Query 030438
Match_columns 177
No_of_seqs 135 out of 400
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 13:44:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030438.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030438hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02810 carbon-monoxide oxyge 100.0 2.3E-58 4.9E-63 381.6 16.8 177 1-177 54-231 (231)
2 PLN02680 carbon-monoxide oxyge 100.0 1.5E-54 3.3E-59 360.2 16.3 171 1-171 54-225 (232)
3 PLN02351 cytochromes b561 fami 100.0 6.5E-54 1.4E-58 357.4 16.4 174 1-176 58-235 (242)
4 cd08764 Cyt_b561_CG1275_like N 100.0 6.9E-53 1.5E-57 347.5 16.0 166 1-167 31-199 (214)
5 KOG1619 Cytochrome b [Energy p 100.0 8.7E-53 1.9E-57 348.5 13.1 167 1-167 62-229 (245)
6 cd08766 Cyt_b561_ACYB-1_like P 100.0 6.8E-46 1.5E-50 289.8 11.3 130 1-130 15-144 (144)
7 cd08765 Cyt_b561_CYBRD1 Verteb 100.0 1.9E-45 4.2E-50 289.4 11.6 131 1-131 19-152 (153)
8 cd08762 Cyt_b561_CYBASC3 Verte 100.0 5E-45 1.1E-49 292.9 12.2 132 1-132 42-176 (179)
9 cd08763 Cyt_b561_CYB561 Verteb 100.0 8.8E-44 1.9E-48 277.6 11.1 129 1-129 14-143 (143)
10 cd08554 Cyt_b561 Eukaryotic cy 100.0 2.3E-31 4.9E-36 203.0 10.2 122 1-122 9-131 (131)
11 PF03188 Cytochrom_B561: Eukar 100.0 1.8E-30 3.9E-35 198.4 11.5 128 1-128 6-136 (137)
12 cd08761 Cyt_b561_CYB561D2_like 100.0 1.1E-30 2.5E-35 210.0 10.1 126 1-126 28-159 (183)
13 smart00665 B561 Cytochrome b-5 100.0 4E-30 8.8E-35 196.0 9.7 122 1-122 6-129 (129)
14 cd08760 Cyt_b561_FRRS1_like Eu 99.9 5.2E-22 1.1E-26 160.3 14.8 120 1-124 43-162 (191)
15 PF10348 DUF2427: Domain of un 98.1 1E-05 2.2E-10 60.2 6.8 77 1-86 25-103 (105)
16 smart00665 B561 Cytochrome b-5 97.3 0.0065 1.4E-07 45.9 11.1 124 29-159 1-125 (129)
17 PF03188 Cytochrom_B561: Eukar 97.1 0.016 3.4E-07 43.8 12.0 92 29-125 1-94 (137)
18 cd08554 Cyt_b561 Eukaryotic cy 97.1 0.019 4.1E-07 43.3 11.9 123 28-159 3-127 (131)
19 PF00033 Cytochrom_B_N: Cytoch 96.9 0.018 3.8E-07 45.0 11.1 142 26-167 8-176 (188)
20 cd08763 Cyt_b561_CYB561 Verteb 96.8 0.087 1.9E-06 41.2 14.0 94 26-124 6-99 (143)
21 KOG4293 Predicted membrane pro 96.8 4.1E-05 8.8E-10 69.0 -5.7 117 3-123 221-340 (403)
22 cd08761 Cyt_b561_CYB561D2_like 96.8 0.061 1.3E-06 43.1 13.3 131 27-163 21-155 (183)
23 PF13301 DUF4079: Protein of u 96.7 0.023 4.9E-07 46.0 10.4 91 27-123 80-170 (175)
24 cd08760 Cyt_b561_FRRS1_like Eu 96.4 0.16 3.4E-06 40.8 13.4 95 22-124 31-126 (191)
25 cd08764 Cyt_b561_CG1275_like N 95.5 0.38 8.2E-06 40.1 12.0 110 12-124 7-118 (214)
26 PF13706 PepSY_TM_3: PepSY-ass 95.1 0.016 3.4E-07 35.2 2.0 31 59-89 3-33 (37)
27 PF01292 Ni_hydr_CYTB: Prokary 94.9 1 2.3E-05 34.9 12.4 142 26-171 6-174 (182)
28 cd08766 Cyt_b561_ACYB-1_like P 94.2 2.1 4.7E-05 33.4 13.0 92 27-124 8-99 (144)
29 PLN02680 carbon-monoxide oxyge 94.1 2.6 5.6E-05 35.7 13.5 112 7-124 23-138 (232)
30 PLN02351 cytochromes b561 fami 93.0 5.2 0.00011 34.1 13.6 111 6-124 24-141 (242)
31 TIGR02125 CytB-hydogenase Ni/F 92.7 2.9 6.2E-05 33.5 11.4 145 26-174 7-199 (211)
32 PRK11513 cytochrome b561; Prov 92.7 1.3 2.9E-05 35.4 9.3 97 25-124 8-104 (176)
33 cd08762 Cyt_b561_CYBASC3 Verte 92.3 5.3 0.00012 32.5 14.2 114 6-124 12-129 (179)
34 PF04238 DUF420: Protein of un 91.8 3.5 7.6E-05 31.8 10.3 92 28-125 6-103 (133)
35 PF13172 PepSY_TM_1: PepSY-ass 91.7 0.33 7.2E-06 28.6 3.5 28 96-123 2-29 (34)
36 PF00033 Cytochrom_B_N: Cytoch 91.3 2.7 5.8E-05 32.5 9.4 55 70-124 14-71 (188)
37 PF13706 PepSY_TM_3: PepSY-ass 90.4 0.49 1.1E-05 28.5 3.5 28 96-123 1-28 (37)
38 cd08765 Cyt_b561_CYBRD1 Verteb 88.5 11 0.00024 29.9 13.8 93 27-124 12-106 (153)
39 COG3038 CybB Cytochrome B561 [ 87.4 7.3 0.00016 31.7 9.4 93 26-123 12-108 (181)
40 PF13703 PepSY_TM_2: PepSY-ass 85.4 4.7 0.0001 28.3 6.6 58 26-83 16-83 (88)
41 COG3038 CybB Cytochrome B561 [ 85.3 9.2 0.0002 31.1 9.0 52 71-123 19-70 (181)
42 PF01292 Ni_hydr_CYTB: Prokary 85.1 15 0.00033 28.2 10.4 51 70-121 12-64 (182)
43 PLN02810 carbon-monoxide oxyge 84.3 24 0.00053 29.8 13.4 113 6-124 22-138 (231)
44 PF11158 DUF2938: Protein of u 82.3 2.6 5.6E-05 33.3 4.5 88 25-115 57-148 (150)
45 PF13703 PepSY_TM_2: PepSY-ass 81.7 7.6 0.00016 27.3 6.4 25 99-123 60-84 (88)
46 PF01794 Ferric_reduct: Ferric 77.7 14 0.0003 26.5 7.0 55 67-122 1-56 (125)
47 PF03929 PepSY_TM: PepSY-assoc 77.3 3.8 8.1E-05 23.2 2.9 25 60-84 1-25 (27)
48 KOG1619 Cytochrome b [Energy p 74.5 38 0.00082 28.9 9.4 113 7-124 32-147 (245)
49 TIGR01583 formate-DH-gamm form 74.4 42 0.0009 27.1 9.6 136 26-165 9-172 (204)
50 PRK15006 thiosulfate reductase 74.2 54 0.0012 27.9 11.1 54 27-80 74-127 (261)
51 PF10067 DUF2306: Predicted me 73.5 24 0.00053 25.5 7.2 28 96-123 2-29 (103)
52 PF13172 PepSY_TM_1: PepSY-ass 70.9 5 0.00011 23.4 2.5 25 60-84 5-29 (34)
53 PF08507 COPI_assoc: COPI asso 70.2 45 0.00098 25.3 11.2 81 27-122 4-84 (136)
54 PRK05419 putative sulfite oxid 67.6 64 0.0014 26.5 9.3 60 54-119 34-93 (205)
55 PRK11513 cytochrome b561; Prov 65.6 56 0.0012 26.0 8.4 50 71-123 16-65 (176)
56 PF09990 DUF2231: Predicted me 64.9 49 0.0011 23.7 7.9 45 33-77 12-56 (104)
57 PF06609 TRI12: Fungal trichot 58.9 63 0.0014 31.0 8.7 69 65-138 196-270 (599)
58 PF10348 DUF2427: Domain of un 57.1 75 0.0016 23.3 10.0 89 21-125 12-103 (105)
59 PRK10263 DNA translocase FtsK; 56.7 71 0.0015 33.6 9.0 59 30-89 20-87 (1355)
60 PRK10639 formate dehydrogenase 55.9 96 0.0021 25.2 8.3 132 27-164 15-173 (211)
61 PF10856 DUF2678: Protein of u 55.7 21 0.00046 27.1 4.0 63 21-90 22-84 (118)
62 PF14358 DUF4405: Domain of un 53.7 53 0.0011 21.5 5.4 50 67-116 5-58 (64)
63 PRK10171 hydrogenase 1 b-type 52.6 1.3E+02 0.0029 24.8 12.5 59 27-85 19-84 (235)
64 PLN02631 ferric-chelate reduct 52.5 1.7E+02 0.0036 28.8 10.5 25 97-121 186-210 (699)
65 PF10215 Ost4: Oligosaccaryltr 50.7 20 0.00044 21.5 2.6 25 141-167 8-32 (35)
66 PF13301 DUF4079: Protein of u 49.5 1.4E+02 0.003 24.1 11.1 105 33-153 58-162 (175)
67 PF02628 COX15-CtaA: Cytochrom 45.5 1.5E+02 0.0033 25.2 8.3 75 27-113 226-300 (302)
68 PF03189 Otopetrin: Otopetrin; 44.5 2.4E+02 0.0052 25.9 9.8 64 102-165 275-340 (441)
69 PRK13673 hypothetical protein; 44.2 96 0.0021 23.6 6.0 91 16-123 20-110 (118)
70 PRK10639 formate dehydrogenase 41.9 1.7E+02 0.0036 23.8 7.6 64 60-124 107-174 (211)
71 PF07457 DUF1516: Protein of u 41.6 1.3E+02 0.0027 22.5 6.3 52 22-75 28-79 (110)
72 PF07857 DUF1632: CEO family ( 38.9 1.2E+02 0.0027 25.8 6.6 63 100-167 73-139 (254)
73 COG3658 Cytochrome b [Energy p 38.8 2.2E+02 0.0047 23.3 10.7 102 62-164 35-169 (192)
74 KOG2234 Predicted UDP-galactos 33.3 2.2E+02 0.0048 25.6 7.5 57 33-91 147-205 (345)
75 PF14927 Neurensin: Neurensin 33.1 1.9E+02 0.0041 22.6 6.3 27 97-123 41-67 (140)
76 PF14358 DUF4405: Domain of un 32.9 1.4E+02 0.003 19.4 5.1 51 27-77 3-58 (64)
77 PF04238 DUF420: Protein of un 32.3 2.3E+02 0.005 21.7 9.9 87 24-123 28-127 (133)
78 PF05449 DUF754: Protein of un 29.7 1.2E+02 0.0027 21.4 4.4 46 37-82 4-49 (83)
79 PLN02292 ferric-chelate reduct 29.2 65 0.0014 31.5 3.7 23 97-119 203-225 (702)
80 PRK15033 tricarballylate utili 28.7 4.3E+02 0.0094 24.1 8.6 60 113-173 248-307 (389)
81 PF13903 Claudin_2: PMP-22/EMP 28.1 1.6E+02 0.0035 21.9 5.2 17 33-49 74-90 (172)
82 cd00284 Cytochrome_b_N Cytochr 27.4 3.4E+02 0.0074 22.1 8.7 58 66-123 24-95 (200)
83 PRK10179 formate dehydrogenase 27.0 3.5E+02 0.0076 22.1 13.8 134 27-165 15-176 (217)
84 PF13572 DUF4134: Domain of un 26.4 2.2E+02 0.0047 20.8 5.3 48 32-79 46-93 (98)
85 PF01794 Ferric_reduct: Ferric 26.0 2.4E+02 0.0052 19.8 6.4 66 57-122 30-98 (125)
86 PF05640 NKAIN: Na,K-Atpase In 25.1 1.5E+02 0.0033 24.5 4.7 48 106-157 5-52 (200)
87 TIGR02125 CytB-hydogenase Ni/F 24.3 3.6E+02 0.0077 21.2 10.3 26 97-122 46-71 (211)
88 COG2322 Predicted membrane pro 24.0 4E+02 0.0086 21.7 8.6 96 27-125 46-144 (177)
89 COG4244 Predicted membrane pro 23.9 2.9E+02 0.0062 22.2 5.9 97 26-128 47-147 (160)
90 TIGR00766 ribonuclease, putati 23.4 4.3E+02 0.0093 21.8 7.6 72 33-112 170-243 (263)
91 PF14752 RBP_receptor: Retinol 23.0 7E+02 0.015 24.2 11.0 54 71-124 435-490 (617)
92 TIGR02484 CitB CitB domain pro 21.8 6.1E+02 0.013 23.0 8.6 40 113-153 228-267 (372)
93 TIGR01583 formate-DH-gamm form 21.7 4.2E+02 0.0092 21.2 7.6 65 59-123 103-171 (204)
94 PRK13554 fumarate reductase cy 21.6 5E+02 0.011 21.9 8.3 103 60-164 24-149 (241)
95 MTH00153 COX1 cytochrome c oxi 21.3 4.8E+02 0.01 24.6 7.8 41 57-105 372-413 (511)
96 MTH00183 COX1 cytochrome c oxi 20.9 3.4E+02 0.0073 25.6 6.7 59 58-124 375-438 (516)
97 PF13630 SdpI: SdpI/YhfL prote 20.7 2.6E+02 0.0056 18.3 5.9 28 96-123 20-47 (76)
98 PF10329 DUF2417: Region of un 20.7 2.2E+02 0.0048 24.0 5.0 48 33-86 104-151 (232)
99 PF10856 DUF2678: Protein of u 20.5 3.6E+02 0.0079 20.5 5.6 51 63-122 30-80 (118)
100 TIGR02848 spore_III_AC stage I 20.2 1.3E+02 0.0028 20.5 2.8 44 41-84 10-55 (64)
No 1
>PLN02810 carbon-monoxide oxygenase
Probab=100.00 E-value=2.3e-58 Score=381.56 Aligned_cols=177 Identities=82% Similarity=1.348 Sum_probs=171.8
Q ss_pred CeeehhhHhhhHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccchhhHHHHHHHHHHHHHhh
Q 030438 1 MLIGLIIIGGEAIMSYKGLNLRKEVKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWL 80 (177)
Q Consensus 1 M~~gfv~l~~eaiL~~r~~~~~~~~~k~iH~~l~~~a~~~~~iGl~av~~~~~~~~~~hf~SlHswlGl~t~~L~~lQ~~ 80 (177)
|++||+++++|||++||..|.+|+.+|.+|+.+|.+|++|+++|++++|+|||++++|||||+|||+|++|+++|.+||+
T Consensus 54 Mv~Gfi~l~geAIL~Yr~~~~~k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~~i~nlySLHSWlGl~tv~Lf~lQw~ 133 (231)
T PLN02810 54 MLIGLIIIGGEAIMSYKSLPLKKEVKKLIHLVLHAIALILGIFGICAAFKNHNESGIANLYSLHSWLGIGIISLYGIQWI 133 (231)
T ss_pred HHHHHHHHhhHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhheecCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHHHHHHHhhh
Q 030438 81 YGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTFLENSGLAKYGSEALLVNFTAVITILYGAFVIF 160 (177)
Q Consensus 81 ~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~l~~~t~~lGl~ek~~f~~~~~~~~~~~e~~~~n~~gl~~~~~~~~v~~ 160 (177)
.|++.|++|+.+++.|++++|+|+++|+.+|+++++|+++|+.||++|.++++|+++++|++++|++|+++++||++|++
T Consensus 134 ~Gf~~Fl~P~~~~~~R~~~lP~Hv~~Gl~if~LAiata~lGi~EKl~Fl~~~~~~~~~~Ea~lvN~~Glliv~fg~~V~~ 213 (231)
T PLN02810 134 YGFIVFFFPGGSTNLRSGSLPWHVLFGLFVYILAVGNAALGFLEKLTFLESGGLDKYGSEALLVNFTAIITILYGAFVVL 213 (231)
T ss_pred HHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998878999999999999999999999999999
Q ss_pred hccccCCC-CCCCCCCCC
Q 030438 161 SVASQGPA-EDDYSYSAI 177 (177)
Q Consensus 161 ~~~~~~~~-~~~~~~~~~ 177 (177)
.++.+.|+ +||+.|+++
T Consensus 214 ~~~~~~~~~~~~~~~~~~ 231 (231)
T PLN02810 214 TALAQSPSDEDDYSYSAI 231 (231)
T ss_pred hhccCCCCCCCccccccC
Confidence 99999886 888999874
No 2
>PLN02680 carbon-monoxide oxygenase
Probab=100.00 E-value=1.5e-54 Score=360.24 Aligned_cols=171 Identities=47% Similarity=0.931 Sum_probs=164.8
Q ss_pred CeeehhhHhhhHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccchhhHHHHHHHHHHHHHhh
Q 030438 1 MLIGLIIIGGEAIMSYKGLNLRKEVKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWL 80 (177)
Q Consensus 1 M~~gfv~l~~eaiL~~r~~~~~~~~~k~iH~~l~~~a~~~~~iGl~av~~~~~~~~~~hf~SlHswlGl~t~~L~~lQ~~ 80 (177)
|++||+++++||||+||+.|.+|+.+|++|+.+|.+|++|+++|+++++++||++++|||||+|||+|++|+++|.+||+
T Consensus 54 M~~Gfi~l~geAIL~yr~~~~~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~~~~nfySlHSWlGl~t~iL~~lQ~~ 133 (232)
T PLN02680 54 MVIGLVLLNGEAMLAYKTVPGTKNLKKLVHLTLQFLAFCLSLIGVWAALKFHNEKGIDNFYSLHSWLGLACLFLFSLQWA 133 (232)
T ss_pred HHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccccHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhheecCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCCCChhhHHHHHHHHHHHHHHHHhh
Q 030438 81 YGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTFLENS-GLAKYGSEALLVNFTAVITILYGAFVI 159 (177)
Q Consensus 81 ~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~l~~~t~~lGl~ek~~f~~~~-~~~~~~~e~~~~n~~gl~~~~~~~~v~ 159 (177)
.|+.+|++|+.+++.|++++|+|+++|+++|+++++|+.+|+.||.+|.+++ +|+++++|++++|++|+++++||++|+
T Consensus 134 ~Gf~~f~~P~~~~~~R~~~~p~H~~~G~~if~LaiaT~~lG~~Ek~~f~~~~~~~~~~~~e~~lvN~~gl~~~~fg~~V~ 213 (232)
T PLN02680 134 AGFVTFWYPGGSRNSRASLLPWHVFFGIYIYALAVATATTGILEKATFLQSNKVISRYSTEAMLVNSLGILIVVLGGFVI 213 (232)
T ss_pred HHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCCCchhhhHhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998754 789999999999999999999999999
Q ss_pred hhccccCCCCCC
Q 030438 160 FSVASQGPAEDD 171 (177)
Q Consensus 160 ~~~~~~~~~~~~ 171 (177)
+.++.|.+.++|
T Consensus 214 ~~v~~p~~~~~~ 225 (232)
T PLN02680 214 LAIVTPLNGKGD 225 (232)
T ss_pred Hhhccccccccc
Confidence 999999885554
No 3
>PLN02351 cytochromes b561 family protein
Probab=100.00 E-value=6.5e-54 Score=357.35 Aligned_cols=174 Identities=42% Similarity=0.753 Sum_probs=162.6
Q ss_pred CeeehhhHhhhHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccccC-CCCccchhhHHHHHHHHHHHHHh
Q 030438 1 MLIGLIIIGGEAIMSYKGLNLRKEVKKVIHLVLHAIALILGIIGIYAAFKYHNESA-IVNLYSLHSWLGIAVISLYGIQW 79 (177)
Q Consensus 1 M~~gfv~l~~eaiL~~r~~~~~~~~~k~iH~~l~~~a~~~~~iGl~av~~~~~~~~-~~hf~SlHswlGl~t~~L~~lQ~ 79 (177)
|++||++++||||++||.+|.+|+.+|.+|+.+|.+|++|+++|+++ ++||+.+ +|||||+|||+|++|+++|++||
T Consensus 58 MviGfi~L~geAILvYR~~~~~~k~~K~lH~~Lh~~Ali~~vvGl~a--~fh~~~~~i~nlySLHSWlGl~tv~Lf~lQw 135 (242)
T PLN02351 58 MVIGFILISGEAILVHRWLPGSRKTKKSVHLWLQGLALASGVFGIWT--KFHGQDGIVANFYSLHSWMGLICVSLFGAQW 135 (242)
T ss_pred HHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHH--HHhcccCCccchhHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999888889999999999999999999999 7777765 69999999999999999999999
Q ss_pred hhhhhhheecCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCCChhhHHHHHHHHHHHHHHHHh
Q 030438 80 LYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTFLEN-SGLAKYGSEALLVNFTAVITILYGAFV 158 (177)
Q Consensus 80 ~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~l~~~t~~lGl~ek~~f~~~-~~~~~~~~e~~~~n~~gl~~~~~~~~v 158 (177)
+.|+.+|++|+.+.+.|++++|+|+++|+++|+++++|+++|+.||.+|.++ ++|+++++|++++|++|+++++||++|
T Consensus 136 v~Gf~~F~~P~~~~~~Ra~~~P~Hv~~Gl~if~LaiaTa~lGl~EKl~F~~~~~~y~~~~~Ea~lvN~~Glliv~fG~~V 215 (242)
T PLN02351 136 LTGFMSFWHRGEMRTTRTTVLPWHVFLGLYTYGLAVATAETGLLEKLTFLQTKRNVSKHGSESMVVNGLGLGLALLSGIV 215 (242)
T ss_pred HHHHHHHhcCCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccCCchhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999975 378999999999999999999999999
Q ss_pred hhhccccCC--CCCCCCCCC
Q 030438 159 IFSVASQGP--AEDDYSYSA 176 (177)
Q Consensus 159 ~~~~~~~~~--~~~~~~~~~ 176 (177)
++.+++|+. +|+...|+.
T Consensus 216 v~~~~~p~~kr~~~~~~~~~ 235 (242)
T PLN02351 216 ILAAVLPKYQSHSSKLVYSS 235 (242)
T ss_pred HHhhcCccccCCCccCCccc
Confidence 999999954 444567753
No 4
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=6.9e-53 Score=347.53 Aligned_cols=166 Identities=42% Similarity=0.802 Sum_probs=160.4
Q ss_pred CeeehhhHhhhHHHhhcccc-cccchhHHHHHHHHHHHHHHHHHHHHHHhhhcccc--CCCCccchhhHHHHHHHHHHHH
Q 030438 1 MLIGLIIIGGEAIMSYKGLN-LRKEVKKVIHLVLHAIALILGIIGIYAAFKYHNES--AIVNLYSLHSWLGIAVISLYGI 77 (177)
Q Consensus 1 M~~gfv~l~~eaiL~~r~~~-~~~~~~k~iH~~l~~~a~~~~~iGl~av~~~~~~~--~~~hf~SlHswlGl~t~~L~~l 77 (177)
|++||+++++|||++||+.| .+|+.+|.+|+.+|.+|++|+++|++++|++||++ ++|||||+|||+|++|++++++
T Consensus 31 M~~Gfi~l~geAiLvyr~~~~~~k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHSwlGl~t~~L~~l 110 (214)
T cd08764 31 MVLGLIFLYGNSILVYRVFRNTRKKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHSWLGLTAVILFSL 110 (214)
T ss_pred HHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHHHHHH
Confidence 88999999999999999988 67788899999999999999999999999999998 9999999999999999999999
Q ss_pred HhhhhhhhheecCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHHHHHHH
Q 030438 78 QWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTFLENSGLAKYGSEALLVNFTAVITILYGAF 157 (177)
Q Consensus 78 Q~~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~l~~~t~~lGl~ek~~f~~~~~~~~~~~e~~~~n~~gl~~~~~~~~ 157 (177)
||+.|+++|++|+.+++.|++++|+|+++|+++|+++++|+.+|+.||.+|.++ +|+++++|++++|++|+++++||++
T Consensus 111 Q~~~Gf~~fl~P~~~~~~r~~~~p~H~~~Gl~~fvLaiaT~~lGl~ek~~f~~~-~~~~~~~e~~l~N~~gl~~~~fg~~ 189 (214)
T cd08764 111 QWVGGFVSFLFPGLPETLRAAYLPLHVFFGLFIFVLAVATALLGITEKAFFSLN-KYSNLPAEGVLGNFIGIVLVIFGGL 189 (214)
T ss_pred HHHHHHHHHHhcccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccccCChhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999986 5999999999999999999999999
Q ss_pred hhhhccccCC
Q 030438 158 VIFSVASQGP 167 (177)
Q Consensus 158 v~~~~~~~~~ 167 (177)
|++++++|+.
T Consensus 190 V~~~~~~~~~ 199 (214)
T cd08764 190 VVYLVTEPDY 199 (214)
T ss_pred HHHhccCccc
Confidence 9999999955
No 5
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=100.00 E-value=8.7e-53 Score=348.49 Aligned_cols=167 Identities=48% Similarity=0.866 Sum_probs=163.0
Q ss_pred CeeehhhHhhhHHHhhcccc-cccchhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccchhhHHHHHHHHHHHHHh
Q 030438 1 MLIGLIIIGGEAIMSYKGLN-LRKEVKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQW 79 (177)
Q Consensus 1 M~~gfv~l~~eaiL~~r~~~-~~~~~~k~iH~~l~~~a~~~~~iGl~av~~~~~~~~~~hf~SlHswlGl~t~~L~~lQ~ 79 (177)
|++|||+++|||+|+||.+| .+|+.+|.+|..+|.+|++++++|++++|++||+++++||||+|||+|++++++|.+||
T Consensus 62 MviGfI~l~GeAiL~YR~~r~~~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~i~NfySLHSWlGl~~v~ly~~Q~ 141 (245)
T KOG1619|consen 62 MVIGFIYLQGEAILIYRVFRYTSKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVGIANFYSLHSWLGLCVVILYSLQW 141 (245)
T ss_pred HHHHHHHhccceeeeeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccceeeHHHHHHHHHHHHHHHHH
Confidence 89999999999999999988 89999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhheecCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 030438 80 LYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTFLENSGLAKYGSEALLVNFTAVITILYGAFVI 159 (177)
Q Consensus 80 ~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~l~~~t~~lGl~ek~~f~~~~~~~~~~~e~~~~n~~gl~~~~~~~~v~ 159 (177)
+.||.+|++|+.+++.|++++|+|+++|+.+|+++++|+++|+.||++|.+.++++.+++|++++|++|+++++||++|+
T Consensus 142 v~GF~tfl~pg~~~~~Rs~lmP~H~~~Gl~~f~lai~ta~~Gl~ek~~f~~~~~~s~~~~e~~l~n~~gv~~il~g~~Vl 221 (245)
T KOG1619|consen 142 VFGFFTFLFPGSPESYRSRLMPWHVFLGLAIFILAIVTALTGLLEKLTFLCFGDLSTKNPEGYLVNFLGVFIILFGVLVL 221 (245)
T ss_pred HHHHHHHhcCCCCccHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCHHHHHHHHHHHHHHHHHHHhe
Confidence 99999999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred hhccccCC
Q 030438 160 FSVASQGP 167 (177)
Q Consensus 160 ~~~~~~~~ 167 (177)
+.+++|+.
T Consensus 222 ~~v~~~~~ 229 (245)
T KOG1619|consen 222 TLVTPPPW 229 (245)
T ss_pred EEEecCCC
Confidence 99998866
No 6
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=6.8e-46 Score=289.81 Aligned_cols=130 Identities=61% Similarity=1.142 Sum_probs=126.7
Q ss_pred CeeehhhHhhhHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccchhhHHHHHHHHHHHHHhh
Q 030438 1 MLIGLIIIGGEAIMSYKGLNLRKEVKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWL 80 (177)
Q Consensus 1 M~~gfv~l~~eaiL~~r~~~~~~~~~k~iH~~l~~~a~~~~~iGl~av~~~~~~~~~~hf~SlHswlGl~t~~L~~lQ~~ 80 (177)
|++||+++|+|||++||..|.+|+.+|++|+.+|.+|++|+++|++++|+|||++++|||||+|||+|++|++++++||+
T Consensus 15 M~~gfi~l~~eAiL~~r~~~~~k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~~~~~~~SlHSwlGl~t~~L~~lQ~~ 94 (144)
T cd08766 15 MVIGFIFLAGEAILAYKTVPGSREVQKAVHLTLHLVALVLGIVGIYAAFKFHNEVGIPNLYSLHSWLGIGTISLFGLQWL 94 (144)
T ss_pred HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhheecCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030438 81 YGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTFLE 130 (177)
Q Consensus 81 ~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~l~~~t~~lGl~ek~~f~~ 130 (177)
.|+.+|++|+.+++.|++++|+|+++|+++|+++++|+++|+.||.+|.+
T Consensus 95 ~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~~~la~~t~~lGl~ek~~f~~ 144 (144)
T cd08766 95 FGFVTFWFPGASRNTRAALLPWHVFLGLAIYYLAIATAETGLLEKLTFLQ 144 (144)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999889999999999999999999999999999999999864
No 7
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=100.00 E-value=1.9e-45 Score=289.45 Aligned_cols=131 Identities=41% Similarity=0.706 Sum_probs=125.9
Q ss_pred CeeehhhHhhhHHHhhcccc---cccchhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccchhhHHHHHHHHHHHH
Q 030438 1 MLIGLIIIGGEAIMSYKGLN---LRKEVKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGI 77 (177)
Q Consensus 1 M~~gfv~l~~eaiL~~r~~~---~~~~~~k~iH~~l~~~a~~~~~iGl~av~~~~~~~~~~hf~SlHswlGl~t~~L~~l 77 (177)
|++||+++++||||+||..+ .+|+.+|++|+.+|.+|++|+++|++++|+|||++++|||||+|||+|++|++++++
T Consensus 19 m~~Gfi~l~geAiL~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~~~~~fySlHSwlGl~t~~l~~l 98 (153)
T cd08765 19 MVIGFIFIQGIAIIVYRLPWTWKCSKLLMKLIHAGLHILAFILAIISVVAVFVFHNAKNIPNMYSLHSWVGLAAVILYPL 98 (153)
T ss_pred HHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHHHHHHHHHHHHH
Confidence 78999999999999999654 468999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhheecCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 030438 78 QWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTFLEN 131 (177)
Q Consensus 78 Q~~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~l~~~t~~lGl~ek~~f~~~ 131 (177)
||+.|+.+|++|+.+.+.|++++|+|+++|+++|+|+++|+++|+.||.+|..+
T Consensus 99 Q~~~Gf~~f~~P~~~~~~r~~~~p~H~~~G~~i~~Lai~t~~lG~~ek~~f~~~ 152 (153)
T cd08765 99 QLVLGISVYLLPVAPVRLRAALMPLHVYSGLFIFGTVIATALMGITEKLIFSLK 152 (153)
T ss_pred HHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999998899999999999999999999999999999999999763
No 8
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=5e-45 Score=292.90 Aligned_cols=132 Identities=37% Similarity=0.653 Sum_probs=127.3
Q ss_pred CeeehhhHhhhHHHhhcccc---cccchhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccchhhHHHHHHHHHHHH
Q 030438 1 MLIGLIIIGGEAIMSYKGLN---LRKEVKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGI 77 (177)
Q Consensus 1 M~~gfv~l~~eaiL~~r~~~---~~~~~~k~iH~~l~~~a~~~~~iGl~av~~~~~~~~~~hf~SlHswlGl~t~~L~~l 77 (177)
|++||+++++|||++||..| .+|+.+|.+|+.+|.+|++|+++|++++|+|||++++|||||+|||+|++|+++|.+
T Consensus 42 Mv~Gfi~L~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~~~~nlySlHSWlGl~t~~Lf~l 121 (179)
T cd08762 42 MVTGMVVLYGNAALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVHHTANLYSLHSWVGICTVALFTC 121 (179)
T ss_pred HHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHHHHHHHHHHHH
Confidence 89999999999999999766 378889999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhheecCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 030438 78 QWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTFLENS 132 (177)
Q Consensus 78 Q~~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~l~~~t~~lGl~ek~~f~~~~ 132 (177)
||+.|+.+|++|+.+++.|++++|+|+++|+.+|+++++|+++|+.||.+|..++
T Consensus 122 Q~~~Gf~~f~~p~~~~~~ra~~~p~H~~~G~~if~Laiat~~lGl~ek~~f~~~~ 176 (179)
T cd08762 122 QWVMGFTSFLLPWAPMWLRALVKPIHVFFGAMILVLSIASCISGINEKLFFSLKN 176 (179)
T ss_pred HHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999998754
No 9
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=8.8e-44 Score=277.61 Aligned_cols=129 Identities=40% Similarity=0.808 Sum_probs=125.2
Q ss_pred CeeehhhHhhhHHHhhcccc-cccchhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccchhhHHHHHHHHHHHHHh
Q 030438 1 MLIGLIIIGGEAIMSYKGLN-LRKEVKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQW 79 (177)
Q Consensus 1 M~~gfv~l~~eaiL~~r~~~-~~~~~~k~iH~~l~~~a~~~~~iGl~av~~~~~~~~~~hf~SlHswlGl~t~~L~~lQ~ 79 (177)
|++||+++++||+++||..| .+|+.+|++|+.+|.+|++|+++|+.++++|||++++|||||+|||+|++|++++.+||
T Consensus 14 m~~G~i~l~geaiL~~~~~~~~~k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~~~~hf~SlHswlGl~t~~L~~lQ~ 93 (143)
T cd08763 14 MVLGLVFLCGEALLVYRVFRNETKRSTKILHGLLHIMALVISLVGLVAVFDYHQANGYPDMYSLHSWCGILTFVLYFLQW 93 (143)
T ss_pred HHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHHHHHHHHHHHHHHH
Confidence 78999999999999999988 68899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhheecCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030438 80 LYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTFL 129 (177)
Q Consensus 80 ~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~l~~~t~~lGl~ek~~f~ 129 (177)
+.|+.+|++|+.+++.|++++|+|+++|+++|+++++|+.+|+.||++|+
T Consensus 94 ~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~f~la~~t~~lG~~ek~~f~ 143 (143)
T cd08763 94 LIGFSFFLFPGASFTLRSQYKPLHEFFGRALFLSSVGTSLLGLTEKLLFN 143 (143)
T ss_pred HHHHHHHHcCCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999998999999999999999999999999999999998873
No 10
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=99.97 E-value=2.3e-31 Score=202.99 Aligned_cols=122 Identities=43% Similarity=0.872 Sum_probs=116.1
Q ss_pred CeeehhhHhhhHHHhhcccc-cccchhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccchhhHHHHHHHHHHHHHh
Q 030438 1 MLIGLIIIGGEAIMSYKGLN-LRKEVKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQW 79 (177)
Q Consensus 1 M~~gfv~l~~eaiL~~r~~~-~~~~~~k~iH~~l~~~a~~~~~iGl~av~~~~~~~~~~hf~SlHswlGl~t~~L~~lQ~ 79 (177)
|++||+++++||++++|..| .+|+.++++|+.+|.++++++++|+.+++++|++++++||+|+|||+|+++++++++|+
T Consensus 9 m~~g~~~l~~~~il~~r~~~~~~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~~~~~~h~~s~Hs~lGl~~~~l~~~q~ 88 (131)
T cd08554 9 MVIGFVFLMGEALLVYRVFRLLTKRALKLLHAILHLLAFVLGLVGLLAVFLFHNAGGIANLYSLHSWLGLATVLLFLLQF 88 (131)
T ss_pred HHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHHHH
Confidence 78999999999999999977 67889999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhheecCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHH
Q 030438 80 LYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGF 122 (177)
Q Consensus 80 ~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~l~~~t~~lGl 122 (177)
+.|+..++.|+.+++.|+.++++|+++|+++++++++|+.+|+
T Consensus 89 ~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~t~~~G~ 131 (131)
T cd08554 89 LSGFVLFLLPLLRLSYRSSLLPFHRFFGLAIFVLAIATILLGI 131 (131)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999876667899999999999999999999999984
No 11
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=99.97 E-value=1.8e-30 Score=198.42 Aligned_cols=128 Identities=34% Similarity=0.515 Sum_probs=120.8
Q ss_pred CeeehhhHhhhHHHhhcc--cc-cccchhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccchhhHHHHHHHHHHHH
Q 030438 1 MLIGLIIIGGEAIMSYKG--LN-LRKEVKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGI 77 (177)
Q Consensus 1 M~~gfv~l~~eaiL~~r~--~~-~~~~~~k~iH~~l~~~a~~~~~iGl~av~~~~~~~~~~hf~SlHswlGl~t~~L~~l 77 (177)
|++||+++++||++++|. .+ .+|+.++++|+.+|.++++++++|+.+++.+|++++++||+|+|+|+|+++++++.+
T Consensus 6 m~~~f~~l~~~~il~~r~~~~~~~~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~~~~h~~s~H~~lG~~~~~l~~~ 85 (137)
T PF03188_consen 6 MTIGFVFLMPEGILAARYNPFRRKSRKWWFRIHWILQVLALVFAIIGFVAIFINKNRNGKPHFKSWHSILGLATFVLALL 85 (137)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCchhhhhHHHHHHHHH
Confidence 789999999999999996 33 478888999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhheecCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030438 78 QWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTF 128 (177)
Q Consensus 78 Q~~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~l~~~t~~lGl~ek~~f 128 (177)
|++.|++.++.|+.+++.|+.+.++|+++|+++++++++|+.+|+.|+..|
T Consensus 86 Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~G~~~~~~f 136 (137)
T PF03188_consen 86 QPLLGFFRFFMPGLPRKRRPIWNKWHRWLGYLIYVLAIATIFLGLTEKAWF 136 (137)
T ss_pred HHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999989877778999999999999999999999999999888776
No 12
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.97 E-value=1.1e-30 Score=209.97 Aligned_cols=126 Identities=23% Similarity=0.413 Sum_probs=116.9
Q ss_pred CeeehhhHhhhHHHhhcccc----cccchhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccchhhHHHHHHHHHHH
Q 030438 1 MLIGLIIIGGEAIMSYKGLN----LRKEVKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYG 76 (177)
Q Consensus 1 M~~gfv~l~~eaiL~~r~~~----~~~~~~k~iH~~l~~~a~~~~~iGl~av~~~~~~~~~~hf~SlHswlGl~t~~L~~ 76 (177)
|++||+++++||++.+|..+ .+|+.++++|+.+|.++++++++|+.++++||++++++||+|+|||+|+++++++.
T Consensus 28 m~i~~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~~~~~~~~~~hf~s~H~~lGl~~~~l~~ 107 (183)
T cd08761 28 MSLGFLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIYYNKERNGKPHFTSWHGILGLVTVILIV 107 (183)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHH
Confidence 78999999999999998643 27888899999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhheecCCCC--CcccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030438 77 IQWLYGFVIFFYPGGST--GLRSESLPWHVLFGLFVYILAVANAAIGFLEKL 126 (177)
Q Consensus 77 lQ~~~G~~~fl~p~~~~--~~r~~~~p~H~~~G~~~~~l~~~t~~lGl~ek~ 126 (177)
+|++.|+..++.|...+ +.|+.++++|+++|+++++++++|+.+|++|++
T Consensus 108 ~Q~~~G~~~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~~~ 159 (183)
T cd08761 108 LQALGGLALLYPPGLRRGESKAKKLKKYHRLSGYVAYLLGLATLVLGLETRW 159 (183)
T ss_pred HHHHHhHHHHhhHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 99999999998887654 678889999999999999999999999999843
No 13
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=99.96 E-value=4e-30 Score=195.98 Aligned_cols=122 Identities=43% Similarity=0.750 Sum_probs=114.1
Q ss_pred CeeehhhHhhhHHHhhcc-cc-cccchhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccchhhHHHHHHHHHHHHH
Q 030438 1 MLIGLIIIGGEAIMSYKG-LN-LRKEVKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQ 78 (177)
Q Consensus 1 M~~gfv~l~~eaiL~~r~-~~-~~~~~~k~iH~~l~~~a~~~~~iGl~av~~~~~~~~~~hf~SlHswlGl~t~~L~~lQ 78 (177)
|++||+++++||++++|. .+ .+|+.++.+|+.+|.++++|+++|+++++++|++++++||+|+|||+|+++++++++|
T Consensus 6 m~~~f~~l~p~gil~~r~~~~~~~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~~~~~~~s~H~~lGl~~~~l~~~Q 85 (129)
T smart00665 6 MILGFGFLMGEAILVARPLTRFLSKPTWFLLHVVLQILALVLGVIGLLAIFISHNESGIANFYSLHSWLGLAAFVLAGLQ 85 (129)
T ss_pred HHHHHHHHHHHHHHHhhhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCccchhHHHHHHHHHHHHHH
Confidence 789999999999999995 44 5788899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhheecCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHH
Q 030438 79 WLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGF 122 (177)
Q Consensus 79 ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~l~~~t~~lGl 122 (177)
++.|+..+..|+.+.+.|+.++++|+++|+++++++++|+.+|+
T Consensus 86 ~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~~~~lG~ 129 (129)
T smart00665 86 WLSGFLRPLPPGLPSKYRSYLNPYHRFVGLAAFILAIVTIFLGL 129 (129)
T ss_pred HHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 99999998877766667889999999999999999999999985
No 14
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.89 E-value=5.2e-22 Score=160.25 Aligned_cols=120 Identities=26% Similarity=0.220 Sum_probs=108.8
Q ss_pred CeeehhhHhhhHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccchhhHHHHHHHHHHHHHhh
Q 030438 1 MLIGLIIIGGEAIMSYKGLNLRKEVKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWL 80 (177)
Q Consensus 1 M~~gfv~l~~eaiL~~r~~~~~~~~~k~iH~~l~~~a~~~~~iGl~av~~~~~~~~~~hf~SlHswlGl~t~~L~~lQ~~ 80 (177)
|+++|.+++++|++.+|.++.+++.+.++|+.+|.++++++++|+.+++.++ +.+.+|++|.|+|+|++++++..+|++
T Consensus 43 m~iaw~~l~p~gil~ar~~~~~~~~~~~~H~~~q~~~~~~~i~g~~~~~~~~-~~~~~~~~~~H~~lGl~~~~l~~lQ~~ 121 (191)
T cd08760 43 MAIAWGILMPIGALLARYFLLGDPVWFYLHAGLQLLAVLLAIAGFVLGIVLV-QGGGGSLNNAHAILGIIVLALAILQPL 121 (191)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCCcCcchhhhHHHHHHHHHHHH
Confidence 7899999999999999976556778889999999999999999999999998 567899999999999999999999999
Q ss_pred hhhhhheecCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 030438 81 YGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLE 124 (177)
Q Consensus 81 ~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~l~~~t~~lGl~e 124 (177)
.|++ .|...++.|+...++|+++|+++++++++|+.+|+.+
T Consensus 122 ~G~~---~~~~~~~~R~~~~~~H~~~G~~~~~l~~v~i~~G~~~ 162 (191)
T cd08760 122 LGLL---RPHPGSKKRSIWNWAHRWLGRAALILAIVNIFLGLDL 162 (191)
T ss_pred HHHh---cCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9994 4554555788889999999999999999999999985
No 15
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=98.11 E-value=1e-05 Score=60.22 Aligned_cols=77 Identities=19% Similarity=0.341 Sum_probs=63.1
Q ss_pred CeeehhhHhhhHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCc--cchhhHHHHHHHHHHHHH
Q 030438 1 MLIGLIIIGGEAIMSYKGLNLRKEVKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNL--YSLHSWLGIAVISLYGIQ 78 (177)
Q Consensus 1 M~~gfv~l~~eaiL~~r~~~~~~~~~k~iH~~l~~~a~~~~~iGl~av~~~~~~~~~~hf--~SlHswlGl~t~~L~~lQ 78 (177)
|+++|++++|-+++.-+ .+ .+.|...|++++++.++|+.....++++. ||+ .+.|+.+|.+.+++..+|
T Consensus 25 m~la~~il~Pi~lvL~~-~~------sr~~~~~q~~~~~l~~~g~~~g~~~~~~~--p~lyp~n~H~k~g~il~~l~~~q 95 (105)
T PF10348_consen 25 MTLAWVILYPIGLVLGN-AR------SRWHLPVQTVFLVLMILGLFLGSVYNGST--PDLYPNNAHGKMGWILFVLMIVQ 95 (105)
T ss_pred HHHHHHHHHHHHHHHHH-cc------chHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCCCCHHHHHHHHHHHHHHHH
Confidence 67889999999977543 22 23599999999999999999987766543 455 889999999999999999
Q ss_pred hhhhhhhh
Q 030438 79 WLYGFVIF 86 (177)
Q Consensus 79 ~~~G~~~f 86 (177)
++.|++.-
T Consensus 96 ~~~gv~~~ 103 (105)
T PF10348_consen 96 VILGVILK 103 (105)
T ss_pred HHHHHHHH
Confidence 99999653
No 16
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=97.27 E-value=0.0065 Score=45.90 Aligned_cols=124 Identities=19% Similarity=0.128 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHH-HHHHHHHHhhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhhheecCCCCCcccchhhHHHHHH
Q 030438 29 IHLVLHAIALIL-GIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFG 107 (177)
Q Consensus 29 iH~~l~~~a~~~-~~iGl~av~~~~~~~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G 107 (177)
.|..+..+++++ .-.|+...-...+..+++....+|-++.++++++.+.-...++... ....++.+...|.++|
T Consensus 1 ~H~~lm~~~f~~l~p~gil~~r~~~~~~~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~-----~~~~~~~~~s~H~~lG 75 (129)
T smart00665 1 LHPVLMILGFGFLMGEAILVARPLTRFLSKPTWFLLHVVLQILALVLGVIGLLAIFISH-----NESGIANFYSLHSWLG 75 (129)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cccCCCCccchhHHHH
Confidence 489999999955 4455555432133345677889999999999998887777666432 1222355777999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 030438 108 LFVYILAVANAAIGFLEKLTFLENSGLAKYGSEALLVNFTAVITILYGAFVI 159 (177)
Q Consensus 108 ~~~~~l~~~t~~lGl~ek~~f~~~~~~~~~~~e~~~~n~~gl~~~~~~~~v~ 159 (177)
++++++...+...|+... +....+.+..+.-...=..+|.++.+.+.+-+
T Consensus 76 l~~~~l~~~Q~~~G~~~~--~~~~~~~~~r~~~~~~H~~~G~~~~~la~~~~ 125 (129)
T smart00665 76 LAAFVLAGLQWLSGFLRP--LPPGLPSKYRSYLNPYHRFVGLAAFILAIVTI 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHh--cCCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999731 11100001001001111277888777775544
No 17
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=97.13 E-value=0.016 Score=43.79 Aligned_cols=92 Identities=21% Similarity=0.332 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhhhc-cccCCCCccchhhHHHHHHHHHHHHHhhhhhhhheecCCCCCcccchhhHHHHH
Q 030438 29 IHLVLHAIALILGI-IGIYAAFKYH-NESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLF 106 (177)
Q Consensus 29 iH~~l~~~a~~~~~-iGl~av~~~~-~~~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~ 106 (177)
.|.+++.+|+.+.. .|+.+...++ +..+++.....|..+-++.+++..+=....+... ..+.++.+.-+|.+.
T Consensus 1 ~H~~lm~~~f~~l~~~~il~~r~~~~~~~~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~~-----~~~~~~h~~s~H~~l 75 (137)
T PF03188_consen 1 WHPILMTIGFVFLMPEGILAARYNPFRRKSRKWWFRIHWILQVLALVFAIIGFVAIFINK-----NRNGKPHFKSWHSIL 75 (137)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cccCCCCCCCchhhh
Confidence 49999999998666 5665555322 2346678889999999988877776555555322 222334556699999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030438 107 GLFVYILAVANAAIGFLEK 125 (177)
Q Consensus 107 G~~~~~l~~~t~~lGl~ek 125 (177)
|.+++++.....+.|+...
T Consensus 76 G~~~~~l~~~Q~~~G~~~~ 94 (137)
T PF03188_consen 76 GLATFVLALLQPLLGFFRF 94 (137)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999854
No 18
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=97.07 E-value=0.019 Score=43.32 Aligned_cols=123 Identities=19% Similarity=0.154 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHhhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhhheecCCCCCcccchhhHHHHH
Q 030438 28 VIHLVLHAIALI-LGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLF 106 (177)
Q Consensus 28 ~iH~~l~~~a~~-~~~iGl~av~~~~~~~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~ 106 (177)
..|..++.++++ +...|+. +++.-+..+++...-+|..+..+++.+..+=...++... ..+.++.+...|.++
T Consensus 3 ~~H~~lm~~g~~~l~~~~il-~~r~~~~~~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~-----~~~~~~h~~s~Hs~l 76 (131)
T cd08554 3 NWHPLLMVIGFVFLMGEALL-VYRVFRLLTKRALKLLHAILHLLAFVLGLVGLLAVFLFH-----NAGGIANLYSLHSWL 76 (131)
T ss_pred CccHHHHHHHHHHHHHHHHH-HhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cccCcccchhHHHHH
Confidence 369999999987 4444554 444433345566778999999988887776555555321 123345667799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCh-hhHHHHHHHHHHHHHHHHhh
Q 030438 107 GLFVYILAVANAAIGFLEKLTFLENSGLAKYGS-EALLVNFTAVITILYGAFVI 159 (177)
Q Consensus 107 G~~~~~l~~~t~~lGl~ek~~f~~~~~~~~~~~-e~~~~n~~gl~~~~~~~~v~ 159 (177)
|++++++...+...|+...+. .. .-++.++ -...=..+|.++.+.+...+
T Consensus 77 Gl~~~~l~~~q~~~G~~~~~~--~~-~~~~~r~~~~~~H~~~G~~~~~la~~t~ 127 (131)
T cd08554 77 GLATVLLFLLQFLSGFVLFLL--PL-LRLSYRSSLLPFHRFFGLAIFVLAIATI 127 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--cc-ccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999975321 11 1111111 12222277777776665544
No 19
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=96.94 E-value=0.018 Score=44.95 Aligned_cols=142 Identities=16% Similarity=0.183 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh----hccccCCCCccchhhHHHHHHHHHHHHHhhhhhhh----------------
Q 030438 26 KKVIHLVLHAIALILGIIGIYAAFK----YHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVI---------------- 85 (177)
Q Consensus 26 ~k~iH~~l~~~a~~~~~iGl~av~~----~~~~~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~---------------- 85 (177)
.+..||..=..-+++...|+...+. .....+......+|-++|++.+.+..+..+.++..
T Consensus 8 ~R~~Hw~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (188)
T PF00033_consen 8 TRLLHWLNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIPQ 87 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHH
Confidence 4689999999999999999998643 22233457789999999999999999999999977
Q ss_pred -heecCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCChh--hHHH---HHHHHHHHHHHHHh
Q 030438 86 -FFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLE-KLTFLENSGLAKYGSE--ALLV---NFTAVITILYGAFV 158 (177)
Q Consensus 86 -fl~p~~~~~~r~~~~p~H~~~G~~~~~l~~~t~~lGl~e-k~~f~~~~~~~~~~~e--~~~~---n~~gl~~~~~~~~v 158 (177)
...+..+....+...+..+..-...+.+.++..++|+.- .............+++ .... +..+.+++++..+-
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~~~~~~~~~~~~~~~~~~~~~~~~~iH~~~~~ll~~~i~~H 167 (188)
T PF00033_consen 88 YRLFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLIMLWFFWWPLPPWLLPPPGLAEWARLIHFILAYLLLAFIIIH 167 (188)
T ss_dssp HHTT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHHC-----TTTTGGGS-HHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222233445566788888888899999999999874 0000000000111111 1222 26777777888788
Q ss_pred hhhccccCC
Q 030438 159 IFSVASQGP 167 (177)
Q Consensus 159 ~~~~~~~~~ 167 (177)
++.+.....
T Consensus 168 i~~a~~~~~ 176 (188)
T PF00033_consen 168 IYAAIFHHF 176 (188)
T ss_dssp HHHHHHBT-
T ss_pred HHHHHHHhh
Confidence 887776654
No 20
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=96.83 E-value=0.087 Score=41.23 Aligned_cols=94 Identities=16% Similarity=0.206 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhhheecCCCCCcccchhhHHHH
Q 030438 26 KKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVL 105 (177)
Q Consensus 26 ~k~iH~~l~~~a~~~~~iGl~av~~~~~~~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~ 105 (177)
.-..|-.++.+++++...--..+++.....+++.-.-.|.+++++++++... |+..-+.-+ .....+.+.-+|-|
T Consensus 6 ~Fn~HP~lm~~G~i~l~geaiL~~~~~~~~~k~~~k~~H~~L~~la~~~~~~----Gl~av~~~h-~~~~~~hf~SlHsw 80 (143)
T cd08763 6 QFNVHPLCMVLGLVFLCGEALLVYRVFRNETKRSTKILHGLLHIMALVISLV----GLVAVFDYH-QANGYPDMYSLHSW 80 (143)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHH----HHHHHHHHc-cccCCCccccHHHH
Confidence 3458999999999987777777776555445666778999999988887653 443322212 22345667889999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030438 106 FGLFVYILAVANAAIGFLE 124 (177)
Q Consensus 106 ~G~~~~~l~~~t~~lGl~e 124 (177)
+|++++++-..+...|+..
T Consensus 81 lGl~t~~L~~lQ~~~G~~~ 99 (143)
T cd08763 81 CGILTFVLYFLQWLIGFSF 99 (143)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999853
No 21
>KOG4293 consensus Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains [Signal transduction mechanisms]
Probab=96.80 E-value=4.1e-05 Score=68.96 Aligned_cols=117 Identities=25% Similarity=0.241 Sum_probs=94.9
Q ss_pred eehhhHhhhHHHhhcccccc---cchhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccchhhHHHHHHHHHHHHHh
Q 030438 3 IGLIIIGGEAIMSYKGLNLR---KEVKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQW 79 (177)
Q Consensus 3 ~gfv~l~~eaiL~~r~~~~~---~~~~k~iH~~l~~~a~~~~~iGl~av~~~~~~~~~~hf~SlHswlGl~t~~L~~lQ~ 79 (177)
.+..++++-+++.-|.++.. ...|-.+|...|..++++...|....-+.-++ ....-++.|.-+|+.+.++-++|+
T Consensus 221 ~sw~il~p~g~i~ary~~~~~~~~~~Wfy~H~~~~~~~~~~~~~~~~~g~~~~~~-s~~~~~~~h~~~G~~~~~l~~lQ~ 299 (403)
T KOG4293|consen 221 LSWGILFPAGAIIARYLRQKPSGDPTWFYIHRACQFTGFILGVAGFVDGLKLSNE-SDGTVYSAHTDLGIILLVLAFLQP 299 (403)
T ss_pred hhhheeccccceeEEEecccCCCCcchhhhhhhheeeEEEEEeeeeeeeEEEccC-CCceeeeecccchhHHHHHHHHHH
Confidence 34566777777777777643 67788999999999988888887776554443 456789999999999999999999
Q ss_pred hhhhhhheecCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 030438 80 LYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFL 123 (177)
Q Consensus 80 ~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~l~~~t~~lGl~ 123 (177)
+..+ +-|....+.|+..-.+|+..|+...+++++++.-|+.
T Consensus 300 ~~~l---~Rp~~~~k~R~~~nwyH~~~g~~~~~~~~~~i~~~~~ 340 (403)
T KOG4293|consen 300 LALL---LRPLPESKIRRYWNWYHHLVGRLSIILGIVNIFDGLE 340 (403)
T ss_pred HHHH---hcCCcccCceeccceeeeecCcceeeehhhHHhhhHh
Confidence 9887 4477555567777789999999999999999999986
No 22
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=96.80 E-value=0.061 Score=43.05 Aligned_cols=131 Identities=15% Similarity=0.093 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccc---cCCCCccchhhHHHHHHHHHHHHHhhhhhhhheecCCCCCcccchhhHH
Q 030438 27 KVIHLVLHAIALILGIIGIYAAFKYHNE---SAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWH 103 (177)
Q Consensus 27 k~iH~~l~~~a~~~~~iGl~av~~~~~~---~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H 103 (177)
...|..++.+++.+..-.....++..+. .+++.-..+|.++..+++.+..+=....+.. + ....++.+.-+|
T Consensus 21 f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~~~----~-~~~~~~hf~s~H 95 (183)
T cd08761 21 FSWHPLLMSLGFLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIYYN----K-ERNGKPHFTSWH 95 (183)
T ss_pred eehhHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh----c-ccCCCCCccchh
Confidence 4699999999999776666555553221 2566677899999998887766443333311 2 222345677799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHHHH-HHHHHHHHHHHHhhhhcc
Q 030438 104 VLFGLFVYILAVANAAIGFLEKLTFLENSGLAKYGSEALLVN-FTAVITILYGAFVIFSVA 163 (177)
Q Consensus 104 ~~~G~~~~~l~~~t~~lGl~ek~~f~~~~~~~~~~~e~~~~n-~~gl~~~~~~~~v~~~~~ 163 (177)
.++|.+++++.+.+...|+...+.-....+ ++..+.-...+ .+|.++.+.+.+-+..=.
T Consensus 96 ~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~-~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl 155 (183)
T cd08761 96 GILGLVTVILIVLQALGGLALLYPPGLRRG-ESKAKKLKKYHRLSGYVAYLLGLATLVLGL 155 (183)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhhHHHhcc-cccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999965432111110 11111111122 667776666655544433
No 23
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=96.74 E-value=0.023 Score=45.97 Aligned_cols=91 Identities=20% Similarity=0.182 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhhheecCCCCCcccchhhHHHHH
Q 030438 27 KVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLF 106 (177)
Q Consensus 27 k~iH~~l~~~a~~~~~iGl~av~~~~~~~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~ 106 (177)
+..|.-+-...+.+...|..-...+-..++.+=|.|.|-|.|+..+.|...+....-.. .++.++..++.|...
T Consensus 80 r~~H~~~g~~ll~~~~L~~lGG~~~~~~~~~~lf~spH~~~Gl~~~~L~~~s~al~~~i------~~g~~~~~R~lHi~l 153 (175)
T PF13301_consen 80 RDRHYRLGFALLAFMGLGALGGQLGTYRQNGKLFWSPHLWAGLAVVGLMAFSAALVPQI------QKGNRPWARRLHIYL 153 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHHcCCCCccCchHHHHHHHHHHHHHHHHHHHHH------ccCCchhHHHHHHHH
Confidence 45666555555554444433322222223334699999999999999999887665522 222355777899999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030438 107 GLFVYILAVANAAIGFL 123 (177)
Q Consensus 107 G~~~~~l~~~t~~lGl~ 123 (177)
+..+.++-...+.+|..
T Consensus 154 N~~~l~Lf~~q~itG~~ 170 (175)
T PF13301_consen 154 NSLALLLFAWQAITGWR 170 (175)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999986
No 24
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=96.43 E-value=0.16 Score=40.82 Aligned_cols=95 Identities=24% Similarity=0.271 Sum_probs=71.4
Q ss_pred ccchhHHHHHHHHHHHHHHHH-HHHHHHhhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhhheecCCCCCcccchh
Q 030438 22 RKEVKKVIHLVLHAIALILGI-IGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESL 100 (177)
Q Consensus 22 ~~~~~k~iH~~l~~~a~~~~~-iGl~av~~~~~~~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~ 100 (177)
++......|..++.+|+.+.. +|+.+.-.+ ..+.+.-.-+|..+=++++++...-...|+... .+.++...
T Consensus 31 ~~~~~~~~Hg~lm~iaw~~l~p~gil~ar~~--~~~~~~~~~~H~~~q~~~~~~~i~g~~~~~~~~------~~~~~~~~ 102 (191)
T cd08760 31 SSDTLIKAHGVLMAIAWGILMPIGALLARYF--LLGDPVWFYLHAGLQLLAVLLAIAGFVLGIVLV------QGGGGSLN 102 (191)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh------ccCCCCCc
Confidence 455667999999999998865 566554433 223344555899999988888888888887543 23345566
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 030438 101 PWHVLFGLFVYILAVANAAIGFLE 124 (177)
Q Consensus 101 p~H~~~G~~~~~l~~~t~~lGl~e 124 (177)
..|...|.+++++.+.....|+..
T Consensus 103 ~~H~~lGl~~~~l~~lQ~~~G~~~ 126 (191)
T cd08760 103 NAHAILGIIVLALAILQPLLGLLR 126 (191)
T ss_pred CcchhhhHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999954
No 25
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=95.51 E-value=0.38 Score=40.13 Aligned_cols=110 Identities=17% Similarity=0.133 Sum_probs=71.0
Q ss_pred HHHhhcc-ccc-ccchhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhhheec
Q 030438 12 AIMSYKG-LNL-RKEVKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYP 89 (177)
Q Consensus 12 aiL~~r~-~~~-~~~~~k~iH~~l~~~a~~~~~iGl~av~~~~~~~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~fl~p 89 (177)
-.+.||- +.+ ++...-..|-.++.+++++...=-..+++.-...++..-...|.++.++++++...=...-+-.+
T Consensus 7 W~~~~rgG~~~~~~~~~Fn~HP~lM~~Gfi~l~geAiLvyr~~~~~~k~~~k~~H~~L~~lAl~~~ivGl~avf~~h--- 83 (214)
T cd08764 7 WLGKFRGGFSWTGPGLQFNWHPLLMVLGLIFLYGNSILVYRVFRNTRKKRLKLLHAVLHLLAFILAVIGLKAVFDSH--- 83 (214)
T ss_pred hHHHcCCccccCCCCceEeecHHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 4456673 222 22223478999999999765544444555332223444677999999988887664322222111
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 030438 90 GGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLE 124 (177)
Q Consensus 90 ~~~~~~r~~~~p~H~~~G~~~~~l~~~t~~lGl~e 124 (177)
.......+.+.-+|-|+|+.++++-..+...|+..
T Consensus 84 n~~~~~~~hfySlHSwlGl~t~~L~~lQ~~~Gf~~ 118 (214)
T cd08764 84 NLAKPPIPNMYSLHSWLGLTAVILFSLQWVGGFVS 118 (214)
T ss_pred hcccCCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 11212445677799999999999999999999964
No 26
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=95.14 E-value=0.016 Score=35.18 Aligned_cols=31 Identities=35% Similarity=0.557 Sum_probs=26.0
Q ss_pred CccchhhHHHHHHHHHHHHHhhhhhhhheec
Q 030438 59 NLYSLHSWLGIAVISLYGIQWLYGFVIFFYP 89 (177)
Q Consensus 59 hf~SlHswlGl~t~~L~~lQ~~~G~~~fl~p 89 (177)
.+..+|.|+|+++-.++++-.+.|.+..+.|
T Consensus 3 ~~~~~H~W~Gl~~g~~l~~~~~tG~~~~f~~ 33 (37)
T PF13706_consen 3 ILRKLHRWLGLILGLLLFVIFLTGAVMVFRD 33 (37)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4678899999999999999999998776654
No 27
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=94.90 E-value=1 Score=34.92 Aligned_cols=142 Identities=14% Similarity=0.122 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCc--cchhhHHHHHHHHHHHHHhhhh------------------hhh
Q 030438 26 KKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNL--YSLHSWLGIAVISLYGIQWLYG------------------FVI 85 (177)
Q Consensus 26 ~k~iH~~l~~~a~~~~~iGl~av~~~~~~~~~~hf--~SlHswlGl~t~~L~~lQ~~~G------------------~~~ 85 (177)
.+..||..=..-+.+...|+..-.........+.. ..+|-++|++...+...=.... ...
T Consensus 6 ~r~~HW~~a~~~i~l~~tG~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (182)
T PF01292_consen 6 TRILHWLNALSFIALIATGLWIHFPPPGLYFGDFGGVRNWHVIAGLLLFALLIFRLLWRWRRLFPWSDDVFFQVKNYLYF 85 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHH
Confidence 35799999999999999999886665554433333 7899999998888766555544 101
Q ss_pred heecCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC---CCh---hhHHHH-HHHHHHHHHHHHh
Q 030438 86 FFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTFLENSGLAK---YGS---EALLVN-FTAVITILYGAFV 158 (177)
Q Consensus 86 fl~p~~~~~~r~~~~p~H~~~G~~~~~l~~~t~~lGl~ek~~f~~~~~~~~---~~~---e~~~~n-~~gl~~~~~~~~v 158 (177)
..-.+ .......-|.-+..-.+.+++.++.+++|+.-.. ...+..+. ... -..... .++..++.+..+-
T Consensus 86 ~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~iTG~~~~~--~~~~~~~~~~~~~~~~~~~~~vH~~~a~~~i~~i~~H 161 (182)
T PF01292_consen 86 LLRGK--PPPAGKYNPGQKIVHWVLYLLLLLLPITGLLLWF--ASAEGFPLFAASPGGAQIARSVHFFLAWLLIAFIILH 161 (182)
T ss_pred HhcCC--CCCCCcCChHHHHHHHHHHHHHHHHHHHHHHHHH--hhcccCccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 1111223334444666677777778888876322 11111111 111 122222 7777777888888
Q ss_pred hhhccccCCCCCC
Q 030438 159 IFSVASQGPAEDD 171 (177)
Q Consensus 159 ~~~~~~~~~~~~~ 171 (177)
++.+.......||
T Consensus 162 v~~a~~~~~~~~~ 174 (182)
T PF01292_consen 162 VYAALFHHFRWRD 174 (182)
T ss_pred HHHHHHHhhhHHH
Confidence 8887776554443
No 28
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=94.18 E-value=2.1 Score=33.43 Aligned_cols=92 Identities=18% Similarity=0.087 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhhheecCCCCCcccchhhHHHHH
Q 030438 27 KVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLF 106 (177)
Q Consensus 27 k~iH~~l~~~a~~~~~iGl~av~~~~~~~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~ 106 (177)
-..|-.++.+++++...=-..+++... ..++.-...|.++=++++++... |+..-+.-+ ....++.+.-+|-|+
T Consensus 8 Fn~HP~lM~~gfi~l~~eAiL~~r~~~-~~k~~~k~iH~~l~~la~~~~vv----Gl~avf~~~-~~~~~~~~~SlHSwl 81 (144)
T cd08766 8 FNVHPVLMVIGFIFLAGEAILAYKTVP-GSREVQKAVHLTLHLVALVLGIV----GIYAAFKFH-NEVGIPNLYSLHSWL 81 (144)
T ss_pred eeccHHHHHHHHHHHHHHHHHHhhccc-cccchhHHHHHHHHHHHHHHHHH----HHHHHHHHh-cccCccccccHHHHH
Confidence 468999999998766654555666422 23444567899988877776553 443322211 222355677899999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030438 107 GLFVYILAVANAAIGFLE 124 (177)
Q Consensus 107 G~~~~~l~~~t~~lGl~e 124 (177)
|++++++-......|+..
T Consensus 82 Gl~t~~L~~lQ~~~G~~~ 99 (144)
T cd08766 82 GIGTISLFGLQWLFGFVT 99 (144)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999965
No 29
>PLN02680 carbon-monoxide oxygenase
Probab=94.07 E-value=2.6 Score=35.66 Aligned_cols=112 Identities=21% Similarity=0.130 Sum_probs=74.2
Q ss_pred hHhhhHHHhhcc-ccc---ccchhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccchhhHHHHHHHHHHHHHhhhh
Q 030438 7 IIGGEAIMSYKG-LNL---RKEVKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYG 82 (177)
Q Consensus 7 ~l~~eaiL~~r~-~~~---~~~~~k~iH~~l~~~a~~~~~iGl~av~~~~~~~~~~hf~SlHswlGl~t~~L~~lQ~~~G 82 (177)
.+..-..+-||- +.+ ++...-..|=.++.+++++...--..+++... ..++.-...|-.+=.+++++.. .|
T Consensus 23 ~lv~~W~~~~rgG~aw~~~~~~~~Fn~HPlLM~~Gfi~l~geAIL~yr~~~-~~k~~~K~iH~~L~~lA~~l~v----vG 97 (232)
T PLN02680 23 ALVLTWTVHYRGGLALSSDNKDLIFNVHPVLMVIGLVLLNGEAMLAYKTVP-GTKNLKKLVHLTLQFLAFCLSL----IG 97 (232)
T ss_pred HHHHHHHHHhCccccccCCCCcceEechHHHHHHHHHHHHHHHHhcccccc-ccchhHHHHHHHHHHHHHHHHH----HH
Confidence 344445556773 322 22223479999999999995544444555332 3345567889998888777664 34
Q ss_pred hhhheecCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 030438 83 FVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLE 124 (177)
Q Consensus 83 ~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~l~~~t~~lGl~e 124 (177)
+..-+.-. .++.++.+.-+|-|+|+.++++-......|+..
T Consensus 98 l~avfk~h-n~~~~~nfySlHSWlGl~t~iL~~lQ~~~Gf~~ 138 (232)
T PLN02680 98 VWAALKFH-NEKGIDNFYSLHSWLGLACLFLFSLQWAAGFVT 138 (232)
T ss_pred HHHHHHhc-cccCccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43322111 233456778899999999999999999999975
No 30
>PLN02351 cytochromes b561 family protein
Probab=92.98 E-value=5.2 Score=34.08 Aligned_cols=111 Identities=19% Similarity=0.213 Sum_probs=73.2
Q ss_pred hhHhhhHHHhhcc-cccccchhH-----HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccchhhHHHHHHHHHHHHHh
Q 030438 6 IIIGGEAIMSYKG-LNLRKEVKK-----VIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQW 79 (177)
Q Consensus 6 v~l~~eaiL~~r~-~~~~~~~~k-----~iH~~l~~~a~~~~~iGl~av~~~~~~~~~~hf~SlHswlGl~t~~L~~lQ~ 79 (177)
+.+..--++-||- +.++...+| ..|-.++.+++++..-=-..+|+.-...++ --..+|-++=.+++++-
T Consensus 24 ~~lvl~W~~~~rgG~aw~~~~~~~~iffn~HP~lMviGfi~L~geAILvYR~~~~~~k-~~K~lH~~Lh~~Ali~~---- 98 (242)
T PLN02351 24 AVLVLYWALFFKSSFLPQSTSQEDLVYAVLHPLLMVIGFILISGEAILVHRWLPGSRK-TKKSVHLWLQGLALASG---- 98 (242)
T ss_pred HHHHHHHHHHhCCccccCCCCCccceeecccHHHHHHHHHHHHHHHHHHhhcccccch-HHHHHHHHHHHHHHHHH----
Confidence 4445555666773 333221222 499999999999877666667765432222 26888988876666554
Q ss_pred hhhhhhheecCCCCC-cccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 030438 80 LYGFVIFFYPGGSTG-LRSESLPWHVLFGLFVYILAVANAAIGFLE 124 (177)
Q Consensus 80 ~~G~~~fl~p~~~~~-~r~~~~p~H~~~G~~~~~l~~~t~~lGl~e 124 (177)
+.|+..-++ ..+ ..+-+.-+|-|+|+.+..+-...-..|+..
T Consensus 99 vvGl~a~fh---~~~~~i~nlySLHSWlGl~tv~Lf~lQwv~Gf~~ 141 (242)
T PLN02351 99 VFGIWTKFH---GQDGIVANFYSLHSWMGLICVSLFGAQWLTGFMS 141 (242)
T ss_pred HHHHHHHHh---cccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456655111 222 235578899999999999999999999975
No 31
>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.
Probab=92.69 E-value=2.9 Score=33.53 Aligned_cols=145 Identities=11% Similarity=0.107 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcccc-C------CCCccchhhHHHHHHHHHHHHHhhhhhhhheecCC-------
Q 030438 26 KKVIHLVLHAIALILGIIGIYAAFKYHNES-A------IVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGG------- 91 (177)
Q Consensus 26 ~k~iH~~l~~~a~~~~~iGl~av~~~~~~~-~------~~hf~SlHswlGl~t~~L~~lQ~~~G~~~fl~p~~------- 91 (177)
.+..||..=..-+++.+.|+.......... + ...+..+|-++|++.+.+...=.+.++..- .|..
T Consensus 7 ~R~~HW~~a~~~i~l~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~l~l~rl~~~~~~~-~~~~~r~~~~~ 85 (211)
T TIGR02125 7 VRLFHWVRALAIFVLIVTGFYIAYPFLSPPSGEAVHFLQGYIRFVHFAAGFVLIAVLLFRVYLAFVGK-DSRYERFSFRD 85 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cchhhHHhhcC
Confidence 357899988888888888987753321110 1 123568999999988887776665555330 0100
Q ss_pred CCCccc-------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCh------------h
Q 030438 92 STGLRS-------------------ESLPWHVLFGLFVYILAVANAAIGFLEKLTFLENSGLAKYGS------------E 140 (177)
Q Consensus 92 ~~~~r~-------------------~~~p~H~~~G~~~~~l~~~t~~lGl~ek~~f~~~~~~~~~~~------------e 140 (177)
+.+.++ .+-|.-+..-...+++.++..++|+.--. ..++.+..++ +
T Consensus 86 ~~~~~~~~~~~~~y~~~~~~~~~~~~~n~~~k~~~~~l~~~~~~~~lTG~~~~~---~~~~~~~~~~~~f~~~~~~~~~~ 162 (211)
T TIGR02125 86 PLNPKAWIKQLRWYLFLGKHPHKKGGYNPLQFVAYFGFIVLILFMILTGLALYY---YHNGLGGLLPSLFGWVEPLFGGL 162 (211)
T ss_pred CCCHHHHHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh---hcCCCCchHHHHHHHHHHHhCCh
Confidence 011000 11245666677788888889999985311 0000011110 0
Q ss_pred --hHHH-HHHHHHHHHHHHHhhhhccccCCCCCCCCC
Q 030438 141 --ALLV-NFTAVITILYGAFVIFSVASQGPAEDDYSY 174 (177)
Q Consensus 141 --~~~~-n~~gl~~~~~~~~v~~~~~~~~~~~~~~~~ 174 (177)
.... ..++.+++++.++-++.+.......+|..-
T Consensus 163 ~~~~~iH~~~a~~l~~~i~~Hi~~a~~h~~~~~~~~l 199 (211)
T TIGR02125 163 ANVRFIHHLGMWAFVIFVPVHVYMAVREDIRSRSGVI 199 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCce
Confidence 1112 266777778888888888876554445443
No 32
>PRK11513 cytochrome b561; Provisional
Probab=92.67 E-value=1.3 Score=35.39 Aligned_cols=97 Identities=18% Similarity=0.192 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhhheecCCCCCcccchhhHHH
Q 030438 25 VKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHV 104 (177)
Q Consensus 25 ~~k~iH~~l~~~a~~~~~iGl~av~~~~~~~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~ 104 (177)
..+.+||..=.+-+.....|.......+ ...+.++++|-.+|++++.+..+-.+..+. .--|..+.+.++.....=+
T Consensus 8 ~~~~lHWl~a~li~~~~~~~~~~~~~~~--~~~~~~~~~H~s~G~~vl~L~v~Rl~~r~~-~~~P~~~~~~~~~~~~~A~ 84 (176)
T PRK11513 8 LQIGIHWLVFLLVIVAYCAMEFRGFFPR--SDRPLINMIHVSCGISILVLMVVRLLLRLK-YPTPPIVPKPKPMMTGLAH 84 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCCCCHHHHHHHH
Confidence 3468999644333333333332221111 122457899999999999999999999994 3334322221111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030438 105 LFGLFVYILAVANAAIGFLE 124 (177)
Q Consensus 105 ~~G~~~~~l~~~t~~lGl~e 124 (177)
..-...|++-++..++|+..
T Consensus 85 ~~H~~LY~lli~~plsG~~~ 104 (176)
T PRK11513 85 LGHLVIYLLFIALPVIGLVM 104 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 22256788888888888863
No 33
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=92.27 E-value=5.3 Score=32.48 Aligned_cols=114 Identities=14% Similarity=0.114 Sum_probs=73.3
Q ss_pred hhHhhhHHHhhcc-ccc-ccchhHHHHHHHHHHHHHHHHHHHHHHhhhcc-c-cCCCCccchhhHHHHHHHHHHHHHhhh
Q 030438 6 IIIGGEAIMSYKG-LNL-RKEVKKVIHLVLHAIALILGIIGIYAAFKYHN-E-SAIVNLYSLHSWLGIAVISLYGIQWLY 81 (177)
Q Consensus 6 v~l~~eaiL~~r~-~~~-~~~~~k~iH~~l~~~a~~~~~iGl~av~~~~~-~-~~~~hf~SlHswlGl~t~~L~~lQ~~~ 81 (177)
+.+..--++.||- +.+ +.......|-.+..+++++..-=-.++|+.-. . .++.-....|..+=.+++++-.+
T Consensus 12 ~~lv~~W~~~~rgG~~w~~~~~~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vv---- 87 (179)
T cd08762 12 VVLVVHWNQMWRGGFAWDGSSKNFNWHPVLMVTGMVVLYGNAALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVI---- 87 (179)
T ss_pred HHHHHHHHHHcCCccCCCCCCCceeehHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHH----
Confidence 3455555666774 332 12225679999999999988554455665221 1 12333568899988877766543
Q ss_pred hhhhheecCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 030438 82 GFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLE 124 (177)
Q Consensus 82 G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~l~~~t~~lGl~e 124 (177)
|+..-+--. ..+..+.+.-+|-|.|+.+..+-......|+..
T Consensus 88 Gl~avf~~h-n~~~~~nlySlHSWlGl~t~~Lf~lQ~~~Gf~~ 129 (179)
T cd08762 88 GLCAVFNFH-NVHHTANLYSLHSWVGICTVALFTCQWVMGFTS 129 (179)
T ss_pred HHHHHHHhc-cccCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433321111 223346677899999999999999999999975
No 34
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=91.79 E-value=3.5 Score=31.84 Aligned_cols=92 Identities=17% Similarity=0.212 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhhh---eecCCCCCcccchhh---
Q 030438 28 VIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIF---FYPGGSTGLRSESLP--- 101 (177)
Q Consensus 28 ~iH~~l~~~a~~~~~iGl~av~~~~~~~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~f---l~p~~~~~~r~~~~p--- 101 (177)
.+.+.++.++.++...|...+-+.+.+.. -... ..+.+...+|+.-++..-... -+++ +...|..+.+
T Consensus 6 ~l~a~~~~~s~~ll~~g~~~Ir~~~~~~H---r~~M--l~a~~ls~lFlv~Yl~~~~~~g~~~f~g-~~~ir~~Y~~iL~ 79 (133)
T PF04238_consen 6 DLNAVLNAISAVLLLIGWYFIRRGRIKLH---RKLM--LTAFVLSALFLVSYLYYHFLGGSTPFGG-PGWIRPVYLFILI 79 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHH---HHHH--HHHHHHHHHHHHHHHHHHHhcCCcccCC-CccHHHHHHHHHH
Confidence 57789999999999999999865433322 1111 122222234444444333211 1111 3345655444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030438 102 WHVLFGLFVYILAVANAAIGFLEK 125 (177)
Q Consensus 102 ~H~~~G~~~~~l~~~t~~lGl~ek 125 (177)
.|..+-..+..+...|...|+.++
T Consensus 80 ~Hi~LA~~~~pL~l~tl~~a~~~~ 103 (133)
T PF04238_consen 80 SHIILAIVALPLVLYTLYRALRGR 103 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 699999999999999999999864
No 35
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=91.67 E-value=0.33 Score=28.60 Aligned_cols=28 Identities=29% Similarity=0.229 Sum_probs=25.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 030438 96 RSESLPWHVLFGLFVYILAVANAAIGFL 123 (177)
Q Consensus 96 r~~~~p~H~~~G~~~~~l~~~t~~lGl~ 123 (177)
|+..+.+|++.|+.+.+..+.-+++|..
T Consensus 2 r~~~~~~H~~~g~~~~~~ll~~~lTG~~ 29 (34)
T PF13172_consen 2 RKFWRKIHRWLGLIAAIFLLLLALTGAL 29 (34)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677889999999999999999999985
No 36
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=91.25 E-value=2.7 Score=32.50 Aligned_cols=55 Identities=15% Similarity=0.132 Sum_probs=40.5
Q ss_pred HHHHHHHHHhhhhhhhhee---cCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 030438 70 AVISLYGIQWLYGFVIFFY---PGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLE 124 (177)
Q Consensus 70 ~t~~L~~lQ~~~G~~~fl~---p~~~~~~r~~~~p~H~~~G~~~~~l~~~t~~lGl~e 124 (177)
+..+++.+|.+.|+..+.- +......++..+-+|..+|.+..++.+.=...++.+
T Consensus 14 ~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~ 71 (188)
T PF00033_consen 14 LNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFS 71 (188)
T ss_dssp HHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556777777788866522 222334456778899999999999999999999887
No 37
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=90.41 E-value=0.49 Score=28.52 Aligned_cols=28 Identities=21% Similarity=0.191 Sum_probs=25.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 030438 96 RSESLPWHVLFGLFVYILAVANAAIGFL 123 (177)
Q Consensus 96 r~~~~p~H~~~G~~~~~l~~~t~~lGl~ 123 (177)
|+.+...|+|.|+.+-++-..-+.+|..
T Consensus 1 rr~~~~~H~W~Gl~~g~~l~~~~~tG~~ 28 (37)
T PF13706_consen 1 RRILRKLHRWLGLILGLLLFVIFLTGAV 28 (37)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 5677889999999999999999999976
No 38
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=88.47 E-value=11 Score=29.87 Aligned_cols=93 Identities=18% Similarity=0.090 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc--ccCCCCccchhhHHHHHHHHHHHHHhhhhhhhheecCCCCCcccchhhHHH
Q 030438 27 KVIHLVLHAIALILGIIGIYAAFKYHN--ESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHV 104 (177)
Q Consensus 27 k~iH~~l~~~a~~~~~iGl~av~~~~~--~~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~ 104 (177)
-..|=.++.+++++...=...+|+.-. ...++.-...|-++=++++++.. .|+..-+.-. .....+.+.-+|-
T Consensus 12 Fn~HPlLm~~Gfi~l~geAiL~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i----~Gl~avf~~h-n~~~~~~fySlHS 86 (153)
T cd08765 12 FNWHPVLMVIGFIFIQGIAIIVYRLPWTWKCSKLLMKLIHAGLHILAFILAI----ISVVAVFVFH-NAKNIPNMYSLHS 86 (153)
T ss_pred eechHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHH----HHHHHHHHHc-cccCCCccccHHH
Confidence 358999999999984443444555221 12345567889888777766654 3554322212 2234567888999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030438 105 LFGLFVYILAVANAAIGFLE 124 (177)
Q Consensus 105 ~~G~~~~~l~~~t~~lGl~e 124 (177)
|.|++++++-......|+..
T Consensus 87 wlGl~t~~l~~lQ~~~Gf~~ 106 (153)
T cd08765 87 WVGLAAVILYPLQLVLGISV 106 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999964
No 39
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=87.42 E-value=7.3 Score=31.70 Aligned_cols=93 Identities=24% Similarity=0.324 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhhheecCCCCC----cccchhh
Q 030438 26 KKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTG----LRSESLP 101 (177)
Q Consensus 26 ~k~iH~~l~~~a~~~~~iGl~av~~~~~~~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~----~r~~~~p 101 (177)
...+||..-.+-+.....|.......+.+..+-.++.+|=.+|++++.|..+-.+..+.. --|...++ .|..-+-
T Consensus 12 ~i~lHWl~allv~~~~~~g~~~~~~~~~~~~~~~~~~~Hks~Gi~vl~L~v~Rl~wrl~~-~~p~~~~~~~~~~~~aA~~ 90 (181)
T COG3038 12 QIALHWLMALLVIGAFALGELMGFLPRGPGLYFLLYELHKSIGILVLALMVLRLLWRLRN-PAPPIVPGPPPWQRKAAKL 90 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCCCCCCChHHHHHHHH
Confidence 458999998888888888888888877665566899999999999999999998888833 23322111 1233334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030438 102 WHVLFGLFVYILAVANAAIGFL 123 (177)
Q Consensus 102 ~H~~~G~~~~~l~~~t~~lGl~ 123 (177)
.| ..+|++-++-=++|+.
T Consensus 91 ~H----l~LY~l~lalPlsG~l 108 (181)
T COG3038 91 GH----LALYLLMLALPLSGYL 108 (181)
T ss_pred HH----HHHHHHHHHHHHHHHH
Confidence 45 3456666666666643
No 40
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=85.37 E-value=4.7 Score=28.34 Aligned_cols=58 Identities=22% Similarity=0.314 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh-hcc-------cc--CCCCccchhhHHHHHHHHHHHHHhhhhh
Q 030438 26 KKVIHLVLHAIALILGIIGIYAAFK-YHN-------ES--AIVNLYSLHSWLGIAVISLYGIQWLYGF 83 (177)
Q Consensus 26 ~k~iH~~l~~~a~~~~~iGl~av~~-~~~-------~~--~~~hf~SlHswlGl~t~~L~~lQ~~~G~ 83 (177)
.+.+=...-.+.+++.+.|++.-.. ..+ +. +....+.+|..+|+.+....++-.+.|.
T Consensus 16 G~~iv~~~al~~l~~~isGl~l~~p~~~~~~~~~r~~~~~~~r~~~dlH~~~G~~~~~~ll~~a~TG~ 83 (88)
T PF13703_consen 16 GRWIVGILALLLLLLLISGLYLWWPRRWRWFFSLRPKRSKSKRRWFDLHRVLGLWFLPFLLVIALTGL 83 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhcCcccccccCCCCccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666677777776642 111 00 1111455666666666666666666665
No 41
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=85.35 E-value=9.2 Score=31.11 Aligned_cols=52 Identities=21% Similarity=0.183 Sum_probs=41.2
Q ss_pred HHHHHHHHhhhhhhhheecCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 030438 71 VISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFL 123 (177)
Q Consensus 71 t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~l~~~t~~lGl~ 123 (177)
+..++..|++.|...-..|+ ....|.....+|.-+|+.++.+.+.=++..+.
T Consensus 19 ~allv~~~~~~g~~~~~~~~-~~~~~~~~~~~Hks~Gi~vl~L~v~Rl~wrl~ 70 (181)
T COG3038 19 MALLVIGAFALGELMGFLPR-GPGLYFLLYELHKSIGILVLALMVLRLLWRLR 70 (181)
T ss_pred HHHHHHHHHHHHHHHHHccc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44466777788887777776 44467778899999999999999999888875
No 42
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=85.10 E-value=15 Score=28.23 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhhhhhhheecCCCCCcccc--hhhHHHHHHHHHHHHHHHHHHHH
Q 030438 70 AVISLYGIQWLYGFVIFFYPGGSTGLRSE--SLPWHVLFGLFVYILAVANAAIG 121 (177)
Q Consensus 70 ~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~--~~p~H~~~G~~~~~l~~~t~~lG 121 (177)
+..+++..|.+.|+..+.-+. ....... .+.+|..+|.+...+.+.-....
T Consensus 12 ~~a~~~i~l~~tG~~~~~~~~-~~~~~~~~~~~~~H~~~G~~~~~~~~~~l~~~ 64 (182)
T PF01292_consen 12 LNALSFIALIATGLWIHFPPP-GLYFGDFGGVRNWHVIAGLLLFALLIFRLLWR 64 (182)
T ss_pred HHHHHHHHHHHHHHHHhcccc-cccccccchHHhHHHHHHHHHHHHHHHHHHHH
Confidence 355677888889996653322 2222222 47899999999999998888877
No 43
>PLN02810 carbon-monoxide oxygenase
Probab=84.31 E-value=24 Score=29.84 Aligned_cols=113 Identities=19% Similarity=0.096 Sum_probs=73.9
Q ss_pred hhHhhhHHHhhcc-ccc---ccchhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccchhhHHHHHHHHHHHHHhhh
Q 030438 6 IIIGGEAIMSYKG-LNL---RKEVKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLY 81 (177)
Q Consensus 6 v~l~~eaiL~~r~-~~~---~~~~~k~iH~~l~~~a~~~~~iGl~av~~~~~~~~~~hf~SlHswlGl~t~~L~~lQ~~~ 81 (177)
+.+..-..+-||- +.+ ++...-..|=.+..+++++.-.=-..+|+.-.. .+..-...|.++=.+++++-.+
T Consensus 22 ~vlvl~W~~~~rgG~aw~~~~~~~~FN~HPvlMv~Gfi~l~geAIL~Yr~~~~-~k~~~K~iH~~lh~~Al~l~vv---- 96 (231)
T PLN02810 22 AIMVLVWSIYYRGGLAWEATNKNLIFNLHPVLMLIGLIIIGGEAIMSYKSLPL-KKEVKKLIHLVLHAIALILGIF---- 96 (231)
T ss_pred HHHHHHHHHHcCCcccccCCCCCceeeehHHHHHHHHHHHhhHHHHHhhcccc-ccchHHHHHHHHHHHHHHHHHH----
Confidence 3444455556774 222 223345799999999998877766667764322 2345688899888777665443
Q ss_pred hhhhheecCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 030438 82 GFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLE 124 (177)
Q Consensus 82 G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~l~~~t~~lGl~e 124 (177)
|+..-+-.. ..+..+-+.-+|-|.|+.+..+-...-..|+..
T Consensus 97 Gl~Avf~~H-n~~~i~nlySLHSWlGl~tv~Lf~lQw~~Gf~~ 138 (231)
T PLN02810 97 GICAAFKNH-NESGIANLYSLHSWLGIGIISLYGIQWIYGFIV 138 (231)
T ss_pred HHHHHHHhc-cccCCCceeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333321111 223346677899999999999999999999953
No 44
>PF11158 DUF2938: Protein of unknown function (DUF2938); InterPro: IPR021329 This bacterial family of proteins has no known function. Some members are thought to be membrane proteins however this cannot be confirmed.
Probab=82.26 E-value=2.6 Score=33.28 Aligned_cols=88 Identities=14% Similarity=0.073 Sum_probs=54.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccchhhHHHHHHHH--HHHHHhhhhhhhheecCCCCCcccchh--
Q 030438 25 VKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVIS--LYGIQWLYGFVIFFYPGGSTGLRSESL-- 100 (177)
Q Consensus 25 ~~k~iH~~l~~~a~~~~~iGl~av~~~~~~~~~~hf~SlHswlGl~t~~--L~~lQ~~~G~~~fl~p~~~~~~r~~~~-- 100 (177)
..+.+=|..|-..-+....-+....... -...|.+.+- =..|++|+. .+..|+.+|+ -+.-.+.|...+++++
T Consensus 57 ~E~~~GW~~HY~iGi~fa~~~~~l~g~~-wl~~Pt~~~a-li~G~~tvl~p~~imqP~lG~-G~aas~tP~p~~~r~~sl 133 (150)
T PF11158_consen 57 GERILGWLAHYAIGIAFAVLYALLWGPG-WLSRPTLLPA-LIFGLVTVLAPFFIMQPALGA-GIAASKTPNPWKARLRSL 133 (150)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhc-cccCCchHHH-HHHHHHHHHHHHHHHHHHHhc-chhhccCCCchHHHHHHH
Confidence 3355667777665555555554444322 2234555443 247888777 8999999999 3344444555555554
Q ss_pred hHHHHHHHHHHHHHH
Q 030438 101 PWHVLFGLFVYILAV 115 (177)
Q Consensus 101 p~H~~~G~~~~~l~~ 115 (177)
--|..+|..+|+-+.
T Consensus 134 ~aH~vfG~gLyl~~~ 148 (150)
T PF11158_consen 134 IAHLVFGLGLYLSAL 148 (150)
T ss_pred HHHHHHHHHHHHHhh
Confidence 469999999998765
No 45
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=81.74 E-value=7.6 Score=27.26 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 030438 99 SLPWHVLFGLFVYILAVANAAIGFL 123 (177)
Q Consensus 99 ~~p~H~~~G~~~~~l~~~t~~lGl~ 123 (177)
...+|+..|..+......-+.+|..
T Consensus 60 ~~dlH~~~G~~~~~~ll~~a~TG~~ 84 (88)
T PF13703_consen 60 WFDLHRVLGLWFLPFLLVIALTGLF 84 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5669999999999999999999986
No 46
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=77.72 E-value=14 Score=26.49 Aligned_cols=55 Identities=20% Similarity=0.306 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhhhhhhh-heecCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHH
Q 030438 67 LGIAVISLYGIQWLYGFVI-FFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGF 122 (177)
Q Consensus 67 lGl~t~~L~~lQ~~~G~~~-fl~p~~~~~~r~~~~p~H~~~G~~~~~l~~~t~~lGl 122 (177)
+|.+.+.++.++.+.|.=. .+-+....+ .++...+|++.|+.+++++++=...=+
T Consensus 1 ~G~~a~~~l~~~~~l~~R~~~l~~~~~~~-~~~~~~~Hr~lg~~~~~~~~~H~~~~~ 56 (125)
T PF01794_consen 1 LGILAFALLPLVFLLGLRNSPLARLTGIS-FDRLLRFHRWLGRLAFFLALLHGVLYL 56 (125)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHhCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777778888888766211 111111112 233455999999999999887655433
No 47
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=77.27 E-value=3.8 Score=23.18 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=17.0
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhh
Q 030438 60 LYSLHSWLGIAVISLYGIQWLYGFV 84 (177)
Q Consensus 60 f~SlHswlGl~t~~L~~lQ~~~G~~ 84 (177)
|+.+|.|++.++...+.+-.+.|+.
T Consensus 1 ~~~LH~w~~~i~al~~lv~~iTGl~ 25 (27)
T PF03929_consen 1 FNDLHKWFGDIFALFMLVFAITGLI 25 (27)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778887777777666666653
No 48
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=74.49 E-value=38 Score=28.92 Aligned_cols=113 Identities=19% Similarity=0.121 Sum_probs=72.8
Q ss_pred hHhhhHHHhhcc-cccc--cchhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccchhhHHHHHHHHHHHHHhhhhh
Q 030438 7 IIGGEAIMSYKG-LNLR--KEVKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGF 83 (177)
Q Consensus 7 ~l~~eaiL~~r~-~~~~--~~~~k~iH~~l~~~a~~~~~iGl~av~~~~~~~~~~hf~SlHswlGl~t~~L~~lQ~~~G~ 83 (177)
.+-+-....||- +.++ .....-.|-.++.++++..--=-..+++.-....++--...|.++=++++++-..-...-|
T Consensus 32 ~lvl~W~~~yr~Glaw~~~~~~~fnlHP~lMviGfI~l~GeAiL~YR~~r~~~k~~~KliH~~LH~~Alvl~i~gl~avf 111 (245)
T KOG1619|consen 32 VLVLYWVNTYRGGLAWSSSPNKEFNLHPVLMVIGFIYLQGEAILIYRVFRYTSKKVSKLIHLGLHIIALVLAIIGLCAVF 111 (245)
T ss_pred HHHHHHHHHcCCccCCCCCcchhcCcchHHHHHHHHHhccceeeeeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566774 3322 2223358999999888875444444555522223445678899999988887665444444
Q ss_pred hhheecCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 030438 84 VIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLE 124 (177)
Q Consensus 84 ~~fl~p~~~~~~r~~~~p~H~~~G~~~~~l~~~t~~lGl~e 124 (177)
-++ .....+-+.-+|-|.|+.++++=.+.-..|+..
T Consensus 112 ~~h-----n~~~i~NfySLHSWlGl~~v~ly~~Q~v~GF~t 147 (245)
T KOG1619|consen 112 DSH-----NLVGIANFYSLHSWLGLCVVILYSLQWVFGFFT 147 (245)
T ss_pred HHh-----hhcCccceeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 111235677799999999999999999999975
No 49
>TIGR01583 formate-DH-gamm formate dehydrogenase, gamma subunit. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model.
Probab=74.37 E-value=42 Score=27.11 Aligned_cols=136 Identities=14% Similarity=0.094 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcc-----ccCCCCccchhhHHHHHHHHHHHHHhhhhhhhheecCCC--------
Q 030438 26 KKVIHLVLHAIALILGIIGIYAAFKYHN-----ESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGS-------- 92 (177)
Q Consensus 26 ~k~iH~~l~~~a~~~~~iGl~av~~~~~-----~~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~fl~p~~~-------- 92 (177)
.+..||+.-..-+++...|+...+..-. ..+.+....+|-+.|.+.+.+++.-.+ ...-...|...
T Consensus 9 ~r~~HW~~a~~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~~H~~~g~~~~~~~i~~~~-~~~~~~~~~~~d~~~~~~~ 87 (204)
T TIGR01583 9 DRILHWIAAISFLILVFTGFVMMFGKFFWLGVILGELWVAKNLHPFAGILFFISIIPMFL-KWWRRMIPAKYDIRWMMKV 87 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcchhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHh
Confidence 3478999988888999999988655221 112234667899999987776654422 11111222110
Q ss_pred ----------CCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChh----hH-HHHHHHHHHHHHHHH
Q 030438 93 ----------TGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTFLENSGLAKYGSE----AL-LVNFTAVITILYGAF 157 (177)
Q Consensus 93 ----------~~~r~~~~p~H~~~G~~~~~l~~~t~~lGl~ek~~f~~~~~~~~~~~e----~~-~~n~~gl~~~~~~~~ 157 (177)
.....++-|..+..-..++++.++.+++|+.- +.+..+ . ...+.+ +. +=..++.+++++.++
T Consensus 88 ~~y~~~~~~~~p~~~kyN~~Qk~~y~~i~~~~~~~~~TGl~m-~~~~~~-~-~~~~~~~~~~~~~~H~~~a~l~~~~vi~ 164 (204)
T TIGR01583 88 GGYLSKIKRPVPSAGKYNAGQKSWYWILVLGGFLMIITGIFM-WFLDFP-S-TAFSIELLRISALIHNFSAIILAVGFIV 164 (204)
T ss_pred chHhcCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH-HHHHcc-c-ccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01123355678888888888888999999862 211111 1 112221 11 222667777788888
Q ss_pred hhhhcccc
Q 030438 158 VIFSVASQ 165 (177)
Q Consensus 158 v~~~~~~~ 165 (177)
-++.+..+
T Consensus 165 Hiy~a~~~ 172 (204)
T TIGR01583 165 HIYMAVFG 172 (204)
T ss_pred HHHHHHhc
Confidence 88888774
No 50
>PRK15006 thiosulfate reductase cytochrome B subunit; Provisional
Probab=74.23 E-value=54 Score=27.87 Aligned_cols=54 Identities=17% Similarity=0.242 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccchhhHHHHHHHHHHHHHhh
Q 030438 27 KVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWL 80 (177)
Q Consensus 27 k~iH~~l~~~a~~~~~iGl~av~~~~~~~~~~hf~SlHswlGl~t~~L~~lQ~~ 80 (177)
+..||..=..-+++.+.|+...+..-.....+....+|-|.|.+..+..+.-.+
T Consensus 74 Rl~HW~~A~~fl~L~lTGl~i~~p~~~~~~~~~~~~iH~~~G~vf~~~~l~~~~ 127 (261)
T PRK15006 74 RLWHWSNALLFVLLLLSGLINHFALVGATAVKSLVAVHEVCGFLLLACWLGFVL 127 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367999999999999999998654221112233456799999877765444333
No 51
>PF10067 DUF2306: Predicted membrane protein (DUF2306); InterPro: IPR018750 Members of this family of hypothetical bacterial proteins have no known function.
Probab=73.52 E-value=24 Score=25.54 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=24.3
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 030438 96 RSESLPWHVLFGLFVYILAVANAAIGFL 123 (177)
Q Consensus 96 r~~~~p~H~~~G~~~~~l~~~t~~lGl~ 123 (177)
|++....||..|++-....+.++.+|+.
T Consensus 2 R~k~~~~HR~lGrvyv~~~~~~a~sa~~ 29 (103)
T PF10067_consen 2 RRKGPRLHRWLGRVYVAAMLISALSALF 29 (103)
T ss_pred CCCcccHHHhhhHHHHHHHHHHHHHHHH
Confidence 5666679999999999999999999985
No 52
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=70.90 E-value=5 Score=23.44 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=21.9
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhh
Q 030438 60 LYSLHSWLGIAVISLYGIQWLYGFV 84 (177)
Q Consensus 60 f~SlHswlGl~t~~L~~lQ~~~G~~ 84 (177)
+..+|-|+|+.+....++..+.|..
T Consensus 5 ~~~~H~~~g~~~~~~ll~~~lTG~~ 29 (34)
T PF13172_consen 5 WRKIHRWLGLIAAIFLLLLALTGAL 29 (34)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999988884
No 53
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=70.16 E-value=45 Score=25.26 Aligned_cols=81 Identities=14% Similarity=0.167 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhhheecCCCCCcccchhhHHHHH
Q 030438 27 KVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLF 106 (177)
Q Consensus 27 k~iH~~l~~~a~~~~~iGl~av~~~~~~~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~ 106 (177)
+...+.-...+.++.+.|+.-.+.. .+.| ..++-+-..++|++..+.-...+..++...-+..+.
T Consensus 4 ~~~r~~~~~~~~~~i~~gi~~l~~~---------~~~~------~~i~~~Y~i~fg~ll~~~E~~~~~i~~~~~FL~~~~ 68 (136)
T PF08507_consen 4 NIFRILNIIAGILLILAGILSLFNS---------FSFS------SFILGVYCILFGLLLILAEFRWPFIRKYFGFLYSYI 68 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh---------hhHH------HHHHHHHHHHHHHHHHHHHhccHHHHHhHhHHHhHH
Confidence 3445555556666666666555443 2223 222222334556655544322222566667789999
Q ss_pred HHHHHHHHHHHHHHHH
Q 030438 107 GLFVYILAVANAAIGF 122 (177)
Q Consensus 107 G~~~~~l~~~t~~lGl 122 (177)
||..+.+=+++...+.
T Consensus 69 GRGlfyif~G~l~~~~ 84 (136)
T PF08507_consen 69 GRGLFYIFLGTLCLGQ 84 (136)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999988877777665
No 54
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=67.58 E-value=64 Score=26.50 Aligned_cols=60 Identities=8% Similarity=0.059 Sum_probs=42.1
Q ss_pred ccCCCCccchhhHHHHHHHHHHHHHhhhhhhhheecCCCCCcccchhhHHHHHHHHHHHHHHHHHH
Q 030438 54 ESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAA 119 (177)
Q Consensus 54 ~~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~l~~~t~~ 119 (177)
..|.+-..+.--..|..++.+++++...+-+.-..+ ..++..+||..|+..+..+..=..
T Consensus 34 ~lg~~p~~~~~~~tG~~Al~llll~l~l~pL~~l~~------~~~l~~~RR~LGl~af~~a~lH~~ 93 (205)
T PRK05419 34 GLGADPVKDIEHFTGLWALVFLLATLAVTPLRRLTG------QPLLIRTRRLLGLWAFFYATLHLL 93 (205)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555667777888888888888887766432221 135788999999988888776654
No 55
>PRK11513 cytochrome b561; Provisional
Probab=65.60 E-value=56 Score=25.95 Aligned_cols=50 Identities=20% Similarity=0.157 Sum_probs=34.5
Q ss_pred HHHHHHHHhhhhhhhheecCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 030438 71 VISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFL 123 (177)
Q Consensus 71 t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~l~~~t~~lGl~ 123 (177)
+..++..|+..|...-..|. +.+..++.+|..+|..++++.+.=+..++.
T Consensus 16 ~a~li~~~~~~~~~~~~~~~---~~~~~~~~~H~s~G~~vl~L~v~Rl~~r~~ 65 (176)
T PRK11513 16 VFLLVIVAYCAMEFRGFFPR---SDRPLINMIHVSCGISILVLMVVRLLLRLK 65 (176)
T ss_pred HHHHHHHHHHHHHHHcccch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34455666666654333332 234566789999999999999988888775
No 56
>PF09990 DUF2231: Predicted membrane protein (DUF2231); InterPro: IPR019251 This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=64.93 E-value=49 Score=23.69 Aligned_cols=45 Identities=16% Similarity=0.209 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCccchhhHHHHHHHHHHHH
Q 030438 33 LHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGI 77 (177)
Q Consensus 33 l~~~a~~~~~iGl~av~~~~~~~~~~hf~SlHswlGl~t~~L~~l 77 (177)
=-..+++.+..|+.....-+.+.+..+--..|.++|+.++.++..
T Consensus 12 G~l~~~~A~~~G~~d~~~~~~~~~~~~~~~~H~~~~~~~~~l~~~ 56 (104)
T PF09990_consen 12 GLLGAIVAVLTGFVDLLTVERGPPAHRVAWLHAILGLVALGLFLL 56 (104)
T ss_pred HHHHHHHHHHHHHHHHHhCcCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 334555566667776666544445556778899999999998886
No 57
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=58.88 E-value=63 Score=30.97 Aligned_cols=69 Identities=22% Similarity=0.334 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHHhhhhhhhheecCCCCCc------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 030438 65 SWLGIAVISLYGIQWLYGFVIFFYPGGSTGL------RSESLPWHVLFGLFVYILAVANAAIGFLEKLTFLENSGLAKYG 138 (177)
Q Consensus 65 swlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~------r~~~~p~H~~~G~~~~~l~~~t~~lGl~ek~~f~~~~~~~~~~ 138 (177)
-|......++..+- +.+...|++|...++. |+....==-+.|..+++.+++-.++|++ +.+...|+|-+
T Consensus 196 Rw~~~~~~i~~~i~-~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~----wgG~~~~~W~S 270 (599)
T PF06609_consen 196 RWIFYIFIIWSGIA-LVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLS----WGGYPYYPWKS 270 (599)
T ss_pred chHHHHHHHHHHHH-HHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHh----ccCCCCCCCCC
Confidence 45555555544433 3465667777542221 1112222457999999999999999997 55542344444
No 58
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=57.13 E-value=75 Score=23.32 Aligned_cols=89 Identities=20% Similarity=0.325 Sum_probs=56.6
Q ss_pred cccchhHHHHHHHHHHHHHHH-HHHHHHHhhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhhheecCCCCCcccch
Q 030438 21 LRKEVKKVIHLVLHAIALILG-IIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSES 99 (177)
Q Consensus 21 ~~~~~~k~iH~~l~~~a~~~~-~iGl~av~~~~~~~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~ 99 (177)
++++..-..|..++.++++.. -+|+..... + .+||--.=.+..++..+-+..|.. +-+.. +.+
T Consensus 12 ~~~~~~l~~Hi~lm~la~~il~Pi~lvL~~~--~-------sr~~~~~q~~~~~l~~~g~~~g~~---~~~~~----p~l 75 (105)
T PF10348_consen 12 SPHRSALYAHIVLMTLAWVILYPIGLVLGNA--R-------SRWHLPVQTVFLVLMILGLFLGSV---YNGST----PDL 75 (105)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHc--c-------chHHHHHHHHHHHHHHHHHHHHHH---HhcCC----CCC
Confidence 456666789999999998654 356654222 1 234555444444455555555552 11111 123
Q ss_pred hh--HHHHHHHHHHHHHHHHHHHHHHHH
Q 030438 100 LP--WHVLFGLFVYILAVANAAIGFLEK 125 (177)
Q Consensus 100 ~p--~H~~~G~~~~~l~~~t~~lGl~ek 125 (177)
.| .|.-+|.+++++.++..+.|+..|
T Consensus 76 yp~n~H~k~g~il~~l~~~q~~~gv~~~ 103 (105)
T PF10348_consen 76 YPNNAHGKMGWILFVLMIVQVILGVILK 103 (105)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23 899999999999999999999755
No 59
>PRK10263 DNA translocase FtsK; Provisional
Probab=56.69 E-value=71 Score=33.60 Aligned_cols=59 Identities=15% Similarity=0.322 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHH--HhhhccccCCCCccc------hhhHHHHHHHH-HHHHHhhhhhhhheec
Q 030438 30 HLVLHAIALILGIIGIYA--AFKYHNESAIVNLYS------LHSWLGIAVIS-LYGIQWLYGFVIFFYP 89 (177)
Q Consensus 30 H~~l~~~a~~~~~iGl~a--v~~~~~~~~~~hf~S------lHswlGl~t~~-L~~lQ~~~G~~~fl~p 89 (177)
|......+++|.++++.+ .+.+.+-.. |.|.. .|.|.|.+=-. --++-.++|+.+|++|
T Consensus 20 rrL~E~~gIlLlllAlfL~lALiSYsPsD-PSwS~sa~~~~V~Nl~GiVGA~LAD~L~~LFGl~AYLLP 87 (1355)
T PRK10263 20 RRLLEALLILIVLFAVWLMAALLSFNPSD-PSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIP 87 (1355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCccC-CcccccCcccccccccchHHHHHHHHHHHHHhHHHHHHH
Confidence 455566666666666444 222222222 34432 57888876433 2233347888888776
No 60
>PRK10639 formate dehydrogenase-O subunit gamma; Provisional
Probab=55.91 E-value=96 Score=25.19 Aligned_cols=132 Identities=14% Similarity=0.099 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc----c-cCCCCccchhhHHHHHHHHHHHHHhhhhhhhheecCCCCCc------
Q 030438 27 KVIHLVLHAIALILGIIGIYAAFKYHN----E-SAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGL------ 95 (177)
Q Consensus 27 k~iH~~l~~~a~~~~~iGl~av~~~~~----~-~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~------ 95 (177)
...||..-..-++|.+.|+...+..-. . .+.+.....|-+.|.+.++.+......-+ --..|. ..|.
T Consensus 15 Ri~HW~~a~s~~~L~~TGl~i~~p~~~~~~~~~g~~~~~r~iH~~~g~i~~~~~~~~~~~~~-~~~~~~-~~d~~w~~~~ 92 (211)
T PRK10639 15 RINHWIVAFCFILAAVSGLGFFFPSFNWLMNILGTPQLARILHPFVGVVMFASFIIMFFRYW-HHNLIN-RDDIFWAKNI 92 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCC-hhhHHHHHHh
Confidence 368999999999999999987553221 0 11122234799999988886666533222 112222 1111
Q ss_pred -----------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCh----hhHHH-HHHHHHHHHHHHHhh
Q 030438 96 -----------RSESLPWHVLFGLFVYILAVANAAIGFLEKLTFLENSGLAKYGS----EALLV-NFTAVITILYGAFVI 159 (177)
Q Consensus 96 -----------r~~~~p~H~~~G~~~~~l~~~t~~lGl~ek~~f~~~~~~~~~~~----e~~~~-n~~gl~~~~~~~~v~ 159 (177)
..++-|..+..-..++++.++-+++|+. ..+..- ...++. -.... +..+.+++++..+-+
T Consensus 93 ~~~~~~~~~p~~~kyN~~qk~~y~~~~~~~~~~~iTGl~--l~~p~~--~~~~~~~~~~~~~~~H~~~a~~~i~~iivHi 168 (211)
T PRK10639 93 RKIVVNEEVGDTGRYNFGQKCVFWAAIIFLVLLLVSGVI--IWRPYF--APAFSIPVIRFALMLHSFAAVALIVVIMVHI 168 (211)
T ss_pred hhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH--HHHHhh--cccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1224456777777788878888888886 111100 012221 12222 266777777777888
Q ss_pred hhccc
Q 030438 160 FSVAS 164 (177)
Q Consensus 160 ~~~~~ 164 (177)
|.+..
T Consensus 169 y~a~~ 173 (211)
T PRK10639 169 YAALW 173 (211)
T ss_pred HHHhc
Confidence 88765
No 61
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=55.71 E-value=21 Score=27.14 Aligned_cols=63 Identities=17% Similarity=0.350 Sum_probs=42.4
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhhheecC
Q 030438 21 LRKEVKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPG 90 (177)
Q Consensus 21 ~~~~~~k~iH~~l~~~a~~~~~iGl~av~~~~~~~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~fl~p~ 90 (177)
++++..+.+|++...+..++++++++..+.+-.++++|- |=.+++ ++.+.-....++.+|+..
T Consensus 22 E~~~r~riinliiG~vT~l~VLvtii~afvf~~~~p~p~----~iffav---cI~l~~~s~~lLI~WYR~ 84 (118)
T PF10856_consen 22 ETSARDRIINLIIGAVTSLFVLVTIISAFVFPQDPPKPL----HIFFAV---CILLICISAILLIFWYRQ 84 (118)
T ss_pred CCCcccEEEEeehHHHHHHHHHHHHhheEEecCCCCCce----EEehHH---HHHHHHHHHHhheeehhc
Confidence 344445589999999999999999998888766554432 333443 344444555667777744
No 62
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=53.72 E-value=53 Score=21.47 Aligned_cols=50 Identities=14% Similarity=0.180 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhhhhhhhheecCCC----CCcccchhhHHHHHHHHHHHHHHH
Q 030438 67 LGIAVISLYGIQWLYGFVIFFYPGGS----TGLRSESLPWHVLFGLFVYILAVA 116 (177)
Q Consensus 67 lGl~t~~L~~lQ~~~G~~~fl~p~~~----~~~r~~~~p~H~~~G~~~~~l~~~ 116 (177)
+=+..++.+..-.+.|+..+..|... ...|...+..|.+.|...+++...
T Consensus 5 i~~~l~~~~~~~~iSGi~l~~~~~~~~~~~~~~~~~~~~iH~~~g~~~~~l~~~ 58 (64)
T PF14358_consen 5 INLLLLVSFLVLAISGILLSFVPFPGLPFLGLNKHFWRNIHLWAGYLFLILIIL 58 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777888888887665432 123466788999999988887654
No 63
>PRK10171 hydrogenase 1 b-type cytochrome subunit; Provisional
Probab=52.60 E-value=1.3e+02 Score=24.82 Aligned_cols=59 Identities=14% Similarity=0.173 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCC-CC------ccchhhHHHHHHHHHHHHHhhhhhhh
Q 030438 27 KVIHLVLHAIALILGIIGIYAAFKYHNESAI-VN------LYSLHSWLGIAVISLYGIQWLYGFVI 85 (177)
Q Consensus 27 k~iH~~l~~~a~~~~~iGl~av~~~~~~~~~-~h------f~SlHswlGl~t~~L~~lQ~~~G~~~ 85 (177)
+..||..=..-+++.+.|+......-...+. +. ...+|-+.|.+.+.+...-.+.|+..
T Consensus 19 Ri~HW~~Al~i~~l~~tG~~i~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~Rl~w~~~g 84 (235)
T PRK10171 19 RIWHWLTVLCMAVLMVTGYFIGKPLPSVSGEATYLFYMGYIRLIHFSAGMIFTVVLLMRIYWAFVG 84 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcCCCCCchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4789999988888999998763221111111 11 13579999999999888888888754
No 64
>PLN02631 ferric-chelate reductase
Probab=52.47 E-value=1.7e+02 Score=28.76 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=20.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHH
Q 030438 97 SESLPWHVLFGLFVYILAVANAAIG 121 (177)
Q Consensus 97 ~~~~p~H~~~G~~~~~l~~~t~~lG 121 (177)
.++..+|||.|+.+++++++=.+.=
T Consensus 186 e~~i~yHRWlGri~~~la~iH~i~y 210 (699)
T PLN02631 186 ESSIKYHIWLGHVSNFLFLVHTVVF 210 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677899999999999998765543
No 65
>PF10215 Ost4: Oligosaccaryltransferase ; InterPro: IPR018943 Ost4 is a very short, approximately 30 residues, enzyme found from fungi to vertebrates. It is a member of the ER oligosaccaryltansferase complex, 2.4.1.119 from EC, that catalyses the asparagine-linked glycosylation of proteins. It appears to be an integral membrane protein that mediates the en bloc transfer of a pre-assembled high-mannose oligosaccharide onto asparagine residues of nascent polypeptides as they enter the lumen of the rough endoplasmic reticulum. ; PDB: 1RKL_A 2LAT_A.
Probab=50.71 E-value=20 Score=21.51 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhccccCC
Q 030438 141 ALLVNFTAVITILYGAFVIFSVASQGP 167 (177)
Q Consensus 141 ~~~~n~~gl~~~~~~~~v~~~~~~~~~ 167 (177)
..++|++|++ .+..+|+|..+...+
T Consensus 8 ~~lan~lG~~--~~~LIVlYH~v~~n~ 32 (35)
T PF10215_consen 8 YTLANFLGVA--AMVLIVLYHFVEVNA 32 (35)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHCCH-
T ss_pred HHHHHHHHHH--HHHHHHHHHHhhccc
Confidence 4689999988 566667777665443
No 66
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=49.48 E-value=1.4e+02 Score=24.08 Aligned_cols=105 Identities=22% Similarity=0.150 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhhheecCCCCCcccchhhHHHHHHHHHHH
Q 030438 33 LHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYI 112 (177)
Q Consensus 33 l~~~a~~~~~iGl~av~~~~~~~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~ 112 (177)
.+....+....|-..... +......|-.+|...++++.+-.+.|...-+... .+.+-.-|-+.|.....
T Consensus 58 ~~~~~~~~~~~~~~~~l~------~~~~r~~H~~~g~~ll~~~~L~~lGG~~~~~~~~-----~~lf~spH~~~Gl~~~~ 126 (175)
T PF13301_consen 58 ARAIFLILALTGTRKELV------KLKARDRHYRLGFALLAFMGLGALGGQLGTYRQN-----GKLFWSPHLWAGLAVVG 126 (175)
T ss_pred hHHHHHHHHHHHHHHHHH------hhhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcC-----CCCccCchHHHHHHHHH
Confidence 344444455444444333 1225567999999999999999999986543321 22333349999999988
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHHH
Q 030438 113 LAVANAAIGFLEKLTFLENSGLAKYGSEALLVNFTAVITIL 153 (177)
Q Consensus 113 l~~~t~~lGl~ek~~f~~~~~~~~~~~e~~~~n~~gl~~~~ 153 (177)
+-..+..+.-. .+.+++ .+.-+--...|++.+++.+
T Consensus 127 L~~~s~al~~~---i~~g~~--~~~R~lHi~lN~~~l~Lf~ 162 (175)
T PF13301_consen 127 LMAFSAALVPQ---IQKGNR--PWARRLHIYLNSLALLLFA 162 (175)
T ss_pred HHHHHHHHHHH---HccCCc--hhHHHHHHHHHHHHHHHHH
Confidence 88877766543 121110 1222345666766655443
No 67
>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=45.50 E-value=1.5e+02 Score=25.17 Aligned_cols=75 Identities=19% Similarity=0.204 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhhheecCCCCCcccchhhHHHHH
Q 030438 27 KVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLF 106 (177)
Q Consensus 27 k~iH~~l~~~a~~~~~iGl~av~~~~~~~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~ 106 (177)
...|-.+-.+.++..+.-.....+..++ ......+.....+..+|.+.|..+.+. + ....+...|...
T Consensus 226 ~~~Hr~~A~~~~~~~~~l~~~~~r~~~~-------~~~~~~~~~~~~ll~~Qv~lGi~~v~~-~----~p~~l~~~H~~~ 293 (302)
T PF02628_consen 226 QFIHRLLALLVLLLLLALAVRAWRRRRS-------RALRRLAVLLLALLLLQVLLGILTVLT-G----LPVWLALLHQAG 293 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCc-------HHHHHHHHHHHHHHHHHHHHHHHHHHh-c----CcHHHHHHHHHH
Confidence 4667666655555554444444443322 446778888899999999999988765 2 222466799998
Q ss_pred HHHHHHH
Q 030438 107 GLFVYIL 113 (177)
Q Consensus 107 G~~~~~l 113 (177)
+..++..
T Consensus 294 a~ll~~~ 300 (302)
T PF02628_consen 294 AALLLAA 300 (302)
T ss_pred HHHHHHH
Confidence 8877654
No 68
>PF03189 Otopetrin: Otopetrin; InterPro: IPR004878 The otopetrins are a group of proteins that are restricted to the metazoa. The structure of otopetrin-1 (Q80VM9 from SWISSPROT) shows it to have 12 transmembrane domains, with three conserved sub-domains (OD-1 to OD-III) []. Otopetrins modulate calcium homeostasis and influx of calcium in response to extracellular ATP. The otopetrins are required for normal formation of otoconia/otoliths in the inner ear. Otoconia are minute biomineral particles embedded in a gelatinous membrane that overlies the sensory epithelium in the inner ear. Gravity and acceleration cause the octoconia to deflect the stereocilia of sensory hair cells. Otoconia are required for normal processing of information regarding spatial orientation and acceleration.
Probab=44.50 E-value=2.4e+02 Score=25.89 Aligned_cols=64 Identities=19% Similarity=0.204 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhcCCCCCChhhHHHHHHHHHHHHHHHHhhhhcccc
Q 030438 102 WHVLFGLFVYILAVANAAIGFLE--KLTFLENSGLAKYGSEALLVNFTAVITILYGAFVIFSVASQ 165 (177)
Q Consensus 102 ~H~~~G~~~~~l~~~t~~lGl~e--k~~f~~~~~~~~~~~e~~~~n~~gl~~~~~~~~v~~~~~~~ 165 (177)
.-...-.+++.+++++++.|+.. +.-+...++.+..+..-.++-..|..+.-+..++......+
T Consensus 275 ~~~i~~~~l~~l~~~a~i~g~~~~r~l~~~~~~~~~~LD~iLL~va~~G~~ly~~fsIia~~~~~~ 340 (441)
T PF03189_consen 275 LVYIFELVLYSLSILAVIIGIYRMRKLKFSSKNPGRSLDVILLVVAAFGEFLYSYFSIIAGIFTDP 340 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccCccccHhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33566688899999999999863 11221111112223334455566777655555555544443
No 69
>PRK13673 hypothetical protein; Provisional
Probab=44.17 E-value=96 Score=23.56 Aligned_cols=91 Identities=23% Similarity=0.399 Sum_probs=54.0
Q ss_pred hcccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhhheecCCCCCc
Q 030438 16 YKGLNLRKEVKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGL 95 (177)
Q Consensus 16 ~r~~~~~~~~~k~iH~~l~~~a~~~~~iGl~av~~~~~~~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~ 95 (177)
|...+.+++..|.+|..+-..=++..+.|+....+.- .+.+-+|..-..+|+.++.+. |-..+ .
T Consensus 20 y~l~s~~~~~~ki~hMilRLfyil~iiTG~~l~~~~~--~~~~~l~~~K~l~gi~vIg~m--Em~l~------------r 83 (118)
T PRK13673 20 YSLYSGGSKKAKILHMILRLFYILIIITGFWLLIRSF--GSNHMLYILKMLLGIIVIGLM--EMSLA------------K 83 (118)
T ss_pred HHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHH--ccccHHHHHHHHHHHHHHHHH--HHHHH------------H
Confidence 3333333344568999999999999999988877643 222345666777777555432 21111 1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 030438 96 RSESLPWHVLFGLFVYILAVANAAIGFL 123 (177)
Q Consensus 96 r~~~~p~H~~~G~~~~~l~~~t~~lGl~ 123 (177)
|++=+|-|.+++..+.++ +.|..+|+.
T Consensus 84 ~kk~k~~~~~~~~~ii~l-vlti~lG~~ 110 (118)
T PRK13673 84 RKKGKPTGGFWWIFIIVL-VLTILLGLI 110 (118)
T ss_pred HHcCCCcccHHHHHHHHH-HHHHHHHHH
Confidence 122244555666555543 666678874
No 70
>PRK10639 formate dehydrogenase-O subunit gamma; Provisional
Probab=41.91 E-value=1.7e+02 Score=23.79 Aligned_cols=64 Identities=13% Similarity=0.057 Sum_probs=42.1
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhheecCC----CCCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 030438 60 LYSLHSWLGIAVISLYGIQWLYGFVIFFYPGG----STGLRSESLPWHVLFGLFVYILAVANAAIGFLE 124 (177)
Q Consensus 60 f~SlHswlGl~t~~L~~lQ~~~G~~~fl~p~~----~~~~r~~~~p~H~~~G~~~~~l~~~t~~lGl~e 124 (177)
++...-..-.....+..++.+.|++.+ .|.. +.+.......+|......+.+..++=+.+.+.+
T Consensus 107 yN~~qk~~y~~~~~~~~~~~iTGl~l~-~p~~~~~~~~~~~~~~~~~H~~~a~~~i~~iivHiy~a~~~ 174 (211)
T PRK10639 107 YNFGQKCVFWAAIIFLVLLLVSGVIIW-RPYFAPAFSIPVIRFALMLHSFAAVALIVVIMVHIYAALWV 174 (211)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 555555555556666678999999754 3321 222334567799999888888777777666543
No 71
>PF07457 DUF1516: Protein of unknown function (DUF1516); InterPro: IPR010899 This family contains a number of hypothetical bacterial proteins of unknown function approximately 120 residues long.
Probab=41.59 E-value=1.3e+02 Score=22.45 Aligned_cols=52 Identities=25% Similarity=0.455 Sum_probs=39.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccchhhHHHHHHHHHH
Q 030438 22 RKEVKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLY 75 (177)
Q Consensus 22 ~~~~~k~iH~~l~~~a~~~~~iGl~av~~~~~~~~~~hf~SlHswlGl~t~~L~ 75 (177)
+.+..|..|..+-..=++..+.|+....++ .++.|=++..-..+|+.++.+.
T Consensus 28 ~~k~~k~~~MilRl~YlliiisG~~L~~~~--~~~~~~l~~iK~l~gl~vI~lm 79 (110)
T PF07457_consen 28 KTKKAKILHMILRLFYLLIIISGVWLFIRT--FAGNPMLYIIKMLLGLIVIGLM 79 (110)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHH--HccCCHHHHHHHHHHHHHHHHH
Confidence 446668999999999999999999998875 2334557777778887666543
No 72
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=38.86 E-value=1.2e+02 Score=25.85 Aligned_cols=63 Identities=21% Similarity=0.231 Sum_probs=38.5
Q ss_pred hhHHHHHH--HHHHHHHHHHHHHHHHHHHH--HhhhcCCCCCChhhHHHHHHHHHHHHHHHHhhhhccccCC
Q 030438 100 LPWHVLFG--LFVYILAVANAAIGFLEKLT--FLENSGLAKYGSEALLVNFTAVITILYGAFVIFSVASQGP 167 (177)
Q Consensus 100 ~p~H~~~G--~~~~~l~~~t~~lGl~ek~~--f~~~~~~~~~~~e~~~~n~~gl~~~~~~~~v~~~~~~~~~ 167 (177)
-|+=+..| +...+=+..++++|.-.-.+ |.. +.-.+..-.-|.+|+.+++.+.. ++..++|+.
T Consensus 73 vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~----~~~~~~~~~Ln~~G~~l~~~~~~-~f~fik~~~ 139 (254)
T PF07857_consen 73 VPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGL----DPQVPSSPWLNYIGVALVLVSGI-IFSFIKSEE 139 (254)
T ss_pred hhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccc----cccccchhHHHHHHHHHHHHHHH-heeeecCCC
Confidence 34444444 44455577788999764322 211 11134466889999999999854 566666655
No 73
>COG3658 Cytochrome b [Energy production and conversion]
Probab=38.78 E-value=2.2e+02 Score=23.28 Aligned_cols=102 Identities=25% Similarity=0.347 Sum_probs=62.0
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhh-------eecCC---------CCCcccchhhHHHHHHHHH----HHHHHHHHHHH
Q 030438 62 SLHSWLGIAVISLYGIQWLYGFVIF-------FYPGG---------STGLRSESLPWHVLFGLFV----YILAVANAAIG 121 (177)
Q Consensus 62 SlHswlGl~t~~L~~lQ~~~G~~~f-------l~p~~---------~~~~r~~~~p~H~~~G~~~----~~l~~~t~~lG 121 (177)
.+|-|+|..++.+..+-.+-|.... +-|+- ....|+..-|-|+=.|.+. ..+-.++..+|
T Consensus 35 ~~H~wvGyav~allalRL~WG~igs~~ARf~af~pspa~a~~~lke~~~gr~~~h~gHNPlGAlmv~Amw~~l~~~v~TG 114 (192)
T COG3658 35 QLHTWVGYAVLALLALRLCWGIIGSDTARFSAFVPSPAGAREYLKEGIPGREHIHPGHNPLGALMVVAMWALLLAQVGTG 114 (192)
T ss_pred ChhHHHHHHHHHHHHHHHHhcccccchhhhhccCCChHHHHHHHHhhccCCccCCCCCCchhHHHHHHHHHHHHHHHhhh
Confidence 6899999999999999999987543 33321 0112333445677777643 44566777788
Q ss_pred HHHHH--HHhhhcCCC-----CCC------hhhHHHHHHHHHHHHHHHHhhhhccc
Q 030438 122 FLEKL--TFLENSGLA-----KYG------SEALLVNFTAVITILYGAFVIFSVAS 164 (177)
Q Consensus 122 l~ek~--~f~~~~~~~-----~~~------~e~~~~n~~gl~~~~~~~~v~~~~~~ 164 (177)
...++ +|.++ .|. ... -.+-++|.+.+++++=.+.|+...+.
T Consensus 115 ~lar~d~~~ged-~~~~~~~~~h~~~~~~evHet~~nll~vliaiHiAav~~~s~f 169 (192)
T COG3658 115 WLARDDNFWGED-WYLNHLVSEHTGSLMREVHETLANLLAVLIAIHIAAVAAMSVF 169 (192)
T ss_pred hhhhhhhhhccc-hhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76544 23322 221 110 12578898888888876655554443
No 74
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=33.34 E-value=2.2e+02 Score=25.58 Aligned_cols=57 Identities=18% Similarity=0.227 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCC--CccchhhHHHHHHHHHHHHHhhhhhhhheecCC
Q 030438 33 LHAIALILGIIGIYAAFKYHNESAIV--NLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGG 91 (177)
Q Consensus 33 l~~~a~~~~~iGl~av~~~~~~~~~~--hf~SlHswlGl~t~~L~~lQ~~~G~~~fl~p~~ 91 (177)
.|..|+++..+|...+-....+...+ ....--+|+|+..+...+ +..|+..-++.+.
T Consensus 147 ~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~~~~~n~~~G~~avl~~c--~~SgfAgvYfEki 205 (345)
T KOG2234|consen 147 LQWMALVLLFAGVALVQLPSLSPTGAKSESSAQNPFLGLVAVLVAC--FLSGFAGVYFEKI 205 (345)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCccCCCcccchhhhHHHHHHHH--HHHHHHHHHHHHH
Confidence 56889999999998876222221111 244556899998887554 4445544444443
No 75
>PF14927 Neurensin: Neurensin
Probab=33.10 E-value=1.9e+02 Score=22.61 Aligned_cols=27 Identities=22% Similarity=0.470 Sum_probs=21.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHH
Q 030438 97 SESLPWHVLFGLFVYILAVANAAIGFL 123 (177)
Q Consensus 97 ~~~~p~H~~~G~~~~~l~~~t~~lGl~ 123 (177)
+...++=-.+|....++|+++..+|+.
T Consensus 41 s~~wkV~~i~g~l~Ll~Gi~~l~vgY~ 67 (140)
T PF14927_consen 41 SVCWKVGFISGLLLLLLGIVALTVGYL 67 (140)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344556777899999999999999985
No 76
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=32.94 E-value=1.4e+02 Score=19.37 Aligned_cols=51 Identities=25% Similarity=0.333 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccc-----cCCCCccchhhHHHHHHHHHHHH
Q 030438 27 KVIHLVLHAIALILGIIGIYAAFKYHNE-----SAIVNLYSLHSWLGIAVISLYGI 77 (177)
Q Consensus 27 k~iH~~l~~~a~~~~~iGl~av~~~~~~-----~~~~hf~SlHswlGl~t~~L~~l 77 (177)
+.+-..+-...+++.+.|+..-+.-... .+++.....|.|.|...+++..+
T Consensus 3 ~~i~~~l~~~~~~~~iSGi~l~~~~~~~~~~~~~~~~~~~~iH~~~g~~~~~l~~~ 58 (64)
T PF14358_consen 3 YIINLLLLVSFLVLAISGILLSFVPFPGLPFLGLNKHFWRNIHLWAGYLFLILIIL 58 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566667777777774443321 12356788899999887776654
No 77
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=32.35 E-value=2.3e+02 Score=21.72 Aligned_cols=87 Identities=15% Similarity=0.149 Sum_probs=58.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccc-------------hhhHHHHHHHHHHHHHhhhhhhhheecC
Q 030438 24 EVKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYS-------------LHSWLGIAVISLYGIQWLYGFVIFFYPG 90 (177)
Q Consensus 24 ~~~k~iH~~l~~~a~~~~~iGl~av~~~~~~~~~~hf~S-------------lHswlGl~t~~L~~lQ~~~G~~~fl~p~ 90 (177)
+.+...|--.|..|+.++.+=+..=...|...|..+|.. .|..+-.+++.+-......|+-.
T Consensus 28 ~~~~~~Hr~~Ml~a~~ls~lFlv~Yl~~~~~~g~~~f~g~~~ir~~Y~~iL~~Hi~LA~~~~pL~l~tl~~a~~~----- 102 (133)
T PF04238_consen 28 RGRIKLHRKLMLTAFVLSALFLVSYLYYHFLGGSTPFGGPGWIRPVYLFILISHIILAIVALPLVLYTLYRALRG----- 102 (133)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----
Confidence 334568999999999988886666444454444433333 36666666666666555555521
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 030438 91 GSTGLRSESLPWHVLFGLFVYILAVANAAIGFL 123 (177)
Q Consensus 91 ~~~~~r~~~~p~H~~~G~~~~~l~~~t~~lGl~ 123 (177)
-..-||=.|+.++..=..+..+|.-
T Consensus 103 --------~~~~Hrki~r~t~piWlyvsvTGvv 127 (133)
T PF04238_consen 103 --------RFTRHRKIGRWTFPIWLYVSVTGVV 127 (133)
T ss_pred --------ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2236999999999998899998874
No 78
>PF05449 DUF754: Protein of unknown function (DUF754); InterPro: IPR008473 This entry is represented by Bacteriophage D3, Orf90. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=29.74 E-value=1.2e+02 Score=21.43 Aligned_cols=46 Identities=26% Similarity=0.226 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhhhccccCCCCccchhhHHHHHHHHHHHHHhhhh
Q 030438 37 ALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYG 82 (177)
Q Consensus 37 a~~~~~iGl~av~~~~~~~~~~hf~SlHswlGl~t~~L~~lQ~~~G 82 (177)
+++|..+.+-..+..++........||=.|+=++...-..+++++|
T Consensus 4 a~~c~~i~lrl~~yrr~garhr~~~s~lA~lli~~~~~~~i~~l~g 49 (83)
T PF05449_consen 4 ALICLAIALRLMFYRRNGARHRPWISWLAYLLIVAYGSVPIRILFG 49 (83)
T ss_pred HHHHHHHHHHHheeecCCCccCcHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5677777777777766655555566666666555555555555555
No 79
>PLN02292 ferric-chelate reductase
Probab=29.24 E-value=65 Score=31.52 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=17.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHH
Q 030438 97 SESLPWHVLFGLFVYILAVANAA 119 (177)
Q Consensus 97 ~~~~p~H~~~G~~~~~l~~~t~~ 119 (177)
.++..+|||.|+.+++++++=.+
T Consensus 203 e~f~~yHRWlGrii~ll~~lH~i 225 (702)
T PLN02292 203 ESSIKYHIWLGHLVMTLFTSHGL 225 (702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677899999998888876443
No 80
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=28.71 E-value=4.3e+02 Score=24.12 Aligned_cols=60 Identities=10% Similarity=0.047 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHHHHHHHhhhhccccCCCCCCCC
Q 030438 113 LAVANAAIGFLEKLTFLENSGLAKYGSEALLVNFTAVITILYGAFVIFSVASQGPAEDDYS 173 (177)
Q Consensus 113 l~~~t~~lGl~ek~~f~~~~~~~~~~~e~~~~n~~gl~~~~~~~~v~~~~~~~~~~~~~~~ 173 (177)
+.++|+..-+++ +.|....+|+..++--.++|+-|+.+++=+.-..+.-.|.++.++|..
T Consensus 248 ~f~aT~va~~yh-~~~~~~aPyp~~s~~klLg~vGgi~LliG~~gl~~~~~R~d~~~~~~~ 307 (389)
T PRK15033 248 CFAATVVATLYH-YVLGWHAPYPFFSLPVLLGTLGGIGLLIGPAGLLWLNLRRHPLHGDAA 307 (389)
T ss_pred HHHHHHHHHHHH-HHccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc
Confidence 444454444554 456555577777777899998887765432233444444344445544
No 81
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=28.09 E-value=1.6e+02 Score=21.89 Aligned_cols=17 Identities=18% Similarity=0.301 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q 030438 33 LHAIALILGIIGIYAAF 49 (177)
Q Consensus 33 l~~~a~~~~~iGl~av~ 49 (177)
+..+++++.++|.....
T Consensus 74 ~~~l~~~~~~~a~~~~~ 90 (172)
T PF13903_consen 74 FLILGLLLLLFAFVFAL 90 (172)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33445555555555433
No 82
>cd00284 Cytochrome_b_N Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Probab=27.39 E-value=3.4e+02 Score=22.11 Aligned_cols=58 Identities=14% Similarity=0.086 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhee--cCCCC----------C--cccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 030438 66 WLGIAVISLYGIQWLYGFVIFFY--PGGST----------G--LRSESLPWHVLFGLFVYILAVANAAIGFL 123 (177)
Q Consensus 66 wlGl~t~~L~~lQ~~~G~~~fl~--p~~~~----------~--~r~~~~p~H~~~G~~~~~l~~~t~~lGl~ 123 (177)
.+|-.+...+.+|.+.|++--++ |.... | ...-++..|++..-..+++...=..-|+.
T Consensus 24 ~~G~ll~~~~~iqiiTGi~La~~Y~p~~~~A~~Sv~~i~~ev~~G~liR~~H~~gas~~~~~~~lH~~r~~~ 95 (200)
T cd00284 24 NFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLY 95 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888999999999866544 44211 1 12334568888877777777666666664
No 83
>PRK10179 formate dehydrogenase-N subunit gamma; Provisional
Probab=27.02 E-value=3.5e+02 Score=22.10 Aligned_cols=134 Identities=12% Similarity=0.047 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccc-----cCCCCccchhhHHHHHHHHHHHHHhhhhhhhheecCC----------
Q 030438 27 KVIHLVLHAIALILGIIGIYAAFKYHNE-----SAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGG---------- 91 (177)
Q Consensus 27 k~iH~~l~~~a~~~~~iGl~av~~~~~~-----~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~fl~p~~---------- 91 (177)
...||..-..-++|++.|+...+-.-.- .+...--.+|-+.|.+-.+.+..- ..-+..-..|..
T Consensus 15 Ri~HW~~a~s~i~L~~TGl~i~~p~~~~~~~~~g~~~~~r~iH~~~g~vf~~~~~~~-~~~~~~~~~~~~~D~~~~~~~~ 93 (217)
T PRK10179 15 RACHWTVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFM-FVRFVHHNIPDKKDIPWLLNIV 93 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHHHHH
Confidence 3679999999999999999997754211 011122347999998765433321 111111111110
Q ss_pred ------CCC--cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhh-----HHHHHHHHHHHHHHHHh
Q 030438 92 ------STG--LRSESLPWHVLFGLFVYILAVANAAIGFLEKLTFLENSGLAKYGSEA-----LLVNFTAVITILYGAFV 158 (177)
Q Consensus 92 ------~~~--~r~~~~p~H~~~G~~~~~l~~~t~~lGl~ek~~f~~~~~~~~~~~e~-----~~~n~~gl~~~~~~~~v 158 (177)
..+ ...++-|..+.....+++++++-+++|+. .+ +.... ..++.+. .+=+..++++++|...-
T Consensus 94 ~~~~~~~~~~p~~gk~N~~QKl~y~~i~~~~~~~i~TGl~-l~-~~~~~--~~~~~~~~r~a~~iH~~~a~l~~~fiivH 169 (217)
T PRK10179 94 EVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVI-IW-RPYFA--QYFPMQVVRYSLLIHAAAGIILIHAILIH 169 (217)
T ss_pred HHhcCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHH-HH-HHhhh--hhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 11235567888888888888889999986 22 11110 1223221 22237788888888888
Q ss_pred hhhcccc
Q 030438 159 IFSVASQ 165 (177)
Q Consensus 159 ~~~~~~~ 165 (177)
+|.....
T Consensus 170 iY~a~~~ 176 (217)
T PRK10179 170 MYMAFWV 176 (217)
T ss_pred HHHHhcc
Confidence 8887643
No 84
>PF13572 DUF4134: Domain of unknown function (DUF4134)
Probab=26.39 E-value=2.2e+02 Score=20.82 Aligned_cols=48 Identities=21% Similarity=0.376 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCccchhhHHHHHHHHHHHHHh
Q 030438 32 VLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQW 79 (177)
Q Consensus 32 ~l~~~a~~~~~iGl~av~~~~~~~~~~hf~SlHswlGl~t~~L~~lQ~ 79 (177)
.+..++-+++++|-.-+|...|..+.+--.+.=+|.|-+..+....+.
T Consensus 46 l~yaI~aVvglIGai~VY~k~~~Gd~dv~k~i~~w~GaciFli~~a~~ 93 (98)
T PF13572_consen 46 LMYAIGAVVGLIGAIRVYIKWNNGDQDVKKSIMSWFGACIFLIVAATV 93 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666655543333456778888876666555443
No 85
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=26.01 E-value=2.4e+02 Score=19.83 Aligned_cols=66 Identities=20% Similarity=0.235 Sum_probs=39.8
Q ss_pred CCCccchhhHHHHHHHHHHHHHhhhhhhhheecCC---CCCcccchhhHHHHHHHHHHHHHHHHHHHHH
Q 030438 57 IVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGG---STGLRSESLPWHVLFGLFVYILAVANAAIGF 122 (177)
Q Consensus 57 ~~hf~SlHswlGl~t~~L~~lQ~~~G~~~fl~p~~---~~~~r~~~~p~H~~~G~~~~~l~~~t~~lGl 122 (177)
.++....|-|+|..++++..+..+.=...+.-... .........+.=...|...+..-+.-+.+..
T Consensus 30 ~~~~~~~Hr~lg~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~a~~~l~~l~~tS~ 98 (125)
T PF01794_consen 30 FDRLLRFHRWLGRLAFFLALLHGVLYLINWLRFGGWDWQEWFNAWLTGPYNLTGIIALLLLLILAVTSF 98 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34566799999999999888885544433222110 1122333444555678877776666666553
No 86
>PF05640 NKAIN: Na,K-Atpase Interacting protein; InterPro: IPR008516 NKAIN (Na,K-Atpase INteracting) proteins are a family of evolutionary conserved transmembrane proteins that localise to neurons, that are critical for neuronal function, and that interact with the beta subunits, beta1 in vertebrates and beta in Drosophila, of Na,K-ATPase. NKAINs have highly conserved trans-membrane domains but otherwise no other characterised domains. NKAINs may function as subunits of pore or channel structures in neurons or they may affect the function of other membrane proteins. They are likely to function within the membrane bilayer [].
Probab=25.14 E-value=1.5e+02 Score=24.54 Aligned_cols=48 Identities=29% Similarity=0.358 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHHHHHHH
Q 030438 106 FGLFVYILAVANAAIGFLEKLTFLENSGLAKYGSEALLVNFTAVITILYGAF 157 (177)
Q Consensus 106 ~G~~~~~l~~~t~~lGl~ek~~f~~~~~~~~~~~e~~~~n~~gl~~~~~~~~ 157 (177)
.|+.+.+.-+..-+.-..|+..|.-- +|.| ..+++|++-++.++.|..
T Consensus 5 s~R~~l~~ic~~qli~~leRqVFDFL-GyqW---aPIl~NF~hIi~vIlGlF 52 (200)
T PF05640_consen 5 SGRCTLIFICALQLITALERQVFDFL-GYQW---APILANFLHIIFVILGLF 52 (200)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH-hhhH---HHHHHHHHHHHHHHHHHh
Confidence 45666665555555566688887543 3444 468999999999888843
No 87
>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.
Probab=24.29 E-value=3.6e+02 Score=21.23 Aligned_cols=26 Identities=12% Similarity=0.098 Sum_probs=21.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHH
Q 030438 97 SESLPWHVLFGLFVYILAVANAAIGF 122 (177)
Q Consensus 97 ~~~~p~H~~~G~~~~~l~~~t~~lGl 122 (177)
...+-+|...|....++.+.-...++
T Consensus 46 ~~~~~~H~~~G~~~~~l~l~rl~~~~ 71 (211)
T TIGR02125 46 GYIRFVHFAAGFVLIAVLLFRVYLAF 71 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667999999999988887776665
No 88
>COG2322 Predicted membrane protein [Function unknown]
Probab=24.01 E-value=4e+02 Score=21.69 Aligned_cols=96 Identities=11% Similarity=0.118 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhhheecCCCCCcccchhh---HH
Q 030438 27 KVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLP---WH 103 (177)
Q Consensus 27 k~iH~~l~~~a~~~~~iGl~av~~~~~~~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p---~H 103 (177)
..+-++...+++.+.++|...+-+-..++.+.-+.+ =+.+-++-+.+|+---.+|.-. .+++ +-..|..+.+ .|
T Consensus 46 p~lnai~~~~s~~~llag~~~Ikrg~i~~Hk~aMlt-A~~l~l~FlvlYltr~~l~~~t-~f~~-~G~~k~~Y~~iL~~H 122 (177)
T COG2322 46 PMLNAIFNSLSFIFLLAGWRLIKRGNIEKHKRAMLT-AFTLALVFLVLYLTRHGLGGET-AFGG-TGIYKGIYFFILITH 122 (177)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH-HHHHHHHHHHHHHHHHhccccc-cCCC-CeeeehHHHHHHHHH
Confidence 456788889999999999999887644433322211 1222222222332222222211 1222 2234655543 69
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030438 104 VLFGLFVYILAVANAAIGFLEK 125 (177)
Q Consensus 104 ~~~G~~~~~l~~~t~~lGl~ek 125 (177)
..+..+..-++.-++.+|.+.+
T Consensus 123 i~LA~i~vPLal~al~~a~~~~ 144 (177)
T COG2322 123 IILAAINVPLALYALILAWKGL 144 (177)
T ss_pred HHHHHHhhhHHHHHHHHHhcch
Confidence 9999999999999999999765
No 89
>COG4244 Predicted membrane protein [Function unknown]
Probab=23.89 E-value=2.9e+02 Score=22.15 Aligned_cols=97 Identities=14% Similarity=0.085 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH----hhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhhheecCCCCCcccchhh
Q 030438 26 KKVIHLVLHAIALILGIIGIYAA----FKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLP 101 (177)
Q Consensus 26 ~k~iH~~l~~~a~~~~~iGl~av----~~~~~~~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p 101 (177)
+...=|.....|.+.+.+...+- ...+......+=--+|+-+|.++.+.+. +.|+.-+.+ +.+......|
T Consensus 47 ~~~vs~wn~~~a~i~~~~A~~~g~~e~lla~~~~~a~~~a~wh~~lG~il~~~la---~~~~~r~~~---~~~~~~~v~~ 120 (160)
T COG4244 47 WFDVSWWNLFAALIAGFFAVIAGLFEFLLARPGGAAKQAAEWHHVLGNILLIVLA---ILTAWRYVH---RNDAVAAVSP 120 (160)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHH---HHHHHHHHH---HcCChhhccH
Confidence 44555666666666665554442 2222211223344578888887776554 233333222 4455667778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030438 102 WHVLFGLFVYILAVANAAIGFLEKLTF 128 (177)
Q Consensus 102 ~H~~~G~~~~~l~~~t~~lGl~ek~~f 128 (177)
+=-..|.++..+-..+..+|=+.-+-+
T Consensus 121 ~~L~lsl~~~~Lv~l~g~lG~~l~y~~ 147 (160)
T COG4244 121 AGLLLSLATVLLVALQGYLGAQLVYEH 147 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 888899999999999999997644333
No 90
>TIGR00766 ribonuclease, putative. This family shows similarity to ribonuclease BN
Probab=23.36 E-value=4.3e+02 Score=21.83 Aligned_cols=72 Identities=13% Similarity=0.267 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCccchhhHHHHHHHH--HHHHHhhhhhhhheecCCCCCcccchhhHHHHHHHHH
Q 030438 33 LHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVIS--LYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFV 110 (177)
Q Consensus 33 l~~~a~~~~~iGl~av~~~~~~~~~~hf~SlHswlGl~t~~--L~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~ 110 (177)
...+.++...+.+...|+.=- +.++++ -+.|.|-+... ...+|..+++ ....... .+.+..+=...+..+
T Consensus 170 ~~~~~~~~~~~~~~~ly~~lP-~~k~~~--~~~l~Ga~~aa~~~~~~~~~fs~---Y~~~~~~--~~~y~~~gsvi~lll 241 (263)
T TIGR00766 170 FRGISVLVSVLVSWVLFTWMP-REPVRL--VTLARGTLMAAIGFELFKQVMTI---YLPILLR--SPSGAAFGSVLGLMV 241 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHCC-CCCccH--HHHHHHHHHHHHHHHHHHHHHHH---HHHHhcC--CchhHhHHHHHHHHH
Confidence 344555666666666664321 122333 26777765433 4444544444 2222221 333444554555555
Q ss_pred HH
Q 030438 111 YI 112 (177)
Q Consensus 111 ~~ 112 (177)
+.
T Consensus 242 Wl 243 (263)
T TIGR00766 242 FF 243 (263)
T ss_pred HH
Confidence 54
No 91
>PF14752 RBP_receptor: Retinol binding protein receptor
Probab=22.97 E-value=7e+02 Score=24.17 Aligned_cols=54 Identities=19% Similarity=0.226 Sum_probs=35.6
Q ss_pred HHHHHHHHhhhhhhhheecCCCCCc-ccc-hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 030438 71 VISLYGIQWLYGFVIFFYPGGSTGL-RSE-SLPWHVLFGLFVYILAVANAAIGFLE 124 (177)
Q Consensus 71 t~~L~~lQ~~~G~~~fl~p~~~~~~-r~~-~~p~H~~~G~~~~~l~~~t~~lGl~e 124 (177)
.+....+|.+..-..|+-++.+.+. .+. -.--.+.+-...|.+-..+++.|+..
T Consensus 435 ~~~~~ilQ~~~a~~~Fl~~k~~~~~~~~~~~l~nRr~f~~~~y~~f~~Nv~~Gl~~ 490 (617)
T PF14752_consen 435 LVLAVILQNILARFFFLQDKLGPADKGKPLALDNRRAFHIFTYFLFFYNVLVGLLS 490 (617)
T ss_pred HHHHHHHHHHHHHHHheecccccccCCCCceeechhhHHHHHHHHHHHHHHHHHHH
Confidence 4446679999998899888543332 222 22334666677888888888888763
No 92
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=21.76 E-value=6.1e+02 Score=23.02 Aligned_cols=40 Identities=8% Similarity=-0.071 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHHH
Q 030438 113 LAVANAAIGFLEKLTFLENSGLAKYGSEALLVNFTAVITIL 153 (177)
Q Consensus 113 l~~~t~~lGl~ek~~f~~~~~~~~~~~e~~~~n~~gl~~~~ 153 (177)
..++|+..-+++ +.+....+|+..++--+++|+-|+.+++
T Consensus 228 ~f~aT~va~~yh-~~l~~~aPypl~s~pklLG~~GGi~Ll~ 267 (372)
T TIGR02484 228 TFLSTVAAFVYH-HLLGQPAPYPLLSLPVILGLVGGVAMLA 267 (372)
T ss_pred HHHHHHHHHHHH-HHccCCCCCCcccHHHHHHHHHHHHHHH
Confidence 444444444544 4555556787777888999988887654
No 93
>TIGR01583 formate-DH-gamm formate dehydrogenase, gamma subunit. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model.
Probab=21.75 E-value=4.2e+02 Score=21.17 Aligned_cols=65 Identities=11% Similarity=0.085 Sum_probs=43.9
Q ss_pred CccchhhHHHHHHHHHHHHHhhhhhhhhe--ecCC--CCCcccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 030438 59 NLYSLHSWLGIAVISLYGIQWLYGFVIFF--YPGG--STGLRSESLPWHVLFGLFVYILAVANAAIGFL 123 (177)
Q Consensus 59 hf~SlHswlGl~t~~L~~lQ~~~G~~~fl--~p~~--~~~~r~~~~p~H~~~G~~~~~l~~~t~~lGl~ 123 (177)
.+....--.-.....+..+|.+.|++.+. +|.. +.+.......+|...+....++.++=+.+++.
T Consensus 103 kyN~~Qk~~y~~i~~~~~~~~~TGl~m~~~~~~~~~~~~~~~~~~~~~H~~~a~l~~~~vi~Hiy~a~~ 171 (204)
T TIGR01583 103 KYNAGQKSWYWILVLGGFLMIITGIFMWFLDFPSTAFSIELLRISALIHNFSAIILAVGFIVHIYMAVF 171 (204)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666666666677899999998863 3432 22223334679999999888887777777665
No 94
>PRK13554 fumarate reductase cytochrome b-556 subunit; Provisional
Probab=21.56 E-value=5e+02 Score=21.94 Aligned_cols=103 Identities=13% Similarity=0.064 Sum_probs=59.3
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhheecCCCCC-----ccc--------chhhHHHHHHHHHHHHHHHHHHHHHHH--
Q 030438 60 LYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTG-----LRS--------ESLPWHVLFGLFVYILAVANAAIGFLE-- 124 (177)
Q Consensus 60 f~SlHswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~-----~r~--------~~~p~H~~~G~~~~~l~~~t~~lGl~e-- 124 (177)
+.-+||..|+. +++|.+.=+.|-.+-+.-...-+ .+. ..-++-......+++.-+.=+..|+.-
T Consensus 24 ~d~lmslTGl~-L~lFL~~Hm~~N~sil~G~eafN~~a~fl~~~~~~~~~~~~P~l~~~~~~~l~~~~i~H~~~a~~l~p 102 (241)
T PRK13554 24 ADKLQSATGIM-LGCFLLLHMHFESSILLGKEAFYHVVQFLEGGMFSSTGHGFPIVTKVFSVFMLLVVIVHAAVALRRFP 102 (241)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHhCHHHHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 45579999997 77777766666655443111000 111 122455566777777777777777542
Q ss_pred -----HHHHhhhcCC-CCCChhhHHHH--HHHHHHHHHHHHhhhhccc
Q 030438 125 -----KLTFLENSGL-AKYGSEALLVN--FTAVITILYGAFVIFSVAS 164 (177)
Q Consensus 125 -----k~~f~~~~~~-~~~~~e~~~~n--~~gl~~~~~~~~v~~~~~~ 164 (177)
+..+. +.+| .+.+++.--.| ..|+++++|...-++....
T Consensus 103 ~n~~~~~~ar-~~~y~~~~~~~~~w~~q~~TG~iil~Fi~~HL~~~~~ 149 (241)
T PRK13554 103 AQLGQWRALR-SHMGSIKHKDTHAWFWQLITGFILFFLVPVHLFTMIL 149 (241)
T ss_pred hhHHHHHHHh-hhhhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11111 1123 22233332336 8999999999998888765
No 95
>MTH00153 COX1 cytochrome c oxidase subunit I; Provisional
Probab=21.34 E-value=4.8e+02 Score=24.57 Aligned_cols=41 Identities=15% Similarity=0.219 Sum_probs=24.5
Q ss_pred CCCccchhhHHHHHHHHHHHHHhhhhhhhheecCC-CCCcccchhhHHHH
Q 030438 57 IVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGG-STGLRSESLPWHVL 105 (177)
Q Consensus 57 ~~hf~SlHswlGl~t~~L~~lQ~~~G~~~fl~p~~-~~~~r~~~~p~H~~ 105 (177)
..|| |-.++..++.-++ |...+++|+. +++..+++.++|-+
T Consensus 372 vaHF---H~~l~~g~~~~~~-----~~~y~~~P~~~gr~~~~~l~~~~f~ 413 (511)
T MTH00153 372 VAHF---HYVLSMGAVFAIM-----GGFIHWFPLFTGLTMNPKWLKIQFF 413 (511)
T ss_pred hcch---hhheehhHHHHHH-----HHHHHHhhhhccccchHHHHHHHHH
Confidence 3676 8888776554332 3447788875 33344556666665
No 96
>MTH00183 COX1 cytochrome c oxidase subunit I; Provisional
Probab=20.93 E-value=3.4e+02 Score=25.61 Aligned_cols=59 Identities=14% Similarity=0.118 Sum_probs=33.2
Q ss_pred CCccchhhHHHHHHHHHHHHHhhhhhhhheecCC-CCCcccchhhHHHH---HHHHHHHHHH-HHHHHHHHH
Q 030438 58 VNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGG-STGLRSESLPWHVL---FGLFVYILAV-ANAAIGFLE 124 (177)
Q Consensus 58 ~hf~SlHswlGl~t~~L~~lQ~~~G~~~fl~p~~-~~~~r~~~~p~H~~---~G~~~~~l~~-~t~~lGl~e 124 (177)
.|| |-.++..++.-++ |...+++|+. +++..+++.++|-+ .|..++.+.. ...+.|+..
T Consensus 375 aHF---H~~l~~g~v~~~~-----~~~yyw~P~~~Gr~~~~~l~~~~fw~~~iG~~~~f~pm~~~Gl~GmPR 438 (516)
T MTH00183 375 AHF---HYVLSMGAVFAIM-----AAFVHWFPLFSGYTLHSTWTKIHFGVMFVGVNLTFFPQHFLGLAGMPR 438 (516)
T ss_pred hhH---HHHHhhHHHHHHH-----HHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 566 8888886665433 4448888885 33445556666663 3444444433 333444443
No 97
>PF13630 SdpI: SdpI/YhfL protein family
Probab=20.72 E-value=2.6e+02 Score=18.31 Aligned_cols=28 Identities=18% Similarity=0.151 Sum_probs=24.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 030438 96 RSESLPWHVLFGLFVYILAVANAAIGFL 123 (177)
Q Consensus 96 r~~~~p~H~~~G~~~~~l~~~t~~lGl~ 123 (177)
.+....-|++.|......|++....|+.
T Consensus 20 ~~~W~~a~r~~g~~~~~~Gi~~~~~~~~ 47 (76)
T PF13630_consen 20 DENWKKAHRFAGKIFIIGGIVLLIIGII 47 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678999999999999999998886
No 98
>PF10329 DUF2417: Region of unknown function (DUF2417); InterPro: IPR019431 This entry represents a family of fungal proteins with no known function. In some cases these proteins also contain an alpha/beta hydrolase fold (IPR000073 from INTERPRO).
Probab=20.71 E-value=2.2e+02 Score=24.04 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhhh
Q 030438 33 LHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIF 86 (177)
Q Consensus 33 l~~~a~~~~~iGl~av~~~~~~~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~f 86 (177)
++.+-.++..+=+.++...+..... ++|+|+++++-.++..+.|+++=
T Consensus 104 l~~vl~~Lllvdlilil~V~~~R~~------eG~vGi~s~iWa~l~~l~~~~~D 151 (232)
T PF10329_consen 104 LNIVLAGLLLVDLILILAVPYTRHE------EGWVGIASVIWAFLSSLWGILAD 151 (232)
T ss_pred HHHHHHHHHHHHHHHHHhhHhHHhH------hhHhhHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443332222 67777777777777776666553
No 99
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=20.52 E-value=3.6e+02 Score=20.52 Aligned_cols=51 Identities=14% Similarity=0.417 Sum_probs=37.6
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhheecCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHH
Q 030438 63 LHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGF 122 (177)
Q Consensus 63 lHswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~l~~~t~~lGl 122 (177)
.|=.+|..|..+.....+.++ .+|.. .-.|.|.+++..+.+..+.++++=.
T Consensus 30 inliiG~vT~l~VLvtii~af---vf~~~------~p~p~~iffavcI~l~~~s~~lLI~ 80 (118)
T PF10856_consen 30 INLIIGAVTSLFVLVTIISAF---VFPQD------PPKPLHIFFAVCILLICISAILLIF 80 (118)
T ss_pred EEeehHHHHHHHHHHHHhheE---EecCC------CCCceEEehHHHHHHHHHHHHhhee
Confidence 466899999998888777766 55542 2356899999988888777776544
No 100
>TIGR02848 spore_III_AC stage III sporulation protein AC. Members of this protein family are designated SpoIIIAC, part of the spoIIIA operon of sporulation genes whose mutant phenotype is linked to sporulation stage III. Members of this family are encoded by the genome of a species if and only if that species is capable of endospore formation, as in Bacillus subtilis. The molecular function of this small, probable integral membrane protein is unknown.
Probab=20.19 E-value=1.3e+02 Score=20.50 Aligned_cols=44 Identities=18% Similarity=0.180 Sum_probs=31.2
Q ss_pred HHHHHHHHhhhcc--ccCCCCccchhhHHHHHHHHHHHHHhhhhhh
Q 030438 41 GIIGIYAAFKYHN--ESAIVNLYSLHSWLGIAVISLYGIQWLYGFV 84 (177)
Q Consensus 41 ~~iGl~av~~~~~--~~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~ 84 (177)
+.+|+....-+.- ..|+.+...+=+..|++.+.....|.+.-++
T Consensus 10 AgVGIlvavl~~vLk~sGkee~A~~~tLaG~iiVL~~Vi~~i~~LF 55 (64)
T TIGR02848 10 AGVGILVAVIHTILKQSGKEEQAQMVTLAGIVVVLFMVITLINDLF 55 (64)
T ss_pred hhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555544443 3477888888999999988888888876654
Done!