Query 030438
Match_columns 177
No_of_seqs 135 out of 400
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 22:21:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030438.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030438hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gd3_A NI/Fe-hydrogenase 1 B-t 92.1 1.3 4.3E-05 35.4 9.9 63 21-84 14-83 (235)
2 1kqf_C FDH-N gamma, formate de 90.0 2.2 7.6E-05 33.3 9.4 96 26-123 14-133 (217)
3 1kqf_C FDH-N gamma, formate de 70.6 31 0.0011 26.5 9.2 46 71-117 21-71 (217)
4 1rkl_A Dolichyl-diphosphooligo 65.9 9.1 0.00031 22.4 3.7 28 141-170 8-35 (36)
5 2lat_A Dolichyl-diphosphooligo 39.1 45 0.0016 19.4 3.7 25 141-167 8-32 (37)
6 4gd3_A NI/Fe-hydrogenase 1 B-t 31.3 1.2E+02 0.004 23.6 6.3 53 71-123 25-83 (235)
7 4ain_A Glycine betaine transpo 12.4 4.1E+02 0.014 24.0 6.3 29 26-55 144-172 (539)
8 2jwa_A Receptor tyrosine-prote 11.5 2.4E+02 0.0083 16.8 3.1 27 141-167 13-39 (44)
9 1q16_C Cytochrome B-NR, respir 11.3 4.5E+02 0.016 20.0 5.6 11 101-111 185-195 (225)
10 3ldc_A Calcium-gated potassium 9.4 3.9E+02 0.013 17.0 6.3 24 133-156 44-67 (82)
No 1
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=92.06 E-value=1.3 Score=35.40 Aligned_cols=63 Identities=14% Similarity=0.209 Sum_probs=43.8
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCC--C-----ccchhhHHHHHHHHHHHHHhhhhhh
Q 030438 21 LRKEVKKVIHLVLHAIALILGIIGIYAAFKYHNESAIV--N-----LYSLHSWLGIAVISLYGIQWLYGFV 84 (177)
Q Consensus 21 ~~~~~~k~iH~~l~~~a~~~~~iGl~av~~~~~~~~~~--h-----f~SlHswlGl~t~~L~~lQ~~~G~~ 84 (177)
.+...+ ..||.+=.+-+.+.+.|+..........+.+ + ...+|-++|++.+.+..+-.+.++.
T Consensus 14 y~~~~R-~~HW~~a~~ii~l~~tG~~~~~~~~~~~g~~~~~~~~~~~~~~H~~~G~~~~~l~~~Rl~w~~~ 83 (235)
T 4gd3_A 14 FEAPVR-IWHWLTVLCMAVLMVTGYFIGKPLPSVSGEATYLFYMGYIRLIHFSAGMVFTVVLLMRIYWAFV 83 (235)
T ss_dssp CCCCTT-HHHHHHHHHHHHHHHHHHHHHSCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cChHHH-HHHHHHHHHHHHHHHHHHHhcCccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 7999888877788888887754322111211 1 2358999999999999998888885
No 2
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr B556(FDN) subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Probab=90.02 E-value=2.2 Score=33.28 Aligned_cols=96 Identities=14% Similarity=0.113 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcc----cc-CCCCccchhhHHHHHHHHHHHHHhhhhhhhheecCCCCC------
Q 030438 26 KKVIHLVLHAIALILGIIGIYAAFKYHN----ES-AIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTG------ 94 (177)
Q Consensus 26 ~k~iH~~l~~~a~~~~~iGl~av~~~~~----~~-~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~------ 94 (177)
.+..||.+=..-+++.+.|+...+.... .. +......+|-++|.+.+.++..- +........|. +.+
T Consensus 14 ~R~~HW~~a~~ii~l~~tG~~i~~p~~~~l~~~~g~~~~~~~~H~~~G~~~~~l~~~r-~~r~~r~~~p~-~~~~~~~~~ 91 (217)
T 1kqf_C 14 DRACHWTVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFM-FVRFVHHNIPD-KKDIPWLLN 91 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTCGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHH-HHHHGGGSCCC-GGGHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHchhHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCC-hhHHHHHHH
Confidence 3589999988888888889876532110 01 11236789999999988877653 22222333443 221
Q ss_pred -------------cccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 030438 95 -------------LRSESLPWHVLFGLFVYILAVANAAIGFL 123 (177)
Q Consensus 95 -------------~r~~~~p~H~~~G~~~~~l~~~t~~lGl~ 123 (177)
.....-|..+..=.+++++.++..++|+.
T Consensus 92 ~~~yl~~~~~~~p~~~~~n~~~~~~~~~l~~l~~~~~~TG~~ 133 (217)
T 1kqf_C 92 IVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVI 133 (217)
T ss_dssp HHHHHTTCHHHHCCCCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11224456666667778888888999985
No 3
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr B556(FDN) subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Probab=70.57 E-value=31 Score=26.49 Aligned_cols=46 Identities=20% Similarity=0.338 Sum_probs=28.8
Q ss_pred HHHHHHHHhhhhhhhheecCCC-----CCcccchhhHHHHHHHHHHHHHHHH
Q 030438 71 VISLYGIQWLYGFVIFFYPGGS-----TGLRSESLPWHVLFGLFVYILAVAN 117 (177)
Q Consensus 71 t~~L~~lQ~~~G~~~fl~p~~~-----~~~r~~~~p~H~~~G~~~~~l~~~t 117 (177)
..+++..+++.|+... .|... ...+...+.+|..+|.+.+++.+.=
T Consensus 21 ~a~~ii~l~~tG~~i~-~p~~~~l~~~~g~~~~~~~~H~~~G~~~~~l~~~r 71 (217)
T 1kqf_C 21 VVICFFLVALSGISFF-FPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFM 71 (217)
T ss_dssp HHHHHHHHHHHHHHHH-CTTCGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-chhHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 3345555667787554 55421 1223456789999999998776653
No 4
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=65.90 E-value=9.1 Score=22.35 Aligned_cols=28 Identities=11% Similarity=0.160 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhccccCCCCC
Q 030438 141 ALLVNFTAVITILYGAFVIFSVASQGPAED 170 (177)
Q Consensus 141 ~~~~n~~gl~~~~~~~~v~~~~~~~~~~~~ 170 (177)
..++|++|+. ++..+|+|..+....++|
T Consensus 8 ~~lan~lG~~--~~~LIvlYH~v~~n~~~k 35 (36)
T 1rkl_A 8 NSLAITFGIV--MMTLIVIYHAVDSTMSPK 35 (36)
T ss_dssp GHHHHHHHHH--HHHHHHHHHHHTSCCCCC
T ss_pred HHHHHHHHHH--HHHHHHHHHHHhccccCC
Confidence 5689999998 566677777766655443
No 5
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=39.12 E-value=45 Score=19.42 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhccccCC
Q 030438 141 ALLVNFTAVITILYGAFVIFSVASQGP 167 (177)
Q Consensus 141 ~~~~n~~gl~~~~~~~~v~~~~~~~~~ 167 (177)
..++|++|+.. +..+|+|..+...+
T Consensus 8 ~~lan~lG~~~--~~LIVlYH~v~~n~ 32 (37)
T 2lat_A 8 AIFANMLGVSL--FLLVVLYHYVAVNN 32 (37)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH--HHHHHHHHHHhcCc
Confidence 56899999984 45556665544433
No 6
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=31.26 E-value=1.2e+02 Score=23.64 Aligned_cols=53 Identities=9% Similarity=0.032 Sum_probs=33.9
Q ss_pred HHHHHHHHhhhhhhhheecCC--CCCccc----chhhHHHHHHHHHHHHHHHHHHHHHH
Q 030438 71 VISLYGIQWLYGFVIFFYPGG--STGLRS----ESLPWHVLFGLFVYILAVANAAIGFL 123 (177)
Q Consensus 71 t~~L~~lQ~~~G~~~fl~p~~--~~~~r~----~~~p~H~~~G~~~~~l~~~t~~lGl~ 123 (177)
+.+++..+++.|+....-+.. ....+. ..+.+|..+|.+.+++.+.=+..++.
T Consensus 25 ~a~~ii~l~~tG~~~~~~~~~~~g~~~~~~~~~~~~~~H~~~G~~~~~l~~~Rl~w~~~ 83 (235)
T 4gd3_A 25 TVLCMAVLMVTGYFIGKPLPSVSGEATYLFYMGYIRLIHFSAGMVFTVVLLMRIYWAFV 83 (235)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666667777754422210 111222 23458999999999999998888875
No 7
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=12.36 E-value=4.1e+02 Score=23.98 Aligned_cols=29 Identities=24% Similarity=0.455 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 030438 26 KKVIHLVLHAIALILGIIGIYAAFKYHNES 55 (177)
Q Consensus 26 ~k~iH~~l~~~a~~~~~iGl~av~~~~~~~ 55 (177)
....||.+|.=|+- +++|+..+|-.++++
T Consensus 144 ~t~fHWG~~~WAiY-av~glalaY~~yrk~ 172 (539)
T 4ain_A 144 TTMFHWTLHPWAIY-AIVGLAIAYSTFRVG 172 (539)
T ss_dssp HHHHHHSHHHHHHH-HHHHHHHHCCCCCTC
T ss_pred HHHHhcChHHHHHH-HHHHHHHHHHHhcCC
Confidence 35789999998875 688999988777543
No 8
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=11.55 E-value=2.4e+02 Score=16.80 Aligned_cols=27 Identities=4% Similarity=0.118 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhccccCC
Q 030438 141 ALLVNFTAVITILYGAFVIFSVASQGP 167 (177)
Q Consensus 141 ~~~~n~~gl~~~~~~~~v~~~~~~~~~ 167 (177)
.+.+-+.|+++++..++++....+.|.
T Consensus 13 ~Ia~~vVGvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 13 SIISAVVGILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHhheehhh
Confidence 344556776666555555555555444
No 9
>1q16_C Cytochrome B-NR, respiratory nitrate reductase 1 gamma chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: f.21.3.1 PDB: 1siw_C* 1y4z_C* 3ir5_C* 3ir6_C* 3ir7_C* 1y5l_C* 1y5i_C* 1y5n_C* 3egw_C*
Probab=11.26 E-value=4.5e+02 Score=19.99 Aligned_cols=11 Identities=18% Similarity=0.730 Sum_probs=5.6
Q ss_pred hHHHHHHHHHH
Q 030438 101 PWHVLFGLFVY 111 (177)
Q Consensus 101 p~H~~~G~~~~ 111 (177)
..|...+...+
T Consensus 185 ~~Hi~~~~~~l 195 (225)
T 1q16_C 185 RLHLVLGMTLF 195 (225)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45655555443
No 10
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=9.44 E-value=3.9e+02 Score=16.99 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=12.2
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHH
Q 030438 133 GLAKYGSEALLVNFTAVITILYGA 156 (177)
Q Consensus 133 ~~~~~~~e~~~~n~~gl~~~~~~~ 156 (177)
+|.|..|....+.....+..++|.
T Consensus 44 GyGdi~P~t~~~r~~~~~~~~~G~ 67 (82)
T 3ldc_A 44 GYGDYSPHTPLGMYFTCTLIVLGI 67 (82)
T ss_dssp CCCSSCCCSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccHHHHHHHHHHHHH
Confidence 566665544444444444444443
Done!