AmiGO: BLAST Results


BLAST match view associations BLAST with NRPE5 NRPE5 NRPE5 AT3G57080	protein from Arabidopsis thaliana	2.6e-47
BLAST match view associations BLAST with RPB5D RPB5D RPB5D AT2G41340	protein from Arabidopsis thaliana	1.4e-44
BLAST match view associations BLAST with RPB5E RPB5E RPB5E AT3G54490	protein from Arabidopsis thaliana	8.1e-35
BLAST match view associations BLAST with POLR2E POLR2E POLR2E DNA-directed RNA polymerases I, II, and III subunit RPABC1	protein from Pongo abelii	2.1e-23
BLAST match view associations BLAST with polr2eb polr2eb polr2eb polymerase (RNA) II (DNA directed) polypeptide E, b	gene_product from Danio rerio	4.3e-23
BLAST match view associations BLAST with POLR2E POLR2E POLR2E DNA-directed RNA polymerases I, II, and III subunit RPABC1	protein from Bos taurus	4.3e-23
BLAST match view associations BLAST with POLR2E POLR2E POLR2E Uncharacterized protein	protein from Sus scrofa	4.3e-23
BLAST match view associations BLAST with POLR2E POLR2E POLR2E DNA-directed RNA polymerases I, II, and III subunit RPABC1	protein from Homo sapiens	1.4e-22
BLAST match view associations BLAST with POLR2E POLR2E POLR2E DNA-directed RNA polymerases I, II, and III subunit RPABC1	protein from Bos taurus	3.7e-22
BLAST match view associations BLAST with RPB5C RPB5C RPB5C AT5G57980	protein from Arabidopsis thaliana	2.5e-21
BLAST match view associations BLAST with POLR2E POLR2E POLR2E Uncharacterized protein	protein from Canis lupus familiaris	1.7e-20
BLAST match view associations BLAST with POLR2E POLR2E POLR2E Uncharacterized protein	protein from Canis lupus familiaris	1.2e-19
BLAST match view associations BLAST with rpb5 rpb5 rpb5 RNA polymerase II core subunit	gene from Dictyostelium discoideum	1.9e-19
BLAST match view associations BLAST with NRPB5 NRPB5 NRPB5 AT3G22320	protein from Arabidopsis thaliana	1.6e-17
BLAST match view associations BLAST with PF13_0341 PF13_0341 PF13_0341 DNA-directed RNA polymerase 2, putative	gene from Plasmodium falciparum	7.7e-16
BLAST match view associations BLAST with PF13_0341 PF13_0341 PF13_0341 DNA-directed RNA polymerase 2, putative	protein from Plasmodium falciparum 3D7	7.7e-16
BLAST match view associations BLAST with rpb-5 rpb-5 rpb-5	gene from Caenorhabditis elegans	9.8e-16
BLAST match view associations BLAST with RPB5 RPB5 RPB5 RNA polymerase subunit ABC27	gene from Saccharomyces cerevisiae	2.0e-15
BLAST match view associations BLAST with Rpb5 Rpb5 Rpb5	protein from Drosophila melanogaster	3.3e-15
BLAST match view associations BLAST with POLR2E POLR2E POLR2E Uncharacterized protein	protein from Gallus gallus	3.3e-15
BLAST match view associations BLAST with Polr2e Polr2e Polr2e polymerase (RNA) II (DNA directed) polypeptide E	protein from Mus musculus	3.3e-15
BLAST match view associations BLAST with Polr2e Polr2e Polr2e polymerase (RNA) II (DNA directed) polypeptide E	gene from Rattus norvegicus	3.3e-15
BLAST match view associations BLAST with AT3G16680 AT3G16680 AT3G16680	protein from Arabidopsis thaliana	0.00061
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030447
        (177 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2080650 - symbol:NRPE5 species:3702 "Arabidops...   333  2.6e-47   2
TAIR|locus:2040257 - symbol:RPB5D ""RNA polymerase II fif...   318  1.4e-44   2
TAIR|locus:2096971 - symbol:RPB5E ""RNA polymerase II fif...   238  8.1e-35   2
UNIPROTKB|Q5R587 - symbol:POLR2E "DNA-directed RNA polyme...   192  2.1e-23   2
ZFIN|ZDB-GENE-040801-83 - symbol:polr2eb "polymerase (RNA...   194  4.3e-23   2
UNIPROTKB|F2Z4J4 - symbol:POLR2E "DNA-directed RNA polyme...   192  4.3e-23   2
UNIPROTKB|I3LSI7 - symbol:POLR2E "Uncharacterized protein...   192  4.3e-23   2
ASPGD|ASPL0000062840 - symbol:AN0752 species:162425 "Emer...   202  6.9e-23   2
UNIPROTKB|P19388 - symbol:POLR2E "DNA-directed RNA polyme...   192  1.4e-22   2
UNIPROTKB|Q2T9T3 - symbol:POLR2E "DNA-directed RNA polyme...   192  3.7e-22   2
TAIR|locus:2174388 - symbol:RPB5C ""RNA polymerase II fif...   190  2.5e-21   2
POMBASE|SPAC23C4.15 - symbol:rpb5 "DNA-directed RNA polym...   182  1.4e-20   2
UNIPROTKB|F6X571 - symbol:POLR2E "Uncharacterized protein...   167  1.7e-20   2
UNIPROTKB|E2R2E8 - symbol:POLR2E "Uncharacterized protein...   159  1.2e-19   2
DICTYBASE|DDB_G0291636 - symbol:rpb5 "RNA polymerase II c...   202  1.9e-19   2
TAIR|locus:2087842 - symbol:NRPB5 species:3702 "Arabidops...   214  1.6e-17   1
GENEDB_PFALCIPARUM|PF13_0341 - symbol:PF13_0341 "DNA-dire...   198  7.7e-16   1
UNIPROTKB|Q8ID59 - symbol:PF13_0341 "DNA-directed RNA pol...   198  7.7e-16   1
WB|WBGene00019246 - symbol:rpb-5 species:6239 "Caenorhabd...   197  9.8e-16   1
SGD|S000000358 - symbol:RPB5 "RNA polymerase subunit ABC2...   194  2.0e-15   1
FB|FBgn0033571 - symbol:Rpb5 "Rpb5" species:7227 "Drosoph...   192  3.3e-15   1
UNIPROTKB|F1NHV9 - symbol:POLR2E "Uncharacterized protein...   192  3.3e-15   1
MGI|MGI:1913670 - symbol:Polr2e "polymerase (RNA) II (DNA...   192  3.3e-15   1
RGD|1589817 - symbol:Polr2e "polymerase (RNA) II (DNA dir...   192  3.3e-15   1
TAIR|locus:2089338 - symbol:AT3G16680 species:3702 "Arabi...    86  0.00061   1


>TAIR|locus:2080650 [details] [associations]
            symbol:NRPE5 species:3702 "Arabidopsis thaliana"
            [GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA;ISS]
            [GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA;ISS] [GO:0000419 "DNA-directed RNA
            polymerase V complex" evidence=IPI] InterPro:IPR000783
            InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871 ProDom:PD005155
            EMBL:CP002686 GO:GO:0003677 GO:GO:0006351 EMBL:AL138655
            GO:GO:0003899 GO:GO:0000419 KO:K03013 Gene3D:3.40.1340.10
            Gene3D:3.90.940.20 InterPro:IPR014381 PIRSF:PIRSF000747
            SUPFAM:SSF53036 SUPFAM:SSF55287 HSSP:P20434 ProtClustDB:PLN03111
            EMBL:BT005410 EMBL:AK118958 IPI:IPI00518077 PIR:T47768
            RefSeq:NP_191267.1 UniGene:At.28133 ProteinModelPortal:Q9M1J2
            SMR:Q9M1J2 DIP:DIP-48680N STRING:Q9M1J2 PRIDE:Q9M1J2
            EnsemblPlants:AT3G57080.1 GeneID:824875 KEGG:ath:AT3G57080
            TAIR:At3g57080 InParanoid:Q9M1J2 OMA:TVVKVIY PhylomeDB:Q9M1J2
            ArrayExpress:Q9M1J2 Genevestigator:Q9M1J2 Uniprot:Q9M1J2
        Length = 222

 Score = 333 (122.3 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
 Identities = 62/80 (77%), Positives = 71/80 (88%)

Query:    98 RITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQV 157
             +ITDLLVNITKH LKP+HQVL D+EK  LLKK+SIEEKQLPR+ KKDAI +YYGLE+GQV
Sbjct:   143 QITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAIVRYYGLEKGQV 202

Query:   158 VKVTYSGEITESHVTYRCVW 177
             VKV Y GE+TESHV +RCVW
Sbjct:   203 VKVNYRGELTESHVAFRCVW 222

 Score = 179 (68.1 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
 Identities = 35/73 (47%), Positives = 47/73 (64%)

Query:    27 CLSGFVDNGXXXXXXXXXXXXTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR 86
             CLS +VD                L+ML+DRGY V+  +INLS+ DFR +YG+ PDVDRLR
Sbjct:    13 CLSKYVDLSSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLR 72

Query:    87 ISISHQSDPSKRI 99
             IS  H+SD +K++
Sbjct:    73 ISALHRSDSTKKV 85


>TAIR|locus:2040257 [details] [associations]
            symbol:RPB5D ""RNA polymerase II fifth largest subunit,
            D"" species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
            evidence=IEA;ISS] [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
            InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871
            ProDom:PD005155 GO:GO:0005634 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0006351 EMBL:AC005662
            GO:GO:0003899 eggNOG:COG2012 HOGENOM:HOG000205213 KO:K03013
            Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
            PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287 HSSP:P20434
            ProtClustDB:PLN03111 EMBL:AY078926 IPI:IPI00521699 PIR:E84840
            RefSeq:NP_181665.1 UniGene:At.42846 ProteinModelPortal:Q9ZVB9
            SMR:Q9ZVB9 STRING:Q9ZVB9 PaxDb:Q9ZVB9 PRIDE:Q9ZVB9
            EnsemblPlants:AT2G41340.1 GeneID:818732 KEGG:ath:AT2G41340
            TAIR:At2g41340 InParanoid:Q9ZVB9 OMA:YLARRTT PhylomeDB:Q9ZVB9
            ArrayExpress:Q9ZVB9 Genevestigator:Q9ZVB9 Uniprot:Q9ZVB9
        Length = 218

 Score = 318 (117.0 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
 Identities = 59/78 (75%), Positives = 69/78 (88%)

Query:    99 ITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVV 158
             ITDLLVN++KHVL+PKHQVL D+EKE LLKK+SIEEKQLPR+  KD I +YYGLE GQV+
Sbjct:   140 ITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKDPIVRYYGLETGQVM 199

Query:   159 KVTYSGEITESHVTYRCV 176
             KVTY  E++ESHVTYRCV
Sbjct:   200 KVTYKDELSESHVTYRCV 217

 Score = 168 (64.2 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
 Identities = 32/53 (60%), Positives = 42/53 (79%)

Query:    48 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIT 100
             T +EML+DRGY V+  +INLS+Q FRA+YG+ PDVD LRIS  H+ D SK+I+
Sbjct:    30 TTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKHRFDSSKKIS 82


>TAIR|locus:2096971 [details] [associations]
            symbol:RPB5E ""RNA polymerase II fifth largest subunit,
            E"" species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
            evidence=IEA;ISS] [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
            InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871
            ProDom:PD005155 GO:GO:0005634 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0006351 EMBL:AL138656
            GO:GO:0003899 eggNOG:COG2012 HOGENOM:HOG000205213 KO:K03013
            Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
            PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287 HSSP:P20434
            ProtClustDB:PLN03111 IPI:IPI00548152 PIR:T47608 RefSeq:NP_191013.1
            UniGene:At.1460 UniGene:At.71274 ProteinModelPortal:Q9M1H8
            SMR:Q9M1H8 STRING:Q9M1H8 EnsemblPlants:AT3G54490.1 GeneID:824614
            KEGG:ath:AT3G54490 TAIR:At3g54490 InParanoid:Q9M1H8 OMA:SKMNHFA
            PhylomeDB:Q9M1H8 Genevestigator:Q9M1H8 Uniprot:Q9M1H8
        Length = 233

 Score = 238 (88.8 bits), Expect = 8.1e-35, Sum P(2) = 8.1e-35
 Identities = 43/78 (55%), Positives = 62/78 (79%)

Query:    99 ITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVV 158
             I DLLVNITKH+ +PK ++L  +EKE+LL+K+++E+KQLP + +KD+  +YYGL++ QVV
Sbjct:   155 IEDLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLPYLQEKDSFVRYYGLKKKQVV 214

Query:   159 KVTYSGEITESHVTYRCV 176
             K+TYS E     VTYRC+
Sbjct:   215 KITYSKEPVGDFVTYRCI 232

 Score = 155 (59.6 bits), Expect = 8.1e-35, Sum P(2) = 8.1e-35
 Identities = 28/74 (37%), Positives = 47/74 (63%)

Query:    26 SCLSGFVDNGXXXXXXXXXXXXTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRL 85
             +C+S   D G            T  EML+DRGY V  +E++L++ +FR+++G+ P+++RL
Sbjct:    23 NCISKTEDTGGIESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELERL 82

Query:    86 RISISHQSDPSKRI 99
             RI +  +SDP K+I
Sbjct:    83 RICVPLRSDPKKKI 96


>UNIPROTKB|Q5R587 [details] [associations]
            symbol:POLR2E "DNA-directed RNA polymerases I, II, and III
            subunit RPABC1" species:9601 "Pongo abelii" [GO:0005634 "nucleus"
            evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase II, core
            complex" evidence=ISS] [GO:0006366 "transcription from RNA
            polymerase II promoter" evidence=ISS] [GO:0006468 "protein
            phosphorylation" evidence=ISS] [GO:0004672 "protein kinase
            activity" evidence=ISS] InterPro:IPR000783 InterPro:IPR005571
            Pfam:PF01191 Pfam:PF03871 ProDom:PD005155 GO:GO:0003677
            GO:GO:0006468 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 CTD:5434
            HOVERGEN:HBG057019 KO:K03013 Gene3D:3.40.1340.10 Gene3D:3.90.940.20
            InterPro:IPR014381 InterPro:IPR020608 PIRSF:PIRSF000747
            SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110 EMBL:CR860977
            RefSeq:NP_001126823.1 UniGene:Pab.18581 ProteinModelPortal:Q5R587
            GeneID:100173829 KEGG:pon:100173829 InParanoid:Q5R587
            Uniprot:Q5R587
        Length = 210

 Score = 192 (72.6 bits), Expect = 2.1e-23, Sum P(2) = 2.1e-23
 Identities = 35/76 (46%), Positives = 53/76 (69%)

Query:   101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
             +LL+NIT+H L P+H V+T +E  +LL +Y + E QLPR+   D +A+Y+G++RGQVVK+
Sbjct:   134 ELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKI 193

Query:   161 TYSGEITESHVTYRCV 176
                 E    ++TYR V
Sbjct:   194 IRPSETAGRYITYRLV 209

 Score = 92 (37.4 bits), Expect = 2.1e-23, Sum P(2) = 2.1e-23
 Identities = 17/57 (29%), Positives = 34/57 (59%)

Query:    48 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQSDPSKRI 99
             T++++  DRGY V   E++ ++++FRA +G  P   R     L + ++H  DP+ ++
Sbjct:    16 TIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQM 72


>ZFIN|ZDB-GENE-040801-83 [details] [associations]
            symbol:polr2eb "polymerase (RNA) II (DNA directed)
            polypeptide E, b" species:7955 "Danio rerio" [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871
            ProDom:PD005155 ZFIN:ZDB-GENE-040801-83 GO:GO:0005634 GO:GO:0003677
            GO:GO:0006351 GO:GO:0003899 eggNOG:COG2012 HOGENOM:HOG000205213
            HOVERGEN:HBG057019 KO:K03013 OrthoDB:EOG479F81 Gene3D:3.40.1340.10
            Gene3D:3.90.940.20 InterPro:IPR014381 InterPro:IPR020608
            PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110
            GeneTree:ENSGT00390000013841 OMA:DEAETYK EMBL:CU695074
            EMBL:BC077151 IPI:IPI00497952 RefSeq:NP_001003564.1
            UniGene:Dr.82162 STRING:Q6DEG5 Ensembl:ENSDART00000035670
            GeneID:445170 KEGG:dre:445170 CTD:445170 InParanoid:Q6DEG5
            NextBio:20831932 Uniprot:Q6DEG5
        Length = 210

 Score = 194 (73.4 bits), Expect = 4.3e-23, Sum P(2) = 4.3e-23
 Identities = 36/76 (47%), Positives = 54/76 (71%)

Query:   101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
             +LL+NIT+H L P+H V+T +E  +LL +Y ++E QLPR+   D +A+Y+GL+RGQVVK+
Sbjct:   134 ELLINITEHELVPEHIVMTKEEVTELLARYKLKESQLPRIQAGDPVARYFGLKRGQVVKI 193

Query:   161 TYSGEITESHVTYRCV 176
                 E    ++TYR V
Sbjct:   194 IRPSETAGRYITYRLV 209

 Score = 87 (35.7 bits), Expect = 4.3e-23, Sum P(2) = 4.3e-23
 Identities = 16/57 (28%), Positives = 33/57 (57%)

Query:    48 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQSDPSKRI 99
             T++++  DRGY V   E++ ++ +FR+ +G  P   R     L + ++H  DP+ ++
Sbjct:    16 TIMQLCHDRGYLVTQDELDQTLDEFRSQFGDKPSEGRPRRNDLTVLVAHNDDPTDQM 72


>UNIPROTKB|F2Z4J4 [details] [associations]
            symbol:POLR2E "DNA-directed RNA polymerases I, II, and III
            subunit RPABC1" species:9913 "Bos taurus" [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0005665 "DNA-directed RNA polymerase II, core complex"
            evidence=IEA] [GO:0004672 "protein kinase activity" evidence=IEA]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000783
            InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871 ProDom:PD005155
            GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
            GO:GO:0005665 IPI:IPI00702043 UniGene:Bt.4678 Gene3D:3.40.1340.10
            Gene3D:3.90.940.20 InterPro:IPR014381 InterPro:IPR020608
            PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110
            GeneTree:ENSGT00390000013841 OMA:DEAETYK EMBL:DAAA02020247
            ProteinModelPortal:F2Z4J4 PRIDE:F2Z4J4 Ensembl:ENSBTAT00000027684
            Uniprot:F2Z4J4
        Length = 210

 Score = 192 (72.6 bits), Expect = 4.3e-23, Sum P(2) = 4.3e-23
 Identities = 35/76 (46%), Positives = 53/76 (69%)

Query:   101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
             +LL+NIT+H L P+H V+T +E  +LL +Y + E QLPR+   D +A+Y+G++RGQVVK+
Sbjct:   134 ELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKI 193

Query:   161 TYSGEITESHVTYRCV 176
                 E    ++TYR V
Sbjct:   194 IRPSETAGRYITYRLV 209

 Score = 89 (36.4 bits), Expect = 4.3e-23, Sum P(2) = 4.3e-23
 Identities = 16/57 (28%), Positives = 34/57 (59%)

Query:    48 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQSDPSKRI 99
             T++++  DRGY V   E++ ++++F+A +G  P   R     L + ++H  DP+ ++
Sbjct:    16 TIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQM 72


>UNIPROTKB|I3LSI7 [details] [associations]
            symbol:POLR2E "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
            complex" evidence=IEA] [GO:0004672 "protein kinase activity"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871
            ProDom:PD005155 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
            GO:GO:0003899 GO:GO:0005665 KO:K03013 Gene3D:3.40.1340.10
            Gene3D:3.90.940.20 InterPro:IPR014381 InterPro:IPR020608
            PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110
            GeneTree:ENSGT00390000013841 OMA:DEAETYK EMBL:FP475994
            RefSeq:XP_003354010.1 RefSeq:XP_003354011.1
            ProteinModelPortal:I3LSI7 PRIDE:I3LSI7 Ensembl:ENSSSCT00000023998
            GeneID:100623333 KEGG:ssc:100623333 Uniprot:I3LSI7
        Length = 210

 Score = 192 (72.6 bits), Expect = 4.3e-23, Sum P(2) = 4.3e-23
 Identities = 35/76 (46%), Positives = 53/76 (69%)

Query:   101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
             +LL+NIT+H L P+H V+T +E  +LL +Y + E QLPR+   D +A+Y+G++RGQVVK+
Sbjct:   134 ELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKI 193

Query:   161 TYSGEITESHVTYRCV 176
                 E    ++TYR V
Sbjct:   194 IRPSETAGRYITYRLV 209

 Score = 89 (36.4 bits), Expect = 4.3e-23, Sum P(2) = 4.3e-23
 Identities = 16/57 (28%), Positives = 34/57 (59%)

Query:    48 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQSDPSKRI 99
             T++++  DRGY V   E++ ++++F+A +G  P   R     L + ++H  DP+ ++
Sbjct:    16 TIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQM 72


>ASPGD|ASPL0000062840 [details] [associations]
            symbol:AN0752 species:162425 "Emericella nidulans"
            [GO:0006360 "transcription from RNA polymerase I promoter"
            evidence=IEA] [GO:0042797 "tRNA transcription from RNA polymerase
            III promoter" evidence=IEA] [GO:0006366 "transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0001055 "RNA polymerase
            II activity" evidence=IEA] [GO:0001056 "RNA polymerase III
            activity" evidence=IEA] [GO:0003968 "RNA-directed RNA polymerase
            activity" evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase
            II, core complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
            [GO:0005666 "DNA-directed RNA polymerase III complex" evidence=IEA]
            [GO:0005736 "DNA-directed RNA polymerase I complex" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000783
            InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871 ProDom:PD005155
            GO:GO:0005634 EMBL:BN001308 GO:GO:0003677 GO:GO:0006351
            EMBL:AACD01000012 GO:GO:0003899 eggNOG:COG2012 HOGENOM:HOG000205213
            KO:K03013 Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
            InterPro:IPR020608 PIRSF:PIRSF000747 SUPFAM:SSF53036
            SUPFAM:SSF55287 PROSITE:PS01110 OrthoDB:EOG40CMS4
            RefSeq:XP_658356.1 ProteinModelPortal:Q5BFC8 SMR:Q5BFC8
            STRING:Q5BFC8 EnsemblFungi:CADANIAT00001913 GeneID:2876528
            KEGG:ani:AN0752.2 OMA:EQDLLVN Uniprot:Q5BFC8
        Length = 235

 Score = 202 (76.2 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
 Identities = 39/76 (51%), Positives = 53/76 (69%)

Query:   101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
             DLLVNIT+H L PKH +L+ +EK KLL++Y ++E QLPR+   D +A+Y GL RGQVVK+
Sbjct:   159 DLLVNITRHELVPKHVLLSPEEKSKLLQRYRLKESQLPRIQVSDPVARYLGLRRGQVVKI 218

Query:   161 TYSGEITESHVTYRCV 176
                 E    + +YR V
Sbjct:   219 IRKSETAGRYASYRWV 234

 Score = 77 (32.2 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
 Identities = 17/43 (39%), Positives = 27/43 (62%)

Query:    48 TVLEMLKDRGYAVALSEINLSVQDFRAIY-GQD--PDVDRLRI 87
             TV EML+DRGY V   E+ + + +F+  Y G+   P  ++L+I
Sbjct:    25 TVFEMLQDRGYEVTEEEVKIDLDEFKRKYVGEKGYPSREKLKI 67


>UNIPROTKB|P19388 [details] [associations]
            symbol:POLR2E "DNA-directed RNA polymerases I, II, and III
            subunit RPABC1" species:9606 "Homo sapiens" [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=IEA] [GO:0019048 "virus-host interaction"
            evidence=IEA] [GO:0004672 "protein kinase activity" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0006366 "transcription from
            RNA polymerase II promoter" evidence=IDA;TAS] [GO:0005665
            "DNA-directed RNA polymerase II, core complex" evidence=IDA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
            evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
            "transcription-coupled nucleotide-excision repair" evidence=TAS]
            [GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006367
            "transcription initiation from RNA polymerase II promoter"
            evidence=TAS] [GO:0006368 "transcription elongation from RNA
            polymerase II promoter" evidence=TAS] [GO:0006370
            "7-methylguanosine mRNA capping" evidence=TAS] [GO:0006383
            "transcription from RNA polymerase III promoter" evidence=TAS]
            [GO:0006385 "transcription elongation from RNA polymerase III
            promoter" evidence=TAS] [GO:0006386 "termination of RNA polymerase
            III transcription" evidence=TAS] [GO:0008380 "RNA splicing"
            evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
            [GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
            "positive regulation of viral transcription" evidence=TAS]
            [GO:0006468 "protein phosphorylation" evidence=IDA]
            Reactome:REACT_216 Reactome:REACT_71 InterPro:IPR000783
            InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871 ProDom:PD005155
            Reactome:REACT_116125 GO:GO:0019048 GO:GO:0016032 GO:GO:0003677
            Reactome:REACT_1675 GO:GO:0006468 EMBL:CH471139 GO:GO:0006368
            GO:GO:0006367 GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006370
            GO:GO:0050434 GO:GO:0006283 Reactome:REACT_1892 GO:GO:0003899
            EMBL:AC004151 GO:GO:0006386 GO:GO:0006385 GO:GO:0005665 CTD:5434
            eggNOG:COG2012 HOGENOM:HOG000205213 HOVERGEN:HBG057019 KO:K03013
            OrthoDB:EOG479F81 Gene3D:3.40.1340.10 Gene3D:3.90.940.20
            InterPro:IPR014381 InterPro:IPR020608 PIRSF:PIRSF000747
            SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110 EMBL:J04965
            EMBL:S42643 EMBL:D38251 EMBL:AK312625 EMBL:BC004441 EMBL:BC034144
            IPI:IPI00291093 PIR:S52002 RefSeq:NP_002686.2 UniGene:Hs.24301
            ProteinModelPortal:P19388 SMR:P19388 DIP:DIP-56N IntAct:P19388
            MINT:MINT-193645 STRING:P19388 PhosphoSite:P19388 DMDM:116242767
            REPRODUCTION-2DPAGE:IPI00291093 SWISS-2DPAGE:P19388 PaxDb:P19388
            PeptideAtlas:P19388 PRIDE:P19388 DNASU:5434 Ensembl:ENST00000215587
            GeneID:5434 KEGG:hsa:5434 UCSC:uc002lre.4 GeneCards:GC19M001086
            HGNC:HGNC:9192 MIM:180664 neXtProt:NX_P19388 PharmGKB:PA33512
            InParanoid:P19388 OMA:DEAETYK PhylomeDB:P19388 GenomeRNAi:5434
            NextBio:21025 ArrayExpress:P19388 Bgee:P19388 CleanEx:HS_POLR2E
            Genevestigator:P19388 GermOnline:ENSG00000099817 Uniprot:P19388
        Length = 210

 Score = 192 (72.6 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
 Identities = 35/76 (46%), Positives = 53/76 (69%)

Query:   101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
             +LL+NIT+H L P+H V+T +E  +LL +Y + E QLPR+   D +A+Y+G++RGQVVK+
Sbjct:   134 ELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKI 193

Query:   161 TYSGEITESHVTYRCV 176
                 E    ++TYR V
Sbjct:   194 IRPSETAGRYITYRLV 209

 Score = 84 (34.6 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
 Identities = 16/57 (28%), Positives = 33/57 (57%)

Query:    48 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQSDPSKRI 99
             T++++  DRGY V   E++ ++++F+A  G  P   R     L + ++H  DP+ ++
Sbjct:    16 TIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTVLVAHNDDPTDQM 72


>UNIPROTKB|Q2T9T3 [details] [associations]
            symbol:POLR2E "DNA-directed RNA polymerases I, II, and III
            subunit RPABC1" species:9913 "Bos taurus" [GO:0006468 "protein
            phosphorylation" evidence=ISS] [GO:0005665 "DNA-directed RNA
            polymerase II, core complex" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0004672 "protein kinase activity" evidence=ISS]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871
            ProDom:PD005155 GO:GO:0003677 GO:GO:0006468 GO:GO:0006366
            GO:GO:0003899 GO:GO:0005665 EMBL:BC111280 IPI:IPI00702043
            RefSeq:NP_001033182.1 UniGene:Bt.4678 ProteinModelPortal:Q2T9T3
            STRING:Q2T9T3 PRIDE:Q2T9T3 GeneID:512971 KEGG:bta:512971 CTD:5434
            eggNOG:COG2012 HOGENOM:HOG000205213 HOVERGEN:HBG057019
            InParanoid:Q2T9T3 KO:K03013 OrthoDB:EOG479F81 NextBio:20870640
            Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
            InterPro:IPR020608 PIRSF:PIRSF000747 SUPFAM:SSF53036
            SUPFAM:SSF55287 PROSITE:PS01110 Uniprot:Q2T9T3
        Length = 210

 Score = 192 (72.6 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
 Identities = 35/76 (46%), Positives = 53/76 (69%)

Query:   101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
             +LL+NIT+H L P+H V+T +E  +LL +Y + E QLPR+   D +A+Y+G++RGQVVK+
Sbjct:   134 ELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKI 193

Query:   161 TYSGEITESHVTYRCV 176
                 E    ++TYR V
Sbjct:   194 IRPSETAGRYITYRLV 209

 Score = 80 (33.2 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
 Identities = 15/57 (26%), Positives = 33/57 (57%)

Query:    48 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQSDPSKRI 99
             T++++  DRGY V    ++ ++++F+A +G  P   R     L + ++H  DP+ ++
Sbjct:    16 TIMQLCHDRGYLVTQDGLDQTLEEFKAQFGGKPSEGRPRRTDLTVLVAHNDDPTDQM 72


>TAIR|locus:2174388 [details] [associations]
            symbol:RPB5C ""RNA polymerase II fifth largest subunit,
            C"" species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
            evidence=IEA;ISS] [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
            InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871
            ProDom:PD005155 GO:GO:0005634 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0006351 EMBL:AB013396
            GO:GO:0003899 eggNOG:COG2012 HOGENOM:HOG000205213 KO:K03013
            Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
            PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287 HSSP:P20434
            ProtClustDB:PLN03111 IPI:IPI00523401 RefSeq:NP_200606.1
            UniGene:At.55610 ProteinModelPortal:Q9FJL8 SMR:Q9FJL8 STRING:Q9FJL8
            PaxDb:Q9FJL8 PRIDE:Q9FJL8 EnsemblPlants:AT5G57980.1 GeneID:835909
            KEGG:ath:AT5G57980 TAIR:At5g57980 InParanoid:Q9FJL8 OMA:GYTIEES
            PhylomeDB:Q9FJL8 Genevestigator:Q9FJL8 Uniprot:Q9FJL8
        Length = 210

 Score = 190 (71.9 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
 Identities = 37/74 (50%), Positives = 53/74 (71%)

Query:   101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
             +L+ NIT+H L  K+ VL DQ K+KLL  Y++++ QLPR+L  D +A+YYGL+RGQVVK+
Sbjct:   134 ELVTNITEHKLVNKYYVLDDQAKKKLLNTYTVQDTQLPRILVTDPLARYYGLKRGQVVKI 193

Query:   161 TYSGEITESHVTYR 174
               S   +  + TYR
Sbjct:   194 RRSDATSLDYYTYR 207

 Score = 74 (31.1 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
 Identities = 13/25 (52%), Positives = 20/25 (80%)

Query:    48 TVLEMLKDRGYAVALSEINLSVQDF 72
             TVL+ML+DRGY +  S++NL  ++F
Sbjct:    17 TVLQMLRDRGYTIEESDLNLKREEF 41


>POMBASE|SPAC23C4.15 [details] [associations]
            symbol:rpb5 "DNA-directed RNA polymerase I, II and III
            subunit Rpb5" species:4896 "Schizosaccharomyces pombe" [GO:0003677
            "DNA binding" evidence=IEA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005665
            "DNA-directed RNA polymerase II, core complex" evidence=IDA]
            [GO:0005666 "DNA-directed RNA polymerase III complex" evidence=IGI]
            [GO:0005736 "DNA-directed RNA polymerase I complex" evidence=IGI]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0006360 "transcription from
            RNA polymerase I promoter" evidence=IGI] [GO:0006366 "transcription
            from RNA polymerase II promoter" evidence=IDA] [GO:0006383
            "transcription from RNA polymerase III promoter" evidence=IGI]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IGI]
            InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871
            ProDom:PD005155 PomBase:SPAC23C4.15 GO:GO:0005829 EMBL:CU329670
            GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006366 GO:GO:0006383
            GO:GO:0006360 GO:GO:0005736 GO:GO:0005666 GO:GO:0003899
            GO:GO:0005665 eggNOG:COG2012 HOGENOM:HOG000205213 KO:K03013
            Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
            InterPro:IPR020608 PIRSF:PIRSF000747 SUPFAM:SSF53036
            SUPFAM:SSF55287 PROSITE:PS01110 OMA:DEAETYK EMBL:AF027820
            EMBL:D43785 PIR:T38270 RefSeq:NP_593187.1 PDB:3H0G PDBsum:3H0G
            ProteinModelPortal:Q09191 SMR:Q09191 IntAct:Q09191
            MINT:MINT-1214324 STRING:Q09191 EnsemblFungi:SPAC23C4.15.1
            GeneID:2541910 KEGG:spo:SPAC23C4.15 OrthoDB:EOG40CMS4
            EvolutionaryTrace:Q09191 NextBio:20802997 Uniprot:Q09191
        Length = 210

 Score = 182 (69.1 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
 Identities = 35/75 (46%), Positives = 52/75 (69%)

Query:   100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
             +DL+VNIT H L PKH +L+  EK++LL +Y + E QLPR+   D +A+Y GL+RG+VVK
Sbjct:   133 SDLIVNITHHELVPKHILLSPDEKKELLDRYKLRETQLPRIQLADPVARYLGLKRGEVVK 192

Query:   160 VTYSGEITESHVTYR 174
             +    E +  + +YR
Sbjct:   193 IVRRSETSGRYNSYR 207

 Score = 75 (31.5 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
 Identities = 17/55 (30%), Positives = 35/55 (63%)

Query:    48 TVLEMLKDRGYAVALSEINLSVQDFRAIY-GQDPDVDRLRISI-SHQSDPSKRIT 100
             T  +++ DRGY V+ +E++L++  F+A++ G   ++DR  +S  +  S+ S + T
Sbjct:    17 TAHQLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLSFYAKPSNDSNKGT 71


>UNIPROTKB|F6X571 [details] [associations]
            symbol:POLR2E "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
            "DNA binding" evidence=IEA] InterPro:IPR000783 InterPro:IPR005571
            Pfam:PF01191 Pfam:PF03871 ProDom:PD005155 GO:GO:0005634
            GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 Gene3D:3.40.1340.10
            Gene3D:3.90.940.20 InterPro:IPR014381 InterPro:IPR020608
            PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110
            GeneTree:ENSGT00390000013841 OMA:DEAETYK Ensembl:ENSCAFT00000031075
            EMBL:AAEX03012666 Uniprot:F6X571
        Length = 210

 Score = 167 (63.8 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
 Identities = 32/76 (42%), Positives = 48/76 (63%)

Query:   101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
             +LL+NIT+H L P+H V+T +E  +LL +Y + E QLPR+   D  A+Y+G    +VVK+
Sbjct:   134 ELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDQKARYFGKSEAEVVKI 193

Query:   161 TYSGEITESHVTYRCV 176
                 E    ++TYR V
Sbjct:   194 IRPSETAGRYITYRLV 209

 Score = 89 (36.4 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
 Identities = 16/57 (28%), Positives = 34/57 (59%)

Query:    48 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQSDPSKRI 99
             T++++  DRGY V   E++ ++++F+A +G  P   R     L + ++H  DP+ ++
Sbjct:    16 TIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQM 72


>UNIPROTKB|E2R2E8 [details] [associations]
            symbol:POLR2E "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
            "DNA binding" evidence=IEA] InterPro:IPR000783 InterPro:IPR005571
            Pfam:PF01191 Pfam:PF03871 ProDom:PD005155 GO:GO:0005634
            GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 Gene3D:3.40.1340.10
            Gene3D:3.90.940.20 InterPro:IPR014381 InterPro:IPR020608
            PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110
            Ensembl:ENSCAFT00000031075 Uniprot:E2R2E8
        Length = 212

 Score = 159 (61.0 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
 Identities = 33/78 (42%), Positives = 48/78 (61%)

Query:   101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERG--QVV 158
             +LL+NIT+H L P+H V+T +E  +LL +Y + E QLPR+   D  A+Y+G      QVV
Sbjct:   134 ELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDQKARYFGKSEADPQVV 193

Query:   159 KVTYSGEITESHVTYRCV 176
             K+    E    ++TYR V
Sbjct:   194 KIIRPSETAGRYITYRLV 211

 Score = 89 (36.4 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
 Identities = 16/57 (28%), Positives = 34/57 (59%)

Query:    48 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQSDPSKRI 99
             T++++  DRGY V   E++ ++++F+A +G  P   R     L + ++H  DP+ ++
Sbjct:    16 TIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQM 72


>DICTYBASE|DDB_G0291636 [details] [associations]
            symbol:rpb5 "RNA polymerase II core subunit"
            species:44689 "Dictyostelium discoideum" [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0006383 "transcription from RNA polymerase III promoter"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006360 "transcription from RNA
            polymerase I promoter" evidence=ISS] [GO:0005736 "DNA-directed RNA
            polymerase I complex" evidence=ISS] [GO:0005666 "DNA-directed RNA
            polymerase III complex" evidence=ISS] [GO:0005665 "DNA-directed RNA
            polymerase II, core complex" evidence=ISS] [GO:0044351
            "macropinocytosis" evidence=RCA] InterPro:IPR000783
            InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871 ProDom:PD005155
            dictyBase:DDB_G0291636 EMBL:AAFI02000177 GenomeReviews:CM000155_GR
            GO:GO:0003677 GO:GO:0006366 GO:GO:0006383 GO:GO:0006360
            GO:GO:0005736 GO:GO:0005666 GO:GO:0003899 GO:GO:0005665
            eggNOG:COG2012 KO:K03013 Gene3D:3.40.1340.10 Gene3D:3.90.940.20
            InterPro:IPR014381 InterPro:IPR020608 PIRSF:PIRSF000747
            SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110 RefSeq:XP_635268.1
            HSSP:P20434 ProteinModelPortal:Q54EH2 STRING:Q54EH2 GeneID:8628212
            KEGG:ddi:DDB_G0291636 ProtClustDB:PTZ00061 Uniprot:Q54EH2
        Length = 197

 Score = 202 (76.2 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
 Identities = 40/77 (51%), Positives = 53/77 (68%)

Query:   101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
             +LLVNIT H L PKH +LT +EK +LL +Y ++E QLPR+   D +A+YYGL RG VVK+
Sbjct:   121 ELLVNITHHQLVPKHILLTKEEKLELLTRYKMKESQLPRIQTNDPVARYYGLSRGHVVKI 180

Query:   161 TYSGEITESHVTYR-CV 176
                 E    ++TYR CV
Sbjct:   181 VRPSETAGRYITYRLCV 197

 Score = 44 (20.5 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query:    48 TVLEMLKDRGYAVALSE 64
             TVL+ML DR Y +   E
Sbjct:    13 TVLQMLSDREYIITAYE 29


>TAIR|locus:2087842 [details] [associations]
            symbol:NRPB5 species:3702 "Arabidopsis thaliana"
            [GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA;ISS]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA;ISS] [GO:0000418 "DNA-directed RNA
            polymerase IV complex" evidence=IPI] [GO:0005665 "DNA-directed RNA
            polymerase II, core complex" evidence=IPI] [GO:0006626 "protein
            targeting to mitochondrion" evidence=RCA] [GO:0051604 "protein
            maturation" evidence=RCA] InterPro:IPR000783 InterPro:IPR005571
            Pfam:PF01191 Pfam:PF03871 ProDom:PD005155 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0006351 EMBL:AB022215
            GO:GO:0003899 GO:GO:0000418 GO:GO:0005665 eggNOG:COG2012
            HOGENOM:HOG000205213 KO:K03013 Gene3D:3.40.1340.10
            Gene3D:3.90.940.20 InterPro:IPR014381 InterPro:IPR020608
            PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110
            OMA:DEAETYK UniGene:At.28063 HSSP:O27122 EMBL:AF019248
            EMBL:AF370551 EMBL:AF412101 EMBL:AY086150 EMBL:BT002130
            IPI:IPI00519907 PIR:T51950 RefSeq:NP_188871.1 UniGene:At.6260
            ProteinModelPortal:O81098 SMR:O81098 DIP:DIP-48677N IntAct:O81098
            STRING:O81098 PaxDb:O81098 PRIDE:O81098 EnsemblPlants:AT3G22320.1
            GeneID:821801 KEGG:ath:AT3G22320 TAIR:At3g22320 InParanoid:O81098
            PhylomeDB:O81098 ProtClustDB:PLN03111 Genevestigator:O81098
            Uniprot:O81098
        Length = 205

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 41/76 (53%), Positives = 58/76 (76%)

Query:   101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
             ++LVNI +HVL P+HQVLT +EK+ LL++Y+++E QLPR+   D IA+Y+GL+RGQVVK+
Sbjct:   129 EMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVVKI 188

Query:   161 TYSGEITESHVTYRCV 176
                 E    +VTYR V
Sbjct:   189 IRPSETAGRYVTYRYV 204


>GENEDB_PFALCIPARUM|PF13_0341 [details] [associations]
            symbol:PF13_0341 "DNA-directed RNA polymerase
            2, putative" species:5833 "Plasmodium falciparum" [GO:0005665
            "DNA-directed RNA polymerase II, core complex" evidence=ISS]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=ISS] InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191
            Pfam:PF03871 ProDom:PD005155 GO:GO:0003677 GO:GO:0006366
            EMBL:AL844509 GO:GO:0003899 GO:GO:0005665 HOGENOM:HOG000205213
            KO:K03013 Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
            PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287
            ProtClustDB:PTZ00061 OMA:DEAETYK RefSeq:XP_001350359.1 HSSP:O27122
            ProteinModelPortal:Q8ID59 PRIDE:Q8ID59
            EnsemblProtists:PF13_0341:mRNA GeneID:814300 KEGG:pfa:PF13_0341
            EuPathDB:PlasmoDB:PF3D7_1364800 Uniprot:Q8ID59
        Length = 205

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 39/77 (50%), Positives = 52/77 (67%)

Query:   100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
             T+LLVNITKH L P+H  LT  EK+ LL++Y I E +LPR+   D + +Y+GL +GQVVK
Sbjct:   128 TELLVNITKHELVPRHIPLTSDEKKNLLQRYKIMENKLPRIQDVDPVCRYFGLSKGQVVK 187

Query:   160 VTYSGEITESHVTYRCV 176
             +    E    +VTYR V
Sbjct:   188 IIRPSETAGRYVTYRLV 204


>UNIPROTKB|Q8ID59 [details] [associations]
            symbol:PF13_0341 "DNA-directed RNA polymerase 2, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0005665 "DNA-directed
            RNA polymerase II, core complex" evidence=ISS] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=ISS]
            InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871
            ProDom:PD005155 GO:GO:0003677 GO:GO:0006366 EMBL:AL844509
            GO:GO:0003899 GO:GO:0005665 HOGENOM:HOG000205213 KO:K03013
            Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
            PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287
            ProtClustDB:PTZ00061 OMA:DEAETYK RefSeq:XP_001350359.1 HSSP:O27122
            ProteinModelPortal:Q8ID59 PRIDE:Q8ID59
            EnsemblProtists:PF13_0341:mRNA GeneID:814300 KEGG:pfa:PF13_0341
            EuPathDB:PlasmoDB:PF3D7_1364800 Uniprot:Q8ID59
        Length = 205

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 39/77 (50%), Positives = 52/77 (67%)

Query:   100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
             T+LLVNITKH L P+H  LT  EK+ LL++Y I E +LPR+   D + +Y+GL +GQVVK
Sbjct:   128 TELLVNITKHELVPRHIPLTSDEKKNLLQRYKIMENKLPRIQDVDPVCRYFGLSKGQVVK 187

Query:   160 VTYSGEITESHVTYRCV 176
             +    E    +VTYR V
Sbjct:   188 IIRPSETAGRYVTYRLV 204


>WB|WBGene00019246 [details] [associations]
            symbol:rpb-5 species:6239 "Caenorhabditis elegans"
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
            RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0009792 "embryo development ending in birth or egg hatching"
            evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
            "hermaphrodite genitalia development" evidence=IMP] [GO:0032502
            "developmental process" evidence=IMP] InterPro:IPR000783
            InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871 ProDom:PD005155
            GO:GO:0005634 GO:GO:0009792 GO:GO:0003677 GO:GO:0006351
            GO:GO:0040035 GO:GO:0003899 eggNOG:COG2012 HOGENOM:HOG000205213
            KO:K03013 Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
            InterPro:IPR020608 PIRSF:PIRSF000747 SUPFAM:SSF53036
            SUPFAM:SSF55287 PROSITE:PS01110 EMBL:FO081567 RefSeq:NP_491961.1
            ProteinModelPortal:Q9N5K2 SMR:Q9N5K2 IntAct:Q9N5K2 STRING:Q9N5K2
            PaxDb:Q9N5K2 EnsemblMetazoa:H27M09.2 GeneID:172412
            KEGG:cel:CELE_H27M09.2 CTD:172412 WormBase:H27M09.2
            GeneTree:ENSGT00390000013841 InParanoid:Q9N5K2 OMA:DQPLETF
            NextBio:875409 Uniprot:Q9N5K2
        Length = 211

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 36/76 (47%), Positives = 55/76 (72%)

Query:   101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
             +L+VNIT+H L P+H V+T +EK +LL +Y +++ QLPR+ + D +A+Y+GL RGQVVK+
Sbjct:   135 ELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRGQVVKI 194

Query:   161 TYSGEITESHVTYRCV 176
                 E    ++TYR V
Sbjct:   195 IRPSETAGRYITYRLV 210


>SGD|S000000358 [details] [associations]
            symbol:RPB5 "RNA polymerase subunit ABC27" species:4932
            "Saccharomyces cerevisiae" [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005736
            "DNA-directed RNA polymerase I complex" evidence=IDA] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=IGI;IMP]
            [GO:0006360 "transcription from RNA polymerase I promoter"
            evidence=IMP] [GO:0006383 "transcription from RNA polymerase III
            promoter" evidence=IMP] [GO:0005666 "DNA-directed RNA polymerase
            III complex" evidence=IDA] [GO:0003968 "RNA-directed RNA polymerase
            activity" evidence=IDA] [GO:0001054 "RNA polymerase I activity"
            evidence=IC] [GO:0001055 "RNA polymerase II activity" evidence=IDA]
            [GO:0001056 "RNA polymerase III activity" evidence=IDA] [GO:0042797
            "tRNA transcription from RNA polymerase III promoter" evidence=IDA]
            [GO:0005665 "DNA-directed RNA polymerase II, core complex"
            evidence=IDA] InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191
            Pfam:PF03871 ProDom:PD005155 SGD:S000000358 GO:GO:0003677
            EMBL:BK006936 GO:GO:0006366 GO:GO:0006360 EMBL:X71329 EMBL:S59774
            GO:GO:0005736 GO:GO:0005666 GO:GO:0003899 Reactome:REACT_83470
            GO:GO:0005665 eggNOG:COG2012 HOGENOM:HOG000205213 KO:K03013
            Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
            InterPro:IPR020608 PIRSF:PIRSF000747 SUPFAM:SSF53036
            SUPFAM:SSF55287 PROSITE:PS01110 GeneTree:ENSGT00390000013841
            OMA:DEAETYK OrthoDB:EOG40CMS4 EMBL:X53287 EMBL:Z36023 PIR:A34588
            RefSeq:NP_009712.1 PDB:1DZF PDB:1I3Q PDB:1I50 PDB:1I6H PDB:1K83
            PDB:1NIK PDB:1NT9 PDB:1PQV PDB:1R5U PDB:1R9S PDB:1R9T PDB:1SFO
            PDB:1TWA PDB:1TWC PDB:1TWF PDB:1TWG PDB:1TWH PDB:1WCM PDB:1Y1V
            PDB:1Y1W PDB:1Y1Y PDB:1Y77 PDB:2B63 PDB:2B8K PDB:2E2H PDB:2E2I
            PDB:2E2J PDB:2JA5 PDB:2JA6 PDB:2JA7 PDB:2JA8 PDB:2NVQ PDB:2NVT
            PDB:2NVX PDB:2NVY PDB:2NVZ PDB:2R7Z PDB:2R92 PDB:2R93 PDB:2VUM
            PDB:2YU9 PDB:3CQZ PDB:3FKI PDB:3GTG PDB:3GTJ PDB:3GTK PDB:3GTL
            PDB:3GTM PDB:3GTO PDB:3GTP PDB:3GTQ PDB:3H3V PDB:3HOU PDB:3HOV
            PDB:3HOW PDB:3HOX PDB:3HOY PDB:3HOZ PDB:3I4M PDB:3I4N PDB:3K1F
            PDB:3K7A PDB:3M3Y PDB:3M4O PDB:3PO2 PDB:3PO3 PDB:3QT1 PDB:3RZD
            PDB:3RZO PDB:3S14 PDB:3S15 PDB:3S16 PDB:3S17 PDB:3S1M PDB:3S1N
            PDB:3S1Q PDB:3S1R PDB:3S2D PDB:3S2H PDB:4A3B PDB:4A3C PDB:4A3D
            PDB:4A3E PDB:4A3F PDB:4A3G PDB:4A3I PDB:4A3J PDB:4A3K PDB:4A3L
            PDB:4A3M PDB:4A93 PDB:4BBR PDB:4BBS PDBsum:1DZF PDBsum:1I3Q
            PDBsum:1I50 PDBsum:1I6H PDBsum:1K83 PDBsum:1NIK PDBsum:1NT9
            PDBsum:1PQV PDBsum:1R5U PDBsum:1R9S PDBsum:1R9T PDBsum:1SFO
            PDBsum:1TWA PDBsum:1TWC PDBsum:1TWF PDBsum:1TWG PDBsum:1TWH
            PDBsum:1WCM PDBsum:1Y1V PDBsum:1Y1W PDBsum:1Y1Y PDBsum:1Y77
            PDBsum:2B63 PDBsum:2B8K PDBsum:2E2H PDBsum:2E2I PDBsum:2E2J
            PDBsum:2JA5 PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8 PDBsum:2NVQ
            PDBsum:2NVT PDBsum:2NVX PDBsum:2NVY PDBsum:2NVZ PDBsum:2R7Z
            PDBsum:2R92 PDBsum:2R93 PDBsum:2VUM PDBsum:2YU9 PDBsum:3CQZ
            PDBsum:3FKI PDBsum:3GTG PDBsum:3GTJ PDBsum:3GTK PDBsum:3GTL
            PDBsum:3GTM PDBsum:3GTO PDBsum:3GTP PDBsum:3GTQ PDBsum:3H3V
            PDBsum:3HOU PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX PDBsum:3HOY
            PDBsum:3HOZ PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F PDBsum:3K7A
            PDBsum:3M3Y PDBsum:3M4O PDBsum:3PO2 PDBsum:3PO3 PDBsum:3QT1
            PDBsum:3RZD PDBsum:3RZO PDBsum:3S14 PDBsum:3S15 PDBsum:3S16
            PDBsum:3S17 PDBsum:3S1M PDBsum:3S1N PDBsum:3S1Q PDBsum:3S1R
            PDBsum:3S2D PDBsum:3S2H PDBsum:4A3B PDBsum:4A3C PDBsum:4A3D
            PDBsum:4A3E PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I PDBsum:4A3J
            PDBsum:4A3K PDBsum:4A3L PDBsum:4A3M PDBsum:4A93 PDBsum:4BBR
            PDBsum:4BBS ProteinModelPortal:P20434 SMR:P20434 DIP:DIP-71N
            IntAct:P20434 MINT:MINT-530046 STRING:P20434 PaxDb:P20434
            PeptideAtlas:P20434 EnsemblFungi:YBR154C GeneID:852451
            KEGG:sce:YBR154C CYGD:YBR154c Reactome:REACT_87991
            EvolutionaryTrace:P20434 NextBio:971369 Genevestigator:P20434
            GermOnline:YBR154C GO:GO:0042797 Uniprot:P20434
        Length = 215

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 53/157 (33%), Positives = 79/157 (50%)

Query:    23 PTESCLSGFVDNGXXXXXXXXXXXXTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD--P 80
             PTE  +S F D G             V  M   + + + + E N     F  +Y  +  P
Sbjct:    64 PTEESISKFPDMGSLWVEFCDEPSVGVKTM---KTFVIHIQEKNFQTGIF--VYQNNITP 118

Query:    81 DVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRM 140
                +L  SI   +  +     L+VNIT H L PKH  L+  EK +LLK+Y ++E QLPR+
Sbjct:   119 SAMKLVPSIPPATIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQLPRI 178

Query:   141 LKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR-CV 176
              + D +A Y GL+RG+VVK+    E +  + +YR C+
Sbjct:   179 QRADPVALYLGLKRGEVVKIIRKSETSGRYASYRICM 215


>FB|FBgn0033571 [details] [associations]
            symbol:Rpb5 "Rpb5" species:7227 "Drosophila melanogaster"
            [GO:0005665 "DNA-directed RNA polymerase II, core complex"
            evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI]
            InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871
            ProDom:PD005155 EMBL:AE013599 GO:GO:0007095 GO:GO:0003677
            GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 eggNOG:COG2012 KO:K03013
            Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
            InterPro:IPR020608 PIRSF:PIRSF000747 SUPFAM:SSF53036
            SUPFAM:SSF55287 PROSITE:PS01110 GeneTree:ENSGT00390000013841
            HSSP:P20434 OMA:DEAETYK EMBL:AY071329 RefSeq:NP_610630.1
            UniGene:Dm.5984 SMR:Q7JZF5 STRING:Q7JZF5 EnsemblMetazoa:FBtr0088237
            EnsemblMetazoa:FBtr0331935 GeneID:36160 KEGG:dme:Dmel_CG11979
            UCSC:CG11979-RA CTD:36160 FlyBase:FBgn0033571 InParanoid:Q7JZF5
            OrthoDB:EOG4MCVGC GenomeRNAi:36160 NextBio:797126 Uniprot:Q7JZF5
        Length = 210

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 35/77 (45%), Positives = 56/77 (72%)

Query:   100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
             ++LL+NIT+H L P+H V+T +EK++LL +Y ++E  L R+   D +A+Y+GL+RGQVVK
Sbjct:   133 SELLINITEHELVPEHVVMTVEEKQELLSRYKLKENMLMRIQAGDPVARYFGLKRGQVVK 192

Query:   160 VTYSGEITESHVTYRCV 176
             +  S E    +++YR V
Sbjct:   193 IIRSSETAGRYISYRLV 209


>UNIPROTKB|F1NHV9 [details] [associations]
            symbol:POLR2E "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0004672
            "protein kinase activity" evidence=IEA] [GO:0005665 "DNA-directed
            RNA polymerase II, core complex" evidence=IEA] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=IEA]
            InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871
            ProDom:PD005155 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
            GO:GO:0003899 GO:GO:0005665 Gene3D:3.40.1340.10 Gene3D:3.90.940.20
            InterPro:IPR014381 InterPro:IPR020608 PIRSF:PIRSF000747
            SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110
            GeneTree:ENSGT00390000013841 OMA:DEAETYK EMBL:AADN02066638
            IPI:IPI00604284 Ensembl:ENSGALT00000004080 Uniprot:F1NHV9
        Length = 215

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 35/76 (46%), Positives = 53/76 (69%)

Query:   101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
             +LL+NIT+H L P+H V+T +E  +LL +Y + E QLPR+   D +A+Y+G++RGQVVK+
Sbjct:   139 ELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKI 198

Query:   161 TYSGEITESHVTYRCV 176
                 E    ++TYR V
Sbjct:   199 IRPSETAGRYITYRLV 214


>MGI|MGI:1913670 [details] [associations]
            symbol:Polr2e "polymerase (RNA) II (DNA directed)
            polypeptide E" species:10090 "Mus musculus" [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005665 "DNA-directed RNA polymerase II, core complex"
            evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISO] [GO:0006468 "protein phosphorylation"
            evidence=ISO] InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191
            Pfam:PF03871 ProDom:PD005155 MGI:MGI:1913670 GO:GO:0003677
            GO:GO:0004672 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 CTD:5434
            eggNOG:COG2012 HOGENOM:HOG000205213 HOVERGEN:HBG057019 KO:K03013
            OrthoDB:EOG479F81 Gene3D:3.40.1340.10 Gene3D:3.90.940.20
            InterPro:IPR014381 InterPro:IPR020608 PIRSF:PIRSF000747
            SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110
            GeneTree:ENSGT00390000013841 OMA:DEAETYK EMBL:BC045521
            IPI:IPI00337955 RefSeq:NP_079830.2 UniGene:Mm.18579
            ProteinModelPortal:Q80UW8 SMR:Q80UW8 IntAct:Q80UW8 STRING:Q80UW8
            PhosphoSite:Q80UW8 PaxDb:Q80UW8 PRIDE:Q80UW8 DNASU:66420
            Ensembl:ENSMUST00000004786 GeneID:66420 KEGG:mmu:66420
            InParanoid:Q80UW8 NextBio:321639 Bgee:Q80UW8 CleanEx:MM_POLR2E
            Genevestigator:Q80UW8 GermOnline:ENSMUSG00000004667 Uniprot:Q80UW8
        Length = 210

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 35/76 (46%), Positives = 53/76 (69%)

Query:   101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
             +LL+NIT+H L P+H V+T +E  +LL +Y + E QLPR+   D +A+Y+G++RGQVVK+
Sbjct:   134 ELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYFGIKRGQVVKI 193

Query:   161 TYSGEITESHVTYRCV 176
                 E    ++TYR V
Sbjct:   194 IRPSETAGRYITYRLV 209


>RGD|1589817 [details] [associations]
            symbol:Polr2e "polymerase (RNA) II (DNA directed) polypeptide E"
            species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] [GO:0004672 "protein kinase activity"
            evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=IEA;ISO;ISS]
            [GO:0005665 "DNA-directed RNA polymerase II, core complex"
            evidence=ISO;ISS] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISO;ISS] [GO:0006468 "protein phosphorylation"
            evidence=ISO] InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191
            Pfam:PF03871 ProDom:PD005155 RGD:1589817 GO:GO:0003677
            GO:GO:0004672 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 CTD:5434
            eggNOG:COG2012 HOGENOM:HOG000205213 HOVERGEN:HBG057019 KO:K03013
            OrthoDB:EOG479F81 Gene3D:3.40.1340.10 Gene3D:3.90.940.20
            InterPro:IPR014381 InterPro:IPR020608 PIRSF:PIRSF000747
            SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110
            GeneTree:ENSGT00390000013841 EMBL:BC158787 IPI:IPI00765968
            RefSeq:NP_001103084.1 UniGene:Rn.65038 ProteinModelPortal:B0BNE2
            SMR:B0BNE2 STRING:B0BNE2 PRIDE:B0BNE2 Ensembl:ENSRNOT00000018169
            GeneID:690966 KEGG:rno:690966 UCSC:RGD:1589817 NextBio:742073
            ArrayExpress:B0BNE2 Genevestigator:B0BNE2 Uniprot:B0BNE2
        Length = 210

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 35/76 (46%), Positives = 53/76 (69%)

Query:   101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
             +LL+NIT+H L P+H V+T +E  +LL +Y + E QLPR+   D +A+Y+G++RGQVVK+
Sbjct:   134 ELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYFGIKRGQVVKI 193

Query:   161 TYSGEITESHVTYRCV 176
                 E    ++TYR V
Sbjct:   194 IRPSETAGRYITYRLV 209


>TAIR|locus:2089338 [details] [associations]
            symbol:AT3G16680 species:3702 "Arabidopsis thaliana"
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
            RNA polymerase activity" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM;IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191
            ProDom:PD005155 GO:GO:0005634 EMBL:CP002686 GO:GO:0003677
            GO:GO:0006351 GO:GO:0003899 Gene3D:3.40.1340.10 Gene3D:3.90.940.20
            SUPFAM:SSF53036 IPI:IPI00538237 RefSeq:NP_188290.1 UniGene:At.53338
            ProteinModelPortal:F4J2R9 SMR:F4J2R9 EnsemblPlants:AT3G16680.1
            GeneID:820920 KEGG:ath:AT3G16680 Uniprot:F4J2R9
        Length = 87

 Score = 86 (35.3 bits), Expect = 0.00061, P = 0.00061
 Identities = 14/29 (48%), Positives = 23/29 (79%)

Query:   101 DLLVNITKHVLKPKHQVLTDQEKEKLLKK 129
             +L+VN+ +HV  P+HQ LT +EK+K L++
Sbjct:    50 ELIVNVKEHVFVPEHQALTTEEKQKFLER 78


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.133   0.378    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      177       153   0.00081  105 3  11 23  0.39    32
                                                     30  0.41    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  25
  No. of states in DFA:  558 (59 KB)
  Total size of DFA:  131 KB (2083 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.17u 0.10s 16.27t   Elapsed:  00:00:01
  Total cpu time:  16.17u 0.10s 16.27t   Elapsed:  00:00:01
  Start:  Sat May 11 01:40:08 2013   End:  Sat May 11 01:40:09 2013
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with NRPE5 NRPE5 NRPE5 AT3G57080	protein from Arabidopsis thaliana	2.6e-47
BLAST match view associations BLAST with RPB5D RPB5D RPB5D AT2G41340	protein from Arabidopsis thaliana	1.4e-44
BLAST match view associations BLAST with RPB5E RPB5E RPB5E AT3G54490	protein from Arabidopsis thaliana	8.1e-35
BLAST match view associations BLAST with POLR2E POLR2E POLR2E DNA-directed RNA polymerases I, II, and III subunit RPABC1	protein from Pongo abelii	2.1e-23
BLAST match view associations BLAST with polr2eb polr2eb polr2eb polymerase (RNA) II (DNA directed) polypeptide E, b	gene_product from Danio rerio	4.3e-23
BLAST match view associations BLAST with POLR2E POLR2E POLR2E DNA-directed RNA polymerases I, II, and III subunit RPABC1	protein from Bos taurus	4.3e-23
BLAST match view associations BLAST with POLR2E POLR2E POLR2E Uncharacterized protein	protein from Sus scrofa	4.3e-23
BLAST match view associations BLAST with POLR2E POLR2E POLR2E DNA-directed RNA polymerases I, II, and III subunit RPABC1	protein from Homo sapiens	1.4e-22
BLAST match view associations BLAST with POLR2E POLR2E POLR2E DNA-directed RNA polymerases I, II, and III subunit RPABC1	protein from Bos taurus	3.7e-22
BLAST match view associations BLAST with RPB5C RPB5C RPB5C AT5G57980	protein from Arabidopsis thaliana	2.5e-21
BLAST match view associations BLAST with POLR2E POLR2E POLR2E Uncharacterized protein	protein from Canis lupus familiaris	1.7e-20
BLAST match view associations BLAST with POLR2E POLR2E POLR2E Uncharacterized protein	protein from Canis lupus familiaris	1.2e-19
BLAST match view associations BLAST with rpb5 rpb5 rpb5 RNA polymerase II core subunit	gene from Dictyostelium discoideum	1.9e-19
BLAST match view associations BLAST with NRPB5 NRPB5 NRPB5 AT3G22320	protein from Arabidopsis thaliana	1.6e-17
BLAST match view associations BLAST with PF13_0341 PF13_0341 PF13_0341 DNA-directed RNA polymerase 2, putative	gene from Plasmodium falciparum	7.7e-16
BLAST match view associations BLAST with PF13_0341 PF13_0341 PF13_0341 DNA-directed RNA polymerase 2, putative	protein from Plasmodium falciparum 3D7	7.7e-16
BLAST match view associations BLAST with rpb-5 rpb-5 rpb-5	gene from Caenorhabditis elegans	9.8e-16
BLAST match view associations BLAST with RPB5 RPB5 RPB5 RNA polymerase subunit ABC27	gene from Saccharomyces cerevisiae	2.0e-15
BLAST match view associations BLAST with Rpb5 Rpb5 Rpb5	protein from Drosophila melanogaster	3.3e-15
BLAST match view associations BLAST with POLR2E POLR2E POLR2E Uncharacterized protein	protein from Gallus gallus	3.3e-15
BLAST match view associations BLAST with Polr2e Polr2e Polr2e polymerase (RNA) II (DNA directed) polypeptide E	protein from Mus musculus	3.3e-15
BLAST match view associations BLAST with Polr2e Polr2e Polr2e polymerase (RNA) II (DNA directed) polypeptide E	gene from Rattus norvegicus	3.3e-15
BLAST match view associations BLAST with AT3G16680 AT3G16680 AT3G16680	protein from Arabidopsis thaliana	0.00061