E-06 8.5E-11 68.7 14.5 88 64-157 52-144 (195)
3 2ooj_A Hypothetical protein; s 91.8 1.9 6.7E-05 32.9 10.2 86 83-171 42-136 (141)
4 2q03_A Uncharacterized protein 91.2 1.7 5.9E-05 33.1 9.3 83 83-166 46-137 (138)
5 3h6j_A Neuraminidase, sialidas 36.6 20 0.00068 30.4 2.7 51 101-153 373-435 (438)
6 1z65_A PRPLP, prion-like prote 34.7 36 0.0012 19.3 2.7 20 13-32 10-29 (30)
7 3arc_I Photosystem II reaction 24.8 99 0.0034 18.4 3.6 26 10-35 10-35 (38)
8 1una_A GA unassembled coat pro 14.4 1.3E+02 0.0043 22.0 2.9 8 159-166 56-63 (129)
9 1msc_A Bacteriophage MS2 coat 13.9 1.3E+02 0.0043 21.9 2.8 8 159-166 57-64 (129)
10 2krs_A Probable enterotoxin; a 11.7 1.2E+02 0.0042 19.4 2.1 16 73-88 12-27 (74)
No 1
>2brj_A Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone\:K13N2; cyclase, jasmonate synthesis, allene oxide cyclase, beta barrel; 1.5A {Arabidopsis thaliana} SCOP: b.159.1.1 PDB: 2dio_A* 2gin_A 1z8k_A* 2q4i_A 1zvc_A
Probab=98.83 E-value=1.8e-07 Score=74.96 Aligned_cols=88 Identities=28% Similarity=0.356 Sum_probs=67.7
Q ss_pred Cce-EEEEeeeeeeCCCCCCcceeeeEEEEEEecC----cccceeeEEEEEEecCCCCCcEEEEeeccCCCcceeeEEEe
Q 030437 64 GAG-AFVFHHTLTEGPEITSRSVGKAQGFIVPIEQ----FAHSAFNIIYLTFETPDYSGSLSVQANDVAHKENEELTVVG 138 (177)
Q Consensus 64 ~fG-~~V~Dd~lt~gp~~~Sk~VGRAQG~~v~~~~----~~~~~~~~~~~vF~~~~~~GSl~v~G~~~~~~~~~E~aVVG 138 (177)
..| .+.|+++|.++.. -+.||.-+|+-+.... .+..+--.+++.|-+ .|.|++||..... +...+||+|
T Consensus 44 slGDlvpFsNkLydg~l--~~rvG~taG~Cv~~~~~p~~~gdryE~tyS~yfgd---~GhISvQGpy~t~-~Dt~LAITG 117 (188)
T 2brj_A 44 GLGDLVPFTNKLYTGDL--KKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGD---YGHLSVQGPYLTY-EDSFLAITG 117 (188)
T ss_dssp CTTCEEEECCEEEETTS--SCEEEEEEEEEEEEEEEGGGTEEEEEEEEEEECGG---GEEEEEEEEEETT-BCEEEEEEE
T ss_pred CcccEEeeccccccccc--ceeccccceEEEEEEecCCCCCcEEEEEEEEEeCC---CceEEEecccccc-ccceeeEec
Confidence 367 8999999997764 4889999999777642 222233345667754 5789999996544 446899999
Q ss_pred ccccccCceeEEEEEeccC
Q 030437 139 GTGSFAFARGHAIFSNTQR 157 (177)
Q Consensus 139 GTG~Fr~ArGya~~~~~~~ 157 (177)
|||.|+.|+|.+++++...
T Consensus 118 GTGif~gA~G~Vkl~~i~~ 136 (188)
T 2brj_A 118 GAGIFEGAYGQVKLQQLVY 136 (188)
T ss_dssp EEETTTTCEEEEEEEEEET
T ss_pred CcceEcceEEEEEEEeecc
Confidence 9999999999999999863
No 2
>4h6b_A Allene oxide cyclase; B-barrel, oxylipins, fatty acid, metabolites, allene-oxide C activity, isomerase; HET: 10X 10Y; 1.35A {Physcomitrella patens} PDB: 4h6c_A 4h6a_A* 4h69_A*
Probab=98.56 E-value=2.5e-06 Score=68.67 Aligned_cols=88 Identities=22% Similarity=0.351 Sum_probs=67.4
Q ss_pred Cce-EEEEeeeeeeCCCCCCcceeeeEEEEEEecC-cc--cceee-EEEEEEecCCCCCcEEEEeeccCCCcceeeEEEe
Q 030437 64 GAG-AFVFHHTLTEGPEITSRSVGKAQGFIVPIEQ-FA--HSAFN-IIYLTFETPDYSGSLSVQANDVAHKENEELTVVG 138 (177)
Q Consensus 64 ~fG-~~V~Dd~lt~gp~~~Sk~VGRAQG~~v~~~~-~~--~~~~~-~~~~vF~~~~~~GSl~v~G~~~~~~~~~E~aVVG 138 (177)
..| .+.|+++|+++.. -+-||--.|+-+.... .. ...+. .+++.|.+ -|+|+++|.....+. .-++|+|
T Consensus 52 slGDLvpFsnkLydg~l--~~RiGitaG~Cv~i~~~~~k~GdryEci~Tf~fGD---~GhIsvqGpy~t~eD-s~lAITG 125 (195)
T 4h6b_A 52 SLGDLVPFSNKIYDGSL--KTRLGITAGLCTLISHSDQKNGDRYEALYSFYFGD---YGHISVQGPYITYED-SYLAITG 125 (195)
T ss_dssp CTTCEEEECCEEEETTS--CCEEEEEEEEEEEEEEETTTTEEEEEEEEEEECGG---GCEEEEEEEEETTBC-EEEEEEE
T ss_pred ccccccccccccccccc--cccccccccEEEEEeecCCCCCceEEEEEEEEecC---CceEEEecceeccCc-eeEEEec
Confidence 478 9999999999986 5789999999766531 11 12233 34566754 689999999866544 5699999
Q ss_pred ccccccCceeEEEEEeccC
Q 030437 139 GTGSFAFARGHAIFSNTQR 157 (177)
Q Consensus 139 GTG~Fr~ArGya~~~~~~~ 157 (177)
|||.|+.|+|-+++...-.
T Consensus 126 GTGiF~Ga~GqVkl~qiv~ 144 (195)
T 4h6b_A 126 GSGIFAGCYGQAKLHQIIF 144 (195)
T ss_dssp ESGGGTTCEEEEEEEEEET
T ss_pred CcceEcccEEEEEEeEeee
Confidence 9999999999999987763
No 3
>2ooj_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 1.84A {Shewanella oneidensis} SCOP: b.159.2.1
Probab=91.84 E-value=1.9 Score=32.88 Aligned_cols=86 Identities=19% Similarity=0.162 Sum_probs=57.1
Q ss_pred cceeeeEEEEEEecCcc--cceeeEEEEEEe--cCCCCCc--EEEEeeccCCCcceeeEEEe--ccccccCceeEEEEEe
Q 030437 83 RSVGKAQGFIVPIEQFA--HSAFNIIYLTFE--TPDYSGS--LSVQANDVAHKENEELTVVG--GTGSFAFARGHAIFSN 154 (177)
Q Consensus 83 k~VGRAQG~~v~~~~~~--~~~~~~~~~vF~--~~~~~GS--l~v~G~~~~~~~~~E~aVVG--GTG~Fr~ArGya~~~~ 154 (177)
.+.|+.++-++.+-... ...+..+. .|+ -+..+|| |+-.|..........|-||= |||++...+|-..++.
T Consensus 42 ~leGts~~~~L~~~~~~~G~A~yva~E-~f~Gtl~Gr~GsFvlqh~Gt~~~g~~~~~~~VVPgSGTGeL~Gl~G~g~~~~ 120 (141)
T 2ooj_A 42 ELEARSQGEMLSAMTAVKGSAGYVAIE-QVVGKLCGRQGSFVLQHFGIMTDGQNRLHLEVVPHSGAGELTGLYGTMAISI 120 (141)
T ss_dssp SEEEEEEEEEEEEECSSTTCEEEEEEE-EEEEEETTEEEEEEEEEEEEECC--CEEEEEECTTCCEETTTTEEEEEEEEE
T ss_pred eEEEEEEEEEEEEEcCCCCcEEEEEEE-EEEEEECCceEEEEEEEEEEEcCCcceEEEEEeCCCccccccCcEEEEEEEE
Confidence 47788899888876542 22444332 222 2567899 45566666556678999998 9999999999999987
Q ss_pred ccCc-EEEEEEEEEcCCC
Q 030437 155 TQRQ-TYHVNLRLKFPNR 171 (177)
Q Consensus 155 ~~~~-~~~~~~~~~~p~~ 171 (177)
.+.+ .|+++.+ ||..
T Consensus 121 ~~G~h~y~ldy~--l~~~ 136 (141)
T 2ooj_A 121 ENGQHFYEFSFC--FEPA 136 (141)
T ss_dssp ETTEEEEEEEEE--ECC-
T ss_pred cCCeEEEEEEEE--cCCC
Confidence 7533 6666554 4543
No 4
>2q03_A Uncharacterized protein; YP_563039.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.80A {Shewanella denitrificans OS217} SCOP: b.159.2.1
Probab=91.24 E-value=1.7 Score=33.10 Aligned_cols=83 Identities=23% Similarity=0.231 Sum_probs=57.3
Q ss_pred cceeeeEEEEEEecCcc-cceeeEEEEEEe--cCCCCCc--EEEEeeccCCCcceeeEEEe--ccccccCceeEEEEEec
Q 030437 83 RSVGKAQGFIVPIEQFA-HSAFNIIYLTFE--TPDYSGS--LSVQANDVAHKENEELTVVG--GTGSFAFARGHAIFSNT 155 (177)
Q Consensus 83 k~VGRAQG~~v~~~~~~-~~~~~~~~~vF~--~~~~~GS--l~v~G~~~~~~~~~E~aVVG--GTG~Fr~ArGya~~~~~ 155 (177)
.+.|+.++-++.+-... ...+..+. .|+ -+..+|| |+-.|..........|-||= |||++...+|-..++..
T Consensus 46 ~leGts~~~~L~~~~~~G~A~yva~E-~f~Gtl~Gr~GsFvlqh~Gt~~~g~~~~~~~VVPgSGTGeLaGl~G~g~~~~~ 124 (138)
T 2q03_A 46 VLQGHSEIRYLMSYQDNANATFVGFE-HFTGSLGDKKGSFILQHKGLFAAGVASSEFELVERSATGDFVHLVGKGHFVST 124 (138)
T ss_dssp SEEEEEEEEEEEEEEETTEEEEEEEE-EEEEEETTEEEEEEEEEEEEEETTEEEEEEEECTTCCEETTTTEEEEEEEEEC
T ss_pred EEEEEEEEEEEEEEcCCCcEEEEEEE-EEEEEECCceEEEEEEEEEEEcCCcceEEEEEeCCCccccccCcEEEEEEEEe
Confidence 47788888887765532 22333332 232 2567889 45566665555668999998 99999999999999877
Q ss_pred cCc--EEEEEEEE
Q 030437 156 QRQ--TYHVNLRL 166 (177)
Q Consensus 156 ~~~--~~~~~~~~ 166 (177)
+++ .|+++.++
T Consensus 125 ~~G~h~Y~~~y~~ 137 (138)
T 2q03_A 125 ENGQANYQITLQD 137 (138)
T ss_dssp STTEEEEEEEEEE
T ss_pred cCCceEEEEEEec
Confidence 634 78877664
No 5
>3h6j_A Neuraminidase, sialidase; six-bladed beta-propeller, cell WALL, glycosidase, hydrolase, peptidoglycan-anchor, secreted; 1.60A {Pseudomonas aeruginosa} PDB: 2w38_A
Probab=36.62 E-value=20 Score=30.38 Aligned_cols=51 Identities=25% Similarity=0.220 Sum_probs=29.5
Q ss_pred ceee-EEEEEEecCCCCCc-EEE-EeeccCCCcceeeEEEeccccc---------cCceeEEEEE
Q 030437 101 SAFN-IIYLTFETPDYSGS-LSV-QANDVAHKENEELTVVGGTGSF---------AFARGHAIFS 153 (177)
Q Consensus 101 ~~~~-~~~~vF~~~~~~GS-l~v-~G~~~~~~~~~E~aVVGGTG~F---------r~ArGya~~~ 153 (177)
+.|+ .|--.|+++.+||| -++ .|.... .-+.=+-|=|||.| |+|.||-..+
T Consensus 373 stwnivmpsyfndgghkgsgaqvevgslni--rlgtgaavwgtgyfggidnsattrlatgyyrvr 435 (438)
T 3h6j_A 373 STWNIVMPSYFNDGGHKGSGAQVEVGSLNI--RLGTGAAVWGTGYFGGIDNSATTRLATGYYRVR 435 (438)
T ss_dssp SCCEECCCEEEESSSEEEESEEEEECSSEE--EEEECSBSBCCSCBTTTBCSGGGCBSEEEEEEE
T ss_pred cceeEeccceecCCCcCCccceEEeeeEEE--EeccCceeeeccccccccchhhheeccceEEEE
Confidence 4444 45668999999999 665 333222 12222345578877 5566665443
No 6
>1z65_A PRPLP, prion-like protein doppel, doppelganger; transmembrane helix, DHPC, mouse doppel, unknown function; NMR {Synthetic}
Probab=34.68 E-value=36 Score=19.30 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhccccccCC
Q 030437 13 LATLTVVLLALISPAARRNH 32 (177)
Q Consensus 13 ~a~l~v~lla~~s~~~~~~~ 32 (177)
+|++.++|+..-|.+.++..
T Consensus 10 lai~c~LLfs~Ls~vkArgi 29 (30)
T 1z65_A 10 VAILCMLLASHLSTVKARGI 29 (30)
T ss_dssp HHHHHHHHHHHTTTTCCCSC
T ss_pred HHHHHHHHHhhHHHHHhccC
Confidence 67888888888888877654
No 7
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=24.80 E-value=99 Score=18.39 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHhhccccccCCCCC
Q 030437 10 AVVLATLTVVLLALISPAARRNHSSK 35 (177)
Q Consensus 10 ~~~~a~l~v~lla~~s~~~~~~~~~~ 35 (177)
+++.-|..+..+--.|..|.++|+++
T Consensus 10 ~vV~ffvsLFiFGfLsnDP~RNP~rk 35 (38)
T 3arc_I 10 IVVTFFVLLFVFGFLSGDPARNPKRK 35 (38)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCSSSCC
T ss_pred hHHHHHHHHHHccccCCCCCCCCCcc
Confidence 34444444444455588999988543
No 8
>1una_A GA unassembled coat protein dimer; unassembled virus coat protein dimer, bacteriophage, RNA- binding dimer, translational repressor; 2.80A {Enterobacteria phage GA} SCOP: d.85.1.1 PDB: 1gav_A
Probab=14.36 E-value=1.3e+02 Score=21.96 Aligned_cols=8 Identities=25% Similarity=0.737 Sum_probs=5.2
Q ss_pred EEEEEEEE
Q 030437 159 TYHVNLRL 166 (177)
Q Consensus 159 ~~~~~~~~ 166 (177)
.|.+|+++
T Consensus 56 kytik~ev 63 (129)
T 1una_A 56 KYTIKLEV 63 (129)
T ss_dssp EEEEEEEE
T ss_pred eeEEEEec
Confidence 67777654
No 9
>1msc_A Bacteriophage MS2 coat protein; translation repressor, viral protein; 2.00A {Enterobacterio phage MS2} SCOP: d.85.1.1 PDB: 2bu1_A* 1u1y_A 1zdi_A 1zdj_A 1zdk_A 1zdh_A* 2c4q_A* 2c4y_A* 2c4z_A* 2c50_A 2c51_A 2iz8_A 2iz9_A* 2izm_A 2izn_A 2ms2_A 5msf_A 6msf_A 7msf_A 1aq3_A ...
Probab=13.94 E-value=1.3e+02 Score=21.94 Aligned_cols=8 Identities=13% Similarity=0.646 Sum_probs=5.5
Q ss_pred EEEEEEEE
Q 030437 159 TYHVNLRL 166 (177)
Q Consensus 159 ~~~~~~~~ 166 (177)
.|.+|+++
T Consensus 57 kytik~ev 64 (129)
T 1msc_A 57 KYTIKVEV 64 (129)
T ss_dssp EEEEEEEE
T ss_pred eeEEEEec
Confidence 67777764
No 10
>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}
Probab=11.75 E-value=1.2e+02 Score=19.43 Aligned_cols=16 Identities=19% Similarity=0.420 Sum_probs=14.1
Q ss_pred eeeeCCCCCCcceeee
Q 030437 73 TLTEGPEITSRSVGKA 88 (177)
Q Consensus 73 ~lt~gp~~~Sk~VGRA 88 (177)
.|+.+|+.++++++++
T Consensus 12 nvRs~P~~~~~vi~~l 27 (74)
T 2krs_A 12 NMRSGPGSNYGVIGTL 27 (74)
T ss_dssp EEESSSSTTTCEEEEE
T ss_pred EEEcCCCCCChHHEEE
Confidence 6889999999999886
Done!