Query 030439
Match_columns 177
No_of_seqs 107 out of 135
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 22:22:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030439.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030439hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2il1_A RAB12; G-protein, GDP, 35.5 14 0.00048 27.3 1.4 46 1-46 1-48 (192)
2 1g03_A HTLV-I capsid protein; 29.0 8.6 0.00029 29.6 -0.7 21 6-31 1-21 (134)
3 3iyl_W VP1; non-enveloped viru 25.9 3.8 0.00013 41.8 -4.1 33 112-144 890-924 (1299)
4 1ej6_A Lambda2; icosahedral, n 18.2 12 0.00042 38.1 -2.2 22 112-133 883-904 (1289)
5 4h31_A Otcase, ornithine carba 12.4 1.6E+02 0.0055 25.5 3.5 30 85-114 161-190 (358)
6 3c2i_A Methyl-CPG-binding prot 10.2 1.7E+02 0.0057 21.3 2.4 18 19-36 22-39 (97)
7 4a8t_A Putrescine carbamoyltra 8.9 2.2E+02 0.0076 24.6 3.2 27 85-114 154-184 (339)
8 4a8p_A Putrescine carbamoyltra 8.5 2.3E+02 0.0079 24.7 3.1 27 85-114 132-162 (355)
9 3l1l_A Arginine/agmatine antip 7.7 6.6E+02 0.023 20.5 5.6 34 66-99 347-380 (445)
10 1gwn_A RHO-related GTP-binding 7.1 96 0.0033 23.2 0.0 45 1-45 1-49 (205)
No 1
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=35.51 E-value=14 Score=27.27 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=14.6
Q ss_pred CCcCCCccccCCCCCCCCCCCCCcceec-cCcCCCCC-cchhhHHHHH
Q 030439 1 MNVSHASVHPVEDPPTTEGGNAPRVRMK-DIQGMPAT-PGGLALRVSQ 46 (177)
Q Consensus 1 ~~~s~~~~~~~~~~p~~~~~~~~~~~m~-~~~G~pGt-~~~L~LR~~q 46 (177)
|+-||-+-||+.-+|+.+.++|+.-++| -+.|.+|. +.+|.-|+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~p~~~~~~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 1 MGSSHHHHHHSSGLVPRGSPRPADFKLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp ---------------------CCSEEEEEEEECSTTSSHHHHHHHHCC
T ss_pred CCccccccccccccCCCCCCcccCCceEEEEECCCCCCHHHHHHHHhc
Confidence 6789999999988888765444444454 34588864 4567777643
No 2
>1g03_A HTLV-I capsid protein; beta hairpin loop, helix core, viral protein; NMR {Human t-lymphotropic virus 1} SCOP: a.73.1.1
Probab=29.02 E-value=8.6 Score=29.58 Aligned_cols=21 Identities=38% Similarity=0.661 Sum_probs=15.6
Q ss_pred CccccCCCCCCCCCCCCCcceeccCc
Q 030439 6 ASVHPVEDPPTTEGGNAPRVRMKDIQ 31 (177)
Q Consensus 6 ~~~~~~~~~p~~~~~~~~~~~m~~~~ 31 (177)
|.+||-+.|+.. ..|.|||++
T Consensus 1 Pi~h~~G~~~~H-----R~W~mkdLQ 21 (134)
T 1g03_A 1 PVMHPHGAPPNH-----RPWQMKDLQ 21 (134)
T ss_dssp CEECCSSSCCEE-----CCSSTHHHH
T ss_pred CccCCCCCCccc-----cchHHHHHH
Confidence 678888777543 368999886
No 3
>3iyl_W VP1; non-enveloped virus, membrane penetration protein, autocleav myristol group, icosahedral virus; HET: MYR; 3.30A {Grass carp reovirus} PDB: 3k1q_A
Probab=25.86 E-value=3.8 Score=41.84 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=24.8
Q ss_pred chhHHHHHHHhhhhhhhhhHHh--hhccCCCCCcc
Q 030439 112 GDGITSTLTFAAACASAGITVL--IDNDLQSCSQN 144 (177)
Q Consensus 112 GD~V~a~L~~aAAsAsAgitvL--~~~d~~~C~~~ 144 (177)
+|-|+++|+|.||||+++++.+ +++=++.|.++
T Consensus 890 ~d~vtailSLGAA~a~a~~tl~~~l~~~l~~~~~~ 924 (1299)
T 3iyl_W 890 CDSATAIFTIGAAAAAAGTDLIAFVQQLIPRIVAA 924 (1299)
T ss_dssp CSEEEETTTHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred CCEEEEeeechhhhhhCCCcHHHHHHHHHHHHHhc
Confidence 4788999999999999999843 54445555543
No 4
>1ej6_A Lambda2; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_U
Probab=18.20 E-value=12 Score=38.12 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=19.6
Q ss_pred chhHHHHHHHhhhhhhhhhHHh
Q 030439 112 GDGITSTLTFAAACASAGITVL 133 (177)
Q Consensus 112 GD~V~a~L~~aAAsAsAgitvL 133 (177)
+|-|+++++|.||||++++|..
T Consensus 883 ~D~vt~i~SLGAA~A~a~~tl~ 904 (1289)
T 1ej6_A 883 GDIVTCMLSLGAAAAGKSMTFD 904 (1289)
T ss_dssp CSEEEECSCHHHHHHHHTCCHH
T ss_pred CcEEEEEeechhhhhccCCcHH
Confidence 5889999999999999998843
No 5
>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*
Probab=12.40 E-value=1.6e+02 Score=25.50 Aligned_cols=30 Identities=10% Similarity=0.128 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhhccCCccceEEEEEEchh
Q 030439 85 SLAIVDIYALSVMRSLQNSRIVNLFTVGDG 114 (177)
Q Consensus 85 ~la~~diyall~k~~l~~~~~~~lf~vGD~ 114 (177)
+|+++|.|.+...+....-.-+.+-.+||.
T Consensus 161 tQaL~Dl~Ti~e~~~~~~l~gl~ia~vGD~ 190 (358)
T 4h31_A 161 TQILADFLTMLEHSQGKALADIQFAYLGDA 190 (358)
T ss_dssp HHHHHHHHHHHHTTTTCCGGGCEEEEESCT
T ss_pred hHHHHHHHHHHHHhcCCCcCceEEEecCCC
Confidence 499999999987543222122445589995
No 6
>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A
Probab=10.25 E-value=1.7e+02 Score=21.28 Aligned_cols=18 Identities=11% Similarity=-0.243 Sum_probs=13.2
Q ss_pred CCCCCcceeccCcCCCCC
Q 030439 19 GGNAPRVRMKDIQGMPAT 36 (177)
Q Consensus 19 ~~~~~~~~m~~~~G~pGt 36 (177)
...|++|+.+..+-.-|+
T Consensus 22 ~~lP~GW~re~~~R~~G~ 39 (97)
T 3c2i_A 22 PTLPEGWTRKLKQRKSGR 39 (97)
T ss_dssp TTSCTTCEEEEEECCSST
T ss_pred CCCCCCCEEEEEEecCCC
Confidence 347889999988855554
No 7
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=8.87 E-value=2.2e+02 Score=24.57 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhhc----cCCccceEEEEEEchh
Q 030439 85 SLAIVDIYALSVMR----SLQNSRIVNLFTVGDG 114 (177)
Q Consensus 85 ~la~~diyall~k~----~l~~~~~~~lf~vGD~ 114 (177)
+|+++|.|.+..++ .+...+ +-++||.
T Consensus 154 tQaLaDl~Ti~e~~~~G~~l~glk---va~vGD~ 184 (339)
T 4a8t_A 154 TQELGDLCTMVEHLPEGKKLEDCK---VVFVGDA 184 (339)
T ss_dssp HHHHHHHHHHHHTCCTTCCGGGCE---EEEESSC
T ss_pred HHHHHHHHHHHHHhhcCCCCCCCE---EEEECCC
Confidence 49999999999887 344433 3468995
No 8
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=8.50 E-value=2.3e+02 Score=24.69 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhhc----cCCccceEEEEEEchh
Q 030439 85 SLAIVDIYALSVMR----SLQNSRIVNLFTVGDG 114 (177)
Q Consensus 85 ~la~~diyall~k~----~l~~~~~~~lf~vGD~ 114 (177)
+|+++|.|.+..++ .+...+ +-++||.
T Consensus 132 tQaLaDl~TI~E~~~~G~~l~glk---va~vGD~ 162 (355)
T 4a8p_A 132 TQELGDLCTMVEHLPEGKKLEDCK---VVFVGDA 162 (355)
T ss_dssp HHHHHHHHHHHHTCCTTCCGGGCE---EEEESCC
T ss_pred HHHHHHHHHHHHHhhcCCCCCCCE---EEEECCC
Confidence 59999999999887 344433 3478995
No 9
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=7.74 E-value=6.6e+02 Score=20.52 Aligned_cols=34 Identities=9% Similarity=0.060 Sum_probs=26.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030439 66 VTAFCFLVAAAGLQSLWSLSLAIVDIYALSVMRS 99 (177)
Q Consensus 66 ~taF~YLva~~~Lq~lWS~~la~~diyall~k~~ 99 (177)
.+.|-+++....+..+.+..+..+....+.+|++
T Consensus 347 ~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~ 380 (445)
T 3l1l_A 347 TKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF 380 (445)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 3567788888888888888888888888777766
No 10
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=7.06 E-value=96 Score=23.22 Aligned_cols=45 Identities=20% Similarity=0.156 Sum_probs=10.4
Q ss_pred CCcCCCccccCCCCCCCCCCCCC--cceec-cCcCCCCCc-chhhHHHH
Q 030439 1 MNVSHASVHPVEDPPTTEGGNAP--RVRMK-DIQGMPATP-GGLALRVS 45 (177)
Q Consensus 1 ~~~s~~~~~~~~~~p~~~~~~~~--~~~m~-~~~G~pGt~-~~L~LR~~ 45 (177)
|+-+|--.||.|+||+.+..-.+ .-+.| -+.|.+|.. .+|.-|+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~m~~~~~~~~ki~vvG~~~vGKSsLi~~l~ 49 (205)
T 1gwn_A 1 MGSSHHHHHHSSGLVPRGSHMDPNQNVKCKIVVVGDSQCGKTALLHVFA 49 (205)
T ss_dssp --------------------------CEEEEEEEESTTSSHHHHHHHHH
T ss_pred CCcccccccccCCccCCCCCCCcccceeeEEEEECCCCCCHHHHHHHHh
Confidence 66788888999999886432111 11122 345777653 45555554
Done!