Query 030439
Match_columns 177
No_of_seqs 107 out of 135
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 13:45:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030439.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030439hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04535 DUF588: Domain of unk 99.9 1.9E-27 4.1E-32 187.6 11.0 128 34-162 2-149 (149)
2 TIGR01569 A_tha_TIGR01569 plan 99.8 7.9E-21 1.7E-25 152.5 9.1 131 40-173 1-153 (154)
3 PF01284 MARVEL: Membrane-asso 98.8 5.1E-08 1.1E-12 73.6 10.8 128 38-169 5-144 (144)
4 KOG4016 Synaptic vesicle prote 71.0 26 0.00057 30.6 7.8 121 39-169 25-165 (233)
5 PF12304 BCLP: Beta-casein lik 55.0 91 0.002 26.6 8.0 97 75-174 43-162 (188)
6 PF06016 Reovirus_L2: Reovirus 28.9 5.1 0.00011 42.3 -4.0 33 112-144 884-918 (1289)
7 KOG4788 Members of chemokine-l 22.1 4.3E+02 0.0093 21.4 12.1 32 41-74 40-71 (172)
8 PF15555 DUF4658: Domain of un 16.4 4E+02 0.0086 21.4 5.2 30 31-60 63-93 (129)
9 COG0833 LysP Amino acid transp 15.3 5.5E+02 0.012 25.3 6.8 56 37-94 370-425 (541)
10 PF14898 DUF4491: Domain of un 14.3 3.6E+02 0.0078 20.6 4.3 37 68-104 56-92 (94)
No 1
>PF04535 DUF588: Domain of unknown function (DUF588); InterPro: IPR006702 This family of plant proteins contains a domain that may have a catalytic activity. It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices.
Probab=99.95 E-value=1.9e-27 Score=187.58 Aligned_cols=128 Identities=30% Similarity=0.476 Sum_probs=119.0
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHhCCC------------CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 030439 34 PATPGGLALRVSQFIFAVAALCVMATTSD------------FPSVTAFCFLVAAAGLQSLWSLSLAIVDIYALSVMRSLQ 101 (177)
Q Consensus 34 pGt~~~L~LR~~q~~fa~~Sl~vM~s~~~------------F~s~taF~YLva~~~Lq~lWS~~la~~diyall~k~~l~ 101 (177)
+++..+++||+.|++++++|+++|++++| |+++++|+|+|++|++++.||+.+++.++|.+.+|+ .+
T Consensus 2 ~~~~~~l~LR~~~~~~sl~a~~vm~t~~qt~~~~~~~~~~~f~~~~af~ylv~a~~i~~~Ysl~~~~~~~~~~~~~~-~~ 80 (149)
T PF04535_consen 2 SLRIASLVLRLLAFVLSLAALAVMATNKQTVSVFSIQFTAKFSDYPAFRYLVAANVIACVYSLLQLVLSIYSLSRGK-LR 80 (149)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHhcCCcceeeccccceeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-Cc
Confidence 56778999999999999999999999988 999999999999999999999999999999999998 77
Q ss_pred ccceEEEEEEchhHHHHHHHhhhhhhhhhHHhhhccC------CCCCccc--chHHHHHHHHHHHHHHH
Q 030439 102 NSRIVNLFTVGDGITSTLTFAAACASAGITVLIDNDL------QSCSQNH--CIQFETATAMAFISWFT 162 (177)
Q Consensus 102 ~~~~~~lf~vGD~V~a~L~~aAAsAsAgitvL~~~d~------~~C~~~~--C~~~~~SiamAFlsw~~ 162 (177)
++...++++++||+++||+++|++|+++++.+.++|. +.|.... |+|+++|++++|++|++
T Consensus 81 ~~~~~~~~f~~Dqv~~~ll~sa~~Aa~~~~~~~~~g~~~~~W~~vC~~~~~FC~~~~~sv~lsf~a~~~ 149 (149)
T PF04535_consen 81 SKLLAWFLFILDQVLAYLLFSAASAAAAVAYLGKKGNSHVQWSKVCSQFGKFCNRAAASVALSFLAFVA 149 (149)
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhccchhhHHHHHHHHHHHHHHHHHC
Confidence 7778887899999999999999999999999888884 3699775 99999999999999974
No 2
>TIGR01569 A_tha_TIGR01569 plant integral membrane protein TIGR01569. This model describes a region of ~160 residues found exclusively in plant proteins, generally as the near complete length of the protein. At least 24 different members are found in Arabidopsis thaliana. Members have four predicted transmembrane regions, the last of which is preceded by an invariant CXXXXX[FY]C motif. The family is not functionally characterized.
Probab=99.84 E-value=7.9e-21 Score=152.48 Aligned_cols=131 Identities=23% Similarity=0.272 Sum_probs=116.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCC--------------CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccce
Q 030439 40 LALRVSQFIFAVAALCVMATTSD--------------FPSVTAFCFLVAAAGLQSLWSLSLAIVDIYALSVMRSLQNSRI 105 (177)
Q Consensus 40 L~LR~~q~~fa~~Sl~vM~s~~~--------------F~s~taF~YLva~~~Lq~lWS~~la~~diyall~k~~l~~~~~ 105 (177)
|.||+..+.++++|+++|++|+| |+++.+|+|+|.++++.+.||+.++...+|.+.+++... .
T Consensus 1 l~LR~~~~~~sl~A~vvm~t~~qt~~~~~~~~~~~a~f~d~~af~y~v~anai~~~Ysll~l~~~~~~~~~~~~~~---~ 77 (154)
T TIGR01569 1 LILRVLAFSATLAAAIVMGTNRETKVVFVQLITFKAKFSDLPAFVYFVVANAIACGYSLLSLVVSIFGLLKRRVFF---K 77 (154)
T ss_pred CcHHHHHHHHHHHHHHHhhcccceeeeecccceeeeeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh---H
Confidence 57999999999999999999844 889999999999999999999999999999988777652 2
Q ss_pred EEEEEEchhHHHHHHHhhhhhhhhhHHhhhccCC------CCCcc--cchHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 030439 106 VNLFTVGDGITSTLTFAAACASAGITVLIDNDLQ------SCSQN--HCIQFETATAMAFISWFTALPSFLLNFWS 173 (177)
Q Consensus 106 ~~lf~vGD~V~a~L~~aAAsAsAgitvL~~~d~~------~C~~~--~C~~~~~SiamAFlsw~~~a~S~l~~~w~ 173 (177)
.++.++|||+++||+++|++|+++++++.++|.+ .|... +|+|...|++++|+++++++.+++++-..
T Consensus 78 ~~~~f~~D~v~~~Ll~sa~sAA~av~~l~~~G~~~~~W~~iC~~~~~FC~~~~~sl~~s~~a~v~~~llsv~Sa~~ 153 (154)
T TIGR01569 78 LIALFFLDLVMLALLSSGTSAAAAVAYVGKLGNKEAGWLKICGVFGKFCDRIAGSLALSLFAVILLVLLSILSAIS 153 (154)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4557999999999999999999999999988854 48764 49999999999999999999999998654
No 3
>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain. The MARVEL domain is a module with a four transmembrane-helix architecture that has been identified in proteins of the myelin and lymphocyte (MAL), physins, gyrins and occludin families. All described MARVEL domain-containing proteins are consistent with the M-shaped topology: four transmembrane-helix region architecture with cytoplasmic N- and C-terminal regions. Their function could be related to cholesterol-rich membrane apposition events in a variety of cellular processes, such as biogenesis of vesicular transport carriers or tight junction regulation [].
Probab=98.83 E-value=5.1e-08 Score=73.62 Aligned_cols=128 Identities=22% Similarity=0.230 Sum_probs=95.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHhCC------CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccceEEE-EE
Q 030439 38 GGLALRVSQFIFAVAALCVMATTS------DFPSVTAFCFLVAAAGLQSLWSLSLAIVDIYALSVMRSLQNSRIVNL-FT 110 (177)
Q Consensus 38 ~~L~LR~~q~~fa~~Sl~vM~s~~------~F~s~taF~YLva~~~Lq~lWS~~la~~diyall~k~~l~~~~~~~l-f~ 110 (177)
-...+|+.|++++++.+..++... .....++.-|.+++.++..++++...+.+.+. .|+ .. +....+ .+
T Consensus 5 ~~~ilR~lq~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~--~~~-~~-~~~~~~~~~ 80 (144)
T PF01284_consen 5 PSGILRILQLVFALIIFGLVASSIATGSQIYGGSPSACGFALFVAVLSFLYTLIFLLLYLFS--LKY-RP-RIPWPLVEF 80 (144)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH--Hhc-cc-ccccchhHH
Confidence 457899999999999999998775 35667788999999999999999999999988 221 12 223333 36
Q ss_pred EchhHHHHHHHhhhhhhhhhHHhhhc-----cCCCCCcccchHHHHHHHHHHHHHHHHHhHHHH
Q 030439 111 VGDGITSTLTFAAACASAGITVLIDN-----DLQSCSQNHCIQFETATAMAFISWFTALPSFLL 169 (177)
Q Consensus 111 vGD~V~a~L~~aAAsAsAgitvL~~~-----d~~~C~~~~C~~~~~SiamAFlsw~~~a~S~l~ 169 (177)
+.|.+.+.+-+++++..+--..-.+. +...+....|+..+++++++|++|++-..|.++
T Consensus 81 ~~~~v~~il~l~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Aa~~f~~~~~~l~~~s~~l 144 (144)
T PF01284_consen 81 IFDAVFAILWLAAFIALAAYLSDHSCSNTGNDYSYSGCSRCGAWKAAAAFGFLNWLLFIVSAVL 144 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccccCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHC
Confidence 67999999999988877644322111 112222334999999999999999999888753
No 4
>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.98 E-value=26 Score=30.58 Aligned_cols=121 Identities=21% Similarity=0.219 Sum_probs=71.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHhCCC--------------CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Q 030439 39 GLALRVSQFIFAVAALCVMATTSD--------------FPSVTAFCFLVAAAGLQSLWSLSLAIVDIYALSVMRSLQNSR 104 (177)
Q Consensus 39 ~L~LR~~q~~fa~~Sl~vM~s~~~--------------F~s~taF~YLva~~~Lq~lWS~~la~~diyall~k~~l~~~~ 104 (177)
..++|+..++|+++-+.-.. +.+ ..+-.+=.|=+++-.+..+=++..+++|+|-=.....-.+++
T Consensus 25 ~ti~R~~~~lFsliVf~si~-~eGy~n~~~~~~~~Ciynrn~~ACsyg~avG~~Afla~~~flvlD~~f~qISsv~~Rkr 103 (233)
T KOG4016|consen 25 QTILRVVSWLFSLIVFGSIV-NEGYLNSASSGEEFCIYNRNSNACSYGVAVGVLAFLACLAFLVLDVYFPQISSVKDRKR 103 (233)
T ss_pred hhHHHHHHHHHHHhheeeec-cccccCcccCCceEEEECCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhHH
Confidence 46899999999988666443 333 334456679999999999999999999999433322222222
Q ss_pred eEEEEEEchhHHHHH----HHhhhhhhhhhHHhhhccCCCCCccc--chHHHHHHHHHHHHHHHHHhHHHH
Q 030439 105 IVNLFTVGDGITSTL----TFAAACASAGITVLIDNDLQSCSQNH--CIQFETATAMAFISWFTALPSFLL 169 (177)
Q Consensus 105 ~~~lf~vGD~V~a~L----~~aAAsAsAgitvL~~~d~~~C~~~~--C~~~~~SiamAFlsw~~~a~S~l~ 169 (177)
. +.+|.+++-| -|-+=|==+ + ....+.=++|. -+..+++|+++|+|.+.-..-+++
T Consensus 104 a----Vl~Dl~~SalwtflwfvGFc~l~---n--qwqvs~p~~~~~~a~saraaIafsffSilsW~~~A~l 165 (233)
T KOG4016|consen 104 A----VLADLGVSALWAFLWFVGFCFLA---N--QWQVSKPKENPLGAGSARAAIAFSFFSILSWGGQAVL 165 (233)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHH---H--HhhccCCCCCCcCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2345544322 222222111 0 11112122343 779999999998876655544444
No 5
>PF12304 BCLP: Beta-casein like protein; InterPro: IPR020977 This entry represents eukaryotic proteins that are typically between 216 to 240 amino acids in length which have two conserved sequence motifs: VLR and TRIY. Beta-casein-like protein is associated with cell morphology and a regulation of growth pattern of tumours. It is found in adenocarcinomas of uterine cervical tissues[].
Probab=55.05 E-value=91 Score=26.60 Aligned_cols=97 Identities=19% Similarity=0.186 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCccceEEEEEEchhHHHHHHHhhhhhh-----hhhHHhhhcc------------
Q 030439 75 AAGLQSLWSLSLAIVDIYALSVMRSLQNSRIVNLFTVGDGITSTLTFAAACAS-----AGITVLIDND------------ 137 (177)
Q Consensus 75 ~~~Lq~lWS~~la~~diyall~k~~l~~~~~~~lf~vGD~V~a~L~~aAAsAs-----AgitvL~~~d------------ 137 (177)
+|++..-=.+.-....|-+++..|.+++..+.+-.++.- +.-.++++||+- ..+|+.. +|
T Consensus 43 sNiisv~Sgll~I~~GI~AIvlSrnl~~~~L~W~Ll~~S--~ln~LlSaAc~vGL~~ai~~Tv~~-~Gr~Ll~~C~f~~~ 119 (188)
T PF12304_consen 43 SNIISVTSGLLSIICGIVAIVLSRNLRNRPLHWTLLVVS--LLNALLSAACAVGLLLAISLTVAN-QGRNLLAGCNFTNL 119 (188)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhhccCCCCcchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHh-CchhHhhcCCCCCh
Confidence 454544444444566677888888888877544222222 223456777763 2333322 11
Q ss_pred ------CCCCCcccchHHHHHHHHHHHHHHHHHhHHHHHhhhh
Q 030439 138 ------LQSCSQNHCIQFETATAMAFISWFTALPSFLLNFWSL 174 (177)
Q Consensus 138 ------~~~C~~~~C~~~~~SiamAFlsw~~~a~S~l~~~w~l 174 (177)
.+.|+.++.+=|+++.++=+.+-++.+.=+.+++|-.
T Consensus 120 ~~~~~it~dCPFDpTRIY~TtL~LW~ps~ll~~~EavfS~rCf 162 (188)
T PF12304_consen 120 NALSSITNDCPFDPTRIYDTTLALWIPSILLSAVEAVFSVRCF 162 (188)
T ss_pred hhccCCCCCCCCCcchHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1259999999999999999999999999999998854
No 6
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=28.87 E-value=5.1 Score=42.34 Aligned_cols=33 Identities=36% Similarity=0.480 Sum_probs=23.0
Q ss_pred chhHHHHHHHhhhhhhhhhHHh--hhccCCCCCcc
Q 030439 112 GDGITSTLTFAAACASAGITVL--IDNDLQSCSQN 144 (177)
Q Consensus 112 GD~V~a~L~~aAAsAsAgitvL--~~~d~~~C~~~ 144 (177)
+|-++++|+|.||||+++++.+ +++=.+.|.++
T Consensus 884 ~D~vtailSLGAAaA~a~~tl~~~l~~~l~~~~~~ 918 (1289)
T PF06016_consen 884 FDAVTAILSLGAAAASANVTLDAGLQQFLSQCVQA 918 (1289)
T ss_dssp -SEEEECTCHHHHHHHCT--HHHHHHHHHHHHHCT
T ss_pred CCEEEEEeeehhhhhcCCCcHHHHHHHHHHHHHhC
Confidence 4889999999999999999943 54445556543
No 7
>KOG4788 consensus Members of chemokine-like factor super family and related proteins [Defense mechanisms]
Probab=22.08 E-value=4.3e+02 Score=21.40 Aligned_cols=32 Identities=13% Similarity=0.353 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCccchhHHHHH
Q 030439 41 ALRVSQFIFAVAALCVMATTSDFPSVTAFCFLVA 74 (177)
Q Consensus 41 ~LR~~q~~fa~~Sl~vM~s~~~F~s~taF~YLva 74 (177)
.|++.|.+.+++.++...+..-+. +++-+...
T Consensus 40 ~Lki~e~~l~li~fi~i~~~~~~~--~~~~~~~~ 71 (172)
T KOG4788|consen 40 LLKILEIVLGLIIFICIASSLAYH--LALAFFEF 71 (172)
T ss_pred HHHHHHHHHHHHHheeeecCcccC--CcceeeeH
Confidence 689999999999999877665555 44433333
No 8
>PF15555 DUF4658: Domain of unknown function (DUF4658)
Probab=16.44 E-value=4e+02 Score=21.44 Aligned_cols=30 Identities=30% Similarity=0.391 Sum_probs=22.7
Q ss_pred cCCCCC-cchhhHHHHHHHHHHHHHHHHHhC
Q 030439 31 QGMPAT-PGGLALRVSQFIFAVAALCVMATT 60 (177)
Q Consensus 31 ~G~pGt-~~~L~LR~~q~~fa~~Sl~vM~s~ 60 (177)
||.|+. .+||.||+.-++.=.+++.+-+.-
T Consensus 63 p~rP~p~g~sLlL~L~~CiLL~vaLglyCgr 93 (129)
T PF15555_consen 63 PGRPRPHGGSLLLRLCVCILLGVALGLYCGR 93 (129)
T ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHHHccC
Confidence 555443 389999999999988888876554
No 9
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=15.25 E-value=5.5e+02 Score=25.25 Aligned_cols=56 Identities=14% Similarity=0.228 Sum_probs=36.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030439 37 PGGLALRVSQFIFAVAALCVMATTSDFPSVTAFCFLVAAAGLQSLWSLSLAIVDIYAL 94 (177)
Q Consensus 37 ~~~L~LR~~q~~fa~~Sl~vM~s~~~F~s~taF~YLva~~~Lq~lWS~~la~~diyal 94 (177)
+.|..++..-...+...+++|.+.. .+-+.|-||+++.++...-.-.-.++.=|+.
T Consensus 370 r~GvP~~al~vt~~fg~lafl~~~~--~~~~vf~wL~~isg~s~~i~W~~I~~shirF 425 (541)
T COG0833 370 RRGVPLVALLVTLLFGLLAFLNSSF--KETTVFNWLLNISGLSGFIAWGSICLSHIRF 425 (541)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666555 6777999999999998774444444444443
No 10
>PF14898 DUF4491: Domain of unknown function (DUF4491)
Probab=14.30 E-value=3.6e+02 Score=20.61 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Q 030439 68 AFCFLVAAAGLQSLWSLSLAIVDIYALSVMRSLQNSR 104 (177)
Q Consensus 68 aF~YLva~~~Lq~lWS~~la~~diyall~k~~l~~~~ 104 (177)
-...++++.|..++||.....-.-=++..+.=.+||+
T Consensus 56 ~~S~llgv~g~s~lWsI~ElfeQ~kRV~kGWFP~NPk 92 (94)
T PF14898_consen 56 IWSALLGVLGFSCLWSIGELFEQEKRVEKGWFPKNPK 92 (94)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCCC
Confidence 4577899999999999998877766666665556653
Done!