Query 030439
Match_columns 177
No_of_seqs 107 out of 135
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 22:22:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030439.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030439hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1g03a_ a.73.1.1 (A:) HTLV-I c 30.4 3.7 0.00027 29.7 -0.7 21 6-31 1-21 (134)
2 d2ysca1 b.72.1.1 (A:8-33) Amyl 19.3 14 0.0011 19.7 0.5 12 21-32 2-14 (26)
3 d1qpma_ a.6.1.7 (A:) mu transp 10.9 46 0.0034 21.1 1.3 16 29-44 12-27 (69)
4 d2ho2a1 b.72.1.1 (A:253-285) A 10.4 56 0.0041 18.2 1.4 13 20-32 2-15 (33)
5 d1t4ba2 d.81.1.1 (A:134-354) A 9.6 45 0.0033 25.2 1.1 25 91-115 194-218 (221)
6 d1tnsa_ a.6.1.7 (A:) mu transp 8.1 69 0.005 20.6 1.4 15 29-43 12-26 (76)
7 d1qk9a_ d.10.1.3 (A:) Methyl-C 6.7 1.5E+02 0.011 19.3 2.6 16 21-36 24-39 (92)
8 d2hjsa2 d.81.1.1 (A:130-319) U 6.3 91 0.0066 22.9 1.4 25 91-115 163-187 (190)
9 d1ig4a_ d.10.1.3 (A:) Methylat 5.7 1.3E+02 0.0094 19.0 1.7 16 21-36 11-26 (75)
10 d1mb4a2 d.81.1.1 (A:133-354) A 5.6 72 0.0052 24.1 0.4 21 95-115 199-219 (222)
No 1
>d1g03a_ a.73.1.1 (A:) HTLV-I capsid protein {Human T-cell leukemia virus type 1 [TaxId: 11908]}
Probab=30.42 E-value=3.7 Score=29.74 Aligned_cols=21 Identities=38% Similarity=0.661 Sum_probs=15.7
Q ss_pred CccccCCCCCCCCCCCCCcceeccCc
Q 030439 6 ASVHPVEDPPTTEGGNAPRVRMKDIQ 31 (177)
Q Consensus 6 ~~~~~~~~~p~~~~~~~~~~~m~~~~ 31 (177)
|+.||-+.|+.. ..|.|||++
T Consensus 1 Pi~h~~Gap~~H-----RpWqmkdLQ 21 (134)
T d1g03a_ 1 PVMHPHGAPPNH-----RPWQMKDLQ 21 (134)
T ss_dssp CEECCSSSCCEE-----CCSSTHHHH
T ss_pred CCCCCCCCCccc-----CchhHHHHH
Confidence 678888877543 368999986
No 2
>d2ysca1 b.72.1.1 (A:8-33) Amyloid beta A4 precursor protein-binding family B member 3, APBB3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.29 E-value=14 Score=19.70 Aligned_cols=12 Identities=25% Similarity=0.484 Sum_probs=8.5
Q ss_pred CCCcc-eeccCcC
Q 030439 21 NAPRV-RMKDIQG 32 (177)
Q Consensus 21 ~~~~~-~m~~~~G 32 (177)
.||+| +++|..|
T Consensus 2 LPpGW~~i~D~ag 14 (26)
T d2ysca1 2 LPPGWRKIHDAAG 14 (26)
T ss_dssp CCTTEEEEEETTE
T ss_pred cCccceeeeccCc
Confidence 58899 4667664
No 3
>d1qpma_ a.6.1.7 (A:) mu transposase, DNA-binding domain {Bacteriophage mu [TaxId: 10677]}
Probab=10.87 E-value=46 Score=21.13 Aligned_cols=16 Identities=31% Similarity=0.655 Sum_probs=12.5
Q ss_pred cCcCCCCCcchhhHHH
Q 030439 29 DIQGMPATPGGLALRV 44 (177)
Q Consensus 29 ~~~G~pGt~~~L~LR~ 44 (177)
+++|+|+|..|+-.|.
T Consensus 12 gLpglP~s~~gv~~~A 27 (69)
T d1qpma_ 12 AADGMPGSVAGVHYRA 27 (69)
T ss_dssp TSTTSCSSHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHH
Confidence 6889999988876553
No 4
>d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.42 E-value=56 Score=18.17 Aligned_cols=13 Identities=23% Similarity=0.330 Sum_probs=9.3
Q ss_pred CCCCcc-eeccCcC
Q 030439 20 GNAPRV-RMKDIQG 32 (177)
Q Consensus 20 ~~~~~~-~m~~~~G 32 (177)
..||+| +.+|..|
T Consensus 2 dLPpGW~ki~D~~G 15 (33)
T d2ho2a1 2 DLPAGWMRVQDTSG 15 (33)
T ss_dssp CSCTTEEEEECSSC
T ss_pred CCCCcceeeecCCC
Confidence 368999 5677765
No 5
>d1t4ba2 d.81.1.1 (A:134-354) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}
Probab=9.63 E-value=45 Score=25.24 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=18.2
Q ss_pred HHHHHhhccCCccceEEEEEEchhH
Q 030439 91 IYALSVMRSLQNSRIVNLFTVGDGI 115 (177)
Q Consensus 91 iyall~k~~l~~~~~~~lf~vGD~V 115 (177)
+|--+.|++...+..++++++||++
T Consensus 194 V~VGRIR~D~~~~~~l~lw~v~DNL 218 (221)
T d1t4ba2 194 TPVGRLRKLNMGPEFLSAFTVGDQL 218 (221)
T ss_dssp CCEEEEEECTTCTTEEEEEEEEETT
T ss_pred eEEecccccCCCCCEEEEEEEeccc
Confidence 3334455667777889999999986
No 6
>d1tnsa_ a.6.1.7 (A:) mu transposase, DNA-binding domain {Bacteriophage mu [TaxId: 10677]}
Probab=8.10 E-value=69 Score=20.56 Aligned_cols=15 Identities=27% Similarity=0.676 Sum_probs=11.3
Q ss_pred cCcCCCCCcchhhHH
Q 030439 29 DIQGMPATPGGLALR 43 (177)
Q Consensus 29 ~~~G~pGt~~~L~LR 43 (177)
++||+|+|..|+-.|
T Consensus 12 gLpglP~s~~gv~~~ 26 (76)
T d1tnsa_ 12 NLPGLPKTSAGVIYV 26 (76)
T ss_dssp TCSSSCSSHHHHHHH
T ss_pred cCCCCCCCHHHHHHH
Confidence 578888888886544
No 7
>d1qk9a_ d.10.1.3 (A:) Methyl-CpG-binding protein 2, MECP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.67 E-value=1.5e+02 Score=19.32 Aligned_cols=16 Identities=13% Similarity=-0.217 Sum_probs=11.8
Q ss_pred CCCcceeccCcCCCCC
Q 030439 21 NAPRVRMKDIQGMPAT 36 (177)
Q Consensus 21 ~~~~~~m~~~~G~pGt 36 (177)
.|++|+.+-.+-.-|+
T Consensus 24 Lp~GW~r~~~~R~~g~ 39 (92)
T d1qk9a_ 24 LPEGWTRKLKQRKSGR 39 (92)
T ss_dssp SSSSCEEEECCCCCSS
T ss_pred CCCCCEEEEEEecCCC
Confidence 6899998877755553
No 8
>d2hjsa2 d.81.1.1 (A:130-319) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=6.27 E-value=91 Score=22.88 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=18.5
Q ss_pred HHHHHhhccCCccceEEEEEEchhH
Q 030439 91 IYALSVMRSLQNSRIVNLFTVGDGI 115 (177)
Q Consensus 91 iyall~k~~l~~~~~~~lf~vGD~V 115 (177)
+|--+.|++..++..+.++++||++
T Consensus 163 v~VGRiR~d~~~~~~l~~w~v~Dnl 187 (190)
T d2hjsa2 163 TYVGRVRAGQADPCQVNLWIVSDNV 187 (190)
T ss_dssp EEEEEEEECSSCTTEEEEEEEECCC
T ss_pred EEEEeeEcCCCCCCEEEEEEEeCCc
Confidence 4444556677778888999999985
No 9
>d1ig4a_ d.10.1.3 (A:) Methylation-dependent transcriptional repressor MBD1/PCM1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.69 E-value=1.3e+02 Score=19.05 Aligned_cols=16 Identities=6% Similarity=0.158 Sum_probs=12.2
Q ss_pred CCCcceeccCcCCCCC
Q 030439 21 NAPRVRMKDIQGMPAT 36 (177)
Q Consensus 21 ~~~~~~m~~~~G~pGt 36 (177)
.|++|+.+..+-..|+
T Consensus 11 LP~GW~re~~~Rk~g~ 26 (75)
T d1ig4a_ 11 LGPGWKRREVFRKSGA 26 (75)
T ss_dssp TCTTCEEEEECCCSSS
T ss_pred CCCCcEEEEEEEcCCC
Confidence 6889999888865554
No 10
>d1mb4a2 d.81.1.1 (A:133-354) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}
Probab=5.59 E-value=72 Score=24.07 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=0.0
Q ss_pred HhhccCCccceEEEEEEchhH
Q 030439 95 SVMRSLQNSRIVNLFTVGDGI 115 (177)
Q Consensus 95 l~k~~l~~~~~~~lf~vGD~V 115 (177)
+.|++...+..+.++++||++
T Consensus 199 RiR~d~~~~~~l~~wvv~DNL 219 (222)
T d1mb4a2 199 RLRKMAMGDDFLNAFTVGDQL 219 (222)
T ss_dssp EEEEETTEEEEEEEEEEEETT
T ss_pred cCEecCCCCCEEEEEEEeccc
Done!