BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030447
(177 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|351723899|ref|NP_001236527.1| uncharacterized protein LOC100306033 [Glycine max]
gi|255627335|gb|ACU14012.1| unknown [Glycine max]
Length = 237
Score = 200 bits (509), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 108/212 (50%), Positives = 131/212 (61%), Gaps = 59/212 (27%)
Query: 25 ESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR 84
+ CLS FVDNGS +S RYYLSRRT LEMLKDRGY++ EI+LS+ DFR I+GQ PD DR
Sbjct: 26 KGCLSKFVDNGSVESHRYYLSRRTTLEMLKDRGYSIPSHEIDLSLSDFRDIHGQFPDPDR 85
Query: 85 LRISISHQSDPSKRI----------------------------TDLLVNITKHV------ 110
LR+S++H ++ SKRI T L++ + H+
Sbjct: 86 LRLSLTHATNSSKRILVIFCGPGVVKVTAIRNTAGQIINRDTLTGLILIVENHITSQALK 145
Query: 111 -------------------------LKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDA 145
LKPKHQVLTD++K LLKKY+IEEKQLPRML+ DA
Sbjct: 146 AVNLFSFKVEIFQITDLLVNITKHVLKPKHQVLTDKQKINLLKKYNIEEKQLPRMLQTDA 205
Query: 146 IAQYYGLERGQVVKVTYSGEITESHVTYRCVW 177
IA+YYGLERGQVVKVTYSGE+T+ HVTYRCVW
Sbjct: 206 IARYYGLERGQVVKVTYSGEVTQMHVTYRCVW 237
>gi|255576548|ref|XP_002529165.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
gi|223531389|gb|EEF33224.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
Length = 238
Score = 199 bits (505), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 116/234 (49%), Positives = 142/234 (60%), Gaps = 65/234 (27%)
Query: 3 DGNGYDSSMEMEGGNGYNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVAL 62
+GNG D+S +N E C S + D+G+ ++ RYYLSRRTVLEML+DRGY+V
Sbjct: 11 NGNGTDASER------FNMEGLGKCFSSYADDGTHETHRYYLSRRTVLEMLRDRGYSVPS 64
Query: 63 SEINLSVQDF------------------------------------------RAIYGQDP 80
SEI+LS+Q+F RAI GQ
Sbjct: 65 SEIDLSLQEFRAIHGPNPDIDRLKFSATHTSDPSKRMLVLFGGPGIIKVSTIRAIAGQIV 124
Query: 81 DVDRL-------RISISHQSDPSK----------RITDLLVNITKHVLKPKHQVLTDQEK 123
+ D L + I++Q+ + +ITDLLVNITKHVLKPKHQVLTD+EK
Sbjct: 125 NKDSLTGLILVLQNQITNQAMKAVDLFKFKVEMFQITDLLVNITKHVLKPKHQVLTDREK 184
Query: 124 EKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 177
+KLLK Y IEEKQLPR+L+KDAIA+YYGLE+GQVVKVTYSGEITESHVTYRCVW
Sbjct: 185 QKLLKDYCIEEKQLPRLLRKDAIARYYGLEKGQVVKVTYSGEITESHVTYRCVW 238
>gi|388510192|gb|AFK43162.1| unknown [Medicago truncatula]
Length = 248
Score = 196 bits (497), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 114/246 (46%), Positives = 142/246 (57%), Gaps = 71/246 (28%)
Query: 2 EDGNGYD-------SSMEMEGGNGYNGEPT----ESCLSGFVDNGSRDSLRYYLSRRTVL 50
E+G G + ++ME+E G+ +P CL DNGS +S RYYLSRRTVL
Sbjct: 4 ENGGGQNGTTETAITTMEIENGD-ITTQPQLQEQPQCLFTKKDNGSIESHRYYLSRRTVL 62
Query: 51 EMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRI----------- 99
EMLKDRGY++ EI LS+ DFR I+GQ PDVDRLR++ +H ++PSKRI
Sbjct: 63 EMLKDRGYSIPSDEIQLSLDDFRQIHGQSPDVDRLRLTATHATNPSKRILVVFSGPGIVK 122
Query: 100 -----------------TDLLV----NITKHVLK-------------------------- 112
T L++ IT LK
Sbjct: 123 VNGVRDIAGQIVNRESLTGLILIVQNQITSQALKAVNLLSFKVEILQITDLLVNATKHVL 182
Query: 113 -PKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHV 171
PKHQVLTD++K+ LLKKY I+EKQLPRML+ DAIA+YYGL+RGQVVKVTY+GEIT+ HV
Sbjct: 183 KPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHV 242
Query: 172 TYRCVW 177
TYRCVW
Sbjct: 243 TYRCVW 248
>gi|357509489|ref|XP_003625033.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|124359979|gb|ABN07995.1| RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal
[Medicago truncatula]
gi|355500048|gb|AES81251.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 248
Score = 196 bits (497), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 114/246 (46%), Positives = 142/246 (57%), Gaps = 71/246 (28%)
Query: 2 EDGNGYD-------SSMEMEGGNGYNGEPT----ESCLSGFVDNGSRDSLRYYLSRRTVL 50
E+G G + ++ME+E G+ +P CL DNGS +S RYYLSRRTVL
Sbjct: 4 ENGGGQNGTTETAITTMEIENGD-ITTQPQLQEQPQCLFTKKDNGSIESHRYYLSRRTVL 62
Query: 51 EMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRI----------- 99
EMLKDRGY++ EI LS+ DFR I+GQ PDVDRLR++ +H ++PSKRI
Sbjct: 63 EMLKDRGYSIPSDEIQLSLDDFRQIHGQSPDVDRLRLTATHATNPSKRILVVFSGPGIVK 122
Query: 100 -----------------TDLLV----NITKHVLK-------------------------- 112
T L++ IT LK
Sbjct: 123 VNGVRDIAGQIVNRESLTGLILIVQNQITSQALKAVNLLSFKVEIFQITDLLVNATKHVL 182
Query: 113 -PKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHV 171
PKHQVLTD++K+ LLKKY I+EKQLPRML+ DAIA+YYGL+RGQVVKVTY+GEIT+ HV
Sbjct: 183 KPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHV 242
Query: 172 TYRCVW 177
TYRCVW
Sbjct: 243 TYRCVW 248
>gi|297739911|emb|CBI30093.3| unnamed protein product [Vitis vinifera]
Length = 330
Score = 195 bits (496), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 107/231 (46%), Positives = 136/231 (58%), Gaps = 64/231 (27%)
Query: 11 MEMEGGNGYNGE-----PTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEI 65
+ M+GG ++G+ + CLS FVD G +S RYYL+RRT+LEML+DRGY++ +I
Sbjct: 100 VSMDGGGWFDGDLNGDFEVKRCLSSFVDEGRIESHRYYLARRTLLEMLRDRGYSIPALDI 159
Query: 66 NLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRITDLLV--------------------- 104
++S+QDFR+ Y Q PD DRLRIS + +SDPSK+I +
Sbjct: 160 DISLQDFRSFYSQKPDPDRLRISAALRSDPSKKILVIFCGPDVVKVNAIRSIATQIVNKD 219
Query: 105 -----------NITKHVLK---------------------------PKHQVLTDQEKEKL 126
+IT LK PKH+VLTDQEK KL
Sbjct: 220 SLSKLILVLQNHITSQALKAVDLFSFQVEKFQITDLLVNITKHVLKPKHRVLTDQEKNKL 279
Query: 127 LKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 177
LKKYS+ EKQLPRML++DAIA+YYGLE+GQVVKV Y+GEIT SHVTYRCVW
Sbjct: 280 LKKYSLNEKQLPRMLQQDAIARYYGLEKGQVVKVIYNGEITGSHVTYRCVW 330
>gi|359482221|ref|XP_003632734.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Vitis vinifera]
Length = 229
Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 107/229 (46%), Positives = 135/229 (58%), Gaps = 64/229 (27%)
Query: 13 MEGGNGYNGE-----PTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINL 67
M+GG ++G+ + CLS FVD G +S RYYL+RRT+LEML+DRGY++ +I++
Sbjct: 1 MDGGGWFDGDLNGDFEVKRCLSSFVDEGRIESHRYYLARRTLLEMLRDRGYSIPALDIDI 60
Query: 68 SVQDFRAIYGQDPDVDRLRISISHQSDPSKRITDLLV----------------------- 104
S+QDFR+ Y Q PD DRLRIS + +SDPSK+I +
Sbjct: 61 SLQDFRSFYSQKPDPDRLRISAALRSDPSKKILVIFCGPDVVKVNAIRSIATQIVNKDSL 120
Query: 105 ---------NITKHVLK---------------------------PKHQVLTDQEKEKLLK 128
+IT LK PKH+VLTDQEK KLLK
Sbjct: 121 SKLILVLQNHITSQALKAVDLFSFQVEKFQITDLLVNITKHVLKPKHRVLTDQEKNKLLK 180
Query: 129 KYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 177
KYS+ EKQLPRML++DAIA+YYGLE+GQVVKV Y+GEIT SHVTYRCVW
Sbjct: 181 KYSLNEKQLPRMLQQDAIARYYGLEKGQVVKVIYNGEITGSHVTYRCVW 229
>gi|224139746|ref|XP_002323257.1| predicted protein [Populus trichocarpa]
gi|222867887|gb|EEF05018.1| predicted protein [Populus trichocarpa]
Length = 216
Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 113/210 (53%), Positives = 134/210 (63%), Gaps = 59/210 (28%)
Query: 27 CLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFR------------- 73
CLS FVD GS +S RYYLSRRTVLEMLKDRGY+V SEI++S+QDFR
Sbjct: 7 CLSSFVDEGSTESHRYYLSRRTVLEMLKDRGYSVPSSEIDISLQDFRGVYGQNPDIELLK 66
Query: 74 --AIYGQDPD-------------------------VDR---------LRISISHQS---- 93
A + DP DR L+ +I++Q+
Sbjct: 67 FSATHKSDPSKRMLVIFCGLGVVKVGMIRLITVQITDRDSLTGLILVLQNNITNQAMKAL 126
Query: 94 DPSK------RITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 147
D K +ITDLLVNITKH+LKPKHQVL++Q K++LLKKYSIEEKQLPR+LKKDAI+
Sbjct: 127 DLFKFKIEIFQITDLLVNITKHILKPKHQVLSEQAKQRLLKKYSIEEKQLPRLLKKDAIS 186
Query: 148 QYYGLERGQVVKVTYSGEITESHVTYRCVW 177
+YYGLERGQVVKVTY G+IT SHVTYRCVW
Sbjct: 187 RYYGLERGQVVKVTYDGDITGSHVTYRCVW 216
>gi|15230206|ref|NP_191267.1| rpb5 RNA polymerase subunit family protein [Arabidopsis thaliana]
gi|6911878|emb|CAB72178.1| putative protein [Arabidopsis thaliana]
gi|26452919|dbj|BAC43537.1| unknown protein [Arabidopsis thaliana]
gi|28973011|gb|AAO63830.1| unknown protein [Arabidopsis thaliana]
gi|332646091|gb|AEE79612.1| rpb5 RNA polymerase subunit family protein [Arabidopsis thaliana]
Length = 222
Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 102/218 (46%), Positives = 127/218 (58%), Gaps = 61/218 (27%)
Query: 21 GEPTES--CLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQ 78
G+ T S CLS +VD S +S RYYL+RR L+ML+DRGY V+ +INLS+ DFR +YG+
Sbjct: 5 GKETASVLCLSKYVDLSSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGE 64
Query: 79 DPDVDRLRISISHQSDPSKR----------------------------ITDLLVNITKHV 110
PDVDRLRIS H+SD +K+ IT L++ + HV
Sbjct: 65 RPDVDRLRISALHRSDSTKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHV 124
Query: 111 -------------------------------LKPKHQVLTDQEKEKLLKKYSIEEKQLPR 139
LKP+HQVL D+EK LLKK+SIEEKQLPR
Sbjct: 125 TNQALKAIELFSFKVEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPR 184
Query: 140 MLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 177
+ KKDAI +YYGLE+GQVVKV Y GE+TESHV +RCVW
Sbjct: 185 ISKKDAIVRYYGLEKGQVVKVNYRGELTESHVAFRCVW 222
>gi|21617912|gb|AAM66962.1| putative DNA-directed RNA polymerase 23kD subunit [Arabidopsis
thaliana]
Length = 222
Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 101/218 (46%), Positives = 127/218 (58%), Gaps = 61/218 (27%)
Query: 21 GEPTES--CLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQ 78
G+ T S CLS +VD S +S RYYL+RR L++L+DRGY V+ +INLS+ DFR +YG+
Sbjct: 5 GKETASVLCLSKYVDLSSEESHRYYLARRNGLQILRDRGYEVSDEDINLSLHDFRTVYGE 64
Query: 79 DPDVDRLRISISHQSDPSKR----------------------------ITDLLVNITKHV 110
PDVDRLRIS H+SD +K+ IT L++ + HV
Sbjct: 65 RPDVDRLRISALHRSDSTKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHV 124
Query: 111 -------------------------------LKPKHQVLTDQEKEKLLKKYSIEEKQLPR 139
LKP+HQVL D+EK LLKK+SIEEKQLPR
Sbjct: 125 TNQALKAIELFSFKVEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPR 184
Query: 140 MLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 177
+ KKDAI +YYGLE+GQVVKV Y GE+TESHV +RCVW
Sbjct: 185 ISKKDAIVRYYGLEKGQVVKVNYRGELTESHVAFRCVW 222
>gi|297817026|ref|XP_002876396.1| eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297322234|gb|EFH52655.1| eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 222
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/210 (46%), Positives = 124/210 (59%), Gaps = 59/210 (28%)
Query: 27 CLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR 86
CLS +VD S +S RYYL+R+ L+ML+DRGY V+ +INLS+ DFRA+YG+ PDVDRLR
Sbjct: 13 CLSKYVDPSSEESHRYYLARQNALQMLRDRGYQVSDEDINLSLHDFRAVYGERPDVDRLR 72
Query: 87 ISISHQSDPSKR----------------------------ITDLLV----NITKHVLK-- 112
IS H+SD SK+ +T L++ +TK +K
Sbjct: 73 ISAQHRSDSSKKVKVVFFGTGMVKVNAIRSIAADVLSQETVTGLILVLQSQVTKQAMKAI 132
Query: 113 -------------------------PKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 147
P+H+VL D+EK LLKK+SIEEKQLPR+ KKDAI
Sbjct: 133 ELFSFKVEIFQITDLLVNITKHALKPQHRVLNDKEKTTLLKKFSIEEKQLPRISKKDAIV 192
Query: 148 QYYGLERGQVVKVTYSGEITESHVTYRCVW 177
+YYGLE+GQVVKV Y GE+TESHV YRCVW
Sbjct: 193 RYYGLEKGQVVKVNYRGELTESHVAYRCVW 222
>gi|449437743|ref|XP_004136650.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
gi|449524637|ref|XP_004169328.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
Length = 227
Score = 179 bits (454), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 100/224 (44%), Positives = 131/224 (58%), Gaps = 63/224 (28%)
Query: 17 NGYNGEPTE----SCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDF 72
+G+ EP +CLS ++D+G+ +S RY+LSRRTV+EMLKDRGY + I+ S+Q F
Sbjct: 4 DGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFSLQQF 63
Query: 73 ------------------------------------------RAIYGQDPDVDRL----- 85
R I GQ + D L
Sbjct: 64 RETFGQFPDVDRLKLSAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHGLIL 123
Query: 86 --RISISHQSDPSK----------RITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIE 133
+ I++Q+ + +ITDLLVNITKH LKP HQVLT++EK+KLLK+YSIE
Sbjct: 124 IVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIE 183
Query: 134 EKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 177
EKQLPRML+ DAIA+YYGLE+GQVVKVTY G++T +H+TYRCVW
Sbjct: 184 EKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTRAHITYRCVW 227
>gi|15227327|ref|NP_181665.1| RNA polymerase II fifth largest subunit, D [Arabidopsis thaliana]
gi|3894190|gb|AAC78539.1| putative DNA-directed RNA polymerase 23kD subunit [Arabidopsis
thaliana]
gi|19310385|gb|AAL84932.1| At2g41340/F13H10.11 [Arabidopsis thaliana]
gi|330254867|gb|AEC09961.1| RNA polymerase II fifth largest subunit, D [Arabidopsis thaliana]
Length = 218
Score = 162 bits (409), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 92/215 (42%), Positives = 119/215 (55%), Gaps = 59/215 (27%)
Query: 21 GEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDP 80
G+ E + + S + +YYL+RRT +EML+DRGY V+ +INLS+Q FRA+YG+ P
Sbjct: 3 GKGKEIVVGHSISKSSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHP 62
Query: 81 DVDRLRISISHQSDPSKR----------------------------ITDLLVNITKHV-- 110
DVD LRIS H+ D SK+ IT L++ + H+
Sbjct: 63 DVDLLRISAKHRFDSSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITN 122
Query: 111 -----------------------------LKPKHQVLTDQEKEKLLKKYSIEEKQLPRML 141
L+PKHQVL D+EKE LLKK+SIEEKQLPR+
Sbjct: 123 QALKAVELFSFKVELFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLS 182
Query: 142 KKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 176
KD I +YYGLE GQV+KVTY E++ESHVTYRCV
Sbjct: 183 SKDPIVRYYGLETGQVMKVTYKDELSESHVTYRCV 217
>gi|297824079|ref|XP_002879922.1| eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297325761|gb|EFH56181.1| eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 218
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 119/216 (55%), Gaps = 59/216 (27%)
Query: 21 GEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDP 80
G+ E + +D S + +YYL+RRT +EML+DRGY V+ ++N S++ FRA+YG+
Sbjct: 3 GKGKEIAVVQSIDKPSVECHKYYLARRTTMEMLRDRGYDVSDEDVNFSLEQFRALYGERL 62
Query: 81 DVDRLRISISHQSDPSKR----------------------------ITDLLVNITKHV-- 110
DVDRLRIS H+ D SK+ IT L++ + H+
Sbjct: 63 DVDRLRISAKHRFDSSKKIMVVFCGTGMVKVNAMRAIAADVLNRESITGLILVLQSHITN 122
Query: 111 -----------------------------LKPKHQVLTDQEKEKLLKKYSIEEKQLPRML 141
L+PKHQVL D+EKE LLKKYSIEEKQLPR+
Sbjct: 123 QALKAVELFSFKVELFEITDLLVNVTKHVLRPKHQVLNDKEKESLLKKYSIEEKQLPRLS 182
Query: 142 KKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 177
KD I +YYGLE GQV+KVTY E++ESHVTYRCV
Sbjct: 183 SKDPIVRYYGLETGQVMKVTYKDELSESHVTYRCVM 218
>gi|8896071|gb|AAF81222.1| RPB5d [Brassica napus]
Length = 223
Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 93/212 (43%), Positives = 120/212 (56%), Gaps = 60/212 (28%)
Query: 26 SCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRL 85
S LS +D DS YYL+RRT +EML+DRGY ++ +INL++Q+FRA+YG P+VDRL
Sbjct: 12 SGLSKSLDESRVDSHSYYLARRTTMEMLRDRGYDISNEDINLTLQEFRALYGDRPNVDRL 71
Query: 86 RISISHQSDPSKRI----------------------------TDLLV----NITKHVLK- 112
RIS H SD SK+I T L++ +IT LK
Sbjct: 72 RISAQHCSDSSKKIAVVFCGSGIVKVSAIRDIAADVLGRENLTGLILVLQSDITNQALKA 131
Query: 113 --------------------------PKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAI 146
PKH VL +QEKE L KK+SI+E+QLP++LKKD
Sbjct: 132 VELFSFKVELFQLTELLVNITKHVLRPKHHVLNEQEKESLFKKFSIQEQQLPKLLKKDPT 191
Query: 147 AQYYGLERGQVVKVTYSGEITES-HVTYRCVW 177
A+YYGLE+GQVV+VTY GE +ES HV+YRC W
Sbjct: 192 AKYYGLEKGQVVEVTYKGEGSESDHVSYRCAW 223
>gi|224053296|ref|XP_002297750.1| predicted protein [Populus trichocarpa]
gi|222845008|gb|EEE82555.1| predicted protein [Populus trichocarpa]
Length = 233
Score = 155 bits (391), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 94/230 (40%), Positives = 129/230 (56%), Gaps = 62/230 (26%)
Query: 9 SSMEMEGGNGYNGEPT---ESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEI 65
++ E GNG + + CL+ FVD GS +S RYY+SRRTVLEMLKDRGY V SE+
Sbjct: 3 ATTETFNGNGASFHGVLDRDRCLTDFVDEGSAESYRYYISRRTVLEMLKDRGYDVLDSEL 62
Query: 66 NLSVQDF------------------------------------------RAIYGQDPDVD 83
N S+ +F R +YGQ + +
Sbjct: 63 NRSLTEFRSVFGNSPDLDSLRFSVSLRSIPHKKTLVMFLGTDEIKTANIRTVYGQILNKE 122
Query: 84 RL-------RISISH------QSDPSK----RITDLLVNITKHVLKPKHQVLTDQEKEKL 126
L + ++H + P K +ITDLLVNITKHVL+P+ +LT ++K+++
Sbjct: 123 SLHGLILILQSKMNHFAKKELEKFPFKVEVFQITDLLVNITKHVLQPQMDILTAEQKQQV 182
Query: 127 LKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 176
+ KY +E+KQLPRML+ DAI QYYGL++GQ+VK+TYSGEI + VTYRCV
Sbjct: 183 MNKYKLEDKQLPRMLESDAIVQYYGLQKGQMVKITYSGEIVDHLVTYRCV 232
>gi|115487264|ref|NP_001066119.1| Os12g0139500 [Oryza sativa Japonica Group]
gi|113648626|dbj|BAF29138.1| Os12g0139500 [Oryza sativa Japonica Group]
gi|125535725|gb|EAY82213.1| hypothetical protein OsI_37416 [Oryza sativa Indica Group]
gi|125578454|gb|EAZ19600.1| hypothetical protein OsJ_35178 [Oryza sativa Japonica Group]
gi|346703760|emb|CBX24428.1| hypothetical_protein [Oryza glaberrima]
Length = 227
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 112/210 (53%), Gaps = 59/210 (28%)
Query: 27 CLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDF-------------- 72
C++ +D GS +S R +L+RRT +EML+DRGY+V +EI ++ +F
Sbjct: 18 CIASMIDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLA 77
Query: 73 ----------------------------RAIYGQDPDVDRLRISISHQSDPSKRI----- 99
R IY Q + + R+ + QS R
Sbjct: 78 FTTTLVSDPSKKVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIK 137
Query: 100 ------------TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 147
TDLLVNITKHVLKPKH+VL+ +K KLLK+Y++E+ QLPRML+ DA+A
Sbjct: 138 EIFKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLETDAVA 197
Query: 148 QYYGLERGQVVKVTYSGEITESHVTYRCVW 177
+YYG ++G VVKVTY GE+T V YRCV+
Sbjct: 198 RYYGFDKGTVVKVTYDGELTGKRVAYRCVF 227
>gi|115484123|ref|NP_001065723.1| Os11g0143400 [Oryza sativa Japonica Group]
gi|77548620|gb|ABA91417.1| RNA polymerase Rpb5, N-terminal domain containing protein,
expressed [Oryza sativa Japonica Group]
gi|113644427|dbj|BAF27568.1| Os11g0143400 [Oryza sativa Japonica Group]
gi|125576186|gb|EAZ17408.1| hypothetical protein OsJ_32930 [Oryza sativa Japonica Group]
Length = 227
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 111/210 (52%), Gaps = 59/210 (28%)
Query: 27 CLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDF-------------- 72
C++ +D GS +S R +L+RRT +EML+DRGY+V +EI ++ +F
Sbjct: 18 CIASMIDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLA 77
Query: 73 ----------------------------RAIYGQDPDVDRLRISISHQSDPSKRI----- 99
R IY Q + + R+ + QS R
Sbjct: 78 FTTTLVSDPSKKVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIK 137
Query: 100 ------------TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 147
TDLLVNITKHVLKPKH+VL+ +K KLLK+Y++E+ QLPRML+ DA+A
Sbjct: 138 EIFKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLETDAVA 197
Query: 148 QYYGLERGQVVKVTYSGEITESHVTYRCVW 177
+YYG ++G VVKV Y GE+T V YRCV+
Sbjct: 198 RYYGFDKGTVVKVIYDGELTGKRVAYRCVF 227
>gi|125533361|gb|EAY79909.1| hypothetical protein OsI_35073 [Oryza sativa Indica Group]
Length = 227
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 117/227 (51%), Gaps = 60/227 (26%)
Query: 10 SMEMEGGNGYNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSV 69
+ EME + E E C++ +D GS +S R +L+RRT +EML+DRGY+V +EI +
Sbjct: 2 AAEMEADDVDVHEVPE-CIASMIDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTP 60
Query: 70 QDF------------------------------------------RAIYGQDPDVDRLRI 87
+F R IY Q + + R+
Sbjct: 61 PEFRAWWAEKPGIERLAFTTTLVSDPSKKVQLVFCPPEPVKIATIREIYLQTKEENLSRL 120
Query: 88 SISHQSDPSKRI-----------------TDLLVNITKHVLKPKHQVLTDQEKEKLLKKY 130
+ QS R TDLLVNITKHVLKPKH+VL+ +K KLLK+Y
Sbjct: 121 VLILQSKILSRAREAIKEIFKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEY 180
Query: 131 SIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 177
++E+ QLPRML+ DA+A+YYG ++G VVKV Y GE+T V YRCV+
Sbjct: 181 NVEDSQLPRMLETDAVARYYGFDKGTVVKVIYDGELTGKRVAYRCVF 227
>gi|357153158|ref|XP_003576358.1| PREDICTED: uncharacterized protein LOC100836489 [Brachypodium
distachyon]
Length = 468
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 114/210 (54%), Gaps = 59/210 (28%)
Query: 27 CLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDF-------------- 72
C+S +D+G +S R +L+RRT LEML+DR YAV +++ ++ +F
Sbjct: 259 CVSSMIDSGDPESHRLFLARRTALEMLRDRRYAVPEADLARTLPEFRAWWAERPEIDRLS 318
Query: 73 ----------------------------RAIYGQDPDVDRLRISISHQSDPSKR------ 98
R +YG+ D + + + QS + R
Sbjct: 319 FSTTLASDPSNKVQLVFCPPEPFKIAAIREVYGRVKDENLSCLILVLQSKITSRAKDAIK 378
Query: 99 -----------ITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 147
I +LLVN+TKHVLKP+H+VLT +EK LLKKY++ + QLPRML+ DAIA
Sbjct: 379 EIFKYKVDVFQIAELLVNVTKHVLKPEHEVLTPEEKAHLLKKYNVVDSQLPRMLETDAIA 438
Query: 148 QYYGLERGQVVKVTYSGEITESHVTYRCVW 177
+YYGL +G V++VTY GE+T +HVTYRC++
Sbjct: 439 RYYGLGKGTVLRVTYDGELTGNHVTYRCIF 468
>gi|87162511|gb|ABD28306.1| RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal
[Medicago truncatula]
Length = 224
Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 86/218 (39%), Positives = 119/218 (54%), Gaps = 61/218 (27%)
Query: 20 NGEPTES-CLSGFVDNGSR-DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG 77
NG T S CL + S +++RY+ R+T+++ML DRGY V+ S++ LS+ +FR+ +G
Sbjct: 6 NGNETRSECLVRICNEESNIETIRYFECRKTLMDMLHDRGYNVSESDLTLSLSEFRSRFG 65
Query: 78 ----------------------------------------QDPDVDRLRIS---ISHQSD 94
Q VD+ R+S + QS
Sbjct: 66 EFPKPHTLGVSVSLRSNPSIKVQVVFPGTDDIRKSNLIVIQSQIVDKERLSRLILVMQSK 125
Query: 95 ------------PSK----RITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLP 138
P K ++ DLLVN+TKHVL+PK++VLT EK+KLL KY +EEKQLP
Sbjct: 126 MTSYARKELENCPFKVEIIQLNDLLVNVTKHVLQPKYEVLTANEKQKLLNKYKVEEKQLP 185
Query: 139 RMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 176
ML+ DAIA YYGLE+GQVVK+++SGE+ S V YRCV
Sbjct: 186 HMLRTDAIASYYGLEKGQVVKISHSGEMFNSLVMYRCV 223
>gi|346703375|emb|CBX25472.1| hypothetical_protein [Oryza glaberrima]
Length = 206
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/205 (39%), Positives = 109/205 (53%), Gaps = 59/205 (28%)
Query: 32 VDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDF------------------- 72
+D GS +S R +L+RRT +EML+DRGY+V +EI ++ +F
Sbjct: 2 IDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLAFTTTL 61
Query: 73 -----------------------RAIYGQDPDVDRLRISISHQSDPSKRI---------- 99
R IY Q + + R+ + QS R
Sbjct: 62 VSDPSKKVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIFKF 121
Query: 100 -------TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGL 152
TDLLVNITKHVLKPKH+VL+ +K KLLK+Y++E+ QLPRML+ DA+A+YYG
Sbjct: 122 KVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLETDAVARYYGF 181
Query: 153 ERGQVVKVTYSGEITESHVTYRCVW 177
++G VVKVTY GE+T V YRCV+
Sbjct: 182 DKGTVVKVTYDGELTGKRVAYRCVF 206
>gi|195635599|gb|ACG37268.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Zea mays]
Length = 264
Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 114/211 (54%), Gaps = 60/211 (28%)
Query: 26 SCLSGFVDNG-SRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDF------------ 72
+C+S +D G S +S R +L+RRT LEML+DRGYAV E+ ++ +F
Sbjct: 53 ACISTMLDRGGSVESHRLFLARRTALEMLRDRGYAVPEEELARTLPEFRAWWEYRPELER 112
Query: 73 ------------------------------RAIYGQ--DPDVDRLRISISHQSDPSKR-- 98
R IY + D ++ RL + + + + R
Sbjct: 113 LAFSTTLASDPSSKVKVVFCPPGPVKIAAIRLIYTEVKDENLSRLILILQGKIMSTTRES 172
Query: 99 -------------ITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDA 145
IT+LLVNITKHVLKPKH+VLT + K KLLK+Y++ + QLPRML+ DA
Sbjct: 173 IKEIFRFKVDTFQITELLVNITKHVLKPKHEVLTAEGKAKLLKEYNVVDSQLPRMLENDA 232
Query: 146 IAQYYGLERGQVVKVTYSGEITESHVTYRCV 176
+A+YYGL +G VVKV Y E+T +HVTYRC+
Sbjct: 233 VARYYGLGKGTVVKVIYDSELTGNHVTYRCI 263
>gi|414588639|tpg|DAA39210.1| TPA: DNA-directed RNA polymerase II polypeptide [Zea mays]
Length = 263
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 114/211 (54%), Gaps = 60/211 (28%)
Query: 26 SCLSGFVDNG-SRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDF------------ 72
+C+S +D G S +S R +L+RRT LEML+DRGYAV E+ ++ +F
Sbjct: 52 ACISTMLDRGGSVESHRLFLARRTALEMLRDRGYAVPEEELARTLPEFRAWWEYRPELER 111
Query: 73 ------------------------------RAIYGQ--DPDVDRLRISISHQSDPSKR-- 98
R IY + D ++ RL + + + + R
Sbjct: 112 LAFSTTLTSDPSSKVKVVFCPPGPVKIAAIRLIYTEVKDENLSRLILILQGKIMSTTRES 171
Query: 99 -------------ITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDA 145
IT+LLVNITKHVLKPKH+VLT + K KLLK+Y++ + QLPRML+ DA
Sbjct: 172 IKEIFRFKVDTFQITELLVNITKHVLKPKHEVLTAEGKAKLLKEYNVVDSQLPRMLENDA 231
Query: 146 IAQYYGLERGQVVKVTYSGEITESHVTYRCV 176
+A+YYGL +G VVKV Y E+T +HVTYRC+
Sbjct: 232 VARYYGLGKGTVVKVIYDSELTGNHVTYRCI 262
>gi|226491902|ref|NP_001141853.1| uncharacterized protein LOC100273995 [Zea mays]
gi|194706176|gb|ACF87172.1| unknown [Zea mays]
Length = 248
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 114/211 (54%), Gaps = 60/211 (28%)
Query: 26 SCLSGFVDNG-SRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDF------------ 72
+C+S +D G S +S R +L+RRT LEML+DRGYAV E+ ++ +F
Sbjct: 37 ACISTMLDRGGSVESHRLFLARRTALEMLRDRGYAVPEEELARTLPEFRAWWEYRPELER 96
Query: 73 ------------------------------RAIYGQ--DPDVDRLRISISHQSDPSKR-- 98
R IY + D ++ RL + + + + R
Sbjct: 97 LAFSTTLTSDPSSKVKVVFCPPGPVKIAAIRLIYTEVKDENLSRLILILQGKIMSTTRES 156
Query: 99 -------------ITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDA 145
IT+LLVNITKHVLKPKH+VLT + K KLLK+Y++ + QLPRML+ DA
Sbjct: 157 IKEIFRFKVDTFQITELLVNITKHVLKPKHEVLTAEGKAKLLKEYNVVDSQLPRMLENDA 216
Query: 146 IAQYYGLERGQVVKVTYSGEITESHVTYRCV 176
+A+YYGL +G VVKV Y E+T +HVTYRC+
Sbjct: 217 VARYYGLGKGTVVKVIYDSELTGNHVTYRCI 247
>gi|346703279|emb|CBX25377.1| hypothetical_protein [Oryza brachyantha]
Length = 226
Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 114/226 (50%), Gaps = 60/226 (26%)
Query: 10 SMEMEGGNGYNGEPTESCLSGFVD-NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEIN-- 66
+ EME + P C++ VD +GS +S R +L+RRT LEML+DRGY+V EI
Sbjct: 3 AAEMEIDDDLPEVP--DCIASMVDRSGSVESKRLFLARRTALEMLRDRGYSVPDEEIART 60
Query: 67 ----------------------------------------LSVQDFRAIYGQDPDVDRLR 86
+ + R IY Q + R
Sbjct: 61 LPEFRAWWGEKSEIERLAFTTTLVSDPSKKVQIVFCPPEPVKIATIREIYRQTEGENLSR 120
Query: 87 ISISHQSDPSKR---------------ITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYS 131
+ + QS R +LLVNITKHVLKPKH+VL+ +K KLLK+Y+
Sbjct: 121 LILILQSRILSRARESIKEIFKLKVDIFQELLVNITKHVLKPKHEVLSAAQKAKLLKQYN 180
Query: 132 IEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 177
+E+ QLPRML+ D +A+YYGL++G VVKV Y E+T +HV YRCV+
Sbjct: 181 VEDSQLPRMLETDPVARYYGLDKGTVVKVIYDSELTGNHVAYRCVF 226
>gi|297742693|emb|CBI35146.3| unnamed protein product [Vitis vinifera]
Length = 731
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 113/224 (50%), Gaps = 62/224 (27%)
Query: 11 MEMEGGNGYNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQ 70
ME + G+ NG SC++ ++ GS +S RYYLSRRT+ +ML DRGY V SE+ S+
Sbjct: 511 MESQAGSHGNG----SCITADMEQGSIESYRYYLSRRTLFQMLSDRGYNVPHSELTRSLS 566
Query: 71 DFRAIYGQDPDVDRLRISISHQSDPSKRITDLLV---NITKHVLKPKHQ----------V 117
DFRA +G +PD RLRI + S PSK+I + I K V++ Q +
Sbjct: 567 DFRASFGHNPDPSRLRICLPLISSPSKKILVVFCGTDEIRKAVIRVIFQQINREGLHRLI 626
Query: 118 LTDQEK-----EKLLKKYSI---------------------------------------- 132
L Q K K++ +Y I
Sbjct: 627 LVLQSKMNSHARKVVDEYPIKVEFFQITELLINITKHVSVPKHEILSAQEKRKLVNKYKL 686
Query: 133 EEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 176
E+KQ P M K DAIA+YYGLE+GQVVK+TY G +T+S VTYRCV
Sbjct: 687 EDKQFPIMQKDDAIARYYGLEKGQVVKITYKGGMTDSLVTYRCV 730
>gi|359487223|ref|XP_002269723.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Vitis vinifera]
Length = 221
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 113/224 (50%), Gaps = 62/224 (27%)
Query: 11 MEMEGGNGYNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQ 70
ME + G+ NG SC++ ++ GS +S RYYLSRRT+ +ML DRGY V SE+ S+
Sbjct: 1 MESQAGSHGNG----SCITADMEQGSIESYRYYLSRRTLFQMLSDRGYNVPHSELTRSLS 56
Query: 71 DFRAIYGQDPDVDRLRISISHQSDPSKRITDLLVN---ITKHVLKPKHQ----------V 117
DFRA +G +PD RLRI + S PSK+I + I K V++ Q +
Sbjct: 57 DFRASFGHNPDPSRLRICLPLISSPSKKILVVFCGTDEIRKAVIRVIFQQINREGLHRLI 116
Query: 118 LTDQEK-----EKLLKKYSI---------------------------------------- 132
L Q K K++ +Y I
Sbjct: 117 LVLQSKMNSHARKVVDEYPIKVEFFQITELLINITKHVSVPKHEILSAQEKRKLVNKYKL 176
Query: 133 EEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 176
E+KQ P M K DAIA+YYGLE+GQVVK+TY G +T+S VTYRCV
Sbjct: 177 EDKQFPIMQKDDAIARYYGLEKGQVVKITYKGGMTDSLVTYRCV 220
>gi|357155279|ref|XP_003577067.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Brachypodium distachyon]
Length = 270
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 112/212 (52%), Gaps = 62/212 (29%)
Query: 28 LSGFVDNGSRDSLR---YYLSRRTVLEMLKDRGYAVALSEINLSVQDF------------ 72
++ VD G R S +L+RRT LEML+DRGY+V E+ ++ +F
Sbjct: 59 MASMVDRGGRASHEVHSLFLARRTALEMLRDRGYSVPEPELARTLTEFRAWWAEKPEMRR 118
Query: 73 ------------------------------RAIYGQDPDVDRLRISISHQSD-------- 94
R +Y Q + + R+ + Q D
Sbjct: 119 LSFSATFASDHSNKVQFVFCPPKPVNITTIREVYSQIEEENLSRLILILQGDITSKARDC 178
Query: 95 -----PSK----RITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDA 145
P K ++T+LLVNI+KH LKPKH+VLT +EK +LLKKY++E+ +LP ML+ DA
Sbjct: 179 IKEIFPFKVDIFQVTELLVNISKHELKPKHEVLTAEEKAELLKKYNLEDSRLPCMLENDA 238
Query: 146 IAQYYGLERGQVVKVTYSGEITESHVTYRCVW 177
+A+YYGL +G +VK+TY GE+T HVTYRC++
Sbjct: 239 VARYYGLGKGTIVKITYDGELTGHHVTYRCIF 270
>gi|359481904|ref|XP_003632689.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases I, II,
and III subunit RPABC1-like [Vitis vinifera]
Length = 207
Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 105/168 (62%), Gaps = 19/168 (11%)
Query: 28 LSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY-----GQDPDV 82
LS FVD GS +S RYYL+RRT+LEML+DRGY++ +I++ +Q F +++ D +
Sbjct: 41 LSSFVDEGSIESHRYYLARRTLLEMLRDRGYSIPALDIDIYLQ-FXSVFHLFVSSSDYSL 99
Query: 83 DRLRISISH------QSDPSKRITDLLVN---ITKHVLKPKHQVLTDQEKEKLLKKYSIE 133
L I + + + + I +VN ++K +L ++ + + K L + +E
Sbjct: 100 FXLHILVIFCGPDVVKVNAIRSIATQIVNKDSLSKLILVLQNHITSQALKAVDLFSFQVE 159
Query: 134 EKQ----LPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 177
Q LPRML++DAIA+YYGLE+GQVVKV Y+GEIT SHVTYRCVW
Sbjct: 160 MFQVSLDLPRMLQQDAIARYYGLEKGQVVKVIYNGEITGSHVTYRCVW 207
>gi|346703190|emb|CBX25289.1| hypothetical_protein [Oryza brachyantha]
Length = 288
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 114/228 (50%), Gaps = 62/228 (27%)
Query: 10 SMEMEGGNGYNGEPTESCLSGFVD-NGSRDSLRYYLSRRTVLEMLKD------------- 55
+ EME + P C++ VD +GS +S R +L+RRT LEML+D
Sbjct: 63 AAEMEIDDDLPEVP--DCIASMVDRSGSVESKRLFLARRTALEMLRDRGYSVPEEEIART 120
Query: 56 ----RGYAVALSEIN-------------------------LSVQDFRAIYGQDPDVDRLR 86
R + SEI + + R IY Q + R
Sbjct: 121 LPEFRAWWGEKSEIERLAFTTTLVSDPSKKVQIVFCPPEPVKIATIREIYRQTEGENLSR 180
Query: 87 ISISHQSDPSKR-----------------ITDLLVNITKHVLKPKHQVLTDQEKEKLLKK 129
+ + QS R +T+LLVNITKHVLKPKH+VL+ +K KLLK+
Sbjct: 181 LILILQSRILSRARESIKEIFKLKVDIFQVTELLVNITKHVLKPKHEVLSAAQKAKLLKQ 240
Query: 130 YSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 177
Y++E+ QLPRML+ D +A+YYGL++G VVKV Y E+T +HV YRCV+
Sbjct: 241 YNVEDSQLPRMLETDPVARYYGLDKGTVVKVIYDSELTGNHVAYRCVF 288
>gi|15232524|ref|NP_191013.1| RNA polymerase II fifth largest subunit, E [Arabidopsis thaliana]
gi|7258352|emb|CAB77569.1| RNA polymerase 24kDa subunit-like protein [Arabidopsis thaliana]
gi|332645717|gb|AEE79238.1| RNA polymerase II fifth largest subunit, E [Arabidopsis thaliana]
Length = 233
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 110/210 (52%), Gaps = 59/210 (28%)
Query: 26 SCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY--------- 76
+C+S D G +S R+YL+R T EML+DRGY V +E++L++ +FR+++
Sbjct: 23 NCISKTEDTGGIESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELERL 82
Query: 77 -------------------GQDP----DVDRLRISISHQ--------------------- 92
G +P V L I IS+
Sbjct: 83 RICVPLRSDPKKKILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKA 142
Query: 93 ------SDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAI 146
+ + I DLLVNITKH+ +PK ++L +EKE+LL+K+++E+KQLP + +KD+
Sbjct: 143 LTTFPFTVETFPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLPYLQEKDSF 202
Query: 147 AQYYGLERGQVVKVTYSGEITESHVTYRCV 176
+YYGL++ QVVK+TYS E VTYRC+
Sbjct: 203 VRYYGLKKKQVVKITYSKEPVGDFVTYRCI 232
>gi|255544029|ref|XP_002513077.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
gi|223548088|gb|EEF49580.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
Length = 239
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 72/86 (83%), Gaps = 4/86 (4%)
Query: 95 PSK----RITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYY 150
PSK I+DLLVNITKHVLKP+H+VLT ++K++LL K+S E+KQLPRML DAI++YY
Sbjct: 153 PSKVEIFHISDLLVNITKHVLKPRHEVLTAEQKQQLLNKFSSEDKQLPRMLVTDAISRYY 212
Query: 151 GLERGQVVKVTYSGEITESHVTYRCV 176
G E+GQVVK+TYSG + +S VTYRCV
Sbjct: 213 GFEKGQVVKITYSGGLVDSLVTYRCV 238
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 53/74 (71%)
Query: 27 CLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR 86
CL+ FV+ S +S RYYLSR+TV+EML+DRGY VA SE+ S +F + +G +PD+ +LR
Sbjct: 30 CLTKFVEQASLESQRYYLSRKTVMEMLRDRGYDVADSELTGSFTEFLSEFGDNPDILKLR 89
Query: 87 ISISHQSDPSKRIT 100
IS S S P K++
Sbjct: 90 ISASLHSHPDKKMV 103
>gi|356541565|ref|XP_003539245.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Glycine max]
Length = 214
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 53/79 (67%), Positives = 68/79 (86%)
Query: 98 RITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQV 157
RI DLLVNITKHVL+PK+++LTD EK+ LL K++++EKQLP MLK DAIA YYGLE+GQV
Sbjct: 135 RIDDLLVNITKHVLQPKYEILTDDEKKALLTKHNLDEKQLPHMLKTDAIASYYGLEKGQV 194
Query: 158 VKVTYSGEITESHVTYRCV 176
VK+T+ G + + HV+YRCV
Sbjct: 195 VKITHRGPVVDFHVSYRCV 213
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 53/75 (70%), Gaps = 2/75 (2%)
Query: 27 CLSGFV-DNGSRDSLRYYLSRRTVLEMLKDRGY-AVALSEINLSVQDFRAIYGQDPDVDR 84
C++ DNGS +SLRY+LSRRT+LEML+DRGY V + ++ S+ +FR+ +GQ+P+
Sbjct: 3 CIAKMTKDNGSMESLRYFLSRRTLLEMLQDRGYDVVQHANLSPSLAEFRSRFGQNPNPQT 62
Query: 85 LRISISHQSDPSKRI 99
L +SH S+PS +
Sbjct: 63 LAFCVSHLSNPSNTV 77
>gi|242069947|ref|XP_002450250.1| hypothetical protein SORBIDRAFT_05g002600 [Sorghum bicolor]
gi|241936093|gb|EES09238.1| hypothetical protein SORBIDRAFT_05g002600 [Sorghum bicolor]
Length = 263
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/80 (66%), Positives = 68/80 (85%)
Query: 98 RITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQV 157
+IT+LLVNITKH LKPKHQVLT +EK KLLK+Y++ + QLPRML+ DA+A+YYGL +G V
Sbjct: 184 QITELLVNITKHALKPKHQVLTAEEKAKLLKEYNVVDSQLPRMLENDAVARYYGLGKGTV 243
Query: 158 VKVTYSGEITESHVTYRCVW 177
VKV Y E+T +HVTYRC++
Sbjct: 244 VKVIYDSELTGNHVTYRCIF 263
>gi|108862173|gb|ABA96407.2| RNA polymerase Rpb5, N-terminal domain containing protein,
expressed [Oryza sativa Japonica Group]
Length = 335
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/78 (66%), Positives = 66/78 (84%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
TDLLVNITKHVLKPKH+VL+ +K KLLK+Y++E+ QLPRML+ DA+A+YYG ++G VVK
Sbjct: 258 TDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLETDAVARYYGFDKGTVVK 317
Query: 160 VTYSGEITESHVTYRCVW 177
VTY GE+T V YRCV+
Sbjct: 318 VTYDGELTGKRVAYRCVF 335
>gi|326520990|dbj|BAJ92858.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326531658|dbj|BAJ97833.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 251
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/80 (65%), Positives = 67/80 (83%)
Query: 98 RITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQV 157
+IT+LLVNITKHVLKP H+VLT +EK KLLK+Y++ + QLPRML+ DA+A+YYGL +G V
Sbjct: 172 QITELLVNITKHVLKPNHEVLTAEEKAKLLKEYNVVDSQLPRMLETDAVARYYGLGKGTV 231
Query: 158 VKVTYSGEITESHVTYRCVW 177
VK TY E+T HVTYRC++
Sbjct: 232 VKFTYDNELTVDHVTYRCIF 251
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 20 NGEPTESCLSGFVDNGSR---DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY 76
N C+S VD G +S R +L+RRT LEML+DRGY+V E+ ++ +FRA +
Sbjct: 32 NAPEVAGCISSMVDLGGAAGVESQRLFLARRTALEMLRDRGYSVPEDELARTLPEFRAWW 91
Query: 77 GQDPDVDRLRISISHQSDPSKRI 99
+ P+++RL S + SDPS ++
Sbjct: 92 SETPEIERLSFSTTLASDPSSKV 114
>gi|356506928|ref|XP_003522225.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Glycine max]
Length = 183
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/79 (64%), Positives = 67/79 (84%)
Query: 98 RITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQV 157
+I DLLVNITKHVL+PK+++LTD EK+ LL K++++EKQLP MLK D IA+YYGLE+GQV
Sbjct: 104 KIDDLLVNITKHVLQPKYEILTDDEKQALLTKHNLDEKQLPHMLKTDTIARYYGLEKGQV 163
Query: 158 VKVTYSGEITESHVTYRCV 176
VK+T+SG + V+YRCV
Sbjct: 164 VKITHSGPVVNFDVSYRCV 182
>gi|147776024|emb|CAN60800.1| hypothetical protein VITISV_022856 [Vitis vinifera]
Length = 162
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/79 (65%), Positives = 66/79 (83%)
Query: 98 RITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQV 157
+IT+LL+NITKHV PKH++L+ QEK KL+ KY +E+KQ P M K DAIA+YYGLE+GQV
Sbjct: 83 QITELLINITKHVSVPKHEILSAQEKRKLVNKYKLEDKQXPIMQKDDAIARYYGLEKGQV 142
Query: 158 VKVTYSGEITESHVTYRCV 176
VK+TY G +T+S VTYRCV
Sbjct: 143 VKITYKGGMTDSLVTYRCV 161
>gi|148910132|gb|ABR18148.1| unknown [Picea sitchensis]
Length = 194
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 93/180 (51%), Gaps = 49/180 (27%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRI------ 99
RRTVL+ML DR Y V EIN + + F +G+DP + L I+ + ++ PS++I
Sbjct: 14 RRTVLQMLNDRDYLVGDFEINTTKEQFLDKFGEDPKKEDLVINKAKRNSPSEQIFVFFPE 73
Query: 100 -------------------------------------------TDLLVNITKHVLKPKHQ 116
+LLVNI +HVL P+ Q
Sbjct: 74 EAKVGVKSIKTYVERMKSEGVFRAILVVQQEFSGKFHLEVFQEAELLVNIKEHVLVPEQQ 133
Query: 117 VLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 176
+LT +EK+ LL++Y+++E QLPRM + D +A+YYGL+RGQVVK+ E +VTYR V
Sbjct: 134 ILTPEEKKTLLERYTLKETQLPRMQESDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYV 193
>gi|168011548|ref|XP_001758465.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690500|gb|EDQ76867.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 208
Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 95/198 (47%), Gaps = 60/198 (30%)
Query: 39 SLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPD----------------- 81
S R Y R+TV+EML+DR Y VA E+ LS + FR YG +P
Sbjct: 10 SARLYRIRKTVMEMLRDRDYVVADYELTLSKEQFREKYGDEPKREDLVIQKPRRSNNAEH 69
Query: 82 -------------------VDRLRISISHQS--------DPSKRI--------------- 99
VDR++ H++ P R
Sbjct: 70 IFVFFPEEAKVGVKTIKTYVDRMKTENVHRAILVVQQNLTPFARQCVSEMASKYHLEVFQ 129
Query: 100 -TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVV 158
+LLVNI +HVL P H+VLT EK+ LL++Y+++E QLPRM + D +A+YYGL+RGQVV
Sbjct: 130 EAELLVNIKEHVLVPLHEVLTPDEKKTLLERYTVKETQLPRMQENDPVARYYGLKRGQVV 189
Query: 159 KVTYSGEITESHVTYRCV 176
K+ E +VTYR V
Sbjct: 190 KIIRPSETAGRYVTYRFV 207
>gi|297816744|ref|XP_002876255.1| eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297322093|gb|EFH52514.1| eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 223
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 111/226 (49%), Gaps = 69/226 (30%)
Query: 14 EGGNGYNGEPT----ESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSV 69
E G NGE T C+S D G DS R+YL+R T EML+DRGY V +E++L++
Sbjct: 3 EEGCCENGESTFKNGSHCISKTEDTGGIDSKRFYLARTTAFEMLRDRGYEVNEAELSLTL 62
Query: 70 QDFRAIYGQDPDVDRLRISISHQSDPSKRI-----------------------TDLLVNI 106
+FR+++G+ PD++RLRI + +SDP K+I ++ VN
Sbjct: 63 SEFRSVFGEKPDLERLRICVPLRSDPKKKILVVFMGTEPITVKSVRAIHSQISNNVGVNA 122
Query: 107 TKHVLKPK-----HQVLT----------------------DQEKEKLL---------KKY 130
+L+ K H+ LT Q K ++L +K+
Sbjct: 123 MILILQSKMNHFAHKELTTFPFTVETIPIGDLLVNIAKHIQQPKIEILNKEEKEQLLRKH 182
Query: 131 SIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 176
++E+KQ +D+ +YYGL++ QVVK+TYS E VTYRC+
Sbjct: 183 ALEDKQ------EDSFVRYYGLKKKQVVKITYSKEPIGDFVTYRCI 222
>gi|168003716|ref|XP_001754558.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694179|gb|EDQ80528.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 208
Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 94/196 (47%), Gaps = 60/196 (30%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPD------------------- 81
R Y R+TV+EML+DR Y VA E+N + ++FR YG +P
Sbjct: 12 RLYRIRKTVMEMLRDRDYVVAEFELNSTKEEFREKYGDEPKREDLVIQKPKRSNNAEHIF 71
Query: 82 -----------------VDRLRISISHQS--------DPSKRI----------------T 100
VDR++ H++ P R
Sbjct: 72 VFFPEEAKVGVKTIKTYVDRMKTENVHRAILVVQQNLTPFARQCVSEMSSKYHVEVFQEA 131
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNI HVL P+H+VL +EK LL++Y+++E QLPRM + D +A+YYGL+RGQVVK+
Sbjct: 132 ELLVNIKDHVLVPQHEVLNAEEKITLLQRYTVKETQLPRMQENDPVARYYGLKRGQVVKI 191
Query: 161 TYSGEITESHVTYRCV 176
E +VTYR V
Sbjct: 192 IRPSETAGRYVTYRFV 207
>gi|242082576|ref|XP_002441713.1| hypothetical protein SORBIDRAFT_08g001130 [Sorghum bicolor]
gi|241942406|gb|EES15551.1| hypothetical protein SORBIDRAFT_08g001130 [Sorghum bicolor]
Length = 274
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 67/100 (67%), Gaps = 4/100 (4%)
Query: 77 GQDPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 136
G +P + ++ SI D + LVNITKHVLKPKH+VLT +EK KL K Y++ +
Sbjct: 178 GPNPHIRAVKCSI----DLLFNVRSRLVNITKHVLKPKHEVLTVEEKVKLQKDYNVVDSH 233
Query: 137 LPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 176
LP ML+ DA+A Y G +G VVKVTY E+T +HVTYRC+
Sbjct: 234 LPLMLESDAVAHYQGFRQGTVVKVTYDNELTGNHVTYRCI 273
>gi|388498148|gb|AFK37140.1| unknown [Lotus japonicus]
Length = 150
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/55 (81%), Positives = 53/55 (96%)
Query: 98 RITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGL 152
+ITDLLVNITKHVLKPKHQVLTD++K+ LLKK++IEEKQLPRML+ DAIA+YYGL
Sbjct: 96 QITDLLVNITKHVLKPKHQVLTDRQKKNLLKKFNIEEKQLPRMLQSDAIARYYGL 150
>gi|389749829|gb|EIM91000.1| DNA-directed RNA polymerase RPB5 subunit [Stereum hirsutum FP-91666
SS1]
Length = 175
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 86/159 (54%), Gaps = 28/159 (17%)
Query: 47 RTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDP-DVDR--------LRISISHQSD--- 94
RT+ E++KDRGY VA EI++ + F + Y VDR LR++ D
Sbjct: 17 RTIQELVKDRGYQVADDEIHMDLSTFESHYANSAGSVDRNQLNFFTNLRVNPQIFKDIRS 76
Query: 95 ----------PSKRI------TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLP 138
PS R DLLV IT H L P+H VLT +EK+ +L++Y ++E QLP
Sbjct: 77 GVIIFPGIMTPSARKVEEFAEADLLVYITHHKLVPRHDVLTPEEKKMVLERYHLKETQLP 136
Query: 139 RMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 177
R+ D IA+YYGL RGQVVK+T E + + +YR +
Sbjct: 137 RIQPADPIARYYGLRRGQVVKITRPSETSGRYASYRICF 175
>gi|393242192|gb|EJD49711.1| DNA-directed RNA polymerase I [Auricularia delicata TFB-10046 SS5]
Length = 209
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 97/200 (48%), Gaps = 62/200 (31%)
Query: 40 LRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY-----------------GQDPD- 81
+R + RT+ EM++DRGY V+ E N+S++ FRA + +DP+
Sbjct: 10 VRLWKVSRTIHEMVRDRGYQVSEEETNMSLEQFRAQHTTNGTVNRTTLTFFTHHAKDPND 69
Query: 82 ----------------------------VDRLRISISHQSDPSKR--IT----------- 100
+ R I S PS R IT
Sbjct: 70 QLFVFFCEDKNVSIKTMRKFLDVLQQKGIQRGIIVFSGTMTPSARKVITGMSQDYKLEEF 129
Query: 101 ---DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQV 157
DL+VNIT+H+L PKH+V+T + K+ LL++Y ++E QLPR+ D +A+YYGL+RGQV
Sbjct: 130 AEADLIVNITQHILVPKHEVMTTEAKKALLERYRLKETQLPRIQLADPVARYYGLKRGQV 189
Query: 158 VKVTYSGEITESHVTYRCVW 177
VK+T E + + +YR +
Sbjct: 190 VKITRPSETSGRYASYRICF 209
>gi|440302517|gb|ELP94824.1| DNA-directed RNA polymerase I, II, and III subunit RPABC1, putative
[Entamoeba invadens IP1]
Length = 217
Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 58/77 (75%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+L+VN+TKHVL P+H LTD+EK+ +LKKY ++E QLPR+LK D IA+YYG ERG V+K+
Sbjct: 141 ELIVNVTKHVLVPEHIKLTDEEKQAVLKKYQVKESQLPRLLKSDPIAKYYGFERGDVIKI 200
Query: 161 TYSGEITESHVTYRCVW 177
E +VTYR V+
Sbjct: 201 IRKSETAGRYVTYRAVF 217
>gi|406605852|emb|CCH42738.1| DNA-directed RNA polymerase [Wickerhamomyces ciferrii]
Length = 215
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 87/157 (55%), Gaps = 3/157 (1%)
Query: 18 GYNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG 77
+ PT L F + GS L + + + + + +SE N SV F G
Sbjct: 59 SFQASPTSESLGQFPNMGS---LWVEFCDEASVGIKTMKNFVIHISEKNFSVGIFIYQNG 115
Query: 78 QDPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL 137
P ++L +++ + + +DL+VNIT H L PKH VL+D EK++LL++Y ++E QL
Sbjct: 116 ITPSANKLIPTVAPAVIETFQESDLIVNITHHELVPKHIVLSDDEKKELLERYRLKESQL 175
Query: 138 PRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
PR+ ++D +A+Y GL RGQVVK+ E + + +YR
Sbjct: 176 PRIQREDPVARYLGLRRGQVVKIIRRSETSGRYASYR 212
>gi|357497659|ref|XP_003619118.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|355494133|gb|AES75336.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 205
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 93/195 (47%), Gaps = 59/195 (30%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPS---- 96
+ Y RRTV +ML+DR Y V SE+N+S Q+ +A +G++ + L I +++ DPS
Sbjct: 10 KLYRIRRTVFQMLRDRNYRVLDSEVNMSKQELKAKFGENMNRKDLTIQTTNKDDPSDKIY 69
Query: 97 --------------KRITDLLVN--------ITKHVLKPK-------------------- 114
K I DL++ + ++ LK K
Sbjct: 70 VFFRDDAKLGVSTIKTIKDLILTEGVYRAIIVVQNELKSKARSELNLFSEVRIEAFLEDE 129
Query: 115 -------------HQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVT 161
HQVLT+ EK+ LL Y+++E QLPRML D +A+YYGL+RGQV ++
Sbjct: 130 LLVNVIEHVLVPEHQVLTNAEKKDLLSTYTVKETQLPRMLVTDPVAKYYGLKRGQVCRII 189
Query: 162 YSGEITESHVTYRCV 176
E +VTYR V
Sbjct: 190 RHSETAGIYVTYRIV 204
>gi|336370755|gb|EGN99095.1| hypothetical protein SERLA73DRAFT_181909 [Serpula lacrymans var.
lacrymans S7.3]
gi|336383518|gb|EGO24667.1| hypothetical protein SERLADRAFT_468322 [Serpula lacrymans var.
lacrymans S7.9]
Length = 206
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 89/170 (52%), Gaps = 24/170 (14%)
Query: 29 SGFVDNGS---RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG--QDPDVD 83
S + +NG R+ L ++ + RT D+ + E ++ V+ R + G ++ +
Sbjct: 40 SHYANNGGSVDRNQLNFFTNSRT---NPTDQIFVFFSDEKSVGVKTMRKLLGILEEKSIQ 96
Query: 84 RLRISISHQSDPSKRI----------------TDLLVNITKHVLKPKHQVLTDQEKEKLL 127
R I PS R +DLLVNIT H L PKH+VLT +EK+ LL
Sbjct: 97 RGIIVFPGNMTPSARKVIAAMAAQYRLEEFSESDLLVNITHHTLVPKHEVLTPEEKKTLL 156
Query: 128 KKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 177
+KY ++E QLPR+ D +A+YYGL RGQVVK+T E + + +YR +
Sbjct: 157 EKYRLKETQLPRIQLADPVARYYGLRRGQVVKITRPSETSGRYASYRICF 206
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 47 RTVLEMLKDRGYAVALSEINLSVQDFRAIY---GQDPDVDRLRISISHQSDPSKRI 99
RT+ E++KDRG+AV+ EI++ + FR+ Y G D ++L + +++P+ +I
Sbjct: 13 RTIHELVKDRGFAVSDDEIHMDLVTFRSHYANNGGSVDRNQLNFFTNSRTNPTDQI 68
>gi|192910670|gb|ACF06443.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Elaeis
guineensis]
Length = 204
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 59/77 (76%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
T+LLVNI +HVL P+HQVLT +EK+ LL++Y+++E QLPR+ D IA+YYGL+RGQVVK
Sbjct: 127 TELLVNIKEHVLVPEHQVLTSEEKKTLLERYTLKETQLPRIQVTDPIARYYGLKRGQVVK 186
Query: 160 VTYSGEITESHVTYRCV 176
+ E +VTYR V
Sbjct: 187 IIRPSETAGRYVTYRYV 203
>gi|328770744|gb|EGF80785.1| hypothetical protein BATDEDRAFT_88106 [Batrachochytrium
dendrobatidis JAM81]
Length = 207
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 87/193 (45%), Gaps = 62/193 (32%)
Query: 47 RTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR--LRISISHQSD---------- 94
RT+ EM+ RGY V+ +E+ +S+ DFR Y + +DR L + H S
Sbjct: 15 RTIHEMVSHRGYLVSKAELEMSLDDFRYTYTKGGIIDRQGLTFLVQHSSSENDQLLVFFT 74
Query: 95 --------PSKRITD------------------------------------------LLV 104
P K+I + LLV
Sbjct: 75 DDDSVGIKPIKKICERMISQSIMKGILIYKKSLTPSANKVVQEMAPKYQLELFQESELLV 134
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 164
NIT+H L P H+VLT EK+ LL +Y ++E QLPR+ D +A+YYGL+RGQVVK+
Sbjct: 135 NITQHTLVPVHEVLTVDEKKTLLARYRLKETQLPRIQPSDPVARYYGLKRGQVVKIIRPS 194
Query: 165 EITESHVTYRCVW 177
E +VTYR +
Sbjct: 195 ETAGKYVTYRFCF 207
>gi|393221284|gb|EJD06769.1| RPB5 subunit of DNA-directed RNA polymerase [Fomitiporia
mediterranea MF3/22]
Length = 212
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 93/207 (44%), Gaps = 65/207 (31%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQ------------------DFRAIY 76
G ++ R + RT+ E++KDRG+ V+ EI + + +F A +
Sbjct: 7 GPDEAARLWRVNRTIHELIKDRGFQVSDEEIEVDLVTFKQQFANSSGSVDRNQLNFFATH 66
Query: 77 GQDPDVDRLRISISHQSD------------------------------PSKRI------- 99
DP D + I S Q PS R
Sbjct: 67 ESDPS-DHIFIYFSDQKSVGIKTMQKVCIILEEKSINKGIVIFPGTMTPSARKFIVQMSV 125
Query: 100 ---------TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYY 150
+DLLVNIT+H+L P H+VLT +EK+ LL+KY ++E QLPR+ D +A+YY
Sbjct: 126 RYRLEEFSESDLLVNITRHILVPHHEVLTPEEKDTLLEKYRLKETQLPRIQLADPVARYY 185
Query: 151 GLERGQVVKVTYSGEITESHVTYRCVW 177
GL RGQVVK+T E + +YR +
Sbjct: 186 GLRRGQVVKITRPSETAGRYASYRICF 212
>gi|346470667|gb|AEO35178.1| hypothetical protein [Amblyomma maculatum]
Length = 205
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/76 (57%), Positives = 59/76 (77%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNI KHVL P+HQVLT++EK+ LL++Y+++E QLPR+ D IA+YYGL+RGQVVK+
Sbjct: 129 ELLVNIKKHVLIPEHQVLTNEEKKTLLERYTLKETQLPRIQITDPIARYYGLKRGQVVKI 188
Query: 161 TYSGEITESHVTYRCV 176
E +VTYR V
Sbjct: 189 IRPSETAGRYVTYRYV 204
>gi|255546411|ref|XP_002514265.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
gi|223546721|gb|EEF48219.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
Length = 225
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 60/77 (77%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++LLVNI +HVL P+HQVLT++EK+ LL++Y+++E QLPR+ D IA+YYGL+RGQVVK
Sbjct: 148 SELLVNIKEHVLVPEHQVLTNEEKKTLLERYTVKETQLPRIQISDPIARYYGLKRGQVVK 207
Query: 160 VTYSGEITESHVTYRCV 176
+ E +VTYR V
Sbjct: 208 IIRPSETAGRYVTYRYV 224
Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD 79
R + RRTV++MLKDR Y V SEIN++ F + YG +
Sbjct: 10 RLFRIRRTVMQMLKDRTYLVTDSEINITKHQFTSKYGDN 48
>gi|390594286|gb|EIN03698.1| DNA-directed RNA polymerase RPB5 subunit [Punctularia
strigosozonata HHB-11173 SS5]
Length = 208
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 55/78 (70%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+DLLVNIT H L P+H+VLT +EK LL+KY ++E QLPR+ D +A+YYGL RGQVVK
Sbjct: 131 SDLLVNITHHTLVPRHEVLTPEEKRNLLEKYRLKETQLPRIQLADPVARYYGLRRGQVVK 190
Query: 160 VTYSGEITESHVTYRCVW 177
+T E + +YR +
Sbjct: 191 ITRPSETAGRYASYRICF 208
Score = 35.8 bits (81), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY---GQDPDVDRLRISISHQSD 94
+S + + RT+ E++KDRG+ V+ EI + + FR Y G D ++L + +++
Sbjct: 6 ESAKLWKVNRTIHELVKDRGFQVSDDEIQMDLATFRQAYANNGGSVDRNQLNFFTNSRAN 65
Query: 95 PSKRI 99
P+ +I
Sbjct: 66 PADQI 70
>gi|357500693|ref|XP_003620635.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|355495650|gb|AES76853.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 239
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 56/74 (75%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNITKH P HQVLTD EK+ LLK+Y++++ QLP++L D +A+YYGL RGQVV++
Sbjct: 163 ELLVNITKHERVPPHQVLTDTEKKALLKRYTVKDTQLPKILTNDPVARYYGLRRGQVVRI 222
Query: 161 TYSGEITESHVTYR 174
E +++TYR
Sbjct: 223 IRPSETAGTYITYR 236
Score = 42.0 bits (97), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 40/62 (64%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSK 97
D + Y R+T+L+ML DR Y V +++ +S +DF +G+ ++L I+ +H+++ S+
Sbjct: 7 DITKLYRIRKTILQMLFDRNYLVDETQLTMSREDFIFKFGEHMKREQLEINTTHRNNLSE 66
Query: 98 RI 99
+I
Sbjct: 67 KI 68
>gi|449019061|dbj|BAM82463.1| RNA polymerase I, II, III common subunit [Cyanidioschyzon merolae
strain 10D]
Length = 211
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 60/76 (78%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNIT+H L PKH+VLT ++K+ LLK+Y +++ QLPR+L+ D +A+Y+G+ RGQV+K+
Sbjct: 135 ELLVNITRHQLVPKHEVLTAEQKKTLLKRYQLKDTQLPRILQSDPVARYFGVTRGQVLKI 194
Query: 161 TYSGEITESHVTYRCV 176
T + E +VTYR V
Sbjct: 195 TRNSETAGRYVTYRLV 210
>gi|449450868|ref|XP_004143184.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
gi|449524595|ref|XP_004169307.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
Length = 207
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 57/77 (74%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
T+LLVNI +HVL P+HQ LTD+EK+ LL +Y+++E QLPRM D I++YYGL+RG VVK
Sbjct: 130 TELLVNIKEHVLIPEHQTLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYYGLKRGHVVK 189
Query: 160 VTYSGEITESHVTYRCV 176
+ E +VTYR V
Sbjct: 190 IIRPSETAGRYVTYRYV 206
Score = 39.7 bits (91), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 38/59 (64%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRI 99
+ + R+TVL+MLKDRGY V E+++S F+ +G++ + L I+ S +++ S +I
Sbjct: 10 KLFRVRKTVLQMLKDRGYFVGDFELDMSKVQFKNKFGENMKREDLVINKSKRNNSSDQI 68
>gi|357500691|ref|XP_003620634.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|355495649|gb|AES76852.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 208
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 55/74 (74%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNITKH P HQVLT+ EK LLKKY++++ QLPR+L D +A+YYGL RGQVV++
Sbjct: 132 ELLVNITKHERVPPHQVLTEAEKRALLKKYTVKDTQLPRILTSDPVARYYGLRRGQVVRI 191
Query: 161 TYSGEITESHVTYR 174
E +++TYR
Sbjct: 192 IRPSETAGTYITYR 205
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 41/62 (66%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSK 97
D + + ++T+L+ML DR Y V +E+ +S +DF YG+ ++L I+ +H+++PS+
Sbjct: 7 DITKLFRIQKTLLQMLSDRNYLVEETELTMSREDFIFKYGEHMKREQLEINKTHRNNPSE 66
Query: 98 RI 99
+I
Sbjct: 67 KI 68
>gi|354545760|emb|CCE42488.1| hypothetical protein CPAR2_201310 [Candida parapsilosis]
Length = 214
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 85/156 (54%), Gaps = 3/156 (1%)
Query: 19 YNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQ 78
+ PT L F D GS L + + R + + +SE N SV F G
Sbjct: 59 FQATPTAEQLDKFPDMGS---LWVEFCDEASVGIKTMRNFCIHISEKNFSVGIFIYQNGI 115
Query: 79 DPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLP 138
P ++L ++ + + + DL+VNIT H L PKH L+ EK++LL++Y ++E QLP
Sbjct: 116 TPSANKLIPTVQPATIETFQENDLIVNITHHELVPKHIKLSRDEKKELLERYRLKESQLP 175
Query: 139 RMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
R+ ++D +A+Y GL+RG+VVK+ E + + +YR
Sbjct: 176 RIQREDPVARYLGLKRGEVVKIIRRSETSGRYASYR 211
Score = 38.9 bits (89), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 30/43 (69%)
Query: 32 VDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRA 74
+D+ R R + + +TV EM+KDRGY ++ E++++++ FRA
Sbjct: 1 MDDNDRAISRLFRTYKTVKEMVKDRGYYISQEELDMTLEQFRA 43
>gi|392594893|gb|EIW84217.1| RPB5 subunit of DNA-directed RNA polymerase [Coniophora puteana
RWD-64-598 SS2]
Length = 207
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 58/78 (74%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+DLLVNIT H+L PKH+VLT ++K+ LL+KY +++ QLPR+ D +A+YYGL RGQVVK
Sbjct: 130 SDLLVNITHHILVPKHEVLTPEQKKALLEKYRLKDTQLPRIQLADPVARYYGLRRGQVVK 189
Query: 160 VTYSGEITESHVTYRCVW 177
+T E + + +YR +
Sbjct: 190 ITRPSETSGRYASYRICF 207
Score = 37.0 bits (84), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 47 RTVLEMLKDRGYAVALSEINLSVQDFRAIY---GQDPDVDRLRISISHQSDPSKRI 99
RTV E++KDRGY V+ EI++ F++ Y G D ++L + Q +P+++I
Sbjct: 14 RTVHELVKDRGYQVSDDEIHMDFATFKSHYANNGGSVDRNQLNFFTNSQENPTEQI 69
>gi|399949804|gb|AFP65461.1| RNA polymerase I, II and III 24.3 kDa subunit [Chroomonas
mesostigmatica CCMP1168]
Length = 216
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 60/75 (80%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++L++NIT+H L PKH++++ +EK+ LLK+YSI+E QLPR+ KKD IA+YYGL + Q++K
Sbjct: 138 SELIINITEHCLVPKHEIISLEEKKSLLKRYSIKENQLPRINKKDPIARYYGLHKNQIIK 197
Query: 160 VTYSGEITESHVTYR 174
+T S E ++T+R
Sbjct: 198 ITRSSEPAGKYITFR 212
>gi|405118149|gb|AFR92924.1| DNA-directed RNA polymerase II 24 kda polypeptide [Cryptococcus
neoformans var. grubii H99]
Length = 255
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 56/75 (74%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+DLLVNITKH L PKH V+ +EK L+K+Y ++E QLPR++ D +A+YYGL+RGQV+K
Sbjct: 178 SDLLVNITKHFLVPKHTVMKPEEKSALIKRYRLKETQLPRIMITDPVAKYYGLKRGQVMK 237
Query: 160 VTYSGEITESHVTYR 174
+ + E ++TYR
Sbjct: 238 IERASETAGRYITYR 252
>gi|440803359|gb|ELR24265.1| RNA polymerase Rpb5, Cterminal domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 204
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 62/91 (68%), Gaps = 5/91 (5%)
Query: 86 RISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDA 145
R +I H + +LLVNIT+H+L PKH++LT+ EK+ LL KY +E+ QLPR+ D
Sbjct: 118 RYTIEHFQE-----AELLVNITEHILVPKHKLLTELEKQTLLAKYKLEDSQLPRIQVNDP 172
Query: 146 IAQYYGLERGQVVKVTYSGEITESHVTYRCV 176
+A+YYGL++GQVVK+ E +VTYR V
Sbjct: 173 VARYYGLQKGQVVKIIRPSETAGRYVTYRLV 203
>gi|58259413|ref|XP_567119.1| DNA-directed RNA polymerases ii 24 kda polypeptide [Cryptococcus
neoformans var. neoformans JEC21]
gi|134107497|ref|XP_777633.1| hypothetical protein CNBA7540 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260327|gb|EAL22986.1| hypothetical protein CNBA7540 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223256|gb|AAW41300.1| DNA-directed RNA polymerases ii 24 kda polypeptide, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 221
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 56/75 (74%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+DLLVNITKH L PKH V+ +EK L+K+Y ++E QLPR++ D +A+YYGL+RGQV+K
Sbjct: 144 SDLLVNITKHFLVPKHTVMKPEEKSALIKRYRLKETQLPRIMITDPVAKYYGLKRGQVMK 203
Query: 160 VTYSGEITESHVTYR 174
+ + E ++TYR
Sbjct: 204 IERASETAGRYITYR 218
>gi|357480733|ref|XP_003610652.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|355511987|gb|AES93610.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 410
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 57/77 (74%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+LLVNI +HVL P+HQ+L D EK+ LL++Y+++E QLPR+ D +A+YYGL+RGQVVK
Sbjct: 333 AELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVK 392
Query: 160 VTYSGEITESHVTYRCV 176
+ E +VTYR V
Sbjct: 393 IIRPSETAGRYVTYRFV 409
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 8/78 (10%)
Query: 30 GFVDNGSRDSL--------RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPD 81
F D ++ ++ R Y R+TV++MLKDR Y V E+N+S DF+ YG++
Sbjct: 195 AFCDTTTKKTMVFSEEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENMK 254
Query: 82 VDRLRISISHQSDPSKRI 99
+ L I+ + + PS +I
Sbjct: 255 REDLVINKTKKDKPSDQI 272
>gi|224119828|ref|XP_002331171.1| predicted protein [Populus trichocarpa]
gi|222873254|gb|EEF10385.1| predicted protein [Populus trichocarpa]
Length = 206
Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 59/76 (77%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNI +HVL P+HQVL+++EK+ LL++Y+++E QLPR+ D IA+YYGL+RGQVVK+
Sbjct: 130 ELLVNIKEHVLVPEHQVLSNEEKKTLLERYTVKETQLPRIQITDPIARYYGLKRGQVVKI 189
Query: 161 TYSGEITESHVTYRCV 176
E +VTYR V
Sbjct: 190 IRPSETAGRYVTYRYV 205
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 35/54 (64%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRI 99
R+TV++MLKDRGY V EI ++ + F + YG + + L I+ + ++D S +I
Sbjct: 15 RKTVMQMLKDRGYFVGDFEIKMTREQFESKYGNNMKREDLVINKTKRNDSSDQI 68
>gi|358054002|dbj|GAA99801.1| hypothetical protein E5Q_06504 [Mixia osmundae IAM 14324]
Length = 298
Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 67/103 (65%), Gaps = 3/103 (2%)
Query: 75 IYGQD---PDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYS 131
IY Q P + L + H + + ++LLVNIT+H L PKH+VL+ +K +LLKKY
Sbjct: 111 IYKQSITPPALRALAQAGQHTTAEALSESELLVNITQHTLVPKHEVLSPMDKAELLKKYR 170
Query: 132 IEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
+++ QLPR+L D +A+YYGL+RGQVVK+T E + +YR
Sbjct: 171 LKDTQLPRILLSDPVARYYGLKRGQVVKITRPSETAGRYASYR 213
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR 84
D+ RD R + RTV E+ +DRGY ++ EIN+S+Q F Y + +DR
Sbjct: 3 DDTERDIARVWRVNRTVRELCRDRGYTMSEQEINMSLQKFTESYTMNGHLDR 54
>gi|412988339|emb|CCO17675.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Bathycoccus prasinos]
Length = 205
Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 57/78 (73%), Gaps = 1/78 (1%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
T+LLVNIT H+L PKH +LTD+EK+ LL++Y + E QLPR+ D +A+YYG+ RGQVV+
Sbjct: 128 TELLVNITDHILVPKHVLLTDEEKKTLLERYKVRETQLPRIQLHDPVARYYGMRRGQVVR 187
Query: 160 VTYSGEITESHVTYR-CV 176
+ E +VTYR CV
Sbjct: 188 IIRPSETAGRYVTYRLCV 205
>gi|167379694|ref|XP_001735242.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Entamoeba dispar SAW760]
gi|165902841|gb|EDR28561.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1,
putative [Entamoeba dispar SAW760]
Length = 204
Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 92/197 (46%), Gaps = 62/197 (31%)
Query: 43 YLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY---GQDPDVDRLRISISHQSDPSKRI 99
Y + +TVLEML+DRGY + + N +++ F+ + G+ D L I + ++D + I
Sbjct: 8 YRAWKTVLEMLRDRGYITSEEDHNTTLEGFKERFYKGGEGVDHKELTIKVVKENDATDGI 67
Query: 100 -----------TDLL--------------------------------------------- 103
TD+L
Sbjct: 68 IVFFAEGVSLKTDVLGKYLTEVESEHVKRAIIVYRGKLSSPVKQMMEQPREVKWEALLED 127
Query: 104 ---VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
VN+T HVL P+H +L+ +EK++LLKKY ++E QLPR+L D I++YYG +RG VVK+
Sbjct: 128 ELIVNVTHHVLVPQHILLSPEEKQELLKKYQVKESQLPRLLTSDPISKYYGFQRGDVVKI 187
Query: 161 TYSGEITESHVTYRCVW 177
E +VTYR V+
Sbjct: 188 IRKSETAGRYVTYRAVF 204
>gi|225445170|ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 1 [Vitis vinifera]
gi|225445172|ref|XP_002284110.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 2 [Vitis vinifera]
Length = 206
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 58/76 (76%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNI +HVL P+HQVLT +EK+ LL++Y+++E QLPR+ D IA+Y+GL+RGQVVK+
Sbjct: 130 ELLVNIKEHVLVPEHQVLTSEEKKTLLERYTVKETQLPRIQVSDPIARYFGLKRGQVVKI 189
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 190 IRPSETAGRYITYRYV 205
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRI 99
R + R+TV++MLKDRGY V EIN++ F + +G++ + L I+ + ++D S +I
Sbjct: 10 RLFRIRKTVMQMLKDRGYFVGDFEINMTKHQFVSKFGENMKREDLVINKAKRTDSSDQI 68
>gi|350018416|dbj|GAA37368.1| DNA-directed RNA polymerases I II and III subunit RPABC1
[Clonorchis sinensis]
Length = 206
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 58/77 (75%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
T+L+VNIT+H L P+H VLT +EK++LL++Y ++E QLP+M D +A+YYGL RGQVV+
Sbjct: 129 TELMVNITEHQLVPQHNVLTQEEKKELLERYRLKESQLPKMQASDPVARYYGLRRGQVVR 188
Query: 160 VTYSGEITESHVTYRCV 176
+T E ++TYR V
Sbjct: 189 ITRPSETAGRYITYRIV 205
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPS 96
R+T+L+M KDRGY V E+ ++ DF+ G P L + ++H+ DP+
Sbjct: 14 RKTILKMCKDRGYLVMPKELEQTLDDFKLSVGDPPSRKDLLMVVNHEEDPA 64
>gi|388506474|gb|AFK41303.1| unknown [Medicago truncatula]
Length = 206
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 57/76 (75%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNI +HVL P+HQ+L D EK+ LL++Y+++E QLPR+ D +A+YYGL+RGQVVK+
Sbjct: 130 ELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKI 189
Query: 161 TYSGEITESHVTYRCV 176
E +VTYR V
Sbjct: 190 IRPSETAGRYVTYRLV 205
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRI 99
R Y R+TV++MLKDR Y V E+N+S DF+ YG++ + L I+ + + PS +I
Sbjct: 10 RLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENMKREDLVINKTKKDKPSDQI 68
>gi|351723363|ref|NP_001238044.1| uncharacterized protein LOC100499667 [Glycine max]
gi|255625665|gb|ACU13177.1| unknown [Glycine max]
Length = 206
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 57/76 (75%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNI +H L P+HQVLTD EK+ LL++Y+++E QLPR+ D +A+YYGL+RGQVVK+
Sbjct: 130 ELLVNIKEHELVPEHQVLTDAEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKI 189
Query: 161 TYSGEITESHVTYRCV 176
E +VTYR V
Sbjct: 190 IRPSETAGRYVTYRFV 205
Score = 43.1 bits (100), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRI 99
R Y R+TV++ML+DRG+ V EIN+S +F++ YG+ + L I+ S + + +I
Sbjct: 10 RLYRIRKTVMQMLRDRGFLVGDFEINMSKHEFKSKYGEHMKREDLVINKSKKDNSGDQI 68
>gi|297738790|emb|CBI28035.3| unnamed protein product [Vitis vinifera]
Length = 186
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 58/76 (76%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNI +HVL P+HQVLT +EK+ LL++Y+++E QLPR+ D IA+Y+GL+RGQVVK+
Sbjct: 110 ELLVNIKEHVLVPEHQVLTSEEKKTLLERYTVKETQLPRIQVSDPIARYFGLKRGQVVKI 169
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 170 IRPSETAGRYITYRYV 185
>gi|351722355|ref|NP_001237497.1| uncharacterized protein LOC100306098 [Glycine max]
gi|255627545|gb|ACU14117.1| unknown [Glycine max]
Length = 206
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 57/76 (75%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNI +H L P+HQVLTD EK+ LL++Y+++E QLPR+ D +A+YYGL+RGQVVK+
Sbjct: 130 ELLVNIKEHELVPEHQVLTDAEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKI 189
Query: 161 TYSGEITESHVTYRCV 176
E +VTYR V
Sbjct: 190 IRPSETAGRYVTYRFV 205
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRI 99
R Y R+TV++ML+DR + V EIN+S +F++ YG+ + L I+ S + + +I
Sbjct: 10 RLYRIRKTVMQMLRDRNFLVGDFEINMSKHEFKSKYGEHMKREDLVINKSKKDNSGDQI 68
>gi|226530454|ref|NP_001141164.1| uncharacterized protein LOC100273250 [Zea mays]
gi|226533456|ref|NP_001152590.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Zea mays]
gi|194703030|gb|ACF85599.1| unknown [Zea mays]
gi|195657875|gb|ACG48405.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Zea mays]
gi|413952167|gb|AFW84816.1| DNA-directed RNA polymerase II polypeptide [Zea mays]
Length = 210
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 58/77 (75%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++L+NI +HVL P+HQVLT++EK+ LL++Y+++E QLPR+ D IA+YYGL RGQVVK
Sbjct: 133 AEMLINIKEHVLVPEHQVLTNEEKKTLLERYTLKETQLPRIQITDPIARYYGLRRGQVVK 192
Query: 160 VTYSGEITESHVTYRCV 176
+ E +VTYR V
Sbjct: 193 IIRPSETAGRYVTYRYV 209
>gi|146418140|ref|XP_001485036.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Meyerozyma
guilliermondii ATCC 6260]
gi|146390509|gb|EDK38667.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Meyerozyma
guilliermondii ATCC 6260]
Length = 179
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 3/156 (1%)
Query: 19 YNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQ 78
+ PT L F D GS L + + R + + +SE N S F
Sbjct: 24 FQANPTAEALEKFPDMGS---LWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQNSI 80
Query: 79 DPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLP 138
P ++L +++ S + + +DL+VNIT H L PKH L+ EK++LL +Y ++E QLP
Sbjct: 81 TPSANKLVPTVAPASIETFQESDLIVNITHHDLVPKHIKLSIGEKKELLARYRLKESQLP 140
Query: 139 RMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
R+ ++D +A+Y GL+RG+VVK+ E + + +YR
Sbjct: 141 RIQREDPVARYLGLKRGEVVKIIRRSETSGRYASYR 176
>gi|310792261|gb|EFQ27788.1| RNA polymerase Rpb5 domain-containing protein [Glomerella
graminicola M1.001]
Length = 230
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 58/77 (75%), Gaps = 1/77 (1%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNITKH L PKH +L+ +EK LLK+Y ++E QLPR+L+KD +A+Y GL+RGQVVK+
Sbjct: 154 DLLVNITKHELVPKHILLSREEKIALLKRYRLKETQLPRILQKDPVAKYLGLKRGQVVKI 213
Query: 161 TYSGEITESHVTYR-CV 176
+ E + +YR CV
Sbjct: 214 IRTSETAGRYASYRLCV 230
>gi|308803436|ref|XP_003079031.1| RNA polymerase I, II and III 24.3 kDa subunit (ISS) [Ostreococcus
tauri]
gi|116057485|emb|CAL51912.1| RNA polymerase I, II and III 24.3 kDa subunit (ISS) [Ostreococcus
tauri]
Length = 1124
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 57/198 (28%), Positives = 88/198 (44%), Gaps = 62/198 (31%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRL--------------- 85
R + R+T+ +ML RGY V+ E+ F +G++P D L
Sbjct: 927 RLFRVRKTIHKMLAARGYLVSARELERDADSFAEEFGEEPKRDSLTILAPRKDDPSENIF 986
Query: 86 -------RISISHQSDPSKRI--------------------------------------- 99
++ + D +KR+
Sbjct: 987 VFFPDEEKVGVKTIKDLAKRMKEENVFRAIIVVQASLTPFAKQSLLECQTQKFYIEQFQE 1046
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
T+LLVNI HVL P+H +L+D++K LL++Y +++ QLPR+ D IA+YYG+ RGQVV+
Sbjct: 1047 TELLVNIVDHVLVPEHILLSDEQKRTLLERYKVKDTQLPRIQMHDPIARYYGMRRGQVVR 1106
Query: 160 VTYSGEITESHVTYR-CV 176
+ E +VTYR CV
Sbjct: 1107 IIRPSETAGRYVTYRLCV 1124
>gi|448525471|ref|XP_003869121.1| Rpb5 protein [Candida orthopsilosis Co 90-125]
gi|380353474|emb|CCG22984.1| Rpb5 protein [Candida orthopsilosis]
Length = 214
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 3/156 (1%)
Query: 19 YNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQ 78
+ P L F D GS L + + R + + +SE N SV F G
Sbjct: 59 FQATPNAEQLEKFPDMGS---LWVEFCDEASVGIKTMRNFCIHISEKNFSVGIFIYQNGI 115
Query: 79 DPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLP 138
P ++L ++ + + + DL+VNIT H L PKH L+ EK++LL++Y ++E QLP
Sbjct: 116 TPSANKLIPTVQPATIETFQENDLIVNITHHELVPKHIKLSRDEKKELLERYRLKESQLP 175
Query: 139 RMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
R+ ++D +A+Y GL+RG+VVK+ E + + +YR
Sbjct: 176 RIQREDPVARYLGLKRGEVVKIIRRSETSGRYASYR 211
Score = 37.0 bits (84), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 29/43 (67%)
Query: 32 VDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRA 74
+D+ R R + + +TV EM+KDRGY ++ E+ ++++ FR+
Sbjct: 1 MDDNDRAISRLFRTYKTVKEMVKDRGYYISQEELEMTLEQFRS 43
>gi|15228724|ref|NP_188871.1| DNA-directed RNA polymerase II subunit E [Arabidopsis thaliana]
gi|13899113|gb|AAK48978.1|AF370551_1 RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis
thaliana]
gi|15724322|gb|AAL06554.1|AF412101_1 AT3g22320/MCB17_5 [Arabidopsis thaliana]
gi|3372233|gb|AAC28253.1| RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis
thaliana]
gi|9293866|dbj|BAB01769.1| RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis
thaliana]
gi|21554280|gb|AAM63355.1| RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis
thaliana]
gi|25083949|gb|AAN72141.1| RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis
thaliana]
gi|332643100|gb|AEE76621.1| DNA-directed RNA polymerase II subunit E [Arabidopsis thaliana]
Length = 205
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 58/76 (76%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
++LVNI +HVL P+HQVLT +EK+ LL++Y+++E QLPR+ D IA+Y+GL+RGQVVK+
Sbjct: 129 EMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVVKI 188
Query: 161 TYSGEITESHVTYRCV 176
E +VTYR V
Sbjct: 189 IRPSETAGRYVTYRYV 204
Score = 35.4 bits (80), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 24/32 (75%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDF 72
R Y ++T+++ML+DRGY +A SE+ ++ Q F
Sbjct: 9 RLYRIQKTLMQMLRDRGYFIADSELTMTKQQF 40
>gi|409048291|gb|EKM57769.1| hypothetical protein PHACADRAFT_251606 [Phanerochaete carnosa
HHB-10118-sp]
Length = 208
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 55/78 (70%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
DLLVNIT H L P+H VLT ++K+ LL+KY ++E QLPR+ D +A+YYGL RGQVVK
Sbjct: 131 ADLLVNITHHTLVPRHDVLTPEQKKNLLEKYRLKETQLPRIQLADPVARYYGLRRGQVVK 190
Query: 160 VTYSGEITESHVTYRCVW 177
+T E + + +YR +
Sbjct: 191 ITRPSETSGRYASYRICF 208
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 47 RTVLEMLKDRGYAVALSEINLSVQDFRAIYG-QDPDVDR--LRISISHQSDPSKRI 99
RT+ E+++DRG+ V+ EI++ + FR++Y Q VDR L +HQ++P ++I
Sbjct: 15 RTIHELVRDRGFQVSDDEIHMDLATFRSLYANQMGSVDRSQLNFFTNHQNNPMEQI 70
>gi|297835232|ref|XP_002885498.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrata]
gi|297331338|gb|EFH61757.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrata]
Length = 205
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 58/76 (76%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
++LVNI +HVL P+HQVLT +EK+ LL++Y+++E QLPR+ D IA+Y+GL+RGQVVK+
Sbjct: 129 EMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVVKI 188
Query: 161 TYSGEITESHVTYRCV 176
E +VTYR V
Sbjct: 189 IRPSETAGRYVTYRYV 204
Score = 36.6 bits (83), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRISISHQSD 94
R Y ++T+++MLKDRGY +A SE+ ++ Q F +G + D+ L++ + SD
Sbjct: 9 RLYRIQKTLMQMLKDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKVKRNDNSD 65
>gi|384497437|gb|EIE87928.1| hypothetical protein RO3G_12639 [Rhizopus delemar RA 99-880]
Length = 188
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNIT HVL PKH+VLT +EK LL++Y ++E QLPR+ D +A+YYGL+RGQVVK+
Sbjct: 112 ELLVNITHHVLVPKHEVLTAEEKSTLLQRYRLKETQLPRIQHTDPVARYYGLKRGQVVKI 171
Query: 161 TYSGEITESHVTYR-CV 176
E +V+YR C+
Sbjct: 172 LRESETAGRYVSYRLCI 188
>gi|194693176|gb|ACF80672.1| unknown [Zea mays]
Length = 127
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 58/76 (76%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
++L+NI +HVL P+HQVLT++EK+ LL++Y+++E QLPR+ D IA+YYGL RGQVVK+
Sbjct: 51 EMLINIKEHVLVPEHQVLTNEEKKTLLERYTLKETQLPRIQITDPIARYYGLRRGQVVKI 110
Query: 161 TYSGEITESHVTYRCV 176
E +VTYR V
Sbjct: 111 IRPSETAGRYVTYRYV 126
>gi|149239546|ref|XP_001525649.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
gi|146451142|gb|EDK45398.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
Length = 179
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 88/172 (51%), Gaps = 7/172 (4%)
Query: 3 DGNGYDSSMEMEGGNGYNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVAL 62
D GY M + PT L F + GS L + + R + + +
Sbjct: 12 DSMGYPQRKLM----CFQATPTAEQLDKFPEMGS---LWVEFCDEPSVGIKTMRNFCIHI 64
Query: 63 SEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQE 122
SE N V F P ++L ++ S + + TDL+VNIT H L PKH L +E
Sbjct: 65 SEKNFQVGIFIYQNSITPSANKLIPTVQPASIETFQETDLIVNITHHELVPKHIKLNREE 124
Query: 123 KEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
K++LL++Y ++E QLPR+ ++D +A+Y GL+RG+VVK+ E + + +YR
Sbjct: 125 KKELLERYRLKESQLPRIQREDPVARYLGLKRGEVVKIIRRSETSGRYASYR 176
>gi|357125497|ref|XP_003564430.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Brachypodium distachyon]
Length = 210
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 58/77 (75%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++L+NI +HVL P+HQVLT+ EK+ LL++Y+++E QLPR+ D IA+YYGL+RGQVVK
Sbjct: 133 AEMLINIKEHVLVPEHQVLTNDEKKTLLERYTLKETQLPRIQITDPIARYYGLKRGQVVK 192
Query: 160 VTYSGEITESHVTYRCV 176
+ E +VTYR V
Sbjct: 193 IIRPSETAGRYVTYRYV 209
>gi|115440569|ref|NP_001044564.1| Os01g0805800 [Oryza sativa Japonica Group]
gi|55296830|dbj|BAD68174.1| putative DNA-directed RNA polymerase II 23K chain [Oryza sativa
Japonica Group]
gi|113534095|dbj|BAF06478.1| Os01g0805800 [Oryza sativa Japonica Group]
gi|215737136|dbj|BAG96065.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765546|dbj|BAG87243.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218189238|gb|EEC71665.1| hypothetical protein OsI_04128 [Oryza sativa Indica Group]
Length = 210
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 57/77 (74%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+LL+NI +HVL P+HQVL ++EK+ LL++Y+++E QLPR+ D IA+YYGL RGQVVK
Sbjct: 133 AELLINIKEHVLVPEHQVLNNEEKKTLLERYTLKETQLPRIQITDPIARYYGLRRGQVVK 192
Query: 160 VTYSGEITESHVTYRCV 176
+ E +VTYR V
Sbjct: 193 IIRPSETAGRYVTYRYV 209
>gi|360043810|emb|CCD81356.1| putative dna-directed RNA polymerase II [Schistosoma mansoni]
Length = 205
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 57/76 (75%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+L+VNIT+H L P+H VLT +EK++LL++Y ++E QLP+M D +A+YYGL RGQVV++
Sbjct: 129 ELMVNITEHQLVPQHNVLTQEEKKELLERYRLKENQLPKMQASDPVARYYGLRRGQVVRI 188
Query: 161 TYSGEITESHVTYRCV 176
T E ++TYR V
Sbjct: 189 TRPSETAGRYITYRIV 204
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 33/51 (64%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPS 96
R+T+L+M KDRGY V E+ S++DF+A G P L + ++H+ DP+
Sbjct: 13 RKTILKMCKDRGYLVMPKELEQSLEDFKATVGDPPTRKDLLMVVNHEEDPA 63
>gi|325181796|emb|CCA16252.1| DNAdirected RNA polymerase I putative [Albugo laibachii Nc14]
Length = 210
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 54/78 (69%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
T+LLV+IT+H L P H+VL +EK LLK+Y I++ QLPRM D IA+YYG+ RGQVVK
Sbjct: 133 TELLVDITEHTLVPVHRVLCREEKAALLKRYRIKDSQLPRMQTTDPIARYYGMVRGQVVK 192
Query: 160 VTYSGEITESHVTYRCVW 177
+ E +VTYR V
Sbjct: 193 IIRPSETAGRYVTYRAVM 210
>gi|256071874|ref|XP_002572263.1| DNA-directed RNA polymerase II [Schistosoma mansoni]
Length = 208
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 57/76 (75%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+L+VNIT+H L P+H VLT +EK++LL++Y ++E QLP+M D +A+YYGL RGQVV++
Sbjct: 132 ELMVNITEHQLVPQHNVLTQEEKKELLERYRLKENQLPKMQASDPVARYYGLRRGQVVRI 191
Query: 161 TYSGEITESHVTYRCV 176
T E ++TYR V
Sbjct: 192 TRPSETAGRYITYRIV 207
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 33/51 (64%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPS 96
R+T+L+M KDRGY V E+ S++DF+A G P L + ++H+ DP+
Sbjct: 16 RKTILKMCKDRGYLVMPKELEQSLEDFKATVGDPPTRKDLLMVVNHEEDPA 66
>gi|126275976|ref|XP_001386931.1| DNA-directed RNA polymerases II 24 kDa polypeptide (RNA polymerase
II subunit 5) [Scheffersomyces stipitis CBS 6054]
gi|126212800|gb|EAZ62908.1| DNA-directed RNA polymerases II 24 kDa polypeptide (RNA polymerase
II subunit 5) [Scheffersomyces stipitis CBS 6054]
Length = 213
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 3/156 (1%)
Query: 19 YNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQ 78
+ PT L F D GS L + + R + + +SE N S F
Sbjct: 58 FQANPTAESLDKFPDLGS---LWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQNSI 114
Query: 79 DPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLP 138
P ++L ++S S + + DL+VNIT H L PKH L+ EK++LL +Y ++E QLP
Sbjct: 115 TPSANKLIPTVSPASIETFQEGDLVVNITHHELVPKHIKLSRDEKKELLDRYRLKESQLP 174
Query: 139 RMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
R+ ++D +A+Y GL+RG+VVK+ E + + +YR
Sbjct: 175 RVQREDPVARYLGLKRGEVVKIIRRSETSGRYASYR 210
Score = 37.0 bits (84), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRA 74
R + S +TV EM++DRGY + E+++S+ +FRA
Sbjct: 9 RLFRSFKTVKEMVRDRGYYITQEEVDMSLDEFRA 42
>gi|409078308|gb|EKM78671.1| hypothetical protein AGABI1DRAFT_114282, partial [Agaricus bisporus
var. burnettii JB137-S8]
gi|426199299|gb|EKV49224.1| hypothetical protein AGABI2DRAFT_191302, partial [Agaricus bisporus
var. bisporus H97]
Length = 208
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 55/78 (70%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
DLLVNI H L P+H+VLT +EK+ LL+KY ++E QLPR+ D +A+YYGL RGQVVK
Sbjct: 131 ADLLVNIVHHTLVPRHEVLTPEEKKVLLEKYRLKETQLPRIQLADPVARYYGLRRGQVVK 190
Query: 160 VTYSGEITESHVTYRCVW 177
+T E + + +YR +
Sbjct: 191 ITRPSETSGRYASYRICF 208
>gi|405965226|gb|EKC30623.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Crassostrea gigas]
Length = 210
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 101/208 (48%), Gaps = 65/208 (31%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG---------------- 77
+ +++ + + R+T++++ DRGY V E++ ++++F+ +G
Sbjct: 2 DDEQETYKLWRIRKTIMQLCHDRGYLVTQDELDQTLEEFKGQFGDKPSERKPSRSDLIVL 61
Query: 78 ---------------------------------QDPDVDRLRISISHQSDPSKR--ITD- 101
Q+ ++ R I + ++ PS + +TD
Sbjct: 62 VAHNDDPTDQMFVFFPEEPNVGIKTIKTYCQRMQEENITRAIIVVQNRMTPSAKQSLTDM 121
Query: 102 -------------LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQ 148
LL+NIT+H+L P+H V+T +EK +LL +Y ++E QLPR+ + D +A+
Sbjct: 122 APKYILEQFLEAELLINITEHMLVPEHVVMTPEEKTELLSRYKLKESQLPRIQQGDPVAR 181
Query: 149 YYGLERGQVVKVTYSGEITESHVTYRCV 176
Y+GL+RGQVVK+ + E +V+YR V
Sbjct: 182 YFGLKRGQVVKIIRNSETAGRYVSYRLV 209
>gi|449455411|ref|XP_004145446.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
gi|449487698|ref|XP_004157756.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
Length = 205
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 58/77 (75%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+LLVNI HVL P+HQ+LT+++K+ LL++Y++++ QLPRM D IA+YYG++RGQVVK
Sbjct: 128 AELLVNIKDHVLIPEHQLLTNEDKKTLLERYTVKDTQLPRMQVTDPIARYYGMKRGQVVK 187
Query: 160 VTYSGEITESHVTYRCV 176
+ E +VTYR V
Sbjct: 188 IIRPSETAGRYVTYRYV 204
>gi|67469583|ref|XP_650770.1| RNA polymerase subunit Rpb5 [Entamoeba histolytica HM-1:IMSS]
gi|56467420|gb|EAL45380.1| RNA polymerase subunit Rpb5, putative [Entamoeba histolytica
HM-1:IMSS]
gi|407044881|gb|EKE42883.1| RNA polymerase Rpb5, C-terminal domain containing protein
[Entamoeba nuttalli P19]
gi|449705666|gb|EMD45670.1| RNA polymerase subunit Rpb5, putative [Entamoeba histolytica KU27]
Length = 204
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 57/77 (74%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+L+VN+T H+L P+H +L+ +EK++LLKKY ++E QLPR+L D I++YYG +RG VVK+
Sbjct: 128 ELIVNVTHHILVPQHILLSPEEKQELLKKYQVKESQLPRLLTSDPISKYYGFQRGDVVKI 187
Query: 161 TYSGEITESHVTYRCVW 177
E +VTYR V+
Sbjct: 188 IRKSETAGRYVTYRAVF 204
>gi|302795809|ref|XP_002979667.1| hypothetical protein SELMODRAFT_228648 [Selaginella moellendorffii]
gi|302807361|ref|XP_002985375.1| hypothetical protein SELMODRAFT_181697 [Selaginella moellendorffii]
gi|300146838|gb|EFJ13505.1| hypothetical protein SELMODRAFT_181697 [Selaginella moellendorffii]
gi|300152427|gb|EFJ19069.1| hypothetical protein SELMODRAFT_228648 [Selaginella moellendorffii]
Length = 206
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 57/77 (74%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+LLVNI +H L P+HQVL+ +EK+ LL++Y+++E QLPRM +D +A+YYGL+ GQVVK
Sbjct: 129 AELLVNIKEHTLVPEHQVLSAEEKKTLLERYTVKESQLPRMQDRDPVARYYGLKHGQVVK 188
Query: 160 VTYSGEITESHVTYRCV 176
+ E +VTYR V
Sbjct: 189 IIRPSETAGRYVTYRYV 205
>gi|56755813|gb|AAW26085.1| SJCHGC05306 protein [Schistosoma japonicum]
gi|226469816|emb|CAX70189.1| polymerase (RNA) II (DNA directed) polypeptide E [Schistosoma
japonicum]
gi|226469818|emb|CAX70190.1| polymerase (RNA) II (DNA directed) polypeptide E [Schistosoma
japonicum]
gi|226487596|emb|CAX74668.1| polymerase (RNA) II (DNA directed) polypeptide E [Schistosoma
japonicum]
Length = 206
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 57/76 (75%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+L+VNIT+H L P+H VLT +EK++LL++Y ++E QLP+M D +A+YYGL RGQVV++
Sbjct: 130 ELMVNITEHQLVPQHDVLTQEEKKELLERYRLKENQLPKMQASDPVARYYGLRRGQVVRI 189
Query: 161 TYSGEITESHVTYRCV 176
T E ++TYR V
Sbjct: 190 TRPSETAGRYITYRIV 205
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 33/51 (64%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPS 96
R+T+L+M KDRGY V E+ S++DF+A G P L + ++H+ DP+
Sbjct: 14 RKTILKMCKDRGYLVMPKELEQSLEDFKATVGDPPARKDLLMVVNHEEDPA 64
>gi|432855570|ref|XP_004068252.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 2 [Oryzias latipes]
Length = 159
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 85/158 (53%), Gaps = 24/158 (15%)
Query: 38 DSLRYYLSRRTVLEMLKDRGY---AVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSD 94
++ R + R+T++++ DRGY V + I + Q Q+ ++ R I +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLEPKVGIKTIKMYCQRM-----QEENITRAIIVVQMGMT 60
Query: 95 PSKRIT----------------DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLP 138
PS + + +LL+NIT+H L P+H V+T +E +LL +Y ++E QLP
Sbjct: 61 PSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKESQLP 120
Query: 139 RMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 176
R+ D +A+Y+GL+RGQVVK+ E ++TYR V
Sbjct: 121 RIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 158
>gi|320168277|gb|EFW45176.1| DNA-directed RNA polymerase 2 [Capsaspora owczarzaki ATCC 30864]
Length = 211
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 55/77 (71%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNIT+H L PKH+VL+D +K LLK+Y ++E QLPR+ D +A+Y GL RGQVV++
Sbjct: 135 ELLVNITRHTLVPKHEVLSDDDKIALLKQYKLKEAQLPRIHSTDPVARYLGLRRGQVVRI 194
Query: 161 TYSGEITESHVTYRCVW 177
T E ++TYR V
Sbjct: 195 TRQSETAGRYITYRLVL 211
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 32 VDNGSRDSL-RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRA--IYGQD--PDVDRLR 86
+D+ + L R Y +TV++M DR Y V E+ +++ FRA G D P +R+
Sbjct: 1 MDSAEQQHLQRMYRIYQTVMQMCHDRHYIVTADELEQNLETFRAKVCTGNDLTPVRERML 60
Query: 87 ISISHQSDPSKRITDLLVNITKHVLKPKHQVL 118
+ +++ DP+K I + K + P Q++
Sbjct: 61 CNFAYKDDPTKSILVMFATEVKVGVAPIRQMI 92
>gi|50550027|ref|XP_502486.1| YALI0D06457p [Yarrowia lipolytica]
gi|54036340|sp|Q6CA26.1|RPAB1_YARLI RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1
gi|49648354|emb|CAG80674.1| YALI0D06457p [Yarrowia lipolytica CLIB122]
Length = 212
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 71/119 (59%)
Query: 56 RGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKH 115
R + + +SE + P +RL S++ + + + TDLLVNITKHVL P H
Sbjct: 91 RNFCIHISENKFATGILVYENNMTPSANRLIPSVAPATIDTFQETDLLVNITKHVLVPTH 150
Query: 116 QVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
L+ EK+ LL++Y ++E QLPR+ ++D +A+Y GL RGQ+VK+ E + + +YR
Sbjct: 151 IKLSGAEKKFLLERYRLKESQLPRIQREDPVARYLGLRRGQIVKIIRRSETSGRYASYR 209
>gi|449543190|gb|EMD34167.1| hypothetical protein CERSUDRAFT_141708, partial [Ceriporiopsis
subvermispora B]
Length = 208
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 57/78 (73%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+DLLVNIT H L P+H+VLT +EK++LL+ Y ++E QLPR+ D +A+YYGL+RG VVK
Sbjct: 131 SDLLVNITHHTLVPRHEVLTAEEKKELLETYRLKETQLPRIQLADPVARYYGLKRGNVVK 190
Query: 160 VTYSGEITESHVTYRCVW 177
+T E + + +YR +
Sbjct: 191 ITRPSETSGRYASYRICF 208
Score = 42.7 bits (99), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDP-DVDR--LRISISHQSD 94
DS + + RT+ E++KDRG+ V+ EIN+ + FR+ Y + VDR L +H S+
Sbjct: 6 DSAKLWKVNRTIHELVKDRGFQVSDDEINMDLATFRSHYANNSGSVDRSQLNFFTNHTSN 65
Query: 95 PSKRI 99
P +I
Sbjct: 66 PLVQI 70
>gi|302854284|ref|XP_002958651.1| hypothetical protein VOLCADRAFT_109457 [Volvox carteri f.
nagariensis]
gi|300255976|gb|EFJ40254.1| hypothetical protein VOLCADRAFT_109457 [Volvox carteri f.
nagariensis]
Length = 202
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 88/197 (44%), Gaps = 61/197 (30%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPS---- 96
R + RRT L+ML DRGY V+ EIN S FR +G++P D L I + Q DP+
Sbjct: 6 RLWRVRRTCLQMLNDRGYLVSQEEINTSKDQFRDRFGENPRKDDLTILVPKQDDPTEQMF 65
Query: 97 ------------------KRITDLLVNITKHV---------------LKPKH-------- 115
+R+ D VN V ++PK+
Sbjct: 66 VFFPEEQKVGVKTIKLLAERMKDEKVNRAIMVTAVKFTPFAKSALEDMRPKYCIEHFLES 125
Query: 116 ---------------QVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
++L+ EK LL +Y I+E QLPR+ DA+A+Y GL+RGQVV++
Sbjct: 126 ELLVNITEHTLVPEHRILSPDEKRTLLDRYKIKETQLPRIQSSDAVARYLGLQRGQVVRI 185
Query: 161 TYSGEITESHVTYR-CV 176
E +VTYR CV
Sbjct: 186 VRPSETAGRYVTYRFCV 202
>gi|392564185|gb|EIW57363.1| DNA-directed RNA polymerase RPB5 subunit [Trametes versicolor
FP-101664 SS1]
Length = 209
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 57/78 (73%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+DLLVNIT H L PKH++LT Q+K++LL+ Y ++E QLPR+ D +A+YYGL+RG VVK
Sbjct: 132 SDLLVNITHHTLVPKHELLTPQQKKELLETYRLKETQLPRIQLADPVARYYGLKRGNVVK 191
Query: 160 VTYSGEITESHVTYRCVW 177
+T E + + +YR +
Sbjct: 192 ITRPSETSGRYASYRICF 209
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG-QDPDVDR--LRISISHQSD 94
+S + + RT+ E++KDRG+ V+ EIN+ + FR Y Q VDR L +H+ +
Sbjct: 7 ESAKLWKVNRTIHELVKDRGFQVSDDEINMDLSTFRDHYANQSGSVDRSQLNFFTNHRDN 66
Query: 95 PSKRI 99
PS +I
Sbjct: 67 PSVQI 71
>gi|170098869|ref|XP_001880653.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644178|gb|EDR08428.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 208
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 84/167 (50%), Gaps = 24/167 (14%)
Query: 29 SGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG--QDPDVDRLR 86
SG VD R+ L +Y + RT D+ + E ++ V+ R + G ++ + R
Sbjct: 48 SGVVD---RNQLNFYTTSRT---NSTDQIFVFFSEEKSVGVKTMRKLLGILEEKSIQRGI 101
Query: 87 ISISHQSDPSKRIT----------------DLLVNITKHVLKPKHQVLTDQEKEKLLKKY 130
I PS R DLLVNI H L P+H VL+ EK+ LL+KY
Sbjct: 102 IVFPGNMTPSARKVIVAMAQQYRLEEFSEADLLVNIVHHTLVPRHDVLSPDEKKTLLEKY 161
Query: 131 SIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 177
++E QLPR+ D +A+YYGL RGQVVK+T E + + +YR +
Sbjct: 162 RLKETQLPRIQLADPVARYYGLRRGQVVKITRPSETSGRYASYRICF 208
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 26/36 (72%)
Query: 47 RTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDV 82
RT+ E++KDRG+ V+ EI++ +Q FR++Y + V
Sbjct: 15 RTIHELVKDRGFLVSDDEIHMDLQRFRSLYANNSGV 50
>gi|388499936|gb|AFK38034.1| unknown [Lotus japonicus]
Length = 206
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 57/76 (75%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNI +HVL P+HQ+L + EK+ LL++Y+++E QLPR+ D +A+YYGL+RGQVVK+
Sbjct: 130 ELLVNIKEHVLVPEHQILNETEKKTLLERYTVKETQLPRIQITDPVARYYGLKRGQVVKI 189
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 190 IRPSETAGRYITYRFV 205
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSK 97
D + + R+TV++ML+DR Y V EIN+S +F+ YG + + L I+ + + PS
Sbjct: 7 DITKLHRIRKTVMQMLRDRNYLVGDFEINMSRHEFKTKYGDNMKREDLTINKTKKDGPSD 66
Query: 98 RI 99
+I
Sbjct: 67 QI 68
>gi|452822190|gb|EME29212.1| DNA-directed RNA polymerase II subunit E [Galdieria sulphuraria]
Length = 212
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 57/76 (75%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNIT H L PKH+VL+ + K++LLK+Y ++E QLPR+L D +A+Y GL++GQVVK+
Sbjct: 136 ELLVNITHHELVPKHEVLSTEGKKQLLKRYHLKESQLPRILMTDPVARYLGLQKGQVVKI 195
Query: 161 TYSGEITESHVTYRCV 176
T E +VTYR V
Sbjct: 196 TRPSETAGRYVTYRLV 211
>gi|429861288|gb|ELA35981.1| DNA-directed RNA polymerases ii 24 kda polypeptide [Colletotrichum
gloeosporioides Nara gc5]
Length = 204
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 58/77 (75%), Gaps = 1/77 (1%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNITKH L P+H +L+ +EK LLK+Y ++E QLPR+L+KD +A+Y GL+RGQVVK+
Sbjct: 128 DLLVNITKHELVPRHILLSREEKIALLKRYRLKETQLPRILQKDPVAKYLGLKRGQVVKI 187
Query: 161 TYSGEITESHVTYR-CV 176
+ E + +YR CV
Sbjct: 188 IRNSETAGRYASYRLCV 204
>gi|301106302|ref|XP_002902234.1| DNA-directed RNA polymerase I, II, and III subunit RPABC1, putative
[Phytophthora infestans T30-4]
gi|262098854|gb|EEY56906.1| DNA-directed RNA polymerase I, II, and III subunit RPABC1, putative
[Phytophthora infestans T30-4]
Length = 206
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 52/77 (67%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
T+LLV+IT+H L P H+VL EK LLK+Y I + QLPRM D IA+YYGL RGQVVK
Sbjct: 129 TELLVDITEHTLVPVHRVLDRNEKAALLKRYRIRDSQLPRMQVTDPIARYYGLNRGQVVK 188
Query: 160 VTYSGEITESHVTYRCV 176
+ E +VTYR V
Sbjct: 189 IIRPSETAGRYVTYRAV 205
>gi|237834761|ref|XP_002366678.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1,
putative [Toxoplasma gondii ME49]
gi|211964342|gb|EEA99537.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1,
putative [Toxoplasma gondii ME49]
gi|221486036|gb|EEE24306.1| DNA-directed RNA polymerase II 23 kDa, putative [Toxoplasma gondii
GT1]
gi|221503532|gb|EEE29223.1| DNA-directed RNA polymerase II 23 kDa, putative [Toxoplasma gondii
VEG]
Length = 205
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 54/77 (70%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++LLVNITKH L PKH LT+ EK+ LL +Y ++E QLPR+ D +A+Y+GL RGQVVK
Sbjct: 128 SELLVNITKHELVPKHVPLTNDEKQNLLNRYRVKEIQLPRIQSADPVARYFGLSRGQVVK 187
Query: 160 VTYSGEITESHVTYRCV 176
+ E +VTYR V
Sbjct: 188 IIRPSETAGRYVTYRLV 204
>gi|336267790|ref|XP_003348660.1| hypothetical protein SMAC_01684 [Sordaria macrospora k-hell]
gi|380093918|emb|CCC08134.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 234
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNIT H L PKH +L+ +EK LLK+Y ++E QLPR+L KD IA+Y GL+RGQVVK+
Sbjct: 158 DLLVNITHHELVPKHVLLSKEEKAALLKRYRLKETQLPRILSKDPIARYLGLKRGQVVKI 217
Query: 161 TYSGEITESHVTYR-CV 176
E + +YR CV
Sbjct: 218 IRVSETAGRYASYRLCV 234
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRIS 88
+ S++ R + + RTV EM++DRGY +A E+ +S++ F+ Y + P+ +L+ S
Sbjct: 9 SASKEVSRLWRAWRTVHEMVQDRGYELAEDEVKISLERFKLEYTNEDGTPNRGKLQFS 66
>gi|449462431|ref|XP_004148944.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
Length = 207
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 57/76 (75%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNI HVL P+HQ+L ++EK+ LL++Y+++E QLPR+ D +A+YYGL+RGQVVK+
Sbjct: 131 ELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKI 190
Query: 161 TYSGEITESHVTYRCV 176
E +VTYR V
Sbjct: 191 IRPSETAGRYVTYRYV 206
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIT 100
R + R+TV +ML+DRGY V EI+++ + F+ YG++ + + I+ S ++D S +I
Sbjct: 10 RLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSKRNDSSDQIY 69
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL---PRMLKKDAIAQYYGLERGQ 156
K +KP T + E + + + ++ L R +A ++ + LE Q
Sbjct: 70 VFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSKSFHLEVFQ 128
>gi|336471719|gb|EGO59880.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Neurospora
tetrasperma FGSC 2508]
gi|350292835|gb|EGZ74030.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Neurospora
tetrasperma FGSC 2509]
Length = 234
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNIT H L PKH +L+ +EK LLK+Y ++E QLPR+L KD IA+Y GL+RGQVVK+
Sbjct: 158 DLLVNITHHELVPKHVLLSKEEKAALLKRYRLKETQLPRILSKDPIARYLGLKRGQVVKI 217
Query: 161 TYSGEITESHVTYR-CV 176
E + +YR CV
Sbjct: 218 IRVSETAGRYASYRLCV 234
Score = 38.9 bits (89), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRIS 88
+ S++ R + + RTV EM++DRGY ++ E+ +S++ F+A Y + P+ +L+ S
Sbjct: 9 SASKEVSRLWRAWRTVHEMVQDRGYELSEDEVKISLERFKAEYTNEDGTPNRAKLQFS 66
>gi|85105978|ref|XP_962076.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Neurospora
crassa OR74A]
gi|28923670|gb|EAA32840.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Neurospora
crassa OR74A]
Length = 234
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNIT H L PKH +L+ +EK LLK+Y ++E QLPR+L KD IA+Y GL+RGQVVK+
Sbjct: 158 DLLVNITHHELVPKHVLLSKEEKAALLKRYRLKETQLPRILSKDPIARYLGLKRGQVVKI 217
Query: 161 TYSGEITESHVTYR-CV 176
E + +YR CV
Sbjct: 218 IRVSETAGRYASYRLCV 234
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRIS 88
+ S++ R + + RTV EM++DRGY +A E+ +S++ F+A Y + P+ +L+ S
Sbjct: 9 SASKEVSRLWRAWRTVHEMVQDRGYELAEDEVKISLERFKAEYTNEDGTPNRAKLQFS 66
>gi|326492457|dbj|BAK02012.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326504136|dbj|BAK02854.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511589|dbj|BAJ91939.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 210
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 57/77 (74%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++L+NI +HVL P+HQVL ++EK+ LL +Y+++E QLPR+ D IA+YYGL+RGQVVK
Sbjct: 133 AEMLINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVVK 192
Query: 160 VTYSGEITESHVTYRCV 176
+ E +VTYR V
Sbjct: 193 IIRPSETAGRYVTYRYV 209
>gi|344302236|gb|EGW32541.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Spathaspora
passalidarum NRRL Y-27907]
Length = 214
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 85/156 (54%), Gaps = 3/156 (1%)
Query: 19 YNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQ 78
+ +PT L F D G+ L + + R + + ++E N S F
Sbjct: 59 FQAQPTGESLEKFPDLGA---LWVEFCDEASVGIKTMRNFCIHITEKNFSTGLFIYQNSI 115
Query: 79 DPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLP 138
P ++L ++S S + + DL+VNIT H L PKH L+ EK++LL++Y ++E QLP
Sbjct: 116 TPSANKLIPTVSPASIETFQEGDLVVNITHHELVPKHIKLSKDEKKELLERYRLKESQLP 175
Query: 139 RMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
R+ ++D +A+Y GL+RG+VVK+ E + + +YR
Sbjct: 176 RIQREDPVARYLGLKRGEVVKIIRRSETSGRYASYR 211
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 32 VDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRA 74
+D+ R R + S +TV EM++DRGY + EI++++ +FRA
Sbjct: 1 MDDNDRVISRLFRSFKTVKEMVRDRGYYITQEEIDMTLDEFRA 43
>gi|449502080|ref|XP_004161536.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
Length = 208
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 57/76 (75%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNI HVL P+HQ+L ++EK+ LL++Y+++E QLPR+ D +A+YYGL+RGQVVK+
Sbjct: 132 ELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKI 191
Query: 161 TYSGEITESHVTYRCV 176
E +VTYR V
Sbjct: 192 IRPSETAGRYVTYRYV 207
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 38/59 (64%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRI 99
R + R+TV +ML+DRGY V EI+++ + F+ YG++ + + I+ S ++D S ++
Sbjct: 10 RLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSKRNDSSDQV 68
>gi|219112619|ref|XP_002178061.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410946|gb|EEC50875.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 228
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 54/76 (71%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++LLV+ITKH L P HQVLT EK +LLK+Y +++ QLPR+ D +A+YYG+ RGQVVK
Sbjct: 151 SELLVDITKHQLVPVHQVLTPNEKNELLKRYRLKDSQLPRIQSNDPVARYYGMRRGQVVK 210
Query: 160 VTYSGEITESHVTYRC 175
+ E +VTYR
Sbjct: 211 IIRPSETAGRYVTYRI 226
>gi|403418276|emb|CCM04976.1| predicted protein [Fibroporia radiculosa]
Length = 207
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNIT H L PKH+VL+ +EK++LL+ Y ++E QLPR+ D +A+YYGL+RG VVK+
Sbjct: 131 DLLVNITHHTLVPKHEVLSPKEKKELLETYRLKETQLPRIQTADPVARYYGLKRGMVVKI 190
Query: 161 TYSGEITESHVTYRCVW 177
T E + +YR +
Sbjct: 191 TRPSETAGRYASYRICF 207
>gi|68489026|ref|XP_711626.1| hypothetical protein CaO19.13696 [Candida albicans SC5314]
gi|68489167|ref|XP_711558.1| hypothetical protein CaO19.6340 [Candida albicans SC5314]
gi|46432871|gb|EAK92334.1| hypothetical protein CaO19.6340 [Candida albicans SC5314]
gi|46432944|gb|EAK92404.1| hypothetical protein CaO19.13696 [Candida albicans SC5314]
Length = 179
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 82/156 (52%), Gaps = 3/156 (1%)
Query: 19 YNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQ 78
+ PT L F + GS L + + R + + ++E N S F
Sbjct: 24 FQATPTAETLEKFPETGS---LWVEFCDEASVGIKTMRNFCIHITEKNFSTGIFIYQNSM 80
Query: 79 DPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLP 138
P ++L ++S + + DL+VNIT H L PKH L +EK++LL +Y ++E QLP
Sbjct: 81 TPSANKLIPTVSPATIEIFQENDLIVNITHHELVPKHLKLNREEKKELLTRYRLKESQLP 140
Query: 139 RMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
R+ ++D +A+Y GL+RG++VK+ E + + +YR
Sbjct: 141 RIQREDPVARYLGLKRGEIVKIIRRSETSGRYASYR 176
>gi|367046000|ref|XP_003653380.1| hypothetical protein THITE_2170468 [Thielavia terrestris NRRL 8126]
gi|347000642|gb|AEO67044.1| hypothetical protein THITE_2170468 [Thielavia terrestris NRRL 8126]
Length = 234
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 56/77 (72%), Gaps = 1/77 (1%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNIT H L PKH +L+ +EK LLK+Y ++E QLPR+L KD IA+Y GL++GQVVK+
Sbjct: 158 DLLVNITHHELVPKHVLLSREEKAALLKRYRLKETQLPRILSKDPIARYLGLKKGQVVKI 217
Query: 161 TYSGEITESHVTYR-CV 176
+ E + +YR CV
Sbjct: 218 IRTSETAGRYASYRLCV 234
Score = 39.7 bits (91), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 36 SRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRIS 88
+++ R + + RT+ EM++DRGY +A E+ +S+ FRA Y D P+ +++ S
Sbjct: 11 AKEVTRLWRAWRTIHEMVQDRGYELAEEEVKISLDRFRAEYTNDDGSPNRAKMQFS 66
>gi|291000790|ref|XP_002682962.1| predicted protein [Naegleria gruberi]
gi|284096590|gb|EFC50218.1| predicted protein [Naegleria gruberi]
Length = 229
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 55/77 (71%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
T+LLVNIT+HVL P+H L + E+LL++Y ++E QLPRM D IA+YYGL+RG +VK
Sbjct: 152 TELLVNITEHVLVPQHVPLNKAQHEELLQRYKLKETQLPRMKVTDPIARYYGLQRGAIVK 211
Query: 160 VTYSGEITESHVTYRCV 176
+ S E +VTYR V
Sbjct: 212 IIRSSETAGRYVTYRYV 228
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 15/83 (18%)
Query: 32 VDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPD---------- 81
++N + +S R + R+TVL+ML RGY V SE N+ + +F + +G P+
Sbjct: 1 MNNANSESYRLWRIRKTVLQMLDARGYMVLESEKNMDLAEFESKFGTGPNNVSQSGQARG 60
Query: 82 -----VDRLRISISHQSDPSKRI 99
DRL I S DPS+ I
Sbjct: 61 YTTIGRDRLSIVTSMADDPSEMI 83
>gi|380495005|emb|CCF32725.1| DNA-directed RNA polymerase II polypeptide [Colletotrichum
higginsianum]
Length = 107
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 58/77 (75%), Gaps = 1/77 (1%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNIT+H L PKH +L+ +EK LLK+Y ++E QLPR+L+KD +A+Y GL+RGQVVK+
Sbjct: 31 DLLVNITQHELVPKHILLSREEKVALLKRYRLKETQLPRILQKDPVAKYLGLKRGQVVKI 90
Query: 161 TYSGEITESHVTYR-CV 176
+ E + +YR CV
Sbjct: 91 IRTSETAGRYASYRLCV 107
>gi|50426767|ref|XP_461981.1| DEHA2G09988p [Debaryomyces hansenii CBS767]
gi|54036338|sp|Q6BIJ0.1|RPAB1_DEBHA RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1
gi|49657651|emb|CAG90451.1| DEHA2G09988p [Debaryomyces hansenii CBS767]
Length = 214
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 82/156 (52%), Gaps = 3/156 (1%)
Query: 19 YNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQ 78
+ PT L F D GS L + + R + + +SE N S F
Sbjct: 59 FQANPTAESLEKFPDLGS---LWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQSSI 115
Query: 79 DPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLP 138
P ++L ++S S + + DL+VNIT H L PKH L EK++LL++Y ++E QLP
Sbjct: 116 TPSANKLIPTVSPASIETFQEGDLVVNITHHDLVPKHIKLARDEKKELLERYRLKESQLP 175
Query: 139 RMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
R+ ++D + +Y GL+RG+VVK+ E + + +YR
Sbjct: 176 RIQREDPVGRYLGLKRGEVVKIIRRSETSGRYASYR 211
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 32 VDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISH 91
+++ R R + S +TV EM++DRGY + EI++S+ +FR+ +V + ++ +
Sbjct: 1 MEDTDRTISRLWRSFKTVKEMVRDRGYYITQEEIDMSLAEFRSRICDSMNVPQRKL-MCF 59
Query: 92 QSDPS 96
Q++P+
Sbjct: 60 QANPT 64
>gi|367022836|ref|XP_003660703.1| hypothetical protein MYCTH_2314258 [Myceliophthora thermophila ATCC
42464]
gi|347007970|gb|AEO55458.1| hypothetical protein MYCTH_2314258 [Myceliophthora thermophila ATCC
42464]
Length = 234
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 56/77 (72%), Gaps = 1/77 (1%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNIT H L PKH +L+ +EK LLK+Y ++E QLPR+L KD IA+Y GL++GQVVK+
Sbjct: 158 DLLVNITHHELVPKHVLLSREEKAALLKRYRLKETQLPRILSKDPIARYLGLKKGQVVKI 217
Query: 161 TYSGEITESHVTYR-CV 176
+ E + +YR CV
Sbjct: 218 IRTSETAGRYASYRLCV 234
Score = 38.5 bits (88), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY-GQDPDVDRLRISIS 90
++ R + + RTV EM++DRGY +A E+ +S+ FRA Y +D +R ++ S
Sbjct: 12 KEVTRLWRAWRTVHEMVQDRGYELAEDEVKISLDRFRAEYTNEDGSPNRAKMQFS 66
>gi|392576849|gb|EIW69979.1| hypothetical protein TREMEDRAFT_29545 [Tremella mesenterica DSM
1558]
Length = 218
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 54/75 (72%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
DLLVNIT+H L PKH ++ +EK L+K+Y ++E QLPR++ D +A+YYG+ RGQV+K
Sbjct: 141 ADLLVNITRHFLVPKHTIMRPEEKAALIKRYRLKETQLPRIMITDPVAKYYGMRRGQVMK 200
Query: 160 VTYSGEITESHVTYR 174
+ + E ++TYR
Sbjct: 201 IERASETAGRYITYR 215
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG 77
R+ R + RTV EM++DRGY VA EI S +DF+ +G
Sbjct: 7 RELARLWRVSRTVHEMVRDRGYLVAEYEIEQSFEDFKDAHG 47
>gi|342884561|gb|EGU84768.1| hypothetical protein FOXB_04663 [Fusarium oxysporum Fo5176]
Length = 236
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNIT H L PKH +L+ +EK LLK+Y ++E QLPR+L+KD +A+Y GL+RGQVVK+
Sbjct: 160 DLLVNITHHELVPKHVLLSREEKLALLKRYRLKETQLPRILQKDPVARYLGLKRGQVVKI 219
Query: 161 TYSGEITESHVTYR-CV 176
+ E + +YR CV
Sbjct: 220 IRNSETAGRYASYRLCV 236
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQ 92
D S++ +R + + RT+ EM+ DR Y +A E+ +S+ FR Y +PD R +
Sbjct: 9 DARSKEVVRLWRAWRTIHEMVADREYELAEEEVKISLDRFRDEYC-NPDGSINRAKLQFS 67
Query: 93 SDPSKRI 99
+ PS+ +
Sbjct: 68 ARPSENM 74
>gi|238878328|gb|EEQ41966.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Candida
albicans WO-1]
Length = 214
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 82/156 (52%), Gaps = 3/156 (1%)
Query: 19 YNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQ 78
+ PT L F + GS L + + R + + ++E N S F
Sbjct: 59 FQATPTAETLEKFPETGS---LWVEFCDEASVGIKTMRNFCIHITEKNFSTGIFIYQNSM 115
Query: 79 DPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLP 138
P ++L ++S + + DL+VNIT H L PKH L +EK++LL +Y ++E QLP
Sbjct: 116 TPSANKLIPTVSPATIEIFQENDLIVNITHHELVPKHLKLNREEKKELLTRYRLKESQLP 175
Query: 139 RMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
R+ ++D +A+Y GL+RG++VK+ E + + +YR
Sbjct: 176 RIQREDPVARYLGLKRGEIVKIIRRSETSGRYASYR 211
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 31/43 (72%)
Query: 32 VDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRA 74
+D+ R R + S +TV EM++DRGY ++ E+++++++FR+
Sbjct: 1 MDDTDRAVSRLFRSFKTVKEMVRDRGYYISQEELDMTLEEFRS 43
>gi|448112295|ref|XP_004202060.1| Piso0_001533 [Millerozyma farinosa CBS 7064]
gi|359465049|emb|CCE88754.1| Piso0_001533 [Millerozyma farinosa CBS 7064]
Length = 214
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 81/156 (51%), Gaps = 3/156 (1%)
Query: 19 YNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQ 78
+ PT L F GS L + + R + + +SE N S F
Sbjct: 59 FQANPTAEALEKFPSLGS---LWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQASI 115
Query: 79 DPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLP 138
P +L ++S S + + +DL+VNIT H L PKH L+ EK++LL +Y ++E QLP
Sbjct: 116 TPSATKLIPTVSPASIETFQESDLVVNITHHELVPKHIKLSKDEKKELLDRYRLKESQLP 175
Query: 139 RMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
R+ + D +A+Y GL+RG+VVK+ E + + +YR
Sbjct: 176 RIQRDDPVARYLGLKRGEVVKIIRRSETSGRYASYR 211
Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 32 VDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISH 91
+D+ R R + + +TV EM++DRGY + EI +S+ +FRA + + R+ +
Sbjct: 1 MDDNDRTVSRLWRTFKTVKEMVRDRGYYITQEEIEMSLDEFRAHVCDSMGIPQRRL-MCF 59
Query: 92 QSDPS 96
Q++P+
Sbjct: 60 QANPT 64
>gi|254570507|ref|XP_002492363.1| RNA polymerase subunit ABC27, common to RNA polymerases I, II, and
III [Komagataella pastoris GS115]
gi|238032161|emb|CAY70112.1| RNA polymerase subunit ABC27, common to RNA polymerases I, II, and
III [Komagataella pastoris GS115]
gi|328353624|emb|CCA40022.1| DNA-directed RNA polymerase II subunit E [Komagataella pastoris CBS
7435]
Length = 214
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 10/163 (6%)
Query: 21 GEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKD---------RGYAVALSEINLSVQD 71
G P +S F+ N + ++L Y T+ D R + + + E N S
Sbjct: 50 GNPQRKLMS-FLANPTPEALEKYSDLGTLWVEFCDEPSVGIKTMRNFCLRIQEKNFSTGI 108
Query: 72 FRAIYGQDPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYS 131
F P +++ ++S + + +DL+VNIT H L PKH L+D EK +LL++Y
Sbjct: 109 FIYQNNITPSANKMIPTVSPAIIETFQESDLVVNITHHELVPKHIRLSDGEKSQLLQRYK 168
Query: 132 IEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
++E QLPR+ ++D +A+Y GL+RGQVVK+ E + + +YR
Sbjct: 169 LKESQLPRIQREDPVARYLGLKRGQVVKIIRRSETSGRYASYR 211
>gi|222619416|gb|EEE55548.1| hypothetical protein OsJ_03801 [Oryza sativa Japonica Group]
Length = 210
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 56/77 (72%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+LL+NI +HVL P+HQVL + EK+ LL++Y+++E QLPR+ D IA+YYGL RGQVVK
Sbjct: 133 AELLINIKEHVLVPEHQVLNNGEKKTLLERYTLKETQLPRIQITDPIARYYGLRRGQVVK 192
Query: 160 VTYSGEITESHVTYRCV 176
+ E +VTYR V
Sbjct: 193 IIRPSETAGRYVTYRYV 209
>gi|241950235|ref|XP_002417840.1| DNA-directed RNA polymerases I, II and III subunit, putative
[Candida dubliniensis CD36]
gi|223641178|emb|CAX45555.1| DNA-directed RNA polymerases I, II and III subunit, putative
[Candida dubliniensis CD36]
Length = 214
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 83/156 (53%), Gaps = 3/156 (1%)
Query: 19 YNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQ 78
+ PT L F + GS L + + + R + + ++E N S F
Sbjct: 59 FQATPTGETLEKFPETGS---LWVEFCDESSVGIKTMRNFCIHITEKNFSTGIFIYQNSM 115
Query: 79 DPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLP 138
P ++L ++S + + DL+VNIT H L PKH L +EK++LL +Y ++E QLP
Sbjct: 116 TPSANKLIPTVSPATIEIFQENDLIVNITHHELVPKHLKLNHEEKKELLTRYRLKESQLP 175
Query: 139 RMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
R+ ++D +A+Y GL+RG++VK+ E + + +YR
Sbjct: 176 RIQREDPVARYLGLKRGEIVKIIRRSETSGRYASYR 211
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 31/43 (72%)
Query: 32 VDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRA 74
+D+ R R + S +TV EM++DRGY ++ E+++++++FR+
Sbjct: 1 MDDTDRAVSRLFRSFKTVKEMVRDRGYYISQEELDMTLEEFRS 43
>gi|397611881|gb|EJK61509.1| hypothetical protein THAOC_17988 [Thalassiosira oceanica]
Length = 581
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 55/75 (73%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+LLV+IT+H L P+HQVL+ EK++LL++Y + E QLPR+ D +A+YYG++RGQVVK
Sbjct: 504 AELLVDITEHTLVPEHQVLSQNEKQELLRRYRLRETQLPRIQPNDPVARYYGMKRGQVVK 563
Query: 160 VTYSGEITESHVTYR 174
+ E +VTYR
Sbjct: 564 IIRPSETAGRYVTYR 578
>gi|167517495|ref|XP_001743088.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778187|gb|EDQ91802.1| predicted protein [Monosiga brevicollis MX1]
Length = 176
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 88/164 (53%), Gaps = 27/164 (16%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRIS-----ISHQSDP 95
R + R T+ ++ +DRGY V ++ L+ + F +G P ++ R S + SDP
Sbjct: 13 RLWRVRVTLAQLCQDRGYDVKSEDLLLTREGFAERFGSQPLNEQPRRSDLDFVVQRASDP 72
Query: 96 SKRI---------------------TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEE 134
+ ++ +L+VN+TKH L PKH + T +EK LL++Y ++E
Sbjct: 73 TDQLGVYFANDPKVGIAVVRDFFEEKELVVNVTKHELVPKHFLQTPEEKAALLERYKLKE 132
Query: 135 KQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITES-HVTYRCVW 177
+QLPR+ D IA+Y GL+RGQVVK+ T +V+YR V+
Sbjct: 133 QQLPRIKVTDPIARYLGLKRGQVVKIIRENSPTAGRYVSYRLVF 176
>gi|116196520|ref|XP_001224072.1| hypothetical protein CHGG_04858 [Chaetomium globosum CBS 148.51]
gi|88180771|gb|EAQ88239.1| hypothetical protein CHGG_04858 [Chaetomium globosum CBS 148.51]
Length = 220
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 56/77 (72%), Gaps = 1/77 (1%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNIT H L PKH +L+ +EK LLK+Y ++E QLPR+L KD IA+Y GL++GQVVK+
Sbjct: 144 DLLVNITHHELVPKHVLLSREEKTALLKRYRLKETQLPRILSKDPIARYLGLKKGQVVKI 203
Query: 161 TYSGEITESHVTYR-CV 176
+ E + +YR CV
Sbjct: 204 IRTSETAGRYASYRLCV 220
>gi|414586665|tpg|DAA37236.1| TPA: hypothetical protein ZEAMMB73_455773 [Zea mays]
Length = 203
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+LLVNI HVL P+H +LT ++K+ LL++Y+++E QLPR+ D IA+YYG++RGQVVK
Sbjct: 126 AELLVNIKDHVLVPEHVLLTPEDKKTLLERYTVKETQLPRIQITDPIARYYGMKRGQVVK 185
Query: 160 VTYSGEITESHVTYRCV 176
+T + E ++TYR V
Sbjct: 186 ITRASETAGRYITYRYV 202
>gi|444321044|ref|XP_004181178.1| hypothetical protein TBLA_0F01160 [Tetrapisispora blattae CBS 6284]
gi|387514222|emb|CCH61659.1| hypothetical protein TBLA_0F01160 [Tetrapisispora blattae CBS 6284]
Length = 215
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 79/157 (50%), Gaps = 3/157 (1%)
Query: 18 GYNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG 77
+ PTE L+ F + GS L + + + + + + E N F
Sbjct: 59 SFQANPTEETLAKFPELGS---LWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNN 115
Query: 78 QDPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL 137
P +L SI + + L+VNIT H L PKH L+D+EK++LLKKY ++E QL
Sbjct: 116 ITPSAMKLVPSIPPATIETFHEASLIVNITHHELVPKHIRLSDEEKKELLKKYRLKESQL 175
Query: 138 PRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
PR+ K D +A Y GL+RG+VVK+ E + +YR
Sbjct: 176 PRIQKADPVALYLGLKRGEVVKIIRKSETAGRYASYR 212
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPS 96
R+ R + + RTV EM++DRGY + EI+LS++DF++ Y R +IS Q++P+
Sbjct: 7 RNVSRLWRTFRTVKEMVRDRGYFITQEEIDLSLEDFKSKYTNSMGTPE-RKNISFQANPT 65
Query: 97 K 97
+
Sbjct: 66 E 66
>gi|212722800|ref|NP_001132429.1| hypothetical protein [Zea mays]
gi|194694360|gb|ACF81264.1| unknown [Zea mays]
gi|414586666|tpg|DAA37237.1| TPA: hypothetical protein ZEAMMB73_455773 [Zea mays]
Length = 206
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+LLVNI HVL P+H +LT ++K+ LL++Y+++E QLPR+ D IA+YYG++RGQVVK
Sbjct: 129 AELLVNIKDHVLVPEHVLLTPEDKKTLLERYTVKETQLPRIQITDPIARYYGMKRGQVVK 188
Query: 160 VTYSGEITESHVTYRCV 176
+T + E ++TYR V
Sbjct: 189 ITRASETAGRYITYRYV 205
>gi|331224607|ref|XP_003324975.1| DNA-directed RNA polymerase II subunit E [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309303965|gb|EFP80556.1| DNA-directed RNA polymerase II subunit E [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 204
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 70/106 (66%), Gaps = 3/106 (2%)
Query: 75 IYGQ--DPDVDRLRISISHQ-SDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYS 131
IY Q P +++ S++ Q + + + +LLVNIT+H++ PKH+V+ +EK+ LL +Y
Sbjct: 99 IYSQAMTPSANKVIASMAQQFTLEAFQEAELLVNITRHIMVPKHEVMKPEEKKALLARYR 158
Query: 132 IEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 177
+++ QLPR+ D +A+YYGL+RGQVV++T E +V+YR
Sbjct: 159 LKDTQLPRIQLSDPVARYYGLKRGQVVRITRPSETAGRYVSYRLAM 204
Score = 37.0 bits (84), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 28/38 (73%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRA 74
R+ R + RT+ E+++DRGY V+ +EIN+S+ +F+A
Sbjct: 5 REVSRLHRVNRTIKELVRDRGYEVSDAEINVSLDEFKA 42
>gi|160331077|ref|XP_001712246.1| rpabc5 [Hemiselmis andersenii]
gi|159765693|gb|ABW97921.1| rpabc5 [Hemiselmis andersenii]
Length = 216
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 58/75 (77%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++L+VNIT+H L PKH++++++E L K+YSI E QLPR+ K+D IA+Y+GL++ Q++K
Sbjct: 138 SELIVNITEHNLVPKHEIISEEEARCLFKRYSIRENQLPRINKRDPIARYFGLQKNQIMK 197
Query: 160 VTYSGEITESHVTYR 174
+ S E + +VTYR
Sbjct: 198 IIRSSETSGRYVTYR 212
>gi|313226453|emb|CBY21598.1| unnamed protein product [Oikopleura dioica]
Length = 210
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 86/194 (44%), Gaps = 65/194 (33%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRA------------------------------- 74
R+T++ M DR Y VA E++ +++ F+A
Sbjct: 14 RKTIMAMCHDRKYLVAQRELDQTLEQFKAEFGSQPSQGQPSRKDLTIIVCHSDDPTDQMF 73
Query: 75 -IYGQDP-----------------DVDRLRISISHQSDPSKRIT---------------- 100
+ +DP ++ R I I PS +
Sbjct: 74 VFFPEDPKVTIKQVKIYCQRMQEENITRALIVIQQSMTPSAKQALDDMAPKYTLESFYEQ 133
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+L++N+T+H L P H VLTD EK +LLK+Y ++E QLPR+ K D +A+Y+G++RGQV K+
Sbjct: 134 ELMINLTEHELVPTHAVLTDDEKNELLKRYKLKESQLPRIQKSDPVARYFGVQRGQVFKI 193
Query: 161 TYSGEITESHVTYR 174
E +VTYR
Sbjct: 194 IRRSETAGRYVTYR 207
>gi|357482711|ref|XP_003611642.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|355512977|gb|AES94600.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 331
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 57/77 (74%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+LLVN+ H L P+HQ+LTD EK+ +L++Y+++E QLPR+ +D +A+YYG++RGQVVK
Sbjct: 254 AELLVNVRYHKLVPEHQLLTDNEKKTVLERYTVKETQLPRIQVRDPVARYYGMKRGQVVK 313
Query: 160 VTYSGEITESHVTYRCV 176
+ E +VTYR V
Sbjct: 314 IIRPSETAGRYVTYRFV 330
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 38/57 (66%)
Query: 43 YLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRI 99
Y R+TV+EML+DR Y V E+N+S ++F+ YG+ + + L I+ + + +PS +I
Sbjct: 137 YRIRKTVMEMLRDRNYLVGDFEVNMSKEEFKEKYGEHMNREDLVINKAKKDNPSDQI 193
Score = 42.4 bits (98), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%)
Query: 43 YLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRI 99
Y R+ V+EML+DR Y V E+ +S Q+F+ YG++ + L I + + +PS +I
Sbjct: 12 YRIRKKVMEMLRDRNYLVGDFEVCMSKQEFKETYGENLKREDLVIKKAKKDNPSDQI 68
>gi|159479030|ref|XP_001697601.1| DNA-directed RNA polymerase II, 23 kDa polypeptide [Chlamydomonas
reinhardtii]
gi|158274211|gb|EDO99994.1| DNA-directed RNA polymerase II, 23 kDa polypeptide [Chlamydomonas
reinhardtii]
Length = 206
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 55/75 (73%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++LLVNIT+HVL P+H++L+ EK LL +Y I+E QLPR+ DA+A+Y GL+RGQVV+
Sbjct: 125 SELLVNITEHVLVPEHRILSPDEKRTLLDRYKIKETQLPRIQASDAVARYLGLQRGQVVR 184
Query: 160 VTYSGEITESHVTYR 174
+ E +VTYR
Sbjct: 185 IVRPSETAGRYVTYR 199
>gi|72109111|ref|XP_783584.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 2 [Strongylocentrotus purpuratus]
gi|390354452|ref|XP_003728337.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 1 [Strongylocentrotus purpuratus]
Length = 210
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 93/208 (44%), Gaps = 65/208 (31%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDP------------- 80
N ++ R + RRT++++ DRGY V E++ +++ F+ +G P
Sbjct: 2 NDEAETYRLWRVRRTIMQLCHDRGYLVTQEELDQTLEQFKEQFGDKPSENRPSRKDLTVL 61
Query: 81 ------------------------------------DVDRLRISISHQSDPSKRIT---- 100
++ R I++ + PS + +
Sbjct: 62 VAHNDDPTDQMFVFFPEEKKVGMKTIKAYCQRMQEENITRAIITVQEKMTPSAKTSLGDM 121
Query: 101 ------------DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQ 148
+LL+NIT+H P+H V+T +EK +LL +Y +++ QLPR+ D +A+
Sbjct: 122 APKYILEQFLEAELLINITEHDFVPEHVVMTGEEKAELLARYKLKDHQLPRIQVGDPVAR 181
Query: 149 YYGLERGQVVKVTYSGEITESHVTYRCV 176
Y+GL+RGQVVK+ E +++YR V
Sbjct: 182 YFGLKRGQVVKIIRPSETAGRYISYRLV 209
>gi|451853318|gb|EMD66612.1| hypothetical protein COCSADRAFT_35119 [Cochliobolus sativus ND90Pr]
Length = 234
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 54/76 (71%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNITKH L PKH +L+DQEK++LL++Y +++ QLPR+ D +A+Y GL RG VVK+
Sbjct: 158 DLLVNITKHELVPKHVLLSDQEKQQLLQRYRLKQTQLPRIQSTDPVAKYLGLRRGAVVKI 217
Query: 161 TYSGEITESHVTYRCV 176
E + +YR V
Sbjct: 218 IRKSETAGRYASYRWV 233
Score = 36.6 bits (83), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 40 LRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG-QDPDVDRLRISISHQ 92
+R + RT EM+ DRGY V ++ +S+++F Y +D + DR R++ S Q
Sbjct: 11 IRLWRVWRTTKEMMNDRGYMVVEDDMTMSLEEFSRRYAREDGEPDRSRLNFSCQ 64
>gi|399218319|emb|CCF75206.1| unnamed protein product [Babesia microti strain RI]
Length = 212
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 54/78 (69%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
T+LLVNITKH L PKH LT +EK LL++Y ++E Q+PR+ D +A+Y+GL +GQVVK
Sbjct: 135 TELLVNITKHELVPKHVPLTAEEKRNLLQRYKVKESQIPRIQSADPVARYFGLAKGQVVK 194
Query: 160 VTYSGEITESHVTYRCVW 177
+ E +VTYR +
Sbjct: 195 IIRPSETAGRYVTYRMCF 212
>gi|84997627|ref|XP_953535.1| DNA-directed RNA polymerase, subunit (RPB5 homologue) [Theileria
annulata strain Ankara]
gi|65304531|emb|CAI76910.1| DNA-directed RNA polymerase, subunit (RPB5 homologue), putative
[Theileria annulata]
Length = 205
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 55/77 (71%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
T+LLVNITKH L PKH LT +EK+ LL+KY ++E Q+PR+ D +A+Y+GL +GQVVK
Sbjct: 128 TELLVNITKHELVPKHIPLTMEEKQNLLQKYKVKESQIPRIQSADPVARYFGLSKGQVVK 187
Query: 160 VTYSGEITESHVTYRCV 176
+ E +VT+R V
Sbjct: 188 IIRPSETAGRYVTFRLV 204
>gi|452004738|gb|EMD97194.1| hypothetical protein COCHEDRAFT_1163800 [Cochliobolus
heterostrophus C5]
Length = 234
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 54/76 (71%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNITKH L PKH +L+DQEK++LL++Y +++ QLPR+ D +A+Y GL RG VVK+
Sbjct: 158 DLLVNITKHELVPKHVLLSDQEKQQLLQRYRLKQTQLPRIQSTDPVAKYLGLRRGAVVKI 217
Query: 161 TYSGEITESHVTYRCV 176
E + +YR V
Sbjct: 218 IRKSETAGRYASYRWV 233
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 40 LRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG-QDPDVDRLRISISHQ 92
+R + RT EM+ DRGY V ++ +S+++F Y +D + DR R++ S Q
Sbjct: 11 IRLWRVWRTTKEMMNDRGYMVVEDDMTMSLEEFSRRYAREDGEPDRSRLNFSCQ 64
>gi|348680008|gb|EGZ19824.1| hypothetical protein PHYSODRAFT_494802 [Phytophthora sojae]
Length = 206
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 52/77 (67%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
T+LLV+IT+H L P H+VL EK LLK+Y I + QLPRM D IA+YYG+ RGQVVK
Sbjct: 129 TELLVDITEHTLVPVHRVLGRDEKAALLKRYRIRDSQLPRMQVTDPIARYYGMTRGQVVK 188
Query: 160 VTYSGEITESHVTYRCV 176
+ E +VTYR V
Sbjct: 189 IIRPSETAGRYVTYRAV 205
>gi|71029810|ref|XP_764548.1| DNA-directed RNA polymerase II [Theileria parva strain Muguga]
gi|68351502|gb|EAN32265.1| DNA-directed RNA polymerase II, putative [Theileria parva]
Length = 205
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 55/77 (71%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
T+LLVNITKH L PKH LT +EK+ LL+KY ++E Q+PR+ D +A+Y+GL +GQVVK
Sbjct: 128 TELLVNITKHELVPKHIPLTMEEKQNLLQKYKVKESQIPRIQSADPVARYFGLSKGQVVK 187
Query: 160 VTYSGEITESHVTYRCV 176
+ E +VT+R V
Sbjct: 188 IIRPSETAGRYVTFRLV 204
>gi|302894285|ref|XP_003046023.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256726950|gb|EEU40310.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 234
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 56/77 (72%), Gaps = 1/77 (1%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNIT H L PKH +L+ EK LLK+Y ++E QLPR+L++D +A+Y GL+RGQVVK+
Sbjct: 158 DLLVNITHHELVPKHVLLSRDEKTALLKRYRLKETQLPRILQRDPVARYLGLKRGQVVKI 217
Query: 161 TYSGEITESHVTYR-CV 176
+ E + +YR CV
Sbjct: 218 IRNSETAGRYASYRLCV 234
Score = 36.2 bits (82), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQ 92
D S++ +R + + RTV EM+ DR Y +A E+ +S+ FR Y +PD R +
Sbjct: 9 DARSKEVVRLWRAWRTVHEMVADREYELAEEEVKISLDRFRDEYC-NPDGSINRAKLQFS 67
Query: 93 SDPSK 97
+ PS+
Sbjct: 68 ARPSE 72
>gi|344230604|gb|EGV62489.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Candida
tenuis ATCC 10573]
gi|344230605|gb|EGV62490.1| hypothetical protein CANTEDRAFT_114816 [Candida tenuis ATCC 10573]
Length = 214
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 73/119 (61%)
Query: 56 RGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKH 115
R + + +SE N S F P ++L +++ S + + +DL+VNIT H L PKH
Sbjct: 93 RNFCIHISERNFSTGIFIYQSSITPSANKLIPTVAPASIETFQESDLVVNITHHELVPKH 152
Query: 116 QVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
L+ EK++LL +Y ++E QLPR+ ++D +A+Y GL+RG+VVK+ E + + +YR
Sbjct: 153 IKLSKGEKKELLDRYRLKESQLPRIQREDPVARYLGLKRGEVVKIIRRSETSGRYASYR 211
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 28/42 (66%)
Query: 32 VDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFR 73
+D R R + + +TV EM++DRGY ++ E+++S+ +FR
Sbjct: 1 MDEADRSMSRLWRTFKTVKEMVRDRGYYISQEELDMSLDEFR 42
>gi|389742519|gb|EIM83705.1| DNA-directed RNA polymerase RPB5 subunit [Stereum hirsutum FP-91666
SS1]
Length = 209
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 54/78 (69%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
DLLVNIT H L P+H VLT +EK+ LL++Y ++E QLPR+ D IA+YYGL R QVVK
Sbjct: 132 ADLLVNITHHKLVPRHDVLTTEEKKMLLERYRLKETQLPRIQLADPIARYYGLRRSQVVK 191
Query: 160 VTYSGEITESHVTYRCVW 177
+T E + + +YR +
Sbjct: 192 ITRPSETSGRYASYRICF 209
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 10/66 (15%)
Query: 47 RTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD-PDVDRLRISISHQSDPSKRITDLLVN 105
RT+ E++KDRGY VA EI++ + F++ Y VDR +++ T+L VN
Sbjct: 17 RTIHELVKDRGYQVADDEIHMDLTTFKSHYANSGGSVDRNQLNF---------FTNLRVN 67
Query: 106 ITKHVL 111
+ +H+
Sbjct: 68 VEEHIF 73
>gi|448114850|ref|XP_004202684.1| Piso0_001533 [Millerozyma farinosa CBS 7064]
gi|359383552|emb|CCE79468.1| Piso0_001533 [Millerozyma farinosa CBS 7064]
Length = 214
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 71/119 (59%)
Query: 56 RGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKH 115
R + + +SE N S F P +L ++S S + + +DL+VNIT H L PKH
Sbjct: 93 RNFCIHISEKNFSTGIFIYQASITPSATKLIPTVSPASIETFQESDLVVNITHHELVPKH 152
Query: 116 QVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
L+ EK++LL +Y ++E QLPR+ + D +A+Y GL+RG+VVK+ E + + +YR
Sbjct: 153 IKLSKDEKKELLDRYRLKESQLPRIQRDDPVARYLGLKRGEVVKIIRRSETSGRYASYR 211
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 32 VDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISH 91
+D+ R R + + +TV EM++DRGY + EI +S+ +FRA + + R+ +
Sbjct: 1 MDDNDRTVTRLWRTFKTVKEMVRDRGYYITQEEIEMSLDEFRAHVCDSMGIPQRRL-MCF 59
Query: 92 QSDPS 96
Q++P+
Sbjct: 60 QANPT 64
>gi|255718861|ref|XP_002555711.1| KLTH0G15598p [Lachancea thermotolerans]
gi|238937095|emb|CAR25274.1| KLTH0G15598p [Lachancea thermotolerans CBS 6340]
Length = 215
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 80/157 (50%), Gaps = 3/157 (1%)
Query: 18 GYNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG 77
+ P E L F + GS L + + + + + +SE N F G
Sbjct: 59 SFQSNPVEEALEKFPNMGS---LWVEFCDEASVGIKTMKNFVIHISEKNFQTGIFVYQNG 115
Query: 78 QDPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL 137
P +L S++ + + L+VNIT H L PKH L+D+EK++LL++Y ++E QL
Sbjct: 116 VTPSAMKLLPSVAPATIETFHEASLVVNITHHELVPKHIKLSDEEKKELLRRYRLKESQL 175
Query: 138 PRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
PR+ + D +A Y GL+RG VVK+ E + + +YR
Sbjct: 176 PRIQRMDPVALYLGLKRGDVVKIIRKSETSGRYASYR 212
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPS 96
R+ R + + +TV EM++DRGY + E++LS++DF+A Y D R +S QS+P
Sbjct: 7 RNVSRLWRAFKTVKEMVRDRGYFITQEEVDLSLEDFKAKYC-DSMGRPQRKMMSFQSNPV 65
Query: 97 KRITDLLVNI 106
+ + N+
Sbjct: 66 EEALEKFPNM 75
>gi|156089419|ref|XP_001612116.1| RNA polymerase Rpb5, N-terminal domain containing protein [Babesia
bovis]
gi|154799370|gb|EDO08548.1| RNA polymerase Rpb5, N-terminal domain containing protein [Babesia
bovis]
Length = 205
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 55/78 (70%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
T+LLVNITKH L PKH LT EK+ LL++Y ++E Q+PR+ D +A+Y+GL +GQVVK
Sbjct: 128 TELLVNITKHELVPKHIPLTADEKQTLLQRYKVKESQIPRIQAADPVARYFGLTKGQVVK 187
Query: 160 VTYSGEITESHVTYRCVW 177
+ E +VT+R V+
Sbjct: 188 IIRPSETAGRYVTFRLVY 205
>gi|414586667|tpg|DAA37238.1| TPA: hypothetical protein ZEAMMB73_455773 [Zea mays]
Length = 117
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+LLVNI HVL P+H +LT ++K+ LL++Y+++E QLPR+ D IA+YYG++RGQVVK
Sbjct: 40 AELLVNIKDHVLVPEHVLLTPEDKKTLLERYTVKETQLPRIQITDPIARYYGMKRGQVVK 99
Query: 160 VTYSGEITESHVTYRCV 176
+T + E ++TYR V
Sbjct: 100 ITRASETAGRYITYRYV 116
>gi|224001668|ref|XP_002290506.1| RPB5,-like protein to RNA polymerase i [Thalassiosira pseudonana
CCMP1335]
gi|220973928|gb|EED92258.1| RPB5,-like protein to RNA polymerase i [Thalassiosira pseudonana
CCMP1335]
Length = 226
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 91/219 (41%), Gaps = 65/219 (29%)
Query: 22 EPTESCLSGFVDNGSRDSLRYYLSR-----RTVLEMLKDRGYAVALSEINLSVQDFRAIY 76
+PTE + S SL SR +TV ML RGY V+ ++ DF +
Sbjct: 6 QPTEPPTANNTPQTSSSSLTPEASRLFRVYKTVSAMLSKRGYMVSREMREMTPFDFTQRF 65
Query: 77 GQDPDVDRLRISISHQSD------------------PSKRITD----------------- 101
G+ P + L I + D P K +TD
Sbjct: 66 GEYPSREGLTILVEKADDETNQLFVFFPEDEKVGVKPIKILTDRMKDENVSNAILVLRGD 125
Query: 102 -------------------------LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 136
LLV+IT+H L P+H VL+ EK++LLK+Y + E Q
Sbjct: 126 ITPFAKQAVLEMSDSFRLEHFKEAELLVDITEHTLVPEHLVLSQNEKQELLKRYRLRETQ 185
Query: 137 LPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRC 175
LPR+ D +A+YYG++RGQVVK+ E +VTYR
Sbjct: 186 LPRIQPNDPVARYYGMKRGQVVKIIRPSETAGRYVTYRI 224
>gi|408398400|gb|EKJ77531.1| hypothetical protein FPSE_02281 [Fusarium pseudograminearum CS3096]
Length = 234
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 56/77 (72%), Gaps = 1/77 (1%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNIT H L PKH +L+ +EK LLK+Y ++E QLPR+L+KD +A+Y GL+RG VVK+
Sbjct: 158 DLLVNITHHELVPKHVLLSREEKIALLKRYRLKETQLPRILQKDPVARYLGLKRGHVVKI 217
Query: 161 TYSGEITESHVTYR-CV 176
+ E + +YR CV
Sbjct: 218 IRNSETAGRYASYRLCV 234
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQ 92
D S++ +R + + RTV EM+ DR Y +A E+ +S+ FR Y +PD R +S
Sbjct: 9 DAKSKEVVRLWRAWRTVHEMVADREYELAEEEVKISLDRFRDEYC-NPDGSINRNKLSFS 67
Query: 93 SDPS 96
+ PS
Sbjct: 68 ARPS 71
>gi|340959991|gb|EGS21172.1| RNA polymerases I, II, and III-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 547
Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/65 (60%), Positives = 50/65 (76%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNIT H L PKH +L+ +EK LLK+Y ++E QLPR+L KD IA+Y GL+RGQVVK+
Sbjct: 158 DLLVNITHHELVPKHILLSREEKAALLKRYRLKETQLPRILSKDPIARYLGLKRGQVVKI 217
Query: 161 TYSGE 165
+ E
Sbjct: 218 IRTSE 222
Score = 39.7 bits (91), Expect = 0.48, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY-GQDPDVDRLRISIS 90
++ R + + RTV EM++DRGY +A E+ +S++ F+A Y +D +R ++ S
Sbjct: 12 KEVTRLWRAWRTVHEMVQDRGYELADEEVKISLERFKAEYTNEDGSPNRAKMQFS 66
>gi|358393858|gb|EHK43259.1| hypothetical protein TRIATDRAFT_301149 [Trichoderma atroviride IMI
206040]
Length = 233
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 56/77 (72%), Gaps = 1/77 (1%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNIT H L P+H +L+ +EK LLK+Y ++E QLPR+L+KD +A+Y GL+RGQVVK+
Sbjct: 157 DLLVNITHHELVPRHVLLSREEKIALLKRYRLKETQLPRILQKDPVARYLGLKRGQVVKI 216
Query: 161 TYSGEITESHVTYR-CV 176
E + +YR CV
Sbjct: 217 IRVSETAGRYASYRLCV 233
Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQ-DPDVDRLRISIS 90
D S++ +R + + RTV EM+ DR Y +A E+++S++ FR Y D V+R ++ S
Sbjct: 8 DAKSKEVVRLWRAWRTVHEMVADREYELAEDEVSISLERFRDEYCHPDGSVNRAKLQFS 66
>gi|297830274|ref|XP_002883019.1| hypothetical protein ARALYDRAFT_341806 [Arabidopsis lyrata subsp.
lyrata]
gi|297328859|gb|EFH59278.1| hypothetical protein ARALYDRAFT_341806 [Arabidopsis lyrata subsp.
lyrata]
Length = 211
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 57/76 (75%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+L+VN+ HV P+HQ LT +EK++ L++Y+++E QLPR+ D IA+Y+GL+RG+VVK+
Sbjct: 132 ELIVNVNHHVFVPEHQALTTEEKQQFLERYTVKENQLPRIHVTDPIARYFGLKRGEVVKI 191
Query: 161 TYSGEITESHVTYRCV 176
T E + +VTYR +
Sbjct: 192 TRQSETSGRYVTYRSL 207
>gi|322706717|gb|EFY98297.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Metarhizium
anisopliae ARSEF 23]
Length = 232
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNIT H L P+H +L+ EK LLK+Y ++E QLPR+L+KD +A+Y GL+RGQVVK+
Sbjct: 156 DLLVNITHHELVPRHVLLSRDEKSALLKRYRLKETQLPRILQKDPVARYLGLKRGQVVKI 215
Query: 161 TYSGEITESHVTYR-CV 176
E + +YR CV
Sbjct: 216 IRVSETAGRYASYRLCV 232
Score = 38.9 bits (89), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY-GQDPDVDRLRISIS 90
D S++ +R + + RTV EM+ DR Y +A E+N+S+ FR Y D V+R ++ S
Sbjct: 7 DAKSKEVVRLWRAWRTVHEMVADREYELAEEEVNISLDRFRDEYCNPDGSVNRSKLQFS 65
>gi|299749820|ref|XP_001836357.2| DNA-directed RNA polymerase I [Coprinopsis cinerea okayama7#130]
gi|298408613|gb|EAU85541.2| DNA-directed RNA polymerase I [Coprinopsis cinerea okayama7#130]
Length = 208
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 55/78 (70%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
DLLVNIT H L P+H+VL+ +EK+ LL++Y +++ QLPR+ D +A+YYGL RGQVVK
Sbjct: 131 ADLLVNITHHTLVPRHEVLSPEEKKTLLERYRLKDTQLPRIQPMDPVARYYGLRRGQVVK 190
Query: 160 VTYSGEITESHVTYRCVW 177
+ E + + +YR +
Sbjct: 191 IIRPSETSGRYASYRICF 208
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDP---DVDRLRISISHQSD 94
++ R + +T+ E++KDRG++V+ EIN+S++ FR +YG + D ++L H+ +
Sbjct: 6 ETARLWKVSKTIHELVKDRGFSVSDEEINMSLERFRQVYGNNMGVIDRNQLNFYTHHRLN 65
Query: 95 PSKRI 99
PS +I
Sbjct: 66 PSDQI 70
>gi|307106700|gb|EFN54945.1| hypothetical protein CHLNCDRAFT_134695 [Chlorella variabilis]
Length = 190
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 56/77 (72%), Gaps = 1/77 (1%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNITKH L P+H++LT +EK+ LL +Y +++ QLPR+ D +A+Y+G+ RGQVV++
Sbjct: 114 ELLVNITKHTLVPQHRILTREEKQTLLDRYKVKDTQLPRIQFSDPVARYFGMTRGQVVRI 173
Query: 161 TYSGEITESHVTYR-CV 176
E +VTYR CV
Sbjct: 174 VRPSETAGRYVTYRLCV 190
>gi|395332226|gb|EJF64605.1| RPB5 subunit of DNA-directed RNA polymerase [Dichomitus squalens
LYAD-421 SS1]
Length = 211
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 57/78 (73%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+DLLVNIT H L P+H++LT ++K++LL+ Y ++E QLPR+ D +A+YYGL+RG VVK
Sbjct: 134 SDLLVNITHHTLVPRHELLTPEQKKELLETYRLKETQLPRIQLADPVARYYGLKRGNVVK 193
Query: 160 VTYSGEITESHVTYRCVW 177
+T E + + +YR +
Sbjct: 194 ITRPSETSGRYASYRICF 211
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG-QDPDVDR--LRISISHQSD 94
+S R + RT+ E++KDRG+ VA EIN+ + FR+ Y Q VDR L +H+ +
Sbjct: 9 ESARLWKVNRTIHELVKDRGFQVADDEINMDLATFRSHYASQSGTVDRSQLNFFTNHRDN 68
Query: 95 PSKRI 99
P +I
Sbjct: 69 PMLQI 73
>gi|322700991|gb|EFY92743.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Metarhizium
acridum CQMa 102]
Length = 250
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNIT H L P+H +L+ EK LLK+Y ++E QLPR+L+KD +A+Y GL+RGQVVK+
Sbjct: 174 DLLVNITHHELVPRHVLLSRDEKSALLKRYRLKETQLPRILQKDPVARYLGLKRGQVVKI 233
Query: 161 TYSGEITESHVTYR-CV 176
E + +YR CV
Sbjct: 234 IRVSETAGRYASYRLCV 250
>gi|403332978|gb|EJY65550.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Oxytricha
trifallax]
Length = 215
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 58/77 (75%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNIT+H L P+H+VL+D+ K +LLKKY +++ QLP++ D IA+YYG++RGQV+K+
Sbjct: 139 ELLVNITEHELVPRHEVLSDKAKHELLKKYRVKDSQLPKIQVDDPIARYYGVKRGQVMKI 198
Query: 161 TYSGEITESHVTYRCVW 177
+ E +VTYR +
Sbjct: 199 VRASETAGRYVTYRLAY 215
Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 43 YLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPS 96
Y R+TVL+MLKDRGY V+ ++ ++++F+A + D L ++ Q DP+
Sbjct: 10 YRVRKTVLQMLKDRGYIVSDKKLKQTIEEFKATFNNTRDSLNLIVTKRQQVDPN 63
>gi|357164319|ref|XP_003580017.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Brachypodium distachyon]
Length = 205
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 56/76 (73%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNI H L P+H +LT ++K+ LL+KY+++E QLPR+ D IA+YYG++RGQVVK+
Sbjct: 129 ELLVNIKNHELVPEHVLLTHEQKKTLLEKYTVKETQLPRIQITDPIARYYGMKRGQVVKI 188
Query: 161 TYSGEITESHVTYRCV 176
T E +VTYR V
Sbjct: 189 TRPSETAGKYVTYRYV 204
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 38/59 (64%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRI 99
R + RRTV+EML+DRGY V ++I LS+++F YG + L I+ + +P+++I
Sbjct: 9 RLFRIRRTVMEMLRDRGYLVVDADIELSMREFIDRYGDPVRREDLVINRVKKDNPNEQI 67
>gi|260943051|ref|XP_002615824.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Clavispora
lusitaniae ATCC 42720]
gi|238851114|gb|EEQ40578.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Clavispora
lusitaniae ATCC 42720]
Length = 287
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 82/156 (52%), Gaps = 3/156 (1%)
Query: 19 YNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQ 78
+ +PT F + GS L + + R + + +SE N S F
Sbjct: 132 FQAQPTPEAAEKFPEMGS---LWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQTSI 188
Query: 79 DPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLP 138
P ++L ++S + + +DL+VNIT H L PKH L+ EK++LL +Y ++E QLP
Sbjct: 189 TPSANKLIPTVSPATIEVFQESDLVVNITHHELVPKHIRLSKPEKKELLDRYRLKESQLP 248
Query: 139 RMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
R+ ++D +A+Y GL+RG VVK+ E + + +YR
Sbjct: 249 RIQREDPVARYLGLKRGDVVKIIRRSETSGRYASYR 284
>gi|67624263|ref|XP_668414.1| DNA-directed RNA polymerase 2 [Cryptosporidium hominis TU502]
gi|54659611|gb|EAL38180.1| DNA-directed RNA polymerase 2 [Cryptosporidium hominis]
gi|323509171|dbj|BAJ77478.1| cgd2_980 [Cryptosporidium parvum]
gi|323509997|dbj|BAJ77891.1| cgd2_980 [Cryptosporidium parvum]
Length = 205
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 54/76 (71%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNITKH L PKH +L+D EK +LL +Y I+E QLPR+ D +A+Y+GL +GQVVK+
Sbjct: 129 ELLVNITKHELVPKHILLSDDEKLQLLDRYKIKETQLPRIQYADPVARYFGLAKGQVVKI 188
Query: 161 TYSGEITESHVTYRCV 176
E +VTYR V
Sbjct: 189 IRPSETAGRYVTYRLV 204
>gi|11994623|dbj|BAB02760.1| RNA polymerase-like protein [Arabidopsis thaliana]
Length = 178
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 86/168 (51%), Gaps = 32/168 (19%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG----------------------- 77
R +L +RT+++MLKDRGY + SEI +++++F YG
Sbjct: 10 RLFLVQRTLMQMLKDRGYLIDGSEITMTLEEFIEKYGDNMKRSLLLLSKLRKMMTMIRAI 69
Query: 78 ---QD-PDVDRLRISISHQSDPSKRI-----TDLLVNITKHVLKPKHQVLTDQEKEKLLK 128
QD R + P I +L+VN+ +HV P+HQ LT +EK+K L+
Sbjct: 70 LVVQDIKAFSRQALVFLGAVYPIFHIEVFQEKELIVNVKEHVFVPEHQALTTEEKQKFLE 129
Query: 129 KYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 176
+ LPR+ D IA+Y+GL+RG+VVK++ E + ++TYR V
Sbjct: 130 RKRTRFVVLPRIHVTDPIARYFGLKRGEVVKISRLSETSGRYITYRYV 177
>gi|358384639|gb|EHK22236.1| hypothetical protein TRIVIDRAFT_84202 [Trichoderma virens Gv29-8]
Length = 233
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 56/77 (72%), Gaps = 1/77 (1%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNIT H L P+H +L+ +EK LLK+Y ++E QLPR+L+KD +A+Y GL+RGQVVK+
Sbjct: 157 DLLVNITHHELVPRHVLLSREEKIALLKRYRLKETQLPRILQKDPVARYLGLKRGQVVKI 216
Query: 161 TYSGEITESHVTYR-CV 176
E + +YR CV
Sbjct: 217 IRVSETAGRYASYRLCV 233
Score = 36.6 bits (83), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQ-DPDVDRLRISIS 90
D S++ +R + + RTV EM+ DR Y +A E+ +S+ FR Y D V+R ++ S
Sbjct: 8 DAKSKEVVRLWRAWRTVHEMVADREYELAEDEVTISLDRFRDEYCHPDGTVNRAKLQFS 66
>gi|171688464|ref|XP_001909172.1| hypothetical protein [Podospora anserina S mat+]
gi|170944194|emb|CAP70304.1| unnamed protein product [Podospora anserina S mat+]
Length = 235
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNIT H L P H +L+ +EK LLK+Y ++E QLPR+L+KD IA+Y GL+RGQVVK+
Sbjct: 159 DLLVNITHHELVPTHILLSREEKMALLKRYRLKETQLPRILQKDPIARYLGLKRGQVVKI 218
Query: 161 TYSGEITESHVTYR-CV 176
E + +YR CV
Sbjct: 219 VRISETAGRYASYRLCV 235
>gi|66358302|ref|XP_626329.1| DNA-directed RNA polymerase 2 [Cryptosporidium parvum Iowa II]
gi|46228002|gb|EAK88922.1| putative DNA-directed RNA polymerase 2 [Cryptosporidium parvum Iowa
II]
Length = 214
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 54/76 (71%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNITKH L PKH +L+D EK +LL +Y I+E QLPR+ D +A+Y+GL +GQVVK+
Sbjct: 138 ELLVNITKHELVPKHILLSDDEKLQLLDRYKIKETQLPRIQYADPVARYFGLAKGQVVKI 197
Query: 161 TYSGEITESHVTYRCV 176
E +VTYR V
Sbjct: 198 IRPSETAGRYVTYRLV 213
>gi|154411936|ref|XP_001579002.1| RNA polymerase Rpb5, N-terminal domain containing protein
[Trichomonas vaginalis G3]
gi|121913204|gb|EAY18016.1| RNA polymerase Rpb5, N-terminal domain containing protein
[Trichomonas vaginalis G3]
Length = 202
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 61/77 (79%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
++++NIT+H L PKH+VLT+ EK+++LK+Y++ E QLPR+L+ D +++Y G++ GQ++K+
Sbjct: 126 EVIINITEHELVPKHEVLTEDEKQEVLKRYNVTETQLPRILRTDPVSRYLGVKPGQLLKI 185
Query: 161 TYSGEITESHVTYRCVW 177
T + + +VTYR V+
Sbjct: 186 TRNSDTAGHYVTYRLVY 202
>gi|340521475|gb|EGR51709.1| predicted protein [Trichoderma reesei QM6a]
Length = 237
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 56/77 (72%), Gaps = 1/77 (1%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNIT H L P+H +L+ +EK LLK+Y ++E QLPR+L+KD +A+Y GL+RGQVVK+
Sbjct: 161 DLLVNITHHELVPRHVLLSREEKIALLKRYRLKETQLPRILQKDPVARYLGLKRGQVVKI 220
Query: 161 TYSGEITESHVTYR-CV 176
E + +YR CV
Sbjct: 221 IRVSETAGRYASYRLCV 237
Score = 37.4 bits (85), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPD 81
D S++ +R + + RTV EM+ DR Y +A E+N+S+ FR Y PD
Sbjct: 8 DAKSKEVVRLWRAWRTVHEMVADREYELAEDEVNISLDRFRDEYCH-PD 55
>gi|429329987|gb|AFZ81746.1| DNA-directed RNA polymerase, putative [Babesia equi]
Length = 205
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 55/77 (71%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
T+LLVNIT+H L PKH LT +EK+ LL++Y ++E Q+PR+ D +A+Y+GL +GQVVK
Sbjct: 128 TELLVNITRHELVPKHVPLTMEEKQNLLQRYKVKENQIPRIQSADPVARYFGLSKGQVVK 187
Query: 160 VTYSGEITESHVTYRCV 176
+ E +VT+R V
Sbjct: 188 IIRPSETAGRYVTFRLV 204
>gi|38344231|emb|CAD41325.2| OJ991113_30.8 [Oryza sativa Japonica Group]
Length = 205
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 57/77 (74%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+LLVNI H L P+H++LT ++K+ LL++Y+++E QLPR+ D IA+YYG++RGQVVK
Sbjct: 128 AELLVNIKDHTLVPEHELLTPEQKKTLLERYTVKETQLPRIQITDPIARYYGMKRGQVVK 187
Query: 160 VTYSGEITESHVTYRCV 176
+ + E +VTYR V
Sbjct: 188 IIRASETAGRYVTYRYV 204
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSD 94
++ R + RRTV++ML+DRGY V +I+L DF A +G D D L S H+ D
Sbjct: 6 ETSRLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFVARFGDPVDRDHLVFS-RHKKD 61
>gi|46136465|ref|XP_389924.1| hypothetical protein FG09748.1 [Gibberella zeae PH-1]
Length = 253
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 54/74 (72%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNIT H L PKH +L+ +EK LLK+Y ++E QLPR+L+KD +A+Y GL+RG VVK+
Sbjct: 162 DLLVNITHHELVPKHVLLSREEKIALLKRYRLKETQLPRILQKDPVARYLGLKRGHVVKI 221
Query: 161 TYSGEITESHVTYR 174
+ E + +YR
Sbjct: 222 IRNSETAGRYASYR 235
>gi|255085448|ref|XP_002505155.1| predicted protein [Micromonas sp. RCC299]
gi|226520424|gb|ACO66413.1| predicted protein [Micromonas sp. RCC299]
Length = 204
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 89/203 (43%), Gaps = 62/203 (30%)
Query: 36 SRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---------------- 79
S R + R+TV +ML RGY VA +E++ F +G+D
Sbjct: 2 SEKKTRLFRIRKTVCKMLNARGYLVAQAELDRDKDSFTEEFGEDPRRDALTLQFDLREDP 61
Query: 80 --------PD--------------------VDRLRISISHQSDPSKRIT----------- 100
PD V+R I + P R +
Sbjct: 62 TQHIFVFFPDEEKVGVKTIKEYAKRMKDEQVNRAIIVVQQSLTPFARQSLLECQAQKFYI 121
Query: 101 ------DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLER 154
+LLVNIT HVL P+H +L+D++K LL +Y ++E QLPR+ D +A+Y+G+ R
Sbjct: 122 EQFQEAELLVNITDHVLVPEHILLSDEQKRVLLDRYKVKETQLPRIQMHDPVARYFGMRR 181
Query: 155 GQVVKVTYSGEITESHVTYR-CV 176
GQVV++ E +VTYR CV
Sbjct: 182 GQVVRIIRPSETAGRYVTYRLCV 204
>gi|296424747|ref|XP_002841908.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638159|emb|CAZ86099.1| unnamed protein product [Tuber melanosporum]
Length = 220
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 56/75 (74%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+DLLVNITKH L P+H +L+ +EK+KLL++Y ++E QLPR+ D +A+YYGL+RG VVK
Sbjct: 143 SDLLVNITKHELVPRHILLSREEKKKLLERYRLKESQLPRIQGADPVARYYGLKRGHVVK 202
Query: 160 VTYSGEITESHVTYR 174
+ E + + +YR
Sbjct: 203 IVRKSETSGRYASYR 217
>gi|353236892|emb|CCA68877.1| probable 25 kD subunit of DNA-directed RNA polymerases I, II and
III [Piriformospora indica DSM 11827]
Length = 211
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 56/78 (71%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
T+LLVNIT+H L P+H++L+ ++K LL++Y ++E QLPR+ D +A+YYGL RGQVVK
Sbjct: 134 TELLVNITQHTLVPQHEILSPEQKRLLLERYRLKETQLPRIQLGDPVARYYGLRRGQVVK 193
Query: 160 VTYSGEITESHVTYRCVW 177
+T E + +YR +
Sbjct: 194 ITRPSETAGRYASYRICF 211
>gi|209878710|ref|XP_002140796.1| DNA-directed RNA polymerase 2 [Cryptosporidium muris RN66]
gi|209556402|gb|EEA06447.1| DNA-directed RNA polymerase 2, putative [Cryptosporidium muris
RN66]
Length = 205
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 55/76 (72%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNIT+H L PKH +L+D+EK +LL++Y ++E QLPR+ D +A+Y+GL + QVVK+
Sbjct: 129 ELLVNITRHELVPKHVLLSDEEKSQLLERYKVKETQLPRIQHADPVARYFGLAKSQVVKI 188
Query: 161 TYSGEITESHVTYRCV 176
E +VTYR V
Sbjct: 189 IRPSETAGRYVTYRLV 204
>gi|388583908|gb|EIM24209.1| RPB5 subunit of DNA-directed RNA polymerase [Wallemia sebi CBS
633.66]
Length = 207
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 56/78 (71%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++L VNIT H L P+H+VLT +EK+ LL+KY ++ QLPR+L D +A+Y+GLERGQVVK
Sbjct: 130 SELQVNITHHQLVPQHEVLTAEEKKLLLQKYRLKPTQLPRILTSDPVARYFGLERGQVVK 189
Query: 160 VTYSGEITESHVTYRCVW 177
+ E + + +YR +
Sbjct: 190 IIRPSETSGRYASYRICF 207
>gi|330933135|ref|XP_003304060.1| hypothetical protein PTT_16482 [Pyrenophora teres f. teres 0-1]
gi|311319571|gb|EFQ87830.1| hypothetical protein PTT_16482 [Pyrenophora teres f. teres 0-1]
Length = 235
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 54/76 (71%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNITKH L PKH +L+D+EK++LL++Y +++ QLPR+ D +A+Y GL RG VVK+
Sbjct: 159 DLLVNITKHELVPKHVLLSDEEKQQLLQRYRLKQTQLPRIQSTDPVAKYLGLRRGAVVKI 218
Query: 161 TYSGEITESHVTYRCV 176
E + +YR V
Sbjct: 219 IRKSETAGRYASYRWV 234
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 11/78 (14%)
Query: 40 LRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG-QDPDVDRLRISISHQSD---- 94
+R + +T EM+ DRGY V ++N+S+ F Y +D + DR R++ S Q
Sbjct: 12 MRLWRVWKTTKEMMNDRGYMVLEEDMNMSLDQFSRKYAREDGEPDRSRLNFSCQPSEEML 71
Query: 95 ------PSKRITDLLVNI 106
P+K++ + NI
Sbjct: 72 AKYTDAPTKKVPNPTPNI 89
>gi|189192274|ref|XP_001932476.1| DNA-directed RNA polymerases I [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187974082|gb|EDU41581.1| DNA-directed RNA polymerases I [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 235
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 54/76 (71%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNITKH L PKH +L+D+EK++LL++Y +++ QLPR+ D +A+Y GL RG VVK+
Sbjct: 159 DLLVNITKHELVPKHVLLSDEEKQQLLQRYRLKQTQLPRIQSTDPVAKYLGLRRGSVVKI 218
Query: 161 TYSGEITESHVTYRCV 176
E + +YR V
Sbjct: 219 IRKSETAGRYASYRWV 234
Score = 39.3 bits (90), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 11/78 (14%)
Query: 40 LRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG-QDPDVDRLRISISHQSD---- 94
+R + +T EM+ DRGY V ++N+S+ F Y +D + DR R++ S Q
Sbjct: 12 MRLWRVWKTTKEMMNDRGYMVLEEDMNMSLDQFARKYAREDGEPDRSRLNFSCQPSEEML 71
Query: 95 ------PSKRITDLLVNI 106
P+K++ + L NI
Sbjct: 72 AKYTDAPTKKVPNPLPNI 89
>gi|403223518|dbj|BAM41648.1| DNA-directed RNA polymerase [Theileria orientalis strain Shintoku]
Length = 205
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 54/77 (70%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
T+LLVNIT+H L PKH LT EK+ LL+KY ++E Q+PR+ D +A+Y+GL +GQVVK
Sbjct: 128 TELLVNITRHELVPKHIPLTMDEKQNLLQKYKVKESQIPRIQSADPVARYFGLSKGQVVK 187
Query: 160 VTYSGEITESHVTYRCV 176
+ E +VT+R V
Sbjct: 188 IIRPSETAGRYVTFRLV 204
>gi|45190642|ref|NP_984896.1| AER036Wp [Ashbya gossypii ATCC 10895]
gi|54036391|sp|Q757H7.1|RPAB1_ASHGO RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1
gi|44983621|gb|AAS52720.1| AER036Wp [Ashbya gossypii ATCC 10895]
gi|374108119|gb|AEY97026.1| FAER036Wp [Ashbya gossypii FDAG1]
Length = 215
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 70/119 (58%)
Query: 56 RGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKH 115
+ + + + E N F G P +L S++ + + T L+VNIT H L PKH
Sbjct: 94 KNFVIHIGEKNFQTGIFIYQNGITPSALKLLPSVAPATIETFNETALVVNITHHELVPKH 153
Query: 116 QVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
L+D+EK++LLK+Y ++E QLPR+ + D +A Y GL+RG+VVK+ E + + +YR
Sbjct: 154 IKLSDEEKKELLKRYRLKESQLPRIQRMDPVALYLGLKRGEVVKIIRKSETSGRYASYR 212
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQS 93
+ R+ R + + RTV EM++DRGY + E++LS++DF+A Y D R +S QS
Sbjct: 4 DNERNVSRLWRAFRTVKEMVRDRGYFITQEEVDLSLEDFKAKYC-DSMGRPQRKMMSFQS 62
Query: 94 DPSK 97
+P++
Sbjct: 63 NPTE 66
>gi|400596436|gb|EJP64210.1| RNA polymerase Rpb5 domain-containing protein [Beauveria bassiana
ARSEF 2860]
Length = 232
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 54/77 (70%), Gaps = 1/77 (1%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNIT H L P+H +L+ +EK LL++Y ++E QLPR+L KD +A+Y GL RGQVVK+
Sbjct: 156 DLLVNITHHELVPRHVLLSREEKVALLRRYRLKETQLPRILAKDPVARYLGLRRGQVVKI 215
Query: 161 TYSGEITESHVTYR-CV 176
E + +YR CV
Sbjct: 216 IRVSETAGRYASYRLCV 232
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPD--VDRLRISIS 90
D S++ +R + + +TV EM+ DR Y +A EIN+S+ FR+ + +PD V+R ++ S
Sbjct: 7 DARSKEVVRLWRAWKTVHEMVADRDYELAQDEINISLDRFRSEFC-NPDGTVNRAKLQFS 65
>gi|365982519|ref|XP_003668093.1| hypothetical protein NDAI_0A06960 [Naumovozyma dairenensis CBS 421]
gi|343766859|emb|CCD22850.1| hypothetical protein NDAI_0A06960 [Naumovozyma dairenensis CBS 421]
Length = 215
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 80/157 (50%), Gaps = 3/157 (1%)
Query: 18 GYNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG 77
+ PTE ++ F D GS L + + + + + + E N F
Sbjct: 59 SFQSNPTEESIAKFPDMGS---LWAEFCDEESVGVKTMKNFVIHIQEKNFQTGIFVYQTN 115
Query: 78 QDPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL 137
P +L SI + + L+VNIT H L PKH L+++EK++LLK+Y ++E QL
Sbjct: 116 VTPSAMKLVPSIPPATIETFHEASLVVNITHHELVPKHIKLSEEEKKELLKRYRLKESQL 175
Query: 138 PRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
PR+ + D +A Y GL+RG+VVK+ E + + +YR
Sbjct: 176 PRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYR 212
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPS 96
R+ R + + RTV EM++DRGY + E++LS++DF+A Y D R +S QS+P+
Sbjct: 7 RNISRLWRTFRTVKEMVRDRGYFITQEEVDLSLEDFKAKYC-DSMGRPQRKMMSFQSNPT 65
Query: 97 K 97
+
Sbjct: 66 E 66
>gi|255728687|ref|XP_002549269.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240133585|gb|EER33141.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 214
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 84/156 (53%), Gaps = 3/156 (1%)
Query: 19 YNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQ 78
+ +PT L F + GS L + + + R + + ++E N S F
Sbjct: 59 FQAQPTGETLEKFPELGS---LWVEFCDESSVGIKTMRNFCIHITEKNFSTGLFIYQNSI 115
Query: 79 DPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLP 138
P ++L ++S + +DL+VNIT H L PKH L+ EK +LL++Y ++E QLP
Sbjct: 116 TPSANKLIPTVSPSVIEIFQESDLIVNITHHELVPKHLKLSKDEKVELLERYRLKESQLP 175
Query: 139 RMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
R+ ++D +A+Y GL+RG+VVK+ E + + +YR
Sbjct: 176 RIQREDPVARYLGLKRGEVVKIIRRSETSGRYASYR 211
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 30/43 (69%)
Query: 32 VDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRA 74
+D R R + + +TV EM++DRGY ++ EI++++++FR+
Sbjct: 1 MDETDRSISRLFRTFKTVKEMVRDRGYYISQEEIDMTLEEFRS 43
>gi|326430122|gb|EGD75692.1| polymerase II polypeptide E [Salpingoeca sp. ATCC 50818]
Length = 201
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 59/80 (73%), Gaps = 1/80 (1%)
Query: 99 ITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVV 158
IT+L+VNIT+H L P+H VL+ +EK+ LL++Y ++E+QLPRM D +A+Y GL+RGQV
Sbjct: 122 ITELIVNITRHELVPQHVVLSKEEKQALLQRYKLQEQQLPRMKVSDPVARYLGLKRGQVC 181
Query: 159 KVTYSGEITES-HVTYRCVW 177
KV + T +V+YR V+
Sbjct: 182 KVIRNNSPTAGRYVSYRIVF 201
>gi|326503328|dbj|BAJ99289.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 207
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 55/76 (72%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NI H L P+H +LT ++K+ LL+KY+++E QLPR+ D IA+YYG+ RGQVVK+
Sbjct: 131 ELLINIKNHDLVPEHVLLTKEQKKTLLEKYTVKETQLPRIQISDPIARYYGMRRGQVVKI 190
Query: 161 TYSGEITESHVTYRCV 176
T E +VTYR V
Sbjct: 191 TRPSETAGKYVTYRYV 206
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 41/68 (60%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSK 97
++ R + RRTV++ML+DRGY V ++++L++ +F YG D L I+ + + +P +
Sbjct: 7 ETSRLFRVRRTVMQMLRDRGYLVVDADVDLTMGEFVGRYGDPVRRDDLVINRAKKDNPDE 66
Query: 98 RITDLLVN 105
+I N
Sbjct: 67 QIYIFFPN 74
>gi|303282333|ref|XP_003060458.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457929|gb|EEH55227.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 206
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNIT+HVL P+H +L+D EK LL +Y +++ QLPR+ D +A+YYG+ RGQVV++
Sbjct: 130 ELLVNITEHVLVPEHVLLSDAEKRTLLARYKVKDTQLPRIQLHDPVARYYGMRRGQVVRI 189
Query: 161 TYSGEITESHVTYR-CV 176
E +VTYR CV
Sbjct: 190 IRPSETAGRYVTYRLCV 206
Score = 38.9 bits (89), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 47 RTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRI 99
+TV +ML RGY V E+ FR YG DP + L + + + DPS+ I
Sbjct: 15 KTVHKMLNARGYLVQQKELERDKDSFREAYGDDPKRESLTLMLPRRDDPSENI 67
>gi|326501686|dbj|BAK02632.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 207
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 65/102 (63%), Gaps = 9/102 (8%)
Query: 75 IYGQDPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEE 134
+ G PD +L++ + + + LL+NI H L P+H +LT ++K+ LL+KY+++E
Sbjct: 114 LLGNSPD--KLQVQVFQEKE-------LLINIKNHDLVPEHVLLTKEQKKTLLEKYTVKE 164
Query: 135 KQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 176
QLPR+ D +A+YYG+ RGQVVK+T E +VTYR V
Sbjct: 165 TQLPRIQVADPVARYYGMMRGQVVKITRPSETAGKYVTYRYV 206
>gi|428163062|gb|EKX32155.1| hypothetical protein GUITHDRAFT_82572, partial [Guillardia theta
CCMP2712]
Length = 81
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++L VNIT+H L P+H VLT+++K+ LLK+Y ++EK LPR+ K D IA+YYGLER V+K
Sbjct: 4 SELKVNITRHELVPQHYVLTEEDKKTLLKRYHLQEKHLPRIQKSDPIARYYGLERQHVLK 63
Query: 160 VTYSGEITESHVTYRCV 176
+ E +VTYR V
Sbjct: 64 IIRYSETAGKYVTYRLV 80
>gi|156396586|ref|XP_001637474.1| predicted protein [Nematostella vectensis]
gi|156224586|gb|EDO45411.1| predicted protein [Nematostella vectensis]
Length = 207
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 87/168 (51%), Gaps = 3/168 (1%)
Query: 12 EMEGGNGYNGEPTESCLSGFV--DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSV 69
E G G P+ S LS V ++ D + + + + + Y + E N+S
Sbjct: 39 EQFGDRPSEGRPSRSDLSILVAHNDDPTDQMFVFFPEEPKVGIKTIKQYCQRMQEENISR 98
Query: 70 QDFRAIYGQDPDVDRLRISISHQSDPSKRI-TDLLVNITKHVLKPKHQVLTDQEKEKLLK 128
G P + + ++ + + + +L++NIT+H L P+H ++T EK++LL
Sbjct: 99 AVIVVQLGMTPSAKQALVDMAPKYILEQFVEAELMINITEHELVPEHVLMTPDEKQELLL 158
Query: 129 KYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 176
+Y ++E QLPR+ D +A+Y+GL+RGQVVK+ E ++TYR V
Sbjct: 159 RYKLKEHQLPRIQSGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 206
>gi|290878169|emb|CBK39228.1| Rpb5p [Saccharomyces cerevisiae EC1118]
Length = 215
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 3/157 (1%)
Query: 18 GYNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG 77
+ PTE +S F D GS L + + + + + + E N F
Sbjct: 59 SFQANPTEESISKFPDMGS---LWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNN 115
Query: 78 QDPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL 137
P +L SI + + L+VNIT H L PKH L++ EK +LLK+Y ++E QL
Sbjct: 116 ITPSAMKLVPSIPPATIETFNEAALVVNITHHELVPKHIRLSNDEKRELLKRYRLKESQL 175
Query: 138 PRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
PR+ + D +A Y GL+RG+VVK+ E + + +YR
Sbjct: 176 PRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYR 212
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPS 96
R+ R + + RTV EM+KDRGY + E+ L ++DF+A Y D R +S Q++P+
Sbjct: 7 RNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYC-DSMGRPQRKMMSFQANPT 65
Query: 97 K 97
+
Sbjct: 66 E 66
>gi|384249623|gb|EIE23104.1| DNA-directed RNA polymerase II, 23 kDa polypeptide [Coccomyxa
subellipsoidea C-169]
Length = 202
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+LL+NIT+HVL P+H +LT +EK LL +Y +++ QLPR+ D +A+YYG++RG VV+
Sbjct: 125 AELLINITQHVLVPEHHLLTPEEKRTLLDRYKVKDTQLPRIQFHDPVARYYGMQRGHVVR 184
Query: 160 VTYSGEITESHVTYR-CV 176
+ E +VTYR CV
Sbjct: 185 IVRPSETAGRYVTYRLCV 202
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRI 99
R Y R+T LEML DRGY +A + ++ + F+ +G DP D L + Q DP+++I
Sbjct: 6 RLYRIRKTCLEMLHDRGYLIAQDDRQMTKEGFKDRFGDDPRKDDLTVLAPKQDDPTEQI 64
>gi|255941598|ref|XP_002561568.1| Pc16g12690 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586191|emb|CAP93939.1| Pc16g12690 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 234
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNIT+H L PKH +L+ +EK KLL++Y ++E QLPR+ D +A+Y GL RGQVVK+
Sbjct: 158 DLLVNITRHELVPKHVLLSPEEKAKLLERYRLKESQLPRIQISDPVARYLGLRRGQVVKI 217
Query: 161 TYSGEITESHVTYRCV 176
E + +YR V
Sbjct: 218 IRKSETAGRYASYRWV 233
Score = 42.0 bits (97), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRI 87
R+ R + + RTV E+L DRGY V+ +E+ L ++DFRA Y PD +++I
Sbjct: 11 AEREMTRLWRTFRTVYELLADRGYEVSDNELLLPLEDFRAKYSDPLGYPDRTKMKI 66
>gi|388855814|emb|CCF50598.1| probable 25 kD subunit of DNA-directed RNA polymerases I, II and
III [Ustilago hordei]
Length = 236
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 54/73 (73%)
Query: 102 LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVT 161
LLVNIT H L PKH+ L QEK++LL +Y ++E QLPR+ + D +A+Y+GL+RGQVVK+
Sbjct: 133 LLVNITHHHLVPKHEPLYPQEKKELLARYRLKETQLPRIQQADPVARYFGLQRGQVVKII 192
Query: 162 YSGEITESHVTYR 174
S E + + +YR
Sbjct: 193 RSSETSGRYCSYR 205
Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY---GQDPDVDRLRISISHQS 93
R+++R + RT+ E+++DRGY VA EIN+ ++ F++ Y G D +L H
Sbjct: 5 RETVRLWRVNRTIHELVRDRGYQVADDEINIDLETFKSEYAPTGGSVDRTKLNFFTEHSE 64
Query: 94 DPSKRI 99
++R+
Sbjct: 65 HENQRL 70
>gi|340377807|ref|XP_003387420.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Amphimedon queenslandica]
Length = 210
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 89/172 (51%), Gaps = 3/172 (1%)
Query: 8 DSSMEMEGGNGYNGEPTESCLSGFV--DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEI 65
D E G +G P+ + LS V ++ D + + + + + Y + E
Sbjct: 38 DQFKEQFGERPNDGHPSRNDLSILVAHNDDPTDQMFVFFPEDPKVGIKTIKQYCGRMQEE 97
Query: 66 NLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRI-TDLLVNITKHVLKPKHQVLTDQEKE 124
N+S G P + + ++ + + + +L++NIT+H L P+H V+T +EK
Sbjct: 98 NISRAIIVVQQGMTPSAKQALVDMAPKYILEQFMEAELMINITEHELVPEHIVMTTEEKR 157
Query: 125 KLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 176
+LL +Y ++E QLP++ D +A+YYGL+RGQVVK+ E +VTYR V
Sbjct: 158 ELLARYKLKEHQLPKIQSGDPVARYYGLKRGQVVKIIRPSETAGRYVTYRLV 209
>gi|213405090|ref|XP_002173317.1| DNA-directed RNA polymerase I [Schizosaccharomyces japonicus
yFS275]
gi|212001364|gb|EEB07024.1| DNA-directed RNA polymerase I [Schizosaccharomyces japonicus
yFS275]
Length = 211
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 91/202 (45%), Gaps = 64/202 (31%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFR---------------AIYGQDPD 81
R+ ++ + +TV +++ DRGYAV+ SE+ L++ FR + Y + P
Sbjct: 7 RNIVKVFRVWKTVHQLVHDRGYAVSQSELELTLDQFRAMHCGMGRNLDRSTLSFYAKPPP 66
Query: 82 -VDRLRISISHQSDPSKRI----------------------------------------- 99
D+ I + +PS I
Sbjct: 67 GSDKGTIYVEFAKEPSVGIKEMRTFVHTLGDHNHKTGILIYANNMTPSATKIISTVTGQF 126
Query: 100 -------TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGL 152
+DL+VNIT H L PKH +LT +EK++LL +Y + E QLPR+ D +A+Y GL
Sbjct: 127 TIETFQESDLIVNITHHELVPKHVLLTPEEKKELLDRYKLRETQLPRIQMADPVARYLGL 186
Query: 153 ERGQVVKVTYSGEITESHVTYR 174
+RGQVVK+ E + + +YR
Sbjct: 187 KRGQVVKIVRRSETSGRYNSYR 208
>gi|67516941|ref|XP_658356.1| hypothetical protein AN0752.2 [Aspergillus nidulans FGSC A4]
gi|40746238|gb|EAA65394.1| hypothetical protein AN0752.2 [Aspergillus nidulans FGSC A4]
gi|259488970|tpe|CBF88854.1| TPA: RNA polymerase subunit (AFU_orthologue; AFUA_1G14110)
[Aspergillus nidulans FGSC A4]
Length = 235
Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNIT+H L PKH +L+ +EK KLL++Y ++E QLPR+ D +A+Y GL RGQVVK+
Sbjct: 159 DLLVNITRHELVPKHVLLSPEEKSKLLQRYRLKESQLPRIQVSDPVARYLGLRRGQVVKI 218
Query: 161 TYSGEITESHVTYRCV 176
E + +YR V
Sbjct: 219 IRKSETAGRYASYRWV 234
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 32 VDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY 76
D+ R+++R + + RTV EML+DRGY V E+ + + +F+ Y
Sbjct: 9 ADDAERETIRVWRTWRTVFEMLQDRGYEVTEEEVKIDLDEFKRKY 53
>gi|403218074|emb|CCK72566.1| hypothetical protein KNAG_0K02020 [Kazachstania naganishii CBS
8797]
Length = 215
Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 79/157 (50%), Gaps = 3/157 (1%)
Query: 18 GYNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG 77
+ P E ++ F D GS L + + + + + + E N + F
Sbjct: 59 SFQANPMEEAIAKFPDMGS---LWVEFCDEPSVGVKTMKNFVIHIQEKNYQIGIFVYQNN 115
Query: 78 QDPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL 137
P +L SI + + T L+VNIT H L PKH L+ EK++LLK+Y ++E QL
Sbjct: 116 VTPSAMKLVPSIPPATIETFHETSLVVNITHHELVPKHIKLSTDEKKELLKRYRLKESQL 175
Query: 138 PRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
PR+ + D +A Y GL+RG+VVK+ E + + +YR
Sbjct: 176 PRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYR 212
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY 76
R+ R + + RT+ EM+KDRGY + E+ LS++DF+ Y
Sbjct: 7 RNVRRLWRTFRTIKEMVKDRGYFITQEEVELSLEDFKVKY 46
>gi|402589264|gb|EJW83196.1| DNA-directed RNA polymerase I [Wuchereria bancrofti]
Length = 191
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 56/76 (73%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+L+VNIT+H L P+H V+T++EK +LL +Y +++ QLPR+ + D +A+Y+GL RGQVVK+
Sbjct: 115 ELMVNITEHELVPEHVVMTNEEKNELLGRYKLKDTQLPRIQQSDPVARYFGLRRGQVVKI 174
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 175 IRPSETAGRYITYRLV 190
>gi|1680605|gb|AAC60556.1|S59774_1 RNA polymerase subunit [Saccharomyces cerevisiae]
Length = 215
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 3/157 (1%)
Query: 18 GYNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG 77
+ PTE +S F D GS L + + + + + + E N F
Sbjct: 59 SFQANPTEESISKFPDMGS---LWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNN 115
Query: 78 QDPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL 137
P +L SI + + L+VNIT H L PKH L+ EK +LLK+Y ++E QL
Sbjct: 116 ITPSAMKLVPSIPPATIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQL 175
Query: 138 PRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
PR+ + D +A Y GL+RG+VVK+ E + + +YR
Sbjct: 176 PRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYR 212
Score = 39.3 bits (90), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPS 96
R+ R + + RTV EM+KDRGY + E+ ++DF+A Y D R +S Q++P+
Sbjct: 7 RNISRLWRAFRTVKEMVKDRGYFITQEEVEWPLEDFKAKYC-DSMGRPQRKMMSFQANPT 65
Query: 97 K 97
+
Sbjct: 66 E 66
>gi|162606200|ref|XP_001713615.1| RNA polymerase I, II and III 24.3 kDa subunit [Guillardia theta]
gi|13794535|gb|AAK39910.1|AF165818_118 RNA polymerase I, II and III 24.3 kDa subunit [Guillardia theta]
Length = 214
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 88/158 (55%), Gaps = 14/158 (8%)
Query: 23 PTESCLSGFVDNGSRDSLRYYL-SRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPD 81
P L FV+ G +D + + S R E +K+ G++ L +N + P
Sbjct: 67 PENRILIVFVE-GEKDKMNIGVKSIRLFCERIKNEGFSRVLMILNGKLT---------PH 116
Query: 82 VDRLRISISHQSDPSKRITD--LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPR 139
+ SI+ +D + ++ L+VNIT H+L PKH++L+ E + LL++YSI+ LP+
Sbjct: 117 AKQAVSSINSNNDLIEYFSENELIVNITHHMLVPKHEILSKNESKSLLERYSIKFDHLPK 176
Query: 140 MLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR-CV 176
+LK D +A+Y GL+R ++VK+T E + +TYR C+
Sbjct: 177 ILKNDPVAKYLGLQRSEIVKITRVSETSGKFITYRICI 214
Score = 36.6 bits (83), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALS--EINLSVQDFRAIYGQDPDVDR--LRISI 89
N ++ + RRTVL+M++DRGY V S ++N+S F Y ++ + R L I
Sbjct: 2 NDDKNIQHLFKVRRTVLQMIRDRGYVVFDSKDDLNISRSSFEEFYMKNHAICRKSLEIKR 61
Query: 90 SHQSDPSKRITDLLV 104
+P RI + V
Sbjct: 62 PRWDNPENRILIVFV 76
>gi|44890007|emb|CAF32125.1| DNA-directed RNA polymerase, putative [Aspergillus fumigatus]
Length = 220
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNIT+H L PKH +L+ +EK+ LL++Y ++E QLPR+ D +A+Y GL RGQVVK+
Sbjct: 144 DLLVNITRHELVPKHVLLSPEEKKNLLQRYRLKESQLPRIQVSDPVARYLGLRRGQVVKI 203
Query: 161 TYSGEITESHVTYRCV 176
E + +YR V
Sbjct: 204 IRKSETAGRYASYRWV 219
>gi|6319630|ref|NP_009712.1| Rpb5p [Saccharomyces cerevisiae S288c]
gi|133338|sp|P20434.1|RPAB1_YEAST RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=ABC27; AltName: Full=DNA-directed
RNA polymerases I, II, and III 27 kDa polypeptide
gi|9257127|pdb|1DZF|A Chain A, Rpb5 From S.Cerevisiae
gi|14278327|pdb|1I3Q|E Chain E, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
gi|14278338|pdb|1I50|E Chain E, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
gi|14278368|pdb|1I6H|E Chain E, Rna Polymerase Ii Elongation Complex
gi|20150716|pdb|1K83|E Chain E, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
gi|30749620|pdb|1NIK|E Chain E, Wild Type Rna Polymerase Ii
gi|30749741|pdb|1NT9|E Chain E, Complete 12-Subunit Rna Polymerase Ii
gi|34810557|pdb|1PQV|E Chain E, Rna Polymerase Ii-Tfiis Complex
gi|46015418|pdb|1R5U|E Chain E, Rna Polymerase Ii Tfiib Complex
gi|46015783|pdb|1SFO|E Chain E, Rna Polymerase Ii Strand Separated Elongation Complex
gi|56965914|pdb|1R9S|E Chain E, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
gi|56965926|pdb|1R9T|E Chain E, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
gi|56966110|pdb|1TWA|E Chain E, Rna Polymerase Ii Complexed With Atp
gi|56966124|pdb|1TWC|E Chain E, Rna Polymerase Ii Complexed With Gtp
gi|56966134|pdb|1TWF|E Chain E, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
gi|56966144|pdb|1TWG|E Chain E, Rna Polymerase Ii Complexed With Ctp
gi|56966154|pdb|1TWH|E Chain E, Rna Polymerase Ii Complexed With 2'datp
gi|58177168|pdb|1WCM|E Chain E, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679448|pdb|1Y1W|E Chain E, Complete Rna Polymerase Ii Elongation Complex
gi|61679465|pdb|1Y77|E Chain E, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679506|pdb|1Y1V|E Chain E, Refined Rna Polymerase Ii-tfiis Complex
gi|61679519|pdb|1Y1Y|E Chain E, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754247|pdb|2B63|E Chain E, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590858|pdb|2B8K|E Chain E, 12-Subunit Rna Polymerase Ii
gi|122920064|pdb|2E2H|E Chain E, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
gi|122920079|pdb|2E2I|E Chain E, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
gi|122920094|pdb|2E2J|E Chain E, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
gi|122921033|pdb|2NVQ|E Chain E, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
gi|122921069|pdb|2NVT|E Chain E, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
gi|122921085|pdb|2NVX|E Chain E, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
gi|122921100|pdb|2NVY|E Chain E, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
gi|122921112|pdb|2NVZ|E Chain E, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
gi|134104678|pdb|2JA5|E Chain E, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
gi|134104693|pdb|2JA6|E Chain E, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
gi|134104714|pdb|2JA7|E Chain E, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104726|pdb|2JA7|Q Chain Q, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104738|pdb|2JA8|E Chain E, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
gi|146387187|pdb|2YU9|E Chain E, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Utp
gi|160877777|pdb|2R7Z|E Chain E, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172231|pdb|2R92|E Chain E, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172244|pdb|2R93|E Chain E, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613466|pdb|2VUM|E Chain E, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|194368737|pdb|3CQZ|E Chain E, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
Complex With The Inhibitor Alpha-Amanitin
gi|224983594|pdb|3FKI|E Chain E, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|239781919|pdb|3GTG|E Chain E, Backtracked Rna Polymerase Ii Complex With 12mer Rna
gi|239781932|pdb|3GTJ|E Chain E, Backtracked Rna Polymerase Ii Complex With 13mer Rna
gi|239781945|pdb|3GTK|E Chain E, Backtracked Rna Polymerase Ii Complex With 18mer Rna
gi|239781958|pdb|3GTL|E Chain E, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
gi|239781971|pdb|3GTM|E Chain E, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
gi|239781985|pdb|3GTO|E Chain E, Backtracked Rna Polymerase Ii Complex With 15mer Rna
gi|239781998|pdb|3GTP|E Chain E, Backtracked Rna Polymerase Ii Complex With 24mer Rna
gi|239782011|pdb|3GTQ|E Chain E, Backtracked Rna Polymerase Ii Complex Induced By Damage
gi|240104515|pdb|3H3V|F Chain F, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839445|pdb|3HOU|E Chain E, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839460|pdb|3HOU|Q Chain Q, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839475|pdb|3HOV|E Chain E, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839490|pdb|3HOW|E Chain E, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839505|pdb|3HOX|E Chain E, Complete Rna Polymerase Ii Elongation Complex V
gi|254839520|pdb|3HOY|E Chain E, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839535|pdb|3HOZ|E Chain E, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
gi|257471950|pdb|3I4M|E Chain E, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471965|pdb|3I4N|E Chain E, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
gi|266618769|pdb|3K1F|E Chain E, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|269914555|pdb|3K7A|E Chain E, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|295982478|pdb|3M3Y|E Chain E, Rna Polymerase Ii Elongation Complex C
gi|295982491|pdb|3M4O|E Chain E, Rna Polymerase Ii Elongation Complex B
gi|325053967|pdb|3PO2|E Chain E, Arrested Rna Polymerase Ii Elongation Complex
gi|325053982|pdb|3PO3|E Chain E, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634542|pdb|3QT1|E Chain E, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|343197459|pdb|3RZD|E Chain E, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
gi|343197471|pdb|3RZO|E Chain E, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
gi|343197483|pdb|3S14|E Chain E, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
gi|343197495|pdb|3S15|E Chain E, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
gi|343197507|pdb|3S16|E Chain E, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
gi|343197519|pdb|3S17|E Chain E, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
gi|343197531|pdb|3S1M|E Chain E, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
gi|343197543|pdb|3S1N|E Chain E, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
gi|343197555|pdb|3S1Q|E Chain E, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
gi|343197567|pdb|3S1R|E Chain E, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
gi|343197579|pdb|3S2D|E Chain E, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
gi|343781200|pdb|3S2H|E Chain E, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
gi|353251637|pdb|3J0K|E Chain E, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
gi|357380840|pdb|4A3C|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546294|pdb|4A3B|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546312|pdb|4A3D|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546329|pdb|4A3E|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546346|pdb|4A3F|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546363|pdb|4A3J|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546380|pdb|4A3K|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546396|pdb|4A3L|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546413|pdb|4A3M|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977883|pdb|4A3G|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977898|pdb|4A3I|E Chain E, Rna Polymerase Ii Binary Complex With Dna
gi|380764983|pdb|4A93|E Chain E, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
gi|414145450|pdb|4BBR|E Chain E, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145463|pdb|4BBS|E Chain E, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|287822|emb|CAA37381.1| RNA polymerase RPB5 subunit [Saccharomyces cerevisiae]
gi|396754|emb|CAA50472.1| DNA-directed RNA polymerase [Saccharomyces cerevisiae]
gi|536484|emb|CAA85113.1| RPB5 [Saccharomyces cerevisiae]
gi|151946543|gb|EDN64765.1| 25 kDa RNA polymerase subunit [Saccharomyces cerevisiae YJM789]
gi|190408693|gb|EDV11958.1| 25 kDa RNA polymerase subunit [Saccharomyces cerevisiae RM11-1a]
gi|207347621|gb|EDZ73732.1| YBR154Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256270199|gb|EEU05422.1| Rpb5p [Saccharomyces cerevisiae JAY291]
gi|285810484|tpg|DAA07269.1| TPA: Rpb5p [Saccharomyces cerevisiae S288c]
gi|323334603|gb|EGA75977.1| Rpb5p [Saccharomyces cerevisiae AWRI796]
gi|323338690|gb|EGA79906.1| Rpb5p [Saccharomyces cerevisiae Vin13]
gi|323356099|gb|EGA87904.1| Rpb5p [Saccharomyces cerevisiae VL3]
gi|349576528|dbj|GAA21699.1| K7_Rpb5p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392300997|gb|EIW12086.1| Rpb5p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 215
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 3/157 (1%)
Query: 18 GYNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG 77
+ PTE +S F D GS L + + + + + + E N F
Sbjct: 59 SFQANPTEESISKFPDMGS---LWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNN 115
Query: 78 QDPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL 137
P +L SI + + L+VNIT H L PKH L+ EK +LLK+Y ++E QL
Sbjct: 116 ITPSAMKLVPSIPPATIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQL 175
Query: 138 PRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
PR+ + D +A Y GL+RG+VVK+ E + + +YR
Sbjct: 176 PRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYR 212
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPS 96
R+ R + + RTV EM+KDRGY + E+ L ++DF+A Y D R +S Q++P+
Sbjct: 7 RNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYC-DSMGRPQRKMMSFQANPT 65
Query: 97 K 97
+
Sbjct: 66 E 66
>gi|452840713|gb|EME42651.1| hypothetical protein DOTSEDRAFT_73472 [Dothistroma septosporum
NZE10]
Length = 228
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 68/120 (56%), Gaps = 1/120 (0%)
Query: 58 YAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQV 117
+A LSE N F + P ++ SI R DLLVNI+KH L PKH +
Sbjct: 109 FAQVLSEKNYYTGIFVSAVAPTPAAMKIIPSILPTVMEIFREEDLLVNISKHELVPKHVL 168
Query: 118 LTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR-CV 176
L+ +EK+ LL++Y ++E QLPR+ D +A+Y GL RGQVVK+ E + +YR C+
Sbjct: 169 LSPEEKKGLLERYRLKETQLPRIRWDDPMAKYLGLRRGQVVKIIRKSETAGRYASYRWCI 228
Score = 37.0 bits (84), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQ 92
D SR+ R + RT +M DRGY + E N+S+ DFR Y + + R ++
Sbjct: 4 DEVSRELSRLWRVLRTTKQMCADRGYELTEEECNISLDDFRQQYADETGAPQ-RTRMAFT 62
Query: 93 SDPSKRI 99
+ PS+ +
Sbjct: 63 ARPSENM 69
>gi|312095335|ref|XP_003148322.1| RPB-5 protein [Loa loa]
gi|307756513|gb|EFO15747.1| DNA-directed RNA polymerase I [Loa loa]
Length = 211
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 56/76 (73%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+L+VNIT+H L P+H V+T++EK +LL +Y +++ QLPR+ + D +A+Y+GL RGQVVK+
Sbjct: 135 ELMVNITEHELVPEHVVMTNEEKNELLGRYKLKDTQLPRIQQSDPVARYFGLRRGQVVKI 194
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 195 IRPSETAGRYITYRLV 210
>gi|302683883|ref|XP_003031622.1| hypothetical protein SCHCODRAFT_55942 [Schizophyllum commune H4-8]
gi|300105315|gb|EFI96719.1| hypothetical protein SCHCODRAFT_55942 [Schizophyllum commune H4-8]
Length = 210
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 53/78 (67%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
DLLVNIT H L P+H VL +EK +LL++Y ++E QLPR+ D +A+Y+GL RGQVVK
Sbjct: 133 ADLLVNITHHTLVPQHIVLKPEEKRELLERYRLKETQLPRIQIADPVARYFGLRRGQVVK 192
Query: 160 VTYSGEITESHVTYRCVW 177
+ E + + +YR +
Sbjct: 193 IIRPSETSGRYASYRICF 210
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG-QDPDVDR--LRISISHQSDPSK 97
R + RT+ E++KDRG+ VA EINLS+ DF++ Y Q VDR L +H+ D +
Sbjct: 11 RLWKVNRTIHELVKDRGFQVADYEINLSLDDFKSQYASQSRSVDRNQLNFFTNHRDDTTD 70
Query: 98 RI 99
+I
Sbjct: 71 QI 72
>gi|198427419|ref|XP_002130595.1| PREDICTED: similar to 25-kDa subunit RNA polymerase [Ciona
intestinalis]
Length = 210
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 55/76 (72%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H VLT +EK +LL +Y +++ QLPR+ D +A+Y+GL+RGQVVK+
Sbjct: 134 ELLINITEHELVPEHVVLTPEEKSELLTRYKLKDHQLPRIQAGDPVARYFGLKRGQVVKI 193
Query: 161 TYSGEITESHVTYRCV 176
E +VTYR V
Sbjct: 194 VRPSETAGRYVTYRLV 209
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ R + R+TV+++ DRGY V E++ S+++F+ +G P R L I ++H
Sbjct: 6 ETYRLWRIRKTVMQLCHDRGYLVTQHELDQSLEEFKEEFGDKPSERRPGRQDLTILVAHN 65
Query: 93 SDPSKRI 99
DP+ ++
Sbjct: 66 DDPTDQM 72
>gi|407928431|gb|EKG21288.1| RNA polymerase subunit H/Rpb5 [Macrophomina phaseolina MS6]
Length = 227
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNIT+H L PKH +L+ +EK LL +Y ++E QLPR+ + D +A+Y GL+RGQVVK+
Sbjct: 151 DLLVNITQHELVPKHVLLSAEEKAALLARYRLKESQLPRIQQGDPVARYLGLKRGQVVKI 210
Query: 161 TYSGEITESHVTYRCV 176
E + +YR V
Sbjct: 211 IRKSETAGRYASYRWV 226
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPD-VDRLRISISHQS 93
R++ R + + RT EM+ DRGY ++ SE +++ +FRA +G VDR +++ S +
Sbjct: 9 AEREASRLWRAWRTAHEMIADRGYIMSESEYKITLDEFRAKFGDSSGYVDRKQLAFS--A 66
Query: 94 DPS 96
+PS
Sbjct: 67 NPS 69
>gi|367013608|ref|XP_003681304.1| hypothetical protein TDEL_0D05090 [Torulaspora delbrueckii]
gi|359748964|emb|CCE92093.1| hypothetical protein TDEL_0D05090 [Torulaspora delbrueckii]
Length = 215
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 3/157 (1%)
Query: 18 GYNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG 77
+ PTE ++ F + GS L + + + + + + E N F
Sbjct: 59 SFQSNPTEESITKFPNLGS---LWVEFCDEPTVGVKTMKTFVIHIQEKNFQTGIFVYQNN 115
Query: 78 QDPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL 137
P +L SI + + L+VNIT H L PKH L+++EK++LLK+Y ++E QL
Sbjct: 116 ITPSAMKLVPSIPPATIETFHEASLVVNITHHELVPKHIKLSEEEKKELLKRYRLKESQL 175
Query: 138 PRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
PR+ + D +A Y GL+RG+VVK+ + E + +YR
Sbjct: 176 PRIQRADPVALYLGLKRGEVVKIIRNSETAGRYASYR 212
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPS 96
R+ R + + RT+ EM+KDRGY +A EI LS++DF+ Y D R +S QS+P+
Sbjct: 7 RNISRLWRTFRTMKEMVKDRGYFIAQEEIELSLEDFKVKYC-DSMGRPQRKMMSFQSNPT 65
Query: 97 K 97
+
Sbjct: 66 E 66
>gi|145346274|ref|XP_001417617.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577844|gb|ABO95910.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 205
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
T+LLVNI HVL P+H +L+D +K LL +Y +++ QLPR+ D IA+YYG+ RGQVV+
Sbjct: 128 TELLVNIIDHVLVPEHILLSDDQKRTLLDRYKVKDTQLPRIQMHDPIARYYGMRRGQVVR 187
Query: 160 VTYSGEITESHVTYR-CV 176
+ E +VTYR CV
Sbjct: 188 IIRPSETAGRYVTYRLCV 205
Score = 38.9 bits (89), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRI 99
R + R+T+ +ML RGY V+ E+ + F +G++P + L I + DPS+ I
Sbjct: 8 RLFRVRKTIHKMLAARGYLVSAKELERDIDSFTEDFGEEPKRESLTILAPKRDDPSENI 66
>gi|317137040|ref|XP_003190012.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Aspergillus oryzae RIB40]
Length = 235
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 52/76 (68%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNIT+H L PKH +L+ +EK KLL +Y ++E QLPR+ D +A+Y GL RGQVVK+
Sbjct: 159 DLLVNITRHELVPKHVLLSPEEKAKLLARYRLKESQLPRIQVSDPVARYLGLRRGQVVKI 218
Query: 161 TYSGEITESHVTYRCV 176
E + +YR V
Sbjct: 219 IRRSETAGRYASYRWV 234
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 29 SGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRL 85
SG VD R+ R + + RTV EML+DRGY V E+ +S+++F+ Y PD +++
Sbjct: 7 SGSVD-ADREMTRLWRTWRTVFEMLQDRGYEVTEEEVQISLEEFKQKYSDPLGYPDRNKM 65
Query: 86 RI 87
++
Sbjct: 66 KV 67
>gi|425770508|gb|EKV08978.1| hypothetical protein PDIP_66930 [Penicillium digitatum Pd1]
gi|425771874|gb|EKV10306.1| hypothetical protein PDIG_57390 [Penicillium digitatum PHI26]
Length = 234
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNIT+H L PKH +L+ +EK KLL++Y ++E QLPR+ D +A+Y GL RGQVVK+
Sbjct: 158 DLLVNITRHELVPKHVLLSPEEKGKLLERYRLKESQLPRIQISDPVARYLGLRRGQVVKI 217
Query: 161 TYSGEITESHVTYRCV 176
E + +YR V
Sbjct: 218 IRKSETAGRYASYRWV 233
Score = 43.5 bits (101), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 29 SGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRL 85
S + R+ R + + RTV E+L DRGY V+ +E+ L ++DFRA Y PD ++
Sbjct: 5 SAYSMEAEREMTRLWRTFRTVYELLADRGYEVSDNELVLPLEDFRAKYADPLGYPDRTKM 64
Query: 86 RI 87
+I
Sbjct: 65 KI 66
>gi|70938710|ref|XP_739995.1| DNA-directed RNA polymerase 2 [Plasmodium chabaudi chabaudi]
gi|56517394|emb|CAH79759.1| DNA-directed RNA polymerase 2, putative [Plasmodium chabaudi
chabaudi]
Length = 126
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 52/77 (67%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
T+LLVNITKH L PKH LT EK LL++Y I+E +LPR+ D + +Y+GL +GQVVK
Sbjct: 49 TELLVNITKHELVPKHIPLTSDEKRNLLQRYKIKENKLPRIQDVDPVCRYFGLSKGQVVK 108
Query: 160 VTYSGEITESHVTYRCV 176
+ E +VTYR V
Sbjct: 109 IIRPSETAGRYVTYRLV 125
>gi|389584405|dbj|GAB67137.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Plasmodium
cynomolgi strain B]
Length = 205
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 52/77 (67%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
T+LLVNITKH L PKH LT EK LL++Y I+E +LPR+ D + +Y+GL +GQVVK
Sbjct: 128 TELLVNITKHELVPKHIPLTSDEKRNLLQRYKIKENKLPRIQDVDPVCRYFGLAKGQVVK 187
Query: 160 VTYSGEITESHVTYRCV 176
+ E +VTYR V
Sbjct: 188 IIRPSETAGRYVTYRLV 204
>gi|367006695|ref|XP_003688078.1| hypothetical protein TPHA_0M00690 [Tetrapisispora phaffii CBS 4417]
gi|357526385|emb|CCE65644.1| hypothetical protein TPHA_0M00690 [Tetrapisispora phaffii CBS 4417]
Length = 215
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 78/157 (49%), Gaps = 3/157 (1%)
Query: 18 GYNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG 77
+ PTE L F + GS L + + + + + + E N F
Sbjct: 59 SFQANPTEESLEKFPETGS---LWVEFCDEPSVGVKTMKNFVIHIQEKNYQTGIFVYQTN 115
Query: 78 QDPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL 137
P +L SI + + L+VNIT H L PKH L+++EK+ LLK+Y ++E QL
Sbjct: 116 VTPSAMKLVPSIPPATIETFHEASLVVNITHHELVPKHIRLSEEEKKDLLKRYRLKESQL 175
Query: 138 PRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
PR+ + D +A Y GL+RG+VVK+ E + + +YR
Sbjct: 176 PRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYR 212
Score = 40.0 bits (92), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 47 RTVLEMLKDRGYAVALSEINLSVQDFRAIY 76
RTV EM++DRGY ++ EI L ++DFRA Y
Sbjct: 17 RTVKEMVRDRGYFISQDEIELPLEDFRAKY 46
>gi|443703356|gb|ELU00950.1| hypothetical protein CAPTEDRAFT_226435 [Capitella teleta]
Length = 210
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 55/77 (71%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+LL+NIT+H L P+H +LT +EK +LL +Y ++E QLPR+ + D +A+Y+GL+RG VVK
Sbjct: 133 AELLINITEHTLVPEHVLLTPEEKAELLTRYKLKESQLPRIQQGDPVARYFGLKRGSVVK 192
Query: 160 VTYSGEITESHVTYRCV 176
+ E ++TYR V
Sbjct: 193 IVRPSETAGRYITYRLV 209
>gi|366996969|ref|XP_003678247.1| hypothetical protein NCAS_0I02370 [Naumovozyma castellii CBS 4309]
gi|342304118|emb|CCC71905.1| hypothetical protein NCAS_0I02370 [Naumovozyma castellii CBS 4309]
Length = 215
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 78/157 (49%), Gaps = 3/157 (1%)
Query: 18 GYNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG 77
+ PTE ++ F GS L + + + + + + E N F
Sbjct: 59 SFQANPTEESIAKFPSMGS---LWAEFCDEPSVGVKTMKSFVIHIQEKNFQTGIFVFQTN 115
Query: 78 QDPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL 137
P +L SI + + L+VNIT H L PKH L+++EK +LLK+Y ++E QL
Sbjct: 116 VTPSAMKLVPSIPPATIETFHEASLVVNITHHELVPKHIRLSEEEKRELLKRYRLKESQL 175
Query: 138 PRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
PR+ + D +A Y GL+RG+VVK+ E + + +YR
Sbjct: 176 PRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYR 212
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPS 96
R+ R + + RTV EM++DRGY + E++LS++DF+ Y D R +S Q++P+
Sbjct: 7 RNISRLWRTFRTVKEMVRDRGYFITQEEVDLSLEDFKTKYC-DSMGRPQRKMMSFQANPT 65
Query: 97 K 97
+
Sbjct: 66 E 66
>gi|119495104|ref|XP_001264345.1| RNA polymerase subunit [Neosartorya fischeri NRRL 181]
gi|119412507|gb|EAW22448.1| RNA polymerase subunit [Neosartorya fischeri NRRL 181]
Length = 234
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNIT+H L PKH +L+ +EK+ LL++Y ++E QLPR+ D +A+Y GL RGQVVK+
Sbjct: 158 DLLVNITRHELVPKHVLLSPEEKKNLLQRYRLKESQLPRIQVSDPVARYLGLRRGQVVKI 217
Query: 161 TYSGEITESHVTYRCV 176
E + +YR V
Sbjct: 218 IRKSETAGRYASYRWV 233
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRIS 88
R+ R + + RTV EML DRGY V EI + + +FR Y PD +++IS
Sbjct: 11 ADREMTRLWRTWRTVFEMLADRGYEVTEEEIQIPLDEFRQKYADPVGFPDRTKMKIS 67
>gi|115492143|ref|XP_001210699.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Aspergillus
terreus NIH2624]
gi|114197559|gb|EAU39259.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Aspergillus
terreus NIH2624]
Length = 219
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNIT+H L PKH +L+ +EK++LL +Y ++E QLPR+ D +A+Y GL RGQVVK+
Sbjct: 143 DLLVNITRHELVPKHVLLSPEEKKRLLDRYRLKESQLPRIQVSDPVARYLGLRRGQVVKI 202
Query: 161 TYSGEITESHVTYRCV 176
E + +YR V
Sbjct: 203 IRKSETAGRYASYRWV 218
>gi|12229927|sp|Q9P4B9.1|RPAB1_KLUMA RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1
gi|9651716|gb|AAF91238.1|AF225206_4 RNA polymerase subunit [Kluyveromyces marxianus]
Length = 215
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 80/157 (50%), Gaps = 3/157 (1%)
Query: 18 GYNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG 77
+ PTE + F + GS L + + + + V ++E N F G
Sbjct: 59 SFQSNPTEESIEKFPEMGS---LWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSG 115
Query: 78 QDPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL 137
P +++ + + + L+VNIT H L PKH L+D EK++LLK+Y ++E QL
Sbjct: 116 ITPSANKILPTAAPAVIETFPEASLVVNITHHELVPKHIRLSDAEKKELLKRYRLKESQL 175
Query: 138 PRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
PR+ + D +A Y GL+RG+V+K+ E + + +YR
Sbjct: 176 PRIQRMDPVALYLGLKRGEVIKIIRKSETSGRYASYR 212
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSK 97
R + + RTV EM++DRGY + EI+LS++DF+ Y D R +S QS+P++
Sbjct: 11 RLWRAFRTVKEMVRDRGYFITQEEIDLSLEDFKVKYC-DSMGKPQRKMMSFQSNPTE 66
>gi|363753390|ref|XP_003646911.1| hypothetical protein Ecym_5335 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890547|gb|AET40094.1| hypothetical protein Ecym_5335 [Eremothecium cymbalariae
DBVPG#7215]
Length = 215
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 68/119 (57%)
Query: 56 RGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKH 115
+ + + + E N F G P +L S++ + + L+VNIT H L PKH
Sbjct: 94 KNFVIHIGEKNFQTGIFIYQNGITPSALKLLPSVAPATIETFNEASLVVNITHHELVPKH 153
Query: 116 QVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
L+D+EK +LLK+Y ++E QLPR+ + D +A Y GL+RG+VVK+ E + + +YR
Sbjct: 154 IKLSDEEKRELLKRYRLKESQLPRIQRMDPVALYLGLKRGEVVKIIRKSETSGRYASYR 212
Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQS 93
+ R+ R + + RTV EM++DRGY + EI+L++ DF+A Y D R +S QS
Sbjct: 4 HNERNVSRLWRAFRTVKEMVRDRGYFITQEEIDLALDDFKAKYC-DSMGRPQRKMMSFQS 62
Query: 94 DPSK 97
+P++
Sbjct: 63 NPTE 66
>gi|238488995|ref|XP_002375735.1| RNA polymerase subunit [Aspergillus flavus NRRL3357]
gi|220698123|gb|EED54463.1| RNA polymerase subunit [Aspergillus flavus NRRL3357]
Length = 171
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 52/76 (68%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNIT+H L PKH +L+ +EK KLL +Y ++E QLPR+ D +A+Y GL RGQVVK+
Sbjct: 95 DLLVNITRHELVPKHVLLSPEEKAKLLARYRLKESQLPRIQVSDPVARYLGLRRGQVVKI 154
Query: 161 TYSGEITESHVTYRCV 176
E + +YR V
Sbjct: 155 IRRSETAGRYASYRWV 170
>gi|339250892|ref|XP_003374431.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Trichinella spiralis]
gi|316969258|gb|EFV53386.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Trichinella spiralis]
Length = 211
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 90/170 (52%), Gaps = 13/170 (7%)
Query: 15 GGNGYNGEPTESCLSGFV--DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDF 72
G G+P S LS V + + ++L Y + + + + + L N+S
Sbjct: 46 GDRPSEGKPARSDLSFLVSHEEDAAENLFVYFADEKKVGIKTIKNVCLRLQSENMS---- 101
Query: 73 RAIY-GQDPDVDRLRISISHQSDPSKRI-----TDLLVNITKHVLKPKHQVLTDQEKEKL 126
RAI Q+P R S++ S P R+ +L+VNI +H L P+H +++ +EK++L
Sbjct: 102 RAIMIVQEPMTAIARHSVADLS-PKYRLEQFLEAELMVNIIRHELVPRHVIMSSKEKDEL 160
Query: 127 LKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 176
L +Y I+E QLPR+ D IA+YYG+ RGQV K+ E +V+YR V
Sbjct: 161 LDRYKIKEHQLPRIQSTDPIARYYGVVRGQVFKIIRPSETAGYYVSYRVV 210
>gi|365766868|gb|EHN08357.1| Rpb5p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 215
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 3/157 (1%)
Query: 18 GYNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG 77
+ PTE +S F D GS L + + + + + + E N F
Sbjct: 59 SFQANPTEESISKFPDMGS---LWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNN 115
Query: 78 QDPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL 137
P +L SI + + L+VNIT H L PKH L+ EK +LLK+Y ++E QL
Sbjct: 116 ITPSAMKLVPSIPPATIETFNEAALVVNITHHELVPKHIRLSXDEKRELLKRYRLKESQL 175
Query: 138 PRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
PR+ + D +A Y GL+RG+VVK+ E + + +YR
Sbjct: 176 PRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYR 212
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPS 96
R+ R + + RTV EM+KDRGY + E+ L ++DF+A Y D R +S Q++P+
Sbjct: 7 RNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYC-DSMGRPQRKMMSFQANPT 65
Query: 97 K 97
+
Sbjct: 66 E 66
>gi|326430754|gb|EGD76324.1| hypothetical protein PTSG_01026 [Salpingoeca sp. ATCC 50818]
Length = 207
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 54/77 (70%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+L +N+T+H L PKH VLT+ EK++LL +YSI +LP M + D IA+Y+GL GQVV+
Sbjct: 127 AELAINVTRHRLVPKHDVLTEAEKQQLLDRYSITPDKLPIMQEVDPIARYFGLSHGQVVR 186
Query: 160 VTYSGEITESHVTYRCV 176
+T + E +VTYR V
Sbjct: 187 ITRTSETAGRYVTYRIV 203
>gi|121701167|ref|XP_001268848.1| RNA polymerase subunit [Aspergillus clavatus NRRL 1]
gi|119396991|gb|EAW07422.1| RNA polymerase subunit [Aspergillus clavatus NRRL 1]
Length = 234
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNIT+H L PKH +L+ +EK+ LL++Y ++E QLPR+ D +A+Y GL RGQVVK+
Sbjct: 158 DLLVNITRHELVPKHVLLSPEEKKNLLQRYRLKESQLPRIQVSDPVARYLGLRRGQVVKI 217
Query: 161 TYSGEITESHVTYRCV 176
E + +YR V
Sbjct: 218 IRKSETAGRYASYRWV 233
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRIS 88
R+ R + + RTV EML DRGY V EI + +++FR Y PD +++IS
Sbjct: 11 ADREMTRLWRTWRTVFEMLADRGYEVTEEEIQIPLEEFRHKYSDAVGYPDRTKMKIS 67
>gi|70996052|ref|XP_752781.1| RNA polymerase subunit [Aspergillus fumigatus Af293]
gi|66850416|gb|EAL90743.1| RNA polymerase subunit [Aspergillus fumigatus Af293]
gi|159131535|gb|EDP56648.1| RNA polymerase subunit [Aspergillus fumigatus A1163]
Length = 171
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNIT+H L PKH +L+ +EK+ LL++Y ++E QLPR+ D +A+Y GL RGQVVK+
Sbjct: 95 DLLVNITRHELVPKHVLLSPEEKKNLLQRYRLKESQLPRIQVSDPVARYLGLRRGQVVKI 154
Query: 161 TYSGEITESHVTYRCV 176
E + +YR V
Sbjct: 155 IRKSETAGRYASYRWV 170
>gi|66802850|ref|XP_635268.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
gi|60463617|gb|EAL61802.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
Length = 181
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNIT H L PKH +LT +EK +LL +Y ++E QLPR+ D +A+YYGL RG VVK+
Sbjct: 105 ELLVNITHHQLVPKHILLTKEEKLELLTRYKMKESQLPRIQTNDPVARYYGLSRGHVVKI 164
Query: 161 TYSGEITESHVTYR-CV 176
E ++TYR CV
Sbjct: 165 VRPSETAGRYITYRLCV 181
>gi|182676597|sp|Q54EH2.2|RPAB1_DICDI RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
rpabc1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=RPB5 homolog
Length = 197
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNIT H L PKH +LT +EK +LL +Y ++E QLPR+ D +A+YYGL RG VVK+
Sbjct: 121 ELLVNITHHQLVPKHILLTKEEKLELLTRYKMKESQLPRIQTNDPVARYYGLSRGHVVKI 180
Query: 161 TYSGEITESHVTYR-CV 176
E ++TYR CV
Sbjct: 181 VRPSETAGRYITYRLCV 197
>gi|241017563|gb|ACS66689.1| RNA polymerase II B subunit [Caenorhabditis brenneri]
Length = 211
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 55/77 (71%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+L+VNIT+H L P+H V+T +EK +LL +Y +++ QLPR+ + D +A+Y+GL RGQVVK
Sbjct: 134 AELMVNITEHELVPEHVVMTSEEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRGQVVK 193
Query: 160 VTYSGEITESHVTYRCV 176
+ E ++TYR V
Sbjct: 194 IIRPSETAGRYITYRLV 210
Score = 43.1 bits (100), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ R + R+TVL+M+ DRGY VA E++ + F+ +G P + L I ++H
Sbjct: 7 ETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLGHFKETFGDRPSEKKPARADLTILVAHN 66
Query: 93 SDPSKRITDLLVNITK 108
DP+ ++ + TK
Sbjct: 67 DDPADQMFVFFPDDTK 82
>gi|212533613|ref|XP_002146963.1| RNA polymerase subunit [Talaromyces marneffei ATCC 18224]
gi|210072327|gb|EEA26416.1| RNA polymerase subunit [Talaromyces marneffei ATCC 18224]
Length = 236
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 53/77 (68%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+DLLVNIT H L PKH +L+ +EK +LL++Y ++E QLPR+ D +A+Y GL RGQVVK
Sbjct: 159 SDLLVNITHHELVPKHVLLSAEEKARLLERYRLKESQLPRIQVSDPVARYLGLRRGQVVK 218
Query: 160 VTYSGEITESHVTYRCV 176
+ E + +YR V
Sbjct: 219 IIRKSETAGRYASYRWV 235
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRIS 88
R + + RTV EML+DRGY ++ E+ + +QDF + P +R+ I+
Sbjct: 18 RLWRTWRTVHEMLRDRGYEISEEELKIDLQDFTNKFSDSNGFPSRERMTIA 68
>gi|341885241|gb|EGT41176.1| CBN-RPB-5 protein [Caenorhabditis brenneri]
gi|341885706|gb|EGT41641.1| hypothetical protein CAEBREN_11585 [Caenorhabditis brenneri]
Length = 211
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 55/77 (71%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+L+VNIT+H L P+H V+T +EK +LL +Y +++ QLPR+ + D +A+Y+GL RGQVVK
Sbjct: 134 AELMVNITEHELVPEHVVMTSEEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRGQVVK 193
Query: 160 VTYSGEITESHVTYRCV 176
+ E ++TYR V
Sbjct: 194 IIRPSETAGRYITYRLV 210
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ R + R+TVL+M+ DRGY VA E++ ++ F+ +G P + L I ++H
Sbjct: 7 ETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLEHFKETFGDRPSEKKPARADLTILVAHN 66
Query: 93 SDPSKRITDLLVNITK 108
DP+ ++ + TK
Sbjct: 67 DDPADQMFVFFPDDTK 82
>gi|343424911|emb|CBQ68449.1| probable 25 kD subunit of DNA-directed RNA polymerases I, II and
III [Sporisorium reilianum SRZ2]
Length = 208
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 54/73 (73%)
Query: 102 LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVT 161
LLVNIT H L PKH+ L QEK++LL++Y ++E QLPR+ + D +A+Y+GL+RGQVVK+
Sbjct: 133 LLVNITHHHLVPKHEPLYPQEKKELLQRYRLKETQLPRIQQADPVARYFGLQRGQVVKII 192
Query: 162 YSGEITESHVTYR 174
E + + +YR
Sbjct: 193 RPSETSGRYCSYR 205
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY---GQDPDVDRLRISISHQS 93
R+++R + RT+ E+++DRGY VA EIN+ ++ F+A Y G D +L H
Sbjct: 5 RETVRLWRVNRTIHELVRDRGYQVADDEINVDLETFKAEYAPTGGAVDRTKLNFFTEHSE 64
Query: 94 DPSKRI 99
++R+
Sbjct: 65 HANQRL 70
>gi|320590726|gb|EFX03169.1| RNA polymerase subunit [Grosmannia clavigera kw1407]
Length = 237
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 54/77 (70%), Gaps = 1/77 (1%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNIT H L P H +L+ +EK LL +Y ++E QLPR+ +KD +A+Y GL+RGQVVK+
Sbjct: 161 DLLVNITHHELVPTHVLLSKEEKTALLSRYRLKETQLPRIQQKDPVARYLGLKRGQVVKI 220
Query: 161 TYSGEITESHVTYR-CV 176
+ E + +YR CV
Sbjct: 221 IRTSETAGRYASYRLCV 237
>gi|443896772|dbj|GAC74115.1| hypothetical protein PANT_10d00023 [Pseudozyma antarctica T-34]
Length = 283
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 54/73 (73%)
Query: 102 LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVT 161
LLVNIT H L P+H+ L EK++LL++Y ++E QLPR+ + D +A+Y+GL+RGQVVK+T
Sbjct: 208 LLVNITHHHLVPRHEPLYPDEKKELLQRYRLKETQLPRIQQADPVAKYFGLQRGQVVKIT 267
Query: 162 YSGEITESHVTYR 174
E + + +YR
Sbjct: 268 RPSETSGRYCSYR 280
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY---GQDPDVDRLRISISHQS 93
R+++R + +T+ E+++DRGY VA EIN+ ++ F+A Y G D +L H +
Sbjct: 80 RETVRLWRVNKTIHELVRDRGYQVADDEINIDLESFKAEYAPTGGSVDRTKLNFFTEHSA 139
Query: 94 DPSKRI 99
++R+
Sbjct: 140 HENQRL 145
>gi|242778512|ref|XP_002479254.1| RNA polymerase subunit [Talaromyces stipitatus ATCC 10500]
gi|218722873|gb|EED22291.1| RNA polymerase subunit [Talaromyces stipitatus ATCC 10500]
Length = 236
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 53/77 (68%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+DLLVNIT H L PKH +L+ +EK +LL++Y ++E QLPR+ D +A+Y GL RGQVVK
Sbjct: 159 SDLLVNITHHELVPKHVLLSAEEKARLLERYRLKESQLPRIQVSDPVARYLGLRRGQVVK 218
Query: 160 VTYSGEITESHVTYRCV 176
+ E + +YR V
Sbjct: 219 IIRKSETAGRYASYRWV 235
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG 77
R + + RTV EML+DRGY ++ E+ + QDF +G
Sbjct: 18 RLWRTWRTVHEMLRDRGYEMSEEEVKIDYQDFANKFG 54
>gi|268568358|ref|XP_002640230.1| C. briggsae CBR-RPB-5 protein [Caenorhabditis briggsae]
gi|296439763|sp|A8XGH1.1|RPAB1_CAEBR RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=RPB5 homolog
Length = 211
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 55/77 (71%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+L+VNIT+H L P+H V+T +EK +LL +Y +++ QLPR+ + D +A+Y+GL RGQVVK
Sbjct: 134 AELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRGQVVK 193
Query: 160 VTYSGEITESHVTYRCV 176
+ E ++TYR V
Sbjct: 194 IIRPSETAGRYITYRLV 210
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ R + R+TVL+M+ DRGY VA E++ ++ F+ +G P + L I ++H
Sbjct: 7 ETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLETFKETFGDRPSEKKPARSDLTILVAHN 66
Query: 93 SDPSKRITDLLVNITK 108
DP+ ++ TK
Sbjct: 67 DDPADQMFVFFPEDTK 82
>gi|17507947|ref|NP_491961.1| Protein RPB-5 [Caenorhabditis elegans]
gi|54036433|sp|Q9N5K2.1|RPAB1_CAEEL RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=RPB5 homolog
gi|351064177|emb|CCD72467.1| Protein RPB-5 [Caenorhabditis elegans]
Length = 211
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 55/77 (71%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+L+VNIT+H L P+H V+T +EK +LL +Y +++ QLPR+ + D +A+Y+GL RGQVVK
Sbjct: 134 AELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRGQVVK 193
Query: 160 VTYSGEITESHVTYRCV 176
+ E ++TYR V
Sbjct: 194 IIRPSETAGRYITYRLV 210
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ R + R+TVL+M+ DRGY VA E++ ++ F+ YG P + L I ++H
Sbjct: 7 ETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLTILVAHN 66
Query: 93 SDPSKRI 99
DP+ ++
Sbjct: 67 DDPADQM 73
>gi|345562747|gb|EGX45783.1| hypothetical protein AOL_s00140g99 [Arthrobotrys oligospora ATCC
24927]
Length = 225
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 56/77 (72%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNIT+H L P+H +++ ++K KLL++Y ++E QLPR+ + D +A+Y+GL+RG VVK+
Sbjct: 149 DLLVNITRHELVPQHVLMSREDKRKLLERYRLKETQLPRIQQADPVAKYFGLKRGMVVKI 208
Query: 161 TYSGEITESHVTYRCVW 177
E + +YR V+
Sbjct: 209 IRKSETAGRYASYRWVY 225
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQ 92
D +R+ R Y + RT EM+ DRGY + E+N+S+ DF+ Y D D R ++
Sbjct: 3 DADAREVSRLYRAWRTAHEMIADRGYDLTEEELNISLDDFKVKYC-DSDGRPQRKKMTFS 61
Query: 93 SDPSKRITD 101
+ PS+ + D
Sbjct: 62 AKPSQSMID 70
>gi|300120101|emb|CBK19655.2| DNA-directed RNA polymerase II [Blastocystis hominis]
Length = 215
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 55/76 (72%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+L+V+IT+H L P+HQ+L QEK LLK+Y +EE+QLPR+ K D +A+Y+G ++G+V ++
Sbjct: 138 ELVVDITEHELVPEHQLLKPQEKADLLKQYGLEERQLPRIQKLDPVARYFGAQKGEVFRI 197
Query: 161 TYSGEITESHVTYRCV 176
E +VTYR V
Sbjct: 198 VRKSETAGKYVTYRIV 213
>gi|294950415|ref|XP_002786618.1| DNA-directed RNA polymerases II 24 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239900910|gb|EER18414.1| DNA-directed RNA polymerases II 24 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 213
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 87/157 (55%), Gaps = 14/157 (8%)
Query: 22 EPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDR-GYAVALSEINLSVQDFRAIYGQDP 80
+P++ + F D R ++ R L+M + R A+ + + L+ AI P
Sbjct: 69 DPSDQLIVFFPDENKRVGVKPI--RTLALKMEEQRLSRAILVVQQPLTAFAKTAIQEASP 126
Query: 81 DVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRM 140
++ I + ++S+ L+VNIT H L P+H+ LT +EK LL++Y ++E QLPR+
Sbjct: 127 QME---IEVFNESE-------LVVNITHHELVPEHKPLTPEEKRLLLERYKVKENQLPRI 176
Query: 141 LKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR-CV 176
D +A+YYGL++GQV+K+ E +VTYR CV
Sbjct: 177 QSSDPVARYYGLKKGQVMKIIRPSETAGRYVTYRLCV 213
Score = 39.7 bits (91), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 8/103 (7%)
Query: 29 SGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG--QDPDVDR-- 84
SG +D+ + +R + R+T+ E+L+DRGY VA +N + + F + Q+ R
Sbjct: 3 SGPIDDTT---IRLWRVRKTIFELLQDRGYVVAQKYLNETKESFAQQWNEIQERKGGRHD 59
Query: 85 LRISISHQSDPSKRITDLLVNITKHV-LKPKHQVLTDQEKEKL 126
L I +S Q DPS ++ + K V +KP + E+++L
Sbjct: 60 LIILVSKQDDPSDQLIVFFPDENKRVGVKPIRTLALKMEEQRL 102
>gi|156101473|ref|XP_001616430.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Plasmodium vivax
Sal-1]
gi|148805304|gb|EDL46703.1| DNA-directed RNA polymerase II 23 kDa polypeptide, putative
[Plasmodium vivax]
Length = 205
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 52/77 (67%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
T+LLVNITKH L P+H LT EK LL++Y I+E +LPR+ D + +Y+GL +GQVVK
Sbjct: 128 TELLVNITKHELVPRHIPLTSDEKRNLLQRYKIKENKLPRIQDVDPVCRYFGLAKGQVVK 187
Query: 160 VTYSGEITESHVTYRCV 176
+ E +VTYR V
Sbjct: 188 IIRPSETAGRYVTYRLV 204
>gi|145230680|ref|XP_001389604.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Aspergillus niger CBS 513.88]
gi|134055723|emb|CAK44096.1| unnamed protein product [Aspergillus niger]
gi|350638607|gb|EHA26963.1| hypothetical protein ASPNIDRAFT_205564 [Aspergillus niger ATCC
1015]
gi|358370671|dbj|GAA87281.1| RNA polymerase subunit [Aspergillus kawachii IFO 4308]
Length = 235
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 52/76 (68%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNIT+H L PKH +L+ EK +LL++Y ++E QLPR+ D +A+Y GL RGQVVK+
Sbjct: 159 DLLVNITRHELVPKHVLLSPDEKARLLERYRLKESQLPRIQVSDPVARYLGLRRGQVVKI 218
Query: 161 TYSGEITESHVTYRCV 176
E + +YR V
Sbjct: 219 IRRSETAGRYASYRWV 234
Score = 42.0 bits (97), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 29 SGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRL 85
+G VD R+ R + + RTV EML DRGY V E+ + + +F+ Y PD +++
Sbjct: 7 AGSVD-ADREMTRLWRTWRTVFEMLLDRGYEVTEDEVQMPLHEFKQKYSDPLGYPDRNKM 65
Query: 86 RIS 88
+IS
Sbjct: 66 KIS 68
>gi|221057466|ref|XP_002261241.1| DNA-directed RNA polymerase 2 [Plasmodium knowlesi strain H]
gi|194247246|emb|CAQ40646.1| DNA-directed RNA polymerase 2, putative [Plasmodium knowlesi strain
H]
Length = 205
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 52/77 (67%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
T+LLVNITKH L P+H LT EK LL++Y I+E +LPR+ D + +Y+GL +GQVVK
Sbjct: 128 TELLVNITKHELVPRHIPLTSDEKRNLLQRYKIKENKLPRIQDVDPVCRYFGLAKGQVVK 187
Query: 160 VTYSGEITESHVTYRCV 176
+ E +VTYR V
Sbjct: 188 IIRPSETAGRYVTYRLV 204
>gi|296232401|ref|XP_002761575.1| PREDICTED: uncharacterized protein LOC100393628 [Callithrix
jacchus]
Length = 323
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQVVK+
Sbjct: 247 ELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKI 306
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 307 IRPSETAGRYITYRLV 322
>gi|124514006|ref|XP_001350359.1| DNA-directed RNA polymerase 2, putative [Plasmodium falciparum 3D7]
gi|23615776|emb|CAD52768.1| DNA-directed RNA polymerase 2, putative [Plasmodium falciparum 3D7]
Length = 205
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 52/77 (67%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
T+LLVNITKH L P+H LT EK+ LL++Y I E +LPR+ D + +Y+GL +GQVVK
Sbjct: 128 TELLVNITKHELVPRHIPLTSDEKKNLLQRYKIMENKLPRIQDVDPVCRYFGLSKGQVVK 187
Query: 160 VTYSGEITESHVTYRCV 176
+ E +VTYR V
Sbjct: 188 IIRPSETAGRYVTYRLV 204
>gi|302503318|ref|XP_003013619.1| hypothetical protein ARB_00066 [Arthroderma benhamiae CBS 112371]
gi|302665750|ref|XP_003024482.1| hypothetical protein TRV_01312 [Trichophyton verrucosum HKI 0517]
gi|327294261|ref|XP_003231826.1| DNA-directed RNA polymerase II [Trichophyton rubrum CBS 118892]
gi|291177184|gb|EFE32979.1| hypothetical protein ARB_00066 [Arthroderma benhamiae CBS 112371]
gi|291188539|gb|EFE43871.1| hypothetical protein TRV_01312 [Trichophyton verrucosum HKI 0517]
gi|326465771|gb|EGD91224.1| DNA-directed RNA polymerase II [Trichophyton rubrum CBS 118892]
Length = 236
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNIT H L PKH +L+ +EK+KLL++Y ++E QLPR+ D +A+Y GL RGQVVK+
Sbjct: 160 ELLVNITHHELVPKHILLSAEEKKKLLQRYRLKESQLPRIQSGDPVAKYLGLRRGQVVKI 219
Query: 161 TYSGEITESHVTYRCV 176
E + +YR V
Sbjct: 220 IRKSETAGRYASYRWV 235
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRISI 89
D R+ R + + RTV E+L DRGY V E+ +S+ DF+ Y PD +++RIS
Sbjct: 11 DEADREMTRLWRTWRTVFELLLDRGYEVTEEEVKISLSDFKQRYSDALGFPDRNKMRISA 70
Query: 90 SHQSDPSKRITDL 102
+R T L
Sbjct: 71 RPSQAMMERYTPL 83
>gi|296822412|ref|XP_002850281.1| DNA-directed RNA polymerase II polypeptide [Arthroderma otae CBS
113480]
gi|238837835|gb|EEQ27497.1| DNA-directed RNA polymerase II polypeptide [Arthroderma otae CBS
113480]
Length = 236
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNIT H L PKH +L+ +EK+KLL++Y ++E QLPR+ D +A+Y GL RGQVVK+
Sbjct: 160 ELLVNITHHELVPKHILLSAEEKKKLLQRYRLKESQLPRIQSGDPVAKYLGLRRGQVVKI 219
Query: 161 TYSGEITESHVTYRCV 176
E + +YR V
Sbjct: 220 IRKSETAGRYASYRWV 235
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRIS 88
R+ R + + RTV E+L DRGY V E+ +S+ +FR Y PD +++RIS
Sbjct: 13 ADREMARLWRTWRTVFELLLDRGYEVTEEEVKISLGEFRRRYSDALGFPDRNKMRIS 69
>gi|315056263|ref|XP_003177506.1| DNA-directed RNA polymerase I [Arthroderma gypseum CBS 118893]
gi|311339352|gb|EFQ98554.1| DNA-directed RNA polymerase I [Arthroderma gypseum CBS 118893]
Length = 236
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNIT H L PKH +L+ +EK+KLL++Y ++E QLPR+ D +A+Y GL RGQVVK+
Sbjct: 160 ELLVNITHHELVPKHILLSAEEKKKLLQRYRLKESQLPRIQSGDPVAKYLGLRRGQVVKI 219
Query: 161 TYSGEITESHVTYRCV 176
E + +YR V
Sbjct: 220 IRKSETAGRYASYRWV 235
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRISI 89
D R+ R + + RTV E+L DRGY V E+ +S+ DF+ Y PD +++RIS
Sbjct: 11 DEADREMTRLWRTWRTVFELLLDRGYEVTEEEVKISLGDFKQRYSDALGFPDRNKMRISA 70
Query: 90 SHQSDPSKRITDL 102
+R T L
Sbjct: 71 RPSQAMMERYTPL 83
>gi|294944697|ref|XP_002784385.1| DNA-directed RNA polymerases II 24 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239897419|gb|EER16181.1| DNA-directed RNA polymerases II 24 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 213
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 87/157 (55%), Gaps = 14/157 (8%)
Query: 22 EPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDR-GYAVALSEINLSVQDFRAIYGQDP 80
+P++ + F D R ++ R L+M + R A+ + + L+ AI P
Sbjct: 69 DPSDQLIVFFPDENKRVGVKPI--RTLALKMEEQRLSRAILVVQQPLTAFAKTAIQEASP 126
Query: 81 DVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRM 140
++ I + ++S+ L+VNIT H L P+H+ LT +EK LL++Y ++E QLPR+
Sbjct: 127 QME---IEVFNESE-------LVVNITHHELVPEHKPLTAEEKRLLLERYKVKENQLPRI 176
Query: 141 LKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR-CV 176
D +A+YYGL++GQV+K+ E +VTYR CV
Sbjct: 177 QSSDPVARYYGLKKGQVMKIIRPSETAGRYVTYRLCV 213
>gi|401626842|gb|EJS44762.1| rpb5p [Saccharomyces arboricola H-6]
Length = 215
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 78/157 (49%), Gaps = 3/157 (1%)
Query: 18 GYNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG 77
+ PTE ++ F + GS L + + + + + + E N F
Sbjct: 59 SFQANPTEESITKFPEMGS---LWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNN 115
Query: 78 QDPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL 137
P +L SI S + L+VNIT H L PKH L+ EK++LLK+Y ++E QL
Sbjct: 116 ITPSAMKLVPSIPPASIETFNEAALVVNITHHELVPKHIRLSTDEKKELLKRYRLKESQL 175
Query: 138 PRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
PR+ + D +A Y GL+RG+VVK+ E + + +YR
Sbjct: 176 PRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYR 212
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPS 96
R+ R + + +TV EM+KDRGY + E+ L ++DF+A Y D R +S Q++P+
Sbjct: 7 RNISRLWRAFKTVKEMVKDRGYFITQEEVELPLEDFKAKYC-DSMGRPQRKMMSFQANPT 65
Query: 97 K 97
+
Sbjct: 66 E 66
>gi|291240531|ref|XP_002740164.1| PREDICTED: DNA directed RNA polymerase II polypeptide E-like
[Saccoglossus kowalevskii]
Length = 210
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 56/77 (72%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+LL+N+T+H L P+H V+T +EK +LL +Y ++E QLPR+ + D +A+Y+GL+RGQVVK
Sbjct: 133 AELLINLTEHELVPEHVVMTPEEKAELLARYRLKEHQLPRIQQGDPVARYFGLKRGQVVK 192
Query: 160 VTYSGEITESHVTYRCV 176
+ E +++YR V
Sbjct: 193 IIRPSETAGKYISYRLV 209
>gi|212533615|ref|XP_002146964.1| RNA polymerase subunit [Talaromyces marneffei ATCC 18224]
gi|210072328|gb|EEA26417.1| RNA polymerase subunit [Talaromyces marneffei ATCC 18224]
Length = 172
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 53/77 (68%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+DLLVNIT H L PKH +L+ +EK +LL++Y ++E QLPR+ D +A+Y GL RGQVVK
Sbjct: 95 SDLLVNITHHELVPKHVLLSAEEKARLLERYRLKESQLPRIQVSDPVARYLGLRRGQVVK 154
Query: 160 VTYSGEITESHVTYRCV 176
+ E + +YR V
Sbjct: 155 IIRKSETAGRYASYRWV 171
>gi|260788314|ref|XP_002589195.1| hypothetical protein BRAFLDRAFT_278645 [Branchiostoma floridae]
gi|229274370|gb|EEN45206.1| hypothetical protein BRAFLDRAFT_278645 [Branchiostoma floridae]
Length = 210
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 83/158 (52%), Gaps = 14/158 (8%)
Query: 18 GYNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG 77
+N +PT+ F D + +T+ + Y + E N+S G
Sbjct: 63 AHNDDPTDQMFVFFADEPK-------IGIKTI------KMYCQRMQEENISRAIIVVQMG 109
Query: 78 QDPDVDRLRISISHQSDPSKRI-TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 136
P + + ++ + + + ++LL+NIT+H L P+H V+T +EK +LL +Y ++E Q
Sbjct: 110 MTPSAKQALVDMAPKYILEQFLESELLINITEHQLVPEHVVMTPEEKAELLARYRLKEHQ 169
Query: 137 LPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
LPR+ D +A+Y+GL+RGQVVK+ E +++YR
Sbjct: 170 LPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYISYR 207
>gi|50311991|ref|XP_456027.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|54036341|sp|Q6CJ62.1|RPAB1_KLULA RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1
gi|49645163|emb|CAG98735.1| KLLA0F21098p [Kluyveromyces lactis]
Length = 215
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 80/157 (50%), Gaps = 3/157 (1%)
Query: 18 GYNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG 77
+ PTE + F + GS L + + + + V ++E N F G
Sbjct: 59 SFQSNPTEESIEKFPEMGS---LWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSG 115
Query: 78 QDPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL 137
P +++ + + + L+VNIT H L PKH L++ EK++LLK+Y ++E QL
Sbjct: 116 ITPSANKILPTAAPAVIETFPEASLVVNITHHELVPKHIRLSEAEKKELLKRYRLKESQL 175
Query: 138 PRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
PR+ + D +A Y GL+RG+V+K+ E + + +YR
Sbjct: 176 PRIQRMDPVALYLGLKRGEVIKIIRKSETSGRYASYR 212
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPS 96
R+ R + + +TV EM++DRGY + EI+LS++DF+A Y D R +S QS+P+
Sbjct: 7 RNISRLWRAFKTVKEMVRDRGYFITQEEIDLSLEDFKAKYC-DSMGKPQRKMMSFQSNPT 65
Query: 97 K 97
+
Sbjct: 66 E 66
>gi|169600143|ref|XP_001793494.1| hypothetical protein SNOG_02900 [Phaeosphaeria nodorum SN15]
gi|160705387|gb|EAT89631.2| hypothetical protein SNOG_02900 [Phaeosphaeria nodorum SN15]
Length = 277
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNITKH L PKH +L+ +EK +LL +Y ++E QLPR+ D +A++ GL RG VVK+
Sbjct: 201 DLLVNITKHELVPKHVLLSAEEKAQLLTRYRLKETQLPRIQSTDPVAKFLGLRRGSVVKI 260
Query: 161 TYSGEITESHVTYRCV 176
E + +YR V
Sbjct: 261 IRKSETAGRYASYRWV 276
>gi|332022832|gb|EGI63105.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Acromyrmex echinatior]
Length = 210
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 56/77 (72%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++LL+NIT+H L P+H VLT EKE+LL +Y ++E QL R+ D +A+Y+GL+RGQVVK
Sbjct: 133 SELLINITEHELVPEHIVLTPDEKEELLTRYKLKENQLMRIQAGDPVARYFGLKRGQVVK 192
Query: 160 VTYSGEITESHVTYRCV 176
+ S E +++YR V
Sbjct: 193 IIRSSETAGRYISYRLV 209
Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ + + R+TV+++ DRGY V E++ +++ F+ +G P R L + ++H
Sbjct: 6 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLELFKEQFGDKPSEKRPARSDLIVLVAHN 65
Query: 93 SDPSKRI 99
DP+ ++
Sbjct: 66 DDPTDQL 72
>gi|340386554|ref|XP_003391773.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like, partial [Amphimedon queenslandica]
Length = 124
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 54/75 (72%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+L++NIT+H L P+H V+T +EK +LL +Y ++E QLP++ D +A+YYGL+RGQVVK
Sbjct: 49 AELMINITEHELVPEHIVMTTEEKRELLARYKLKEHQLPKIQSGDPVARYYGLKRGQVVK 108
Query: 160 VTYSGEITESHVTYR 174
+ E +VTYR
Sbjct: 109 IIRPSETAGRYVTYR 123
>gi|322797006|gb|EFZ19320.1| hypothetical protein SINV_02648 [Solenopsis invicta]
Length = 211
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 56/77 (72%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++LL+NIT+H L P+H VLT EKE+LL +Y ++E QL R+ D +A+Y+GL+RGQVVK
Sbjct: 134 SELLINITEHELVPEHIVLTPDEKEELLTRYKLKENQLMRIQAGDPVARYFGLKRGQVVK 193
Query: 160 VTYSGEITESHVTYRCV 176
+ S E +++YR V
Sbjct: 194 IIRSSETAGRYISYRLV 210
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ + + R+TV+++ DRGY V E++ ++ F+ +G P + L + ++H
Sbjct: 7 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQDLEQFKEQFGDKPSEKKPARSDLIVLVAHN 66
Query: 93 SDPSKRI 99
DP+ ++
Sbjct: 67 DDPTDQL 73
>gi|302423138|ref|XP_003009399.1| DNA-directed RNA polymerases I [Verticillium albo-atrum VaMs.102]
gi|261352545|gb|EEY14973.1| DNA-directed RNA polymerases I [Verticillium albo-atrum VaMs.102]
gi|346970556|gb|EGY14008.1| DNA-directed RNA polymerases I [Verticillium dahliae VdLs.17]
Length = 231
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 52/74 (70%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNIT H L PKH +L+ EK LLK+Y ++E QLPR+ ++D +A+Y GL+RG VVK+
Sbjct: 155 DLLVNITHHELVPKHILLSTDEKAALLKRYRLKETQLPRIKREDPVARYLGLKRGNVVKI 214
Query: 161 TYSGEITESHVTYR 174
+ E + +YR
Sbjct: 215 IRNSETAGRYASYR 228
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 9/82 (10%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY-GQDPDVDRLRISISH 91
D S++ +R + + RTV EM DRGY +A SEI +S+ FR Y D V+R +++ S
Sbjct: 5 DGQSKEVVRAWRAWRTVHEMCADRGYELAESEIQISLDRFRHEYLAADGSVNRSKLTFS- 63
Query: 92 QSDPSKRITDLLVNITKHVLKP 113
+ PS +D+L ++H P
Sbjct: 64 -ARPS---SDML---SRHTPAP 78
>gi|330803783|ref|XP_003289882.1| RNA polymerase II core subunit [Dictyostelium purpureum]
gi|325080041|gb|EGC33614.1| RNA polymerase II core subunit [Dictyostelium purpureum]
Length = 196
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNIT H L PKH +LT +EK +LL +Y ++E QLPR+ D IA+Y+GL RG VVK+
Sbjct: 120 ELLVNITHHQLVPKHILLTKEEKLELLTRYKMKESQLPRIQLNDPIARYFGLARGNVVKI 179
Query: 161 TYSGEITESHVTYR-CV 176
E ++TYR CV
Sbjct: 180 VRPSETAGRYITYRLCV 196
>gi|340377817|ref|XP_003387425.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Amphimedon queenslandica]
Length = 143
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 54/77 (70%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+L++NIT+H L P+H V+T +EK +LL +Y ++E QLP++ D +A+YYGL+RGQVVK
Sbjct: 66 AELMINITEHELVPEHIVMTTEEKRELLARYKLKEHQLPKIQSGDPVARYYGLKRGQVVK 125
Query: 160 VTYSGEITESHVTYRCV 176
+ E + TYR V
Sbjct: 126 IIRPSETAGRYATYRLV 142
>gi|307108804|gb|EFN57043.1| hypothetical protein CHLNCDRAFT_48698 [Chlorella variabilis]
Length = 203
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+L VNIT+H + P+HQVL+ +K LL++Y +++ QLPR+ +D +A+Y GLERGQVV++
Sbjct: 127 ELRVNITRHSMVPQHQVLSRLDKAALLERYKVKDTQLPRIQHQDPVARYLGLERGQVVRI 186
Query: 161 TYSGEITESHVTYR-CV 176
E +VTYR CV
Sbjct: 187 VRGSETAGRYVTYRLCV 203
>gi|397485347|ref|XP_003813812.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Pan paniscus]
Length = 256
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQVVK+
Sbjct: 180 ELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKI 239
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 240 IRPSETAGRYITYRLV 255
>gi|346325153|gb|EGX94750.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Cordyceps
militaris CM01]
Length = 334
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 48/60 (80%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNIT H L P+H +L+ +EK LLK+Y ++E QLPR+L KD +A+Y GL+RGQVVK+
Sbjct: 200 DLLVNITHHELVPRHVLLSREEKIALLKRYRLKETQLPRILAKDPVARYLGLKRGQVVKI 259
>gi|154276568|ref|XP_001539129.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Ajellomyces
capsulatus NAm1]
gi|150414202|gb|EDN09567.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Ajellomyces
capsulatus NAm1]
Length = 236
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNIT H L PKH +L+ +EK++LL++Y ++E QLPR+ D +A+Y GL RGQVVK+
Sbjct: 160 ELLVNITHHELVPKHVLLSAEEKKRLLQRYRLKESQLPRIQSGDPVAKYLGLRRGQVVKI 219
Query: 161 TYSGEITESHVTYRCV 176
E + +YR V
Sbjct: 220 IRRSETAGRYASYRWV 235
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRISIS 90
+ R+ R + + RTV EML DRGY V EI +S+ +FR Y PD ++++IS
Sbjct: 12 DADREMTRLWRTWRTVFEMLADRGYEVTEEEIKISLDEFRTRYSDALGFPDRNKMKIS-- 69
Query: 91 HQSDPSKRITD 101
+ PS+ + D
Sbjct: 70 --ARPSQTMMD 78
>gi|308505230|ref|XP_003114798.1| CRE-RPB-5 protein [Caenorhabditis remanei]
gi|308258980|gb|EFP02933.1| CRE-RPB-5 protein [Caenorhabditis remanei]
Length = 211
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 54/77 (70%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+L+VNIT+H L P+H V+T EK +LL +Y +++ QLPR+ + D +A+Y+GL RGQVVK
Sbjct: 134 AELMVNITEHELVPEHVVMTADEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRGQVVK 193
Query: 160 VTYSGEITESHVTYRCV 176
+ E ++TYR V
Sbjct: 194 IIRPSETAGRYITYRLV 210
>gi|225560287|gb|EEH08569.1| RNA polymerase subunit [Ajellomyces capsulatus G186AR]
gi|240279038|gb|EER42544.1| RNA polymerase subunit [Ajellomyces capsulatus H143]
gi|325090297|gb|EGC43607.1| RNA polymerase subunit [Ajellomyces capsulatus H88]
Length = 236
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNIT H L PKH +L+ +EK++LL++Y ++E QLPR+ D +A+Y GL RGQVVK+
Sbjct: 160 ELLVNITHHELVPKHVLLSAEEKKRLLQRYRLKESQLPRIQSGDPVAKYLGLRRGQVVKI 219
Query: 161 TYSGEITESHVTYRCV 176
E + +YR V
Sbjct: 220 IRRSETAGRYASYRWV 235
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRISIS 90
+ R+ R + + RTV EML DRGY V EI + + +FR Y PD ++++IS
Sbjct: 12 DADREMTRLWRTWRTVFEMLADRGYEVTEEEIKIPLDEFRTRYSDALGFPDRNKMKIS-- 69
Query: 91 HQSDPSKRITD 101
+ PS+ + D
Sbjct: 70 --ARPSQTMMD 78
>gi|196010385|ref|XP_002115057.1| expressed hypothetical protein [Trichoplax adhaerens]
gi|190582440|gb|EDV22513.1| expressed hypothetical protein [Trichoplax adhaerens]
Length = 210
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 55/77 (71%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++L++NIT+H L PKH V++ +EK +LL +Y ++E QLPR+ D +A+YYGL+RGQ V+
Sbjct: 133 SELMINITEHHLVPKHIVMSPEEKAELLARYKLKEHQLPRIQVGDPVARYYGLKRGQFVR 192
Query: 160 VTYSGEITESHVTYRCV 176
+ E ++TYR V
Sbjct: 193 IIRPSETAGRYITYRLV 209
>gi|440634485|gb|ELR04404.1| hypothetical protein GMDG_01480 [Geomyces destructans 20631-21]
Length = 236
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 54/77 (70%), Gaps = 1/77 (1%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNIT H L PKH +L+ +E+ KLL++Y +++ QLPR+ D +A+Y GL RGQVVK+
Sbjct: 160 DLLVNITHHELVPKHVLLSKEERSKLLQRYRLKDTQLPRIQVGDPVARYLGLRRGQVVKI 219
Query: 161 TYSGEITESHVTYR-CV 176
+ E + +YR CV
Sbjct: 220 IRTSETAGRYASYRLCV 236
>gi|156061727|ref|XP_001596786.1| hypothetical protein SS1G_03009 [Sclerotinia sclerotiorum 1980]
gi|154700410|gb|EDO00149.1| hypothetical protein SS1G_03009 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 242
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 51/77 (66%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNIT H L PKH +L+ +E+ KLL +Y +++ QLPR+ D +A+Y GL RGQVVK+
Sbjct: 165 DLLVNITHHELVPKHVLLSKEERAKLLSRYRLKDTQLPRIQAADPVAKYLGLRRGQVVKI 224
Query: 161 TYSGEITESHVTYRCVW 177
E + +YR +
Sbjct: 225 IRKSETAGRYASYRLAF 241
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY-GQDPDVDRLRISIS 90
D R++ + + RTV EM++DRGY +A E+N+S F+A + D VDR +++ S
Sbjct: 13 DGIDREAAKLWRCYRTVHEMVQDRGYLLAEEEVNMSFDTFKAKFTSNDGSVDRRQMNFS 71
>gi|298712690|emb|CBJ48715.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 212
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 58/78 (74%), Gaps = 1/78 (1%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+L+++IT+H L P+HQVL+ ++K +LLK+Y +++ QLPR+ D +A+++G+++GQV K
Sbjct: 135 AELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQKGQVCK 194
Query: 160 VTYSGEITESHVTYR-CV 176
+T E +VTYR C+
Sbjct: 195 ITRPSETAGRYVTYRLCI 212
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIT 100
+ Y R+T ++ML+ RGY V ++++ + F YG +P+ L + + DP +I
Sbjct: 14 KIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIF 73
Query: 101 DLLVNITKHVLKP 113
+ K +KP
Sbjct: 74 VFFPDDEKVGVKP 86
>gi|261200923|ref|XP_002626862.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239593934|gb|EEQ76515.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239607191|gb|EEQ84178.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis ER-3]
gi|327351148|gb|EGE80005.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis ATCC 18188]
Length = 236
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNIT H L PKH +L+ +EK++LL++Y ++E QLPR+ D +A+Y GL RGQVVK+
Sbjct: 160 ELLVNITHHELVPKHVLLSAEEKKRLLQRYRLKESQLPRIQSGDPVAKYLGLRRGQVVKI 219
Query: 161 TYSGEITESHVTYRCV 176
E + +YR V
Sbjct: 220 IRKSETAGRYASYRWV 235
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRISIS 90
+ R+ R + + RTV EML DRGY V EI + + +FR Y PD ++++IS
Sbjct: 12 DADREMTRLWRTWRTVFEMLADRGYEVTEEEIKIPLDEFRTRYSDALGFPDRNKMKIS-- 69
Query: 91 HQSDPSKRITDLLVNITKHVLKP 113
+ PS+ + D + LKP
Sbjct: 70 --ARPSQAMMDRYTPLPT-TLKP 89
>gi|365761982|gb|EHN03600.1| Rpb5p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401841351|gb|EJT43753.1| RPB5-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 215
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 77/157 (49%), Gaps = 3/157 (1%)
Query: 18 GYNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG 77
+ PTE +S F + GS L + + + + + + E N F
Sbjct: 59 SFQANPTEESVSKFPEMGS---LWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNN 115
Query: 78 QDPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL 137
P +L SI + + L+VNIT H L PKH L+ EK +LLK+Y ++E QL
Sbjct: 116 ITPSAMKLVPSIPPATIETFNEAALVVNITHHELVPKHIRLSTDEKRELLKRYRLKESQL 175
Query: 138 PRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
PR+ + D +A Y GL+RG+VVK+ E + + +YR
Sbjct: 176 PRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYR 212
Score = 40.0 bits (92), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPS 96
R+ R + + +TV EM+KDRGY + E+ L ++DF+A Y D R +S Q++P+
Sbjct: 7 RNISRLWRAFKTVKEMVKDRGYFITQEEVELPLEDFKAKYC-DSMGRPQRKMMSFQANPT 65
Query: 97 K 97
+
Sbjct: 66 E 66
>gi|344307865|ref|XP_003422599.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Loxodonta africana]
Length = 224
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQVVK+
Sbjct: 148 ELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKI 207
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 208 IRPSETAGRYITYRLV 223
>gi|84000159|ref|NP_001033182.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Bos
taurus]
gi|109893821|sp|Q2T9T3.1|RPAB1_BOVIN RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=DNA-directed RNA polymerase II
subunit E; AltName: Full=RPB5 homolog
gi|83405854|gb|AAI11281.1| Polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Bos
taurus]
Length = 210
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 90/179 (50%), Gaps = 7/179 (3%)
Query: 5 NGYDSSME----MEGGNGYNGEPTESCLSGFV--DNGSRDSLRYYLSRRTVLEMLKDRGY 58
+G D ++E GG G P + L+ V ++ D + + + + + Y
Sbjct: 31 DGLDQTLEEFKAQFGGKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVY 90
Query: 59 AVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIT-DLLVNITKHVLKPKHQV 117
+ E N++ G P + + ++ + + + +LL+NIT+H L P+H V
Sbjct: 91 CQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVV 150
Query: 118 LTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 176
+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQVVK+ E ++TYR V
Sbjct: 151 MTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 209
>gi|156848515|ref|XP_001647139.1| hypothetical protein Kpol_1036p23 [Vanderwaltozyma polyspora DSM
70294]
gi|156117823|gb|EDO19281.1| hypothetical protein Kpol_1036p23 [Vanderwaltozyma polyspora DSM
70294]
Length = 215
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 77/157 (49%), Gaps = 3/157 (1%)
Query: 18 GYNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG 77
+ PTE + F + SL + + + + + + E N F
Sbjct: 59 SFQANPTEETMEKF---PTMSSLWVEFCDEPSVGVKTMKNFVIHIQEKNYQTGIFVYQTN 115
Query: 78 QDPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL 137
P +L SI + + L+VNIT H L PKH L++ EK++LLKKY ++E QL
Sbjct: 116 VTPSAMKLVPSIPPATIETFHEASLIVNITHHELVPKHIRLSENEKKELLKKYRLKESQL 175
Query: 138 PRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
PR+ + D +A Y GL+RG+VVK+ E + + +YR
Sbjct: 176 PRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYR 212
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Query: 32 VDNGSRDSL-RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISIS 90
+D S S+ R + + RTV EM++DRGY +A EI+LS++DF+A Y D R +S
Sbjct: 1 MDQDSERSISRLWRTFRTVKEMVRDRGYFIAQEEIDLSLEDFKAKYC-DSMGRPQRKMMS 59
Query: 91 HQSDPSK 97
Q++P++
Sbjct: 60 FQANPTE 66
>gi|226289047|gb|EEH44559.1| DNA-directed RNA polymerases I [Paracoccidioides brasiliensis Pb18]
Length = 236
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNIT H L PKH +L+ +EK++LL++Y ++E QLPR+ D +A+Y GL RGQVVK+
Sbjct: 160 ELLVNITHHELVPKHILLSAEEKKRLLQRYRLKESQLPRIQSGDPVAKYLGLRRGQVVKI 219
Query: 161 TYSGEITESHVTYRCV 176
E + +YR V
Sbjct: 220 IRKSETAGRYASYRWV 235
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRIS 88
R+ + + + RTV EML DRGY V EI + +++FR Y PD ++++IS
Sbjct: 13 ADREMTKLWRTWRTVFEMLADRGYEVTEEEIKIPLEEFRTRYSDALGFPDRNKMKIS 69
>gi|154292350|ref|XP_001546750.1| hypothetical protein BC1G_14664 [Botryotinia fuckeliana B05.10]
Length = 242
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 51/77 (66%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNIT H L PKH +L+ +E+ KLL +Y +++ QLPR+ D +A+Y GL RGQVVK+
Sbjct: 165 DLLVNITHHELVPKHVLLSREERAKLLSRYRLKDTQLPRIQAADPVAKYLGLRRGQVVKI 224
Query: 161 TYSGEITESHVTYRCVW 177
E + +YR +
Sbjct: 225 IRKSETAGRYASYRLAF 241
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY-GQDPDVDRLRISIS 90
D R++ + + RTV EM++DRGY +A E+N+S F++ + D VDR +++ S
Sbjct: 13 DGIDREAAKLWRCYRTVHEMVQDRGYLLAEEEVNMSFDTFKSKFTSNDGSVDRRQMNFS 71
>gi|57525846|ref|NP_001003564.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Danio
rerio]
gi|50417194|gb|AAH77151.1| Polymerase (RNA) II (DNA directed) polypeptide E [Danio rerio]
Length = 210
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 54/76 (71%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E +LL +Y ++E QLPR+ D +A+Y+GL+RGQVVK+
Sbjct: 134 ELLINITEHELVPEHIVMTKEEVTELLARYKLKESQLPRIQAGDPVARYFGLKRGQVVKI 193
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 194 IRPSETAGRYITYRLV 209
>gi|295671500|ref|XP_002796297.1| DNA-directed RNA polymerases I [Paracoccidioides sp. 'lutzii' Pb01]
gi|226284430|gb|EEH39996.1| DNA-directed RNA polymerases I [Paracoccidioides sp. 'lutzii' Pb01]
Length = 236
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNIT H L PKH +L+ +EK++LL++Y ++E QLPR+ D +A+Y GL RGQVVK+
Sbjct: 160 ELLVNITHHELVPKHILLSAEEKKRLLQRYRLKESQLPRIQSGDPVAKYLGLRRGQVVKI 219
Query: 161 TYSGEITESHVTYRCV 176
E + +YR V
Sbjct: 220 IRKSETAGRYASYRWV 235
Score = 42.0 bits (97), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRIS 88
R+ + + + RTV EML DRGY V EI + + +FR Y PD ++++IS
Sbjct: 13 ADREMTKLWRTWRTVFEMLADRGYEVTEEEIKIPLDEFRTRYSDALGFPDRNKMKIS 69
>gi|225706160|gb|ACO08926.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Osmerus mordax]
Length = 210
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 54/76 (71%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E +LL +Y ++E QLPR+ D +A+Y+GL+RGQVVK+
Sbjct: 134 ELLINITEHELVPEHIVMTKEELSELLTRYKLKESQLPRIQAGDPVARYFGLKRGQVVKI 193
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 194 IRPSETAGRYITYRLV 209
>gi|323449166|gb|EGB05056.1| hypothetical protein AURANDRAFT_31430 [Aureococcus anophagefferens]
Length = 204
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 56/80 (70%), Gaps = 1/80 (1%)
Query: 98 RITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQV 157
R +LLV+IT+H L P HQ L+ ++K LLK+Y ++E QLPR+ K D +A+YYGL+ G+V
Sbjct: 125 RDNELLVDITEHKLVPAHQPLSPEDKAALLKRYKLKESQLPRIQKNDPVARYYGLKVGEV 184
Query: 158 VKVTYSGEITESHVTYR-CV 176
+K+ E +VTYR C+
Sbjct: 185 IKIVRPSETAGRYVTYRVCI 204
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%)
Query: 36 SRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDP 95
S ++ + RRT+L+MLK R Y V ++++ +S + F+ +G+ P L I H++D
Sbjct: 3 SAEASHLFRIRRTLLKMLKKRNYVVDVAQLEMSSEAFQEQFGEQPKRTDLTILAEHETDA 62
Query: 96 SKRITDLL 103
++ L
Sbjct: 63 EDQVFIFL 70
>gi|281202322|gb|EFA76527.1| RNA polymerase II core subunit [Polysphondylium pallidum PN500]
Length = 288
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 51/74 (68%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNIT H L PKH +L+ +EK +LL KY ++E QLPR+ D +A+Y+GL RG VVK+
Sbjct: 151 ELLVNITHHQLVPKHILLSKEEKSELLAKYKMKETQLPRIQINDPVARYFGLRRGHVVKI 210
Query: 161 TYSGEITESHVTYR 174
E ++TYR
Sbjct: 211 IRPSETAGRYITYR 224
>gi|410921186|ref|XP_003974064.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Takifugu rubripes]
gi|47216655|emb|CAG04853.1| unnamed protein product [Tetraodon nigroviridis]
Length = 210
Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 54/76 (71%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E +LL +Y ++E QLPR+ D +A+Y+GL+RGQVVK+
Sbjct: 134 ELLINITEHELVPEHIVMTKEEVTELLARYKLKESQLPRIQAGDPVARYFGLKRGQVVKI 193
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 194 IRPSETAGRYITYRLV 209
>gi|348504738|ref|XP_003439918.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Oreochromis niloticus]
Length = 210
Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 54/76 (71%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E +LL +Y ++E QLPR+ D +A+Y+GL+RGQVVK+
Sbjct: 134 ELLINITEHELVPEHIVMTKEEVTELLARYKLKESQLPRIQAGDPVARYFGLKRGQVVKI 193
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 194 IRPSETAGRYITYRLV 209
>gi|308321620|gb|ADO27961.1| DNA-directed RNA polymerases I, II and III subunit rpabc1
[Ictalurus furcatus]
Length = 210
Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 54/76 (71%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E +LL +Y ++E QLPR+ D +A+Y+GL+RGQVVK+
Sbjct: 134 ELLINITEHELVPEHIVMTKEEVTELLARYKLKESQLPRIQAGDPVARYFGLKRGQVVKI 193
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 194 IRPSETAGRYITYRLV 209
>gi|156548548|ref|XP_001604962.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Nasonia vitripennis]
Length = 210
Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 55/77 (71%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++LL+NIT+H L P+H VLT EKE+LL +Y ++E QL R+ D +A+Y+GL+RGQVVK
Sbjct: 133 SELLINITEHELVPEHIVLTPDEKEELLTRYKLKENQLMRIQANDPVARYFGLKRGQVVK 192
Query: 160 VTYSGEITESHVTYRCV 176
+ E +++YR V
Sbjct: 193 IIRPSETAGRYISYRLV 209
Score = 38.9 bits (89), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ + + R+TV+++ DRGY V E++ +++ F+ +G P R L + ++H
Sbjct: 6 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHN 65
Query: 93 SDPSKRI 99
DP+ ++
Sbjct: 66 DDPTDQL 72
>gi|317574789|ref|NP_001187413.1| DNA-directed RNA polymerases i II and III subunit rpabc1 [Ictalurus
punctatus]
gi|308322947|gb|ADO28611.1| DNA-directed RNA polymerases i II and III subunit rpabc1 [Ictalurus
punctatus]
Length = 210
Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 54/76 (71%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E +LL +Y ++E QLPR+ D +A+Y+GL+RGQVVK+
Sbjct: 134 ELLINITEHELVPEHIVMTKEEVTELLARYKLKESQLPRIQAGDPVARYFGLKRGQVVKI 193
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 194 IRPSETAGRYITYRLV 209
>gi|432855568|ref|XP_004068251.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 1 [Oryzias latipes]
Length = 210
Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 54/76 (71%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E +LL +Y ++E QLPR+ D +A+Y+GL+RGQVVK+
Sbjct: 134 ELLINITEHELVPEHIVMTKEEVTELLARYKLKESQLPRIQAGDPVARYFGLKRGQVVKI 193
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 194 IRPSETAGRYITYRLV 209
>gi|254578454|ref|XP_002495213.1| ZYRO0B06006p [Zygosaccharomyces rouxii]
gi|238938103|emb|CAR26280.1| ZYRO0B06006p [Zygosaccharomyces rouxii]
Length = 215
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 76/157 (48%), Gaps = 3/157 (1%)
Query: 18 GYNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG 77
+ PTE ++ F GS L + + + + + + E N F
Sbjct: 59 SFQSNPTEESIAKFPSMGS---LWVEFCDEPTVGVKTMKTFVIHIQEKNFQTGIFVYQNN 115
Query: 78 QDPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL 137
P +L SI + + L+VNIT H L PKH ++ EK +LLK+Y ++E QL
Sbjct: 116 VTPSAMKLVPSIPPATIETFHEASLVVNITHHELVPKHIRFSEDEKRELLKRYRLKESQL 175
Query: 138 PRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
PR+ + D +A Y GL+RG+VVK+ E + + +YR
Sbjct: 176 PRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYR 212
Score = 43.5 bits (101), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPS 96
R+ R + + +TV EM+KDRGY +A EI L ++DF+A Y D R +S QS+P+
Sbjct: 7 RNISRLWRTFKTVKEMVKDRGYFIAQEEIELPLEDFKAKYC-DSMGRPQRKMMSFQSNPT 65
Query: 97 K 97
+
Sbjct: 66 E 66
>gi|209733016|gb|ACI67377.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Salmo
salar]
gi|225715082|gb|ACO13387.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Esox
lucius]
Length = 210
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 55/76 (72%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E +LL +Y ++E QLPR+ + D +A+Y+GL+RGQVVK+
Sbjct: 134 ELLINITEHELVPEHIVMTKEELSELLLRYKLKESQLPRIQQGDPVARYFGLKRGQVVKI 193
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 194 IRPSETAGRYITYRLV 209
>gi|410081459|ref|XP_003958309.1| hypothetical protein KAFR_0G01400 [Kazachstania africana CBS 2517]
gi|372464897|emb|CCF59174.1| hypothetical protein KAFR_0G01400 [Kazachstania africana CBS 2517]
Length = 215
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 79/157 (50%), Gaps = 3/157 (1%)
Query: 18 GYNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG 77
+ P + L+ F D GS L + + + + V + E N S F
Sbjct: 59 SFQANPNDEFLAKFPDLGS---LWVEFCDEPSVGVKTMKNFVVHIQEKNYSTGIFIYQNN 115
Query: 78 QDPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL 137
P +L SI + + + L+VNIT H L PKH L+ +EK++LLK+Y ++E QL
Sbjct: 116 VTPSAMKLVPSIPPATIETFQEASLVVNITHHELVPKHIRLSLEEKKELLKRYRLKESQL 175
Query: 138 PRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
PR+ + D +A Y GL+RG+VVK+ E + +YR
Sbjct: 176 PRIQRVDPVALYLGLKRGEVVKIIRKSETAGRYASYR 212
>gi|440470981|gb|ELQ40020.1| DNA-directed RNA polymerases I [Magnaporthe oryzae Y34]
gi|440484880|gb|ELQ64891.1| DNA-directed RNA polymerases I [Magnaporthe oryzae P131]
Length = 259
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 52/76 (68%)
Query: 99 ITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVV 158
+ DLLVNIT H L PKH +L+ EK+ LL++Y ++E QLPR+ KD +A+Y GL+RG VV
Sbjct: 152 LEDLLVNITHHELVPKHVMLSRVEKKALLERYRLKETQLPRIQTKDPVARYLGLQRGNVV 211
Query: 159 KVTYSGEITESHVTYR 174
K+ E + +YR
Sbjct: 212 KIIRHSETAGRYASYR 227
>gi|328865416|gb|EGG13802.1| RapGAP/RanGAP domain-containing protein [Dictyostelium
fasciculatum]
Length = 1144
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 52/76 (68%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNIT H L PKH +LT +EK++LL +Y ++E QLPR+ D +A+Y+GL RG VVK+
Sbjct: 130 ELLVNITHHQLVPKHILLTKEEKKELLTRYKMKETQLPRVQMNDPVARYFGLARGDVVKI 189
Query: 161 TYSGEITESHVTYRCV 176
E ++TY +
Sbjct: 190 IRPSETAGRYITYSNI 205
>gi|389628590|ref|XP_003711948.1| DNA-directed RNA polymerase I [Magnaporthe oryzae 70-15]
gi|351644280|gb|EHA52141.1| DNA-directed RNA polymerase I [Magnaporthe oryzae 70-15]
Length = 230
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 52/76 (68%)
Query: 99 ITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVV 158
+ DLLVNIT H L PKH +L+ EK+ LL++Y ++E QLPR+ KD +A+Y GL+RG VV
Sbjct: 152 LEDLLVNITHHELVPKHVMLSRVEKKALLERYRLKETQLPRIQTKDPVARYLGLQRGNVV 211
Query: 159 KVTYSGEITESHVTYR 174
K+ E + +YR
Sbjct: 212 KIIRHSETAGRYASYR 227
>gi|114674426|ref|XP_512960.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Pan troglodytes]
Length = 230
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQVVK+
Sbjct: 154 ELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKI 213
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 214 IRPSETAGRYITYRLV 229
>gi|378727418|gb|EHY53877.1| DNA-directed RNA polymerase II subunit E [Exophiala dermatitidis
NIH/UT8656]
Length = 238
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 54/78 (69%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+DLLVNIT+H L PKH +L+ +EK+ LL +Y ++E QLPR+ D +A+Y GL+RG VVK
Sbjct: 161 SDLLVNITRHELVPKHVLLSAEEKKVLLDRYRLKETQLPRIQFNDPVAKYLGLKRGNVVK 220
Query: 160 VTYSGEITESHVTYRCVW 177
+ E + +YR V+
Sbjct: 221 IIRKSETAGRYASYRWVF 238
Score = 43.5 bits (101), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDP 80
G ++ R + + RTVLEML DRGYA+A E+ ++ DF+ +G DP
Sbjct: 13 GEKELTRLWRTWRTVLEMLVDRGYAIAQDELAITRDDFQRKFG-DP 57
>gi|119186603|ref|XP_001243908.1| hypothetical protein CIMG_03349 [Coccidioides immitis RS]
gi|303317654|ref|XP_003068829.1| DNA-directed RNA polymerase subunit, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240108510|gb|EER26684.1| DNA-directed RNA polymerase subunit, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320038831|gb|EFW20766.1| DNA-directed RNA polymerase 1 [Coccidioides posadasii str.
Silveira]
gi|392870629|gb|EAS32444.2| DNA-directed RNA polymerase II polypeptide [Coccidioides immitis
RS]
Length = 236
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNIT H L PKH +L+ +EK++LL++Y ++E QLPR+ D +A+Y GL RGQVVK+
Sbjct: 160 ELLVNITHHELVPKHVLLSAEEKKRLLQRYRLKESQLPRIQIGDPVAKYLGLRRGQVVKI 219
Query: 161 TYSGEITESHVTYRCV 176
E + +YR V
Sbjct: 220 IRKSETAGRYASYRWV 235
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRIS 88
R+ R + + RTV EML DRGY V E+N+ + +FR Y PD +++RIS
Sbjct: 13 ADREMTRLWRTWRTVFEMLLDRGYEVTEEEVNVPLAEFRTKYSDALGFPDRNKMRIS 69
>gi|449273017|gb|EMC82646.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1, partial
[Columba livia]
Length = 168
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQVVK+
Sbjct: 92 ELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKI 151
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 152 IRPSETAGRYITYRLV 167
>gi|354480932|ref|XP_003502657.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cricetulus griseus]
Length = 235
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQVVK+
Sbjct: 159 ELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYFGIKRGQVVKI 218
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 219 IRPSETAGRYITYRLV 234
>gi|387915534|gb|AFK11376.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Callorhinchus milii]
Length = 210
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 54/76 (71%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E +LL +Y ++E QLPR+ D +A+Y+GL+RGQV+K+
Sbjct: 134 ELLINITEHELVPEHIVMTKEEVTELLARYKLKESQLPRIQAGDPVARYFGLKRGQVIKI 193
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 194 IRPSETAGRYITYRLV 209
>gi|323349753|gb|EGA83968.1| Rpb5p [Saccharomyces cerevisiae Lalvin QA23]
Length = 215
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 76/157 (48%), Gaps = 3/157 (1%)
Query: 18 GYNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG 77
+ PTE +S F D GS L + + + + + + E F
Sbjct: 59 SFQANPTEESISKFPDMGS---LWVEFCDEPSVGVKTMKTFVIHIQEKXFQTGIFVYQNN 115
Query: 78 QDPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL 137
P +L SI + + L+VNIT H L PKH L+ EK +LLK+Y ++E QL
Sbjct: 116 ITPSAMKLVPSIPPATIETFNEAALVVNITHHELVPKHIRLSXDEKRELLKRYRLKESQL 175
Query: 138 PRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
PR+ + D +A Y GL+RG+VVK+ E + + +YR
Sbjct: 176 PRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYR 212
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPS 96
R+ R + + RTV EM+KDRGY + E+ L ++DF+A Y D R +S Q++P+
Sbjct: 7 RNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYC-DSMGRPQRKMMSFQANPT 65
Query: 97 K 97
+
Sbjct: 66 E 66
>gi|292611220|ref|XP_002661023.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Danio rerio]
Length = 210
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 54/76 (71%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E +LL +Y ++E QLPR+ D +A+Y+GL+RGQVVK+
Sbjct: 134 ELLINITEHELVPEHIVMTKEEVTELLARYKLKETQLPRIQCSDPVARYFGLKRGQVVKI 193
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 194 IRPSETAGRYITYRLV 209
>gi|149034606|gb|EDL89343.1| rCG29511, isoform CRA_a [Rattus norvegicus]
gi|149034607|gb|EDL89344.1| rCG29511, isoform CRA_a [Rattus norvegicus]
gi|149034608|gb|EDL89345.1| rCG29511, isoform CRA_a [Rattus norvegicus]
Length = 202
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQVVK+
Sbjct: 126 ELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYFGIKRGQVVKI 185
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 186 IRPSETAGRYITYRLV 201
>gi|355712729|gb|AES04446.1| polymerase II polypeptide E, 25kDa [Mustela putorius furo]
Length = 209
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQVVKV
Sbjct: 134 ELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKV 193
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 194 IRPSETAGRYITYRLV 209
>gi|225681878|gb|EEH20162.1| DNA-directed RNA polymerases I [Paracoccidioides brasiliensis Pb03]
Length = 171
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNIT H L PKH +L+ +EK++LL++Y ++E QLPR+ D +A+Y GL RGQVVK+
Sbjct: 95 ELLVNITHHELVPKHILLSAEEKKRLLQRYRLKESQLPRIQSGDPVAKYLGLRRGQVVKI 154
Query: 161 TYSGEITESHVTYRCV 176
E + +YR V
Sbjct: 155 IRKSETAGRYASYRWV 170
>gi|324521545|gb|ADY47878.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Ascaris
suum]
Length = 211
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 54/76 (71%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+L+VNIT+H L P+H V+ ++EK +LL +Y +++ QLPR+ D +A+Y+GL RGQVVK+
Sbjct: 135 ELMVNITEHELVPEHVVMNNEEKTELLARYKLKDTQLPRIQMTDPVARYFGLRRGQVVKI 194
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 195 IRPSETAGRYITYRHV 210
>gi|380800089|gb|AFE71920.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1, partial
[Macaca mulatta]
Length = 181
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQVVK+
Sbjct: 105 ELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKI 164
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 165 IRPSETAGRYITYRLV 180
>gi|242017042|ref|XP_002429002.1| DNA-directed RNA polymerase II 23 kDa polypeptide, putative
[Pediculus humanus corporis]
gi|212513848|gb|EEB16264.1| DNA-directed RNA polymerase II 23 kDa polypeptide, putative
[Pediculus humanus corporis]
Length = 210
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 57/77 (74%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++LL+NIT+H L P+H V+T +EK++LL++Y ++E QL R+ D +A+Y+GL+RGQVVK
Sbjct: 133 SELLINITEHELVPEHVVMTPEEKQELLQRYKLKENQLMRIQAGDPVARYFGLKRGQVVK 192
Query: 160 VTYSGEITESHVTYRCV 176
+ E +++YR V
Sbjct: 193 IVRPSETAGRYISYRLV 209
>gi|225717382|gb|ACO14537.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Esox
lucius]
Length = 210
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 54/76 (71%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E +LL +Y ++E QLPR+ D +A+Y+GL+RGQVVK+
Sbjct: 134 ELLINITEHELVPEHIVMTKEELSELLLRYKLKESQLPRIQAGDPVARYFGLKRGQVVKI 193
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 194 IRPSETAGRYITYRLV 209
>gi|441656609|ref|XP_004093285.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases I, II,
and III subunit RPABC1 [Nomascus leucogenys]
Length = 210
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQVVK+
Sbjct: 134 ELLINITEHELVPEHVVMTKEEMTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKI 193
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 194 IRPSETAGRYITYRLV 209
>gi|209732756|gb|ACI67247.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Salmo
salar]
gi|303659190|gb|ADM15954.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Salmo
salar]
Length = 210
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 54/76 (71%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E +LL +Y ++E QLPR+ D +A+Y+GL+RGQVVK+
Sbjct: 134 ELLINITEHELVPEHIVMTKEELSELLLRYKLKESQLPRIQAGDPVARYFGLKRGQVVKI 193
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 194 IRPSETAGRYITYRLV 209
>gi|119589956|gb|EAW69550.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa, isoform
CRA_c [Homo sapiens]
gi|194381594|dbj|BAG58751.1| unnamed protein product [Homo sapiens]
Length = 117
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQVVK+
Sbjct: 41 ELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKI 100
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 101 IRPSETAGRYITYRLV 116
>gi|48124579|ref|XP_396561.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Apis mellifera]
gi|340724888|ref|XP_003400810.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Bombus terrestris]
gi|380012055|ref|XP_003690105.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Apis florea]
Length = 210
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 55/77 (71%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++LL+NIT+H L P+H VLT EKE+LL +Y ++E QL R+ D +A+Y+GL+RGQVVK
Sbjct: 133 SELLINITEHELVPEHIVLTPDEKEELLTRYKLKENQLMRIQAGDPVARYFGLKRGQVVK 192
Query: 160 VTYSGEITESHVTYRCV 176
+ E +++YR V
Sbjct: 193 IIRPSETAGRYISYRLV 209
Score = 38.9 bits (89), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ + + R+TV+++ DRGY V E++ +++ F+ +G P R L + ++H
Sbjct: 6 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHN 65
Query: 93 SDPSKRI 99
DP+ ++
Sbjct: 66 DDPTDQL 72
>gi|355702921|gb|EHH29412.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Macaca
mulatta]
Length = 210
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQVVK+
Sbjct: 134 ELLINITEHELVPEHVVMTKEEVSELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKI 193
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 194 IRPSETAGRYITYRLV 209
>gi|410342181|gb|JAA40037.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Pan
troglodytes]
gi|410342183|gb|JAA40038.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Pan
troglodytes]
gi|410342185|gb|JAA40039.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Pan
troglodytes]
Length = 217
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQVVK+
Sbjct: 134 ELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKI 193
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 194 IRPSETAGRYITYRLV 209
>gi|326934422|ref|XP_003213289.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Meleagris gallopavo]
Length = 209
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQVVK+
Sbjct: 133 ELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKI 192
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 193 IRPSETAGRYITYRLV 208
>gi|344243380|gb|EGV99483.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Cricetulus griseus]
Length = 218
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQVVK+
Sbjct: 142 ELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYFGIKRGQVVKI 201
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 202 IRPSETAGRYITYRLV 217
>gi|197098756|ref|NP_001126823.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Pongo
abelii]
gi|75054736|sp|Q5R587.1|RPAB1_PONAB RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=DNA-directed RNA polymerase II
subunit E; AltName: Full=RPB5 homolog
gi|55732763|emb|CAH93079.1| hypothetical protein [Pongo abelii]
Length = 210
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQVVK+
Sbjct: 134 ELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKI 193
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 194 IRPSETAGRYITYRLV 209
>gi|417408698|gb|JAA50889.1| Putative dna-directed rna polymerases i ii and iii subunit
rpabc1-like isoform 2, partial [Desmodus rotundus]
Length = 212
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQVVK+
Sbjct: 136 ELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKI 195
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 196 IRPSETAGRYITYRLV 211
>gi|281341350|gb|EFB16934.1| hypothetical protein PANDA_012732 [Ailuropoda melanoleuca]
Length = 193
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQVVK+
Sbjct: 117 ELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKI 176
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 177 IRPSETAGRYITYRLV 192
>gi|258563314|ref|XP_002582402.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Uncinocarpus
reesii 1704]
gi|237907909|gb|EEP82310.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Uncinocarpus
reesii 1704]
Length = 239
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 52/76 (68%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNIT H L PKH +L+ +EK++LL +Y ++E QLPR+ D +A+Y GL RGQVVK+
Sbjct: 163 ELLVNITHHELVPKHLLLSAEEKKRLLHRYRLKESQLPRIQIGDPVAKYLGLRRGQVVKI 222
Query: 161 TYSGEITESHVTYRCV 176
E + +YR V
Sbjct: 223 IRKSETAGRYASYRWV 238
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD------PDVDRLRIS 88
+R+ R + + +TV EML DRGY V E+ +S+ DFR+ Y P +++RIS
Sbjct: 13 ANREMTRLWRTWKTVFEMLLDRGYEVTEEEVKISLNDFRSKYADTLGFPDAPSRNKMRIS 72
>gi|226371984|gb|ACO51617.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Rana
catesbeiana]
Length = 210
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 52/76 (68%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T E +LL +Y + E QLPR+ D +A+Y+GL+RGQVVK+
Sbjct: 134 ELLINITEHELVPEHVVMTKDEVTELLARYKLRESQLPRIQAGDPVARYFGLKRGQVVKI 193
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 194 IRPSETAGRYITYRLV 209
>gi|62858213|ref|NP_001016473.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Xenopus
(Silurana) tropicalis]
gi|148225220|ref|NP_001083516.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Xenopus
laevis]
gi|38051843|gb|AAH60467.1| MGC68604 protein [Xenopus laevis]
gi|89272916|emb|CAJ82278.1| polymerase (RNA) II (DNA directed) polypeptide E [Xenopus
(Silurana) tropicalis]
gi|163916440|gb|AAI57232.1| polymerase (RNA) II (DNA directed) polypeptide E [Xenopus
(Silurana) tropicalis]
Length = 210
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 52/76 (68%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T E +LL +Y + E QLPR+ D +A+Y+GL+RGQVVK+
Sbjct: 134 ELLINITEHELVPEHVVMTKDEVTELLARYKLRESQLPRIQAGDPVARYFGLKRGQVVKI 193
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 194 IRPSETAGRYITYRLV 209
>gi|350537103|ref|NP_001232745.1| putative DNA directed RNA polymerase II polypeptide E [Taeniopygia
guttata]
gi|118103219|ref|XP_418224.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Gallus gallus]
gi|126323555|ref|XP_001365263.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Monodelphis domestica]
gi|395513329|ref|XP_003760879.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Sarcophilus harrisii]
gi|197127122|gb|ACH43620.1| putative DNA directed RNA polymerase II polypeptide E [Taeniopygia
guttata]
gi|387018228|gb|AFJ51232.1| putative DNA directed RNA polymerase II polypeptide E [Crotalus
adamanteus]
Length = 210
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQVVK+
Sbjct: 134 ELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKI 193
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 194 IRPSETAGRYITYRLV 209
>gi|307214976|gb|EFN89821.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Harpegnathos saltator]
Length = 210
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 55/77 (71%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++LL+NIT+H L P+H VLT EKE+LL +Y ++E QL R+ D +A+Y+GL+RGQVVK
Sbjct: 133 SELLINITEHELVPEHIVLTPDEKEELLTRYKLKENQLMRIQAGDPVARYFGLKRGQVVK 192
Query: 160 VTYSGEITESHVTYRCV 176
+ E +++YR V
Sbjct: 193 IIRPSETAGRYISYRLV 209
>gi|396500613|ref|XP_003845762.1| hypothetical protein LEMA_P010700.1 [Leptosphaeria maculans JN3]
gi|312222343|emb|CBY02283.1| hypothetical protein LEMA_P010700.1 [Leptosphaeria maculans JN3]
Length = 412
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 47/60 (78%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNITKH L PKH +L+ +EK++LLK+Y ++E QLPR+ D +A+Y GL RG VVK+
Sbjct: 158 DLLVNITKHELVPKHVLLSAEEKQQLLKRYRLKETQLPRIQSTDPVAKYLGLRRGSVVKI 217
Score = 39.3 bits (90), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG-QDPDVDRLRISIS 90
D S +R + RT EM++DRGY V + +S+ +F + +G +D + DR R++ S
Sbjct: 4 DKASPSIIRLWRVWRTAKEMMRDRGYMVLEEDTTMSLAEFTSKFGREDGEPDRSRLNFS 62
>gi|124249077|ref|NP_079830.2| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Mus
musculus]
gi|157819761|ref|NP_001103084.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Rattus
norvegicus]
gi|54036414|sp|Q80UW8.1|RPAB1_MOUSE RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=DNA-directed RNA polymerase II
subunit E; AltName: Full=RPB5 homolog
gi|182676546|sp|B0BNE2.1|RPAB1_RAT RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=DNA-directed RNA polymerase II
subunit E; AltName: Full=RPB5 homolog
gi|28374319|gb|AAH45521.1| Polymerase (RNA) II (DNA directed) polypeptide E [Mus musculus]
gi|74194812|dbj|BAE25998.1| unnamed protein product [Mus musculus]
gi|74198334|dbj|BAE43245.1| unnamed protein product [Mus musculus]
gi|74205025|dbj|BAE20985.1| unnamed protein product [Mus musculus]
gi|74208142|dbj|BAE26292.1| unnamed protein product [Mus musculus]
gi|148699661|gb|EDL31608.1| mCG13422, isoform CRA_a [Mus musculus]
gi|149034612|gb|EDL89349.1| rCG29511, isoform CRA_e [Rattus norvegicus]
gi|149034613|gb|EDL89350.1| rCG29511, isoform CRA_e [Rattus norvegicus]
gi|149034614|gb|EDL89351.1| rCG29511, isoform CRA_e [Rattus norvegicus]
gi|165971683|gb|AAI58788.1| Polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Rattus
norvegicus]
Length = 210
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQVVK+
Sbjct: 134 ELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYFGIKRGQVVKI 193
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 194 IRPSETAGRYITYRLV 209
>gi|14589951|ref|NP_002686.2| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Homo
sapiens]
gi|149761124|ref|XP_001496313.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Equus caballus]
gi|301776310|ref|XP_002923555.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 1 [Ailuropoda melanoleuca]
gi|301776312|ref|XP_002923556.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 2 [Ailuropoda melanoleuca]
gi|335282254|ref|XP_003354010.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 1 [Sus scrofa]
gi|335282256|ref|XP_003354011.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 2 [Sus scrofa]
gi|348550374|ref|XP_003461007.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cavia porcellus]
gi|395831291|ref|XP_003788737.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Otolemur garnettii]
gi|402903526|ref|XP_003914616.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Papio anubis]
gi|403308121|ref|XP_003944520.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 1 [Saimiri boliviensis boliviensis]
gi|403308123|ref|XP_003944521.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 2 [Saimiri boliviensis boliviensis]
gi|403308125|ref|XP_003944522.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 3 [Saimiri boliviensis boliviensis]
gi|403308127|ref|XP_003944523.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 4 [Saimiri boliviensis boliviensis]
gi|426229485|ref|XP_004008821.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 1 [Ovis aries]
gi|426229487|ref|XP_004008822.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 2 [Ovis aries]
gi|426386425|ref|XP_004059685.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 1 [Gorilla gorilla gorilla]
gi|426386427|ref|XP_004059686.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 2 [Gorilla gorilla gorilla]
gi|426386429|ref|XP_004059687.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 3 [Gorilla gorilla gorilla]
gi|426386431|ref|XP_004059688.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 4 [Gorilla gorilla gorilla]
gi|678549|gb|AAA62401.1| RNA polymerase II 23kD subunit [Homo sapiens]
gi|13325244|gb|AAH04441.1| Polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Homo
sapiens]
gi|119589954|gb|EAW69548.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa, isoform
CRA_b [Homo sapiens]
gi|119589955|gb|EAW69549.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa, isoform
CRA_b [Homo sapiens]
gi|189069173|dbj|BAG35511.1| unnamed protein product [Homo sapiens]
gi|208967082|dbj|BAG73555.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [synthetic
construct]
gi|296485369|tpg|DAA27484.1| TPA: DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Bos taurus]
gi|312152670|gb|ADQ32847.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [synthetic
construct]
gi|355755269|gb|EHH59016.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Macaca
fascicularis]
gi|387542622|gb|AFJ71938.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Macaca
mulatta]
gi|410264992|gb|JAA20462.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Pan
troglodytes]
gi|410264994|gb|JAA20463.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Pan
troglodytes]
gi|410299730|gb|JAA28465.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Pan
troglodytes]
gi|410299732|gb|JAA28466.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Pan
troglodytes]
gi|440910422|gb|ELR60220.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Bos
grunniens mutus]
Length = 210
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQVVK+
Sbjct: 134 ELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKI 193
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 194 IRPSETAGRYITYRLV 209
>gi|116242767|sp|P19388.4|RPAB1_HUMAN RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=DNA-directed RNA polymerase II 23
kDa polypeptide; AltName: Full=DNA-directed RNA
polymerase II subunit E; AltName: Full=RPB5 homolog;
AltName: Full=XAP4
gi|2896797|gb|AAC03238.1| RPB5_Human [Homo sapiens]
gi|311349818|gb|ADP92094.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349820|gb|ADP92095.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349822|gb|ADP92096.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349824|gb|ADP92097.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349826|gb|ADP92098.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349828|gb|ADP92099.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349830|gb|ADP92100.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349832|gb|ADP92101.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349834|gb|ADP92102.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349836|gb|ADP92103.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349838|gb|ADP92104.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349840|gb|ADP92105.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349842|gb|ADP92106.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349844|gb|ADP92107.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349846|gb|ADP92108.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349848|gb|ADP92109.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349850|gb|ADP92110.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349852|gb|ADP92111.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349854|gb|ADP92112.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349856|gb|ADP92113.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349858|gb|ADP92114.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349860|gb|ADP92115.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349862|gb|ADP92116.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349864|gb|ADP92117.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349866|gb|ADP92118.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349868|gb|ADP92119.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349870|gb|ADP92120.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349872|gb|ADP92121.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349874|gb|ADP92122.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349876|gb|ADP92123.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349878|gb|ADP92124.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349880|gb|ADP92125.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349882|gb|ADP92126.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349884|gb|ADP92127.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349886|gb|ADP92128.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349888|gb|ADP92129.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349890|gb|ADP92130.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349892|gb|ADP92131.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349894|gb|ADP92132.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349896|gb|ADP92133.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
Length = 210
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQVVK+
Sbjct: 134 ELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKI 193
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 194 IRPSETAGRYITYRLV 209
>gi|1060912|dbj|BAA07406.1| RPB5 [Homo sapiens]
Length = 210
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 52/76 (68%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A+Y+G+ RGQVVK+
Sbjct: 134 ELLINITEHELVPEHVVMTKEEVSELLARYKLRENQLPRIQAGDPVARYFGIRRGQVVKI 193
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 194 IRPSETAGRYITYRLV 209
>gi|351714028|gb|EHB16947.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Heterocephalus glaber]
Length = 292
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQVVK+
Sbjct: 216 ELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKI 275
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 276 IRPSETAGRYITYRLV 291
Score = 39.7 bits (91), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ R + R+T++++ DRGY V E++ ++++F++ +G P L + ++H
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKSQFGDKPSEGHPRRTDLTVLVAHN 65
Query: 93 SDPSKRI 99
DP+ ++
Sbjct: 66 DDPTDQM 72
>gi|383865249|ref|XP_003708087.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Megachile rotundata]
Length = 210
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 55/77 (71%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++LL+NIT+H L P+H VLT EKE+LL +Y ++E QL R+ D +A+Y+GL+RGQVVK
Sbjct: 133 SELLINITEHELVPEHIVLTPDEKEELLGRYKLKENQLMRIQAGDPVARYFGLKRGQVVK 192
Query: 160 VTYSGEITESHVTYRCV 176
+ E +++YR V
Sbjct: 193 IIRPSETAGRYISYRLV 209
>gi|321475403|gb|EFX86366.1| hypothetical protein DAPPUDRAFT_308488 [Daphnia pulex]
Length = 210
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 56/77 (72%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++LL+NIT+H L P+H VLT +EK++LL +Y ++E QL R+ D +A+Y+GL+RGQVVK
Sbjct: 133 SELLINITEHELVPEHVVLTPEEKQELLCRYKLKENQLMRIQMGDPVARYFGLKRGQVVK 192
Query: 160 VTYSGEITESHVTYRCV 176
+ E +++YR V
Sbjct: 193 IVRPSETAGRYISYRLV 209
>gi|402084014|gb|EJT79032.1| DNA-directed RNA polymerase I [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 233
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
D+LVNIT H L PKH +L+ EK LL++Y ++E QLPR+ KD +A+Y GL+RG VVK+
Sbjct: 157 DMLVNITHHELVPKHVLLSKIEKAALLERYRLKETQLPRIQVKDPVARYLGLKRGNVVKI 216
Query: 161 TYSGEITESHVTYRCV 176
S E + +YR
Sbjct: 217 IRSSETAGRYASYRLT 232
Score = 38.9 bits (89), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 13/84 (15%)
Query: 36 SRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY---GQDPDVDRLRISISHQ 92
+R++ R + + RT EML+DRGY ++ E+N+S+ F Y + D +L+ S
Sbjct: 8 TREARRLWRAWRTAHEMLQDRGYELSQEEVNISLDRFLQQYTDGAGNVDASKLKFS---- 63
Query: 93 SDPSKRITDLLVNITKHVLKPKHQ 116
+ PS+ + I KH P Q
Sbjct: 64 AHPSEAM------IKKHTPPPTEQ 81
>gi|46255774|gb|AAH34144.1| Polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Homo
sapiens]
Length = 210
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQVVK+
Sbjct: 134 ELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGVKRGQVVKI 193
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 194 IRPSETAGRYITYRLV 209
>gi|428177456|gb|EKX46336.1| hypothetical protein GUITHDRAFT_163048 [Guillardia theta CCMP2712]
Length = 231
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 54/75 (72%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+L+VNIT+H + PKH++++ EK+KLL++Y + + QLPR+L D +A+Y GL RG VV+
Sbjct: 154 VELVVNITEHEMVPKHRIMSGVEKKKLLQRYKVNDDQLPRILISDPVAKYLGLRRGNVVE 213
Query: 160 VTYSGEITESHVTYR 174
+T + +VTYR
Sbjct: 214 ITRDSDTAGRYVTYR 228
>gi|50290313|ref|XP_447588.1| hypothetical protein [Candida glabrata CBS 138]
gi|54036350|sp|Q6FQA6.1|RPAB1_CANGA RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1
gi|49526898|emb|CAG60525.1| unnamed protein product [Candida glabrata]
Length = 215
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 79/159 (49%), Gaps = 7/159 (4%)
Query: 18 GYNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG 77
+ PTE ++ F D G+ L + + + + + + E F IY
Sbjct: 59 SFQANPTEESMTKFPDMGT---LWVEFCDEPSVGVKTMKTFVIHIQEKQFQTGIF--IYQ 113
Query: 78 QD--PDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEK 135
+ P +L SI + + L+VNIT H L PKH L ++EK +LLK+Y ++E
Sbjct: 114 NNITPSAMKLVPSIPPATIETFHEAALVVNITHHDLVPKHIRLNEEEKAELLKRYRLKES 173
Query: 136 QLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
QLPR+ + D +A Y GL+RG+VVK+ E + +YR
Sbjct: 174 QLPRIQRADPVALYLGLKRGEVVKIIRKSETAGRYASYR 212
Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSK 97
R + + RTV EM++DRGY +A E++L+++DF+ Y D R +S Q++P++
Sbjct: 11 RLWRTFRTVKEMVRDRGYFIAQEELDLTLEDFKVKYC-DSMGRAQRKMMSFQANPTE 66
>gi|350422012|ref|XP_003493028.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Bombus impatiens]
Length = 210
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 55/77 (71%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++LL+NIT+H L P+H VLT EKE+LL +Y ++E QL R+ D +A+Y+GL+RGQVVK
Sbjct: 133 SELLINITEHELVPEHIVLTPDEKEELLTRYKLKENQLMRIQVGDPVARYFGLKRGQVVK 192
Query: 160 VTYSGEITESHVTYRCV 176
+ E +++YR V
Sbjct: 193 IIRPSETAGRYISYRLV 209
Score = 38.9 bits (89), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ + + R+TV+++ DRGY V E++ +++ F+ +G P R L + ++H
Sbjct: 6 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHN 65
Query: 93 SDPSKRI 99
DP+ ++
Sbjct: 66 DDPTDQL 72
>gi|320582063|gb|EFW96281.1| RNA polymerase subunit ABC27 [Ogataea parapolymorpha DL-1]
Length = 214
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 53/75 (70%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
D++VNIT H L PKH L+ +EK++LL +Y ++E QLPR+ ++D +A+Y GL RGQVVK
Sbjct: 137 ADIIVNITHHELVPKHIRLSTEEKKELLARYRLKESQLPRIQREDPVARYLGLRRGQVVK 196
Query: 160 VTYSGEITESHVTYR 174
+ E + + +YR
Sbjct: 197 IIRRSETSGRYASYR 211
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 32 VDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFR 73
+D+ R + R + + RTV EM++DRGY + EI++S+ FR
Sbjct: 1 MDDIERTTSRLWRAYRTVKEMVRDRGYYITQEEIDISLDQFR 42
>gi|194752750|ref|XP_001958682.1| GF12445 [Drosophila ananassae]
gi|190619980|gb|EDV35504.1| GF12445 [Drosophila ananassae]
Length = 210
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 56/77 (72%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++LL+NIT+H L P+H V+T +EK++LL +Y ++E L R+ D +A+Y+GL+RGQVVK
Sbjct: 133 SELLINITEHELVPEHVVMTAEEKQELLSRYKLKENMLMRIQAGDPVARYFGLKRGQVVK 192
Query: 160 VTYSGEITESHVTYRCV 176
+ S E +++YR V
Sbjct: 193 IIRSSETAGRYISYRLV 209
>gi|406866728|gb|EKD19767.1| RNA polymerase subunit [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 231
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
DLLVNIT H L PKH L+ EK+ LL++Y +++ QLPR+ D +A+Y GL RGQVVK
Sbjct: 154 ADLLVNITHHELVPKHITLSRDEKKALLERYRLKDTQLPRIQLNDPVAKYLGLRRGQVVK 213
Query: 160 VTYSGEITESHVTYR-CV 176
+ E + +YR CV
Sbjct: 214 IIRKSETAGRYASYRLCV 231
Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY 76
+ G R++ R + + RTV EM+ DRGY ++ E+ +S DF++ Y
Sbjct: 12 EAGDREAARLWRAWRTVHEMVADRGYELSEEEVKISFADFKSTY 55
>gi|229366774|gb|ACQ58367.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Anoplopoma fimbria]
Length = 210
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 54/76 (71%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V++ +E +LL +Y ++E QLPR+ D +A+Y+GL+RGQVVK+
Sbjct: 134 ELLINITEHELVPEHIVMSKEEVVELLARYKLKESQLPRIQAGDPVARYFGLKRGQVVKI 193
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 194 IRPSETAGRYITYRLV 209
>gi|357609342|gb|EHJ66401.1| hypothetical protein KGM_04074 [Danaus plexippus]
Length = 210
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 55/77 (71%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++LL+NIT+H L P+H VLT EK++LL +Y ++E L R+ D +A+Y+GL+RGQVVK
Sbjct: 133 SELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARYFGLKRGQVVK 192
Query: 160 VTYSGEITESHVTYRCV 176
+ S E +++YR V
Sbjct: 193 IIRSSETAGRYISYRLV 209
>gi|330040362|ref|XP_003239875.1| RNA polymerase I, II and III 24.3 kDa subunit [Cryptomonas
paramecium]
gi|327206800|gb|AEA38977.1| RNA polymerase I, II and III 24.3 kDa subunit [Cryptomonas
paramecium]
Length = 216
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 58/78 (74%), Gaps = 1/78 (1%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++L++NIT H L PKH++L+ +E + L K+Y I+E QLP++ KKD I++Y+G+++ Q+V+
Sbjct: 138 SELIINITHHTLVPKHEILSLEESKCLFKRYYIKETQLPKIQKKDPISRYFGIQKNQIVR 197
Query: 160 VTYSGEITESHVTY-RCV 176
+ E + ++TY RC+
Sbjct: 198 IIRPSENSGRYITYRRCI 215
>gi|19922004|ref|NP_610630.1| Rpb5, isoform A [Drosophila melanogaster]
gi|442623281|ref|NP_001260878.1| Rpb5, isoform B [Drosophila melanogaster]
gi|194884129|ref|XP_001976148.1| GG22706 [Drosophila erecta]
gi|195333273|ref|XP_002033316.1| GM20482 [Drosophila sechellia]
gi|195483584|ref|XP_002090346.1| GE13062 [Drosophila yakuba]
gi|195551744|ref|XP_002076283.1| GD15257 [Drosophila simulans]
gi|7303678|gb|AAF58728.1| Rpb5, isoform A [Drosophila melanogaster]
gi|17945808|gb|AAL48951.1| RE34924p [Drosophila melanogaster]
gi|190659335|gb|EDV56548.1| GG22706 [Drosophila erecta]
gi|194125286|gb|EDW47329.1| GM20482 [Drosophila sechellia]
gi|194176447|gb|EDW90058.1| GE13062 [Drosophila yakuba]
gi|194201932|gb|EDX15508.1| GD15257 [Drosophila simulans]
gi|220948406|gb|ACL86746.1| Rpb5-PA [synthetic construct]
gi|220957602|gb|ACL91344.1| Rpb5-PA [synthetic construct]
gi|440214282|gb|AGB93411.1| Rpb5, isoform B [Drosophila melanogaster]
Length = 210
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 56/77 (72%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++LL+NIT+H L P+H V+T +EK++LL +Y ++E L R+ D +A+Y+GL+RGQVVK
Sbjct: 133 SELLINITEHELVPEHVVMTVEEKQELLSRYKLKENMLMRIQAGDPVARYFGLKRGQVVK 192
Query: 160 VTYSGEITESHVTYRCV 176
+ S E +++YR V
Sbjct: 193 IIRSSETAGRYISYRLV 209
>gi|145481865|ref|XP_001426955.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124394033|emb|CAK59557.1| unnamed protein product [Paramecium tetraurelia]
Length = 223
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 51/75 (68%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DL+ ++TKH L P+H +L D+EKE LLKKY + + QLPR+L+ D IA++ GL G VVK+
Sbjct: 147 DLVYDVTKHELVPQHIILNDREKELLLKKYGLVDNQLPRILQSDPIARFLGLHHGDVVKI 206
Query: 161 TYSGEITESHVTYRC 175
E +VTYR
Sbjct: 207 IRKSETAGLYVTYRI 221
>gi|195164101|ref|XP_002022887.1| GL16482 [Drosophila persimilis]
gi|198471627|ref|XP_002133786.1| GA22602 [Drosophila pseudoobscura pseudoobscura]
gi|194104949|gb|EDW26992.1| GL16482 [Drosophila persimilis]
gi|198146002|gb|EDY72413.1| GA22602 [Drosophila pseudoobscura pseudoobscura]
Length = 210
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 56/77 (72%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++LL+NIT+H L P+H V+T +EK++LL +Y ++E L R+ D +A+Y+GL+RGQVVK
Sbjct: 133 SELLINITEHELVPEHVVMTVEEKQELLSRYKLKENMLMRIQAGDPVARYFGLKRGQVVK 192
Query: 160 VTYSGEITESHVTYRCV 176
+ S E +++YR V
Sbjct: 193 IIRSSETAGRYISYRLV 209
>gi|145481253|ref|XP_001426649.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124393725|emb|CAK59251.1| unnamed protein product [Paramecium tetraurelia]
Length = 224
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 51/75 (68%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DL+ ++TKH L P+H +L D+EKE LLKKY + + QLPR+L+ D IA++ GL G VVK+
Sbjct: 148 DLVYDVTKHELVPQHIILNDKEKELLLKKYGMVDNQLPRILQSDPIARFLGLHHGDVVKI 207
Query: 161 TYSGEITESHVTYRC 175
E +VTYR
Sbjct: 208 IRKSETAGLYVTYRI 222
>gi|198471708|ref|XP_002133816.1| GA22581 [Drosophila pseudoobscura pseudoobscura]
gi|198146041|gb|EDY72443.1| GA22581 [Drosophila pseudoobscura pseudoobscura]
Length = 320
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 54/75 (72%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++L +N+TKH L P+H VL++ EK++L + Y ++E Q+ RML D +A+YYGL+ GQVVK
Sbjct: 133 SELTINVTKHELVPQHVVLSEVEKKQLFRCYRLKESQMMRMLSSDPVARYYGLKPGQVVK 192
Query: 160 VTYSGEITESHVTYR 174
+ + E +++YR
Sbjct: 193 IVRASESAGKYISYR 207
>gi|195426896|ref|XP_002061524.1| GK20665 [Drosophila willistoni]
gi|194157609|gb|EDW72510.1| GK20665 [Drosophila willistoni]
Length = 210
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 56/77 (72%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++LL+NIT+H L P+H V+T +EK++LL +Y ++E L R+ D +A+Y+GL+RGQVVK
Sbjct: 133 SELLINITEHDLVPEHVVMTAEEKQELLSRYKLKENMLMRIQAGDPVARYFGLKRGQVVK 192
Query: 160 VTYSGEITESHVTYRCV 176
+ + E +++YR V
Sbjct: 193 IIRASETAGRYISYRLV 209
>gi|195026900|ref|XP_001986362.1| GH20567 [Drosophila grimshawi]
gi|193902362|gb|EDW01229.1| GH20567 [Drosophila grimshawi]
Length = 210
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 56/77 (72%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++LL+NIT+H L P+H V+T ++K++LL +Y ++E L R+ D +A+Y+GL+RGQVVK
Sbjct: 133 SELLINITEHELVPEHVVMTAEDKQELLSRYKLKENMLMRIQAGDPVARYFGLKRGQVVK 192
Query: 160 VTYSGEITESHVTYRCV 176
+ S E +++YR V
Sbjct: 193 IIRSSETAGRYISYRLV 209
>gi|195119282|ref|XP_002004160.1| GI19761 [Drosophila mojavensis]
gi|195401380|ref|XP_002059291.1| GJ18195 [Drosophila virilis]
gi|193909228|gb|EDW08095.1| GI19761 [Drosophila mojavensis]
gi|194142297|gb|EDW58703.1| GJ18195 [Drosophila virilis]
Length = 210
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 56/77 (72%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++LL+NIT+H L P+H V+T ++K++LL +Y ++E L R+ D +A+Y+GL+RGQVVK
Sbjct: 133 SELLINITEHELVPEHVVMTAEDKQELLSRYKLKENMLMRIQAGDPVARYFGLKRGQVVK 192
Query: 160 VTYSGEITESHVTYRCV 176
+ S E +++YR V
Sbjct: 193 IIRSSETAGRYISYRLV 209
>gi|15242916|ref|NP_200606.1| RNA polymerase II fifth largest subunit, C [Arabidopsis thaliana]
gi|9758367|dbj|BAB08868.1| RNA polymerase I, II and III 24.3 kDa subunit-like protein
[Arabidopsis thaliana]
gi|332009598|gb|AED96981.1| RNA polymerase II fifth largest subunit, C [Arabidopsis thaliana]
Length = 210
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 53/75 (70%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+L+ NIT+H L K+ VL DQ K+KLL Y++++ QLPR+L D +A+YYGL+RGQVVK
Sbjct: 133 AELVTNITEHKLVNKYYVLDDQAKKKLLNTYTVQDTQLPRILVTDPLARYYGLKRGQVVK 192
Query: 160 VTYSGEITESHVTYR 174
+ S + + TYR
Sbjct: 193 IRRSDATSLDYYTYR 207
>gi|346469147|gb|AEO34418.1| hypothetical protein [Amblyomma maculatum]
Length = 210
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 54/77 (70%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++LL+NIT+H L P+H VLT +EK +LL +Y ++E L R+ D +A+Y+GL+RGQVVK
Sbjct: 133 SELLINITEHELVPEHVVLTPEEKAELLARYKLKENHLMRIQAGDPVARYFGLKRGQVVK 192
Query: 160 VTYSGEITESHVTYRCV 176
+ E +++YR V
Sbjct: 193 IIRPSETAGRYISYRLV 209
>gi|289740815|gb|ADD19155.1| RNA polymerase 25-kDa subunit [Glossina morsitans morsitans]
Length = 210
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 55/77 (71%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++LL+NIT+H L P+H V+T +EK++LL +Y ++E L R+ D +A+Y+GL+RGQVVK
Sbjct: 133 SELLINITEHELVPEHVVMTPEEKQELLARYKLKENMLMRIQAGDPVARYFGLKRGQVVK 192
Query: 160 VTYSGEITESHVTYRCV 176
+ E +++YR V
Sbjct: 193 IIRPSETAGRYISYRLV 209
>gi|31235339|ref|XP_319221.1| AGAP010064-PA [Anopheles gambiae str. PEST]
gi|157128329|ref|XP_001661404.1| DNA-directed RNA polymerase II [Aedes aegypti]
gi|170059825|ref|XP_001865530.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Culex
quinquefasciatus]
gi|30174740|gb|EAA43596.1| AGAP010064-PA [Anopheles gambiae str. PEST]
gi|108872649|gb|EAT36874.1| AAEL011087-PA [Aedes aegypti]
gi|167878475|gb|EDS41858.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Culex
quinquefasciatus]
Length = 210
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 55/77 (71%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++LL+NIT+H L P+H V+T +EK++LL +Y ++E L R+ D +A+Y+GL+RGQVVK
Sbjct: 133 SELLINITEHELVPEHVVMTPEEKQELLARYKLKENMLMRIQAGDPVARYFGLKRGQVVK 192
Query: 160 VTYSGEITESHVTYRCV 176
+ E +++YR V
Sbjct: 193 IIRPSETAGRYISYRLV 209
>gi|149287100|gb|ABR23449.1| 25-kDa subunit RNA polymerase [Ornithodoros parkeri]
Length = 210
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 54/77 (70%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++LL+NIT+H L P+H VLT +EK +LL +Y ++E L R+ D +A+Y+GL+RGQVVK
Sbjct: 133 SELLINITEHELVPEHVVLTPEEKAELLARYKLKENHLMRIQAGDPVARYFGLKRGQVVK 192
Query: 160 VTYSGEITESHVTYRCV 176
+ E +++YR V
Sbjct: 193 IIRPSETAGRYISYRLV 209
>gi|312383157|gb|EFR28348.1| hypothetical protein AND_03878 [Anopheles darlingi]
Length = 210
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 55/77 (71%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++LL+NIT+H L P+H V+T +EK++LL +Y ++E L R+ D +A+Y+GL+RGQVVK
Sbjct: 133 SELLINITEHELVPEHVVMTPEEKQELLARYKLKENMLMRIQAGDPVARYFGLKRGQVVK 192
Query: 160 VTYSGEITESHVTYRCV 176
+ E +++YR V
Sbjct: 193 IIRPSETAGRYISYRLV 209
>gi|68074991|ref|XP_679412.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56500156|emb|CAI00596.1| hypothetical protein PB108754.00.0 [Plasmodium berghei]
Length = 117
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 49/74 (66%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+VNITKH L P+H LT EK LL++Y I+E +LPR+ D + +Y+GL +GQVVK+
Sbjct: 16 VVNITKHELVPRHIPLTSDEKRNLLQRYKIKENKLPRIQDVDPVCRYFGLSKGQVVKIIR 75
Query: 163 SGEITESHVTYRCV 176
E +VTYR V
Sbjct: 76 PSETAGRYVTYRLV 89
>gi|332373332|gb|AEE61807.1| unknown [Dendroctonus ponderosae]
Length = 210
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 55/77 (71%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++LL+NIT+H L P+H V+ +EK++LL +Y ++E L R+ D +A+Y+GL+RGQVVK
Sbjct: 133 SELLINITEHELVPEHVVMNPEEKQELLARYKLKENMLMRIQAGDPVARYFGLKRGQVVK 192
Query: 160 VTYSGEITESHVTYRCV 176
+ S E +++YR V
Sbjct: 193 IIRSSETAGRYISYRLV 209
>gi|90083116|dbj|BAE90640.1| unnamed protein product [Macaca fascicularis]
Length = 210
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 52/76 (68%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E + L +Y + E QLPR+ D +A+Y+G++RGQVVK+
Sbjct: 134 ELLINITEHELVPEHVVMTKEEVTEPLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKI 193
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 194 IRPSETAGRYITYRLV 209
>gi|91087261|ref|XP_975533.1| PREDICTED: similar to AGAP010064-PA [Tribolium castaneum]
gi|270010583|gb|EFA07031.1| hypothetical protein TcasGA2_TC010003 [Tribolium castaneum]
Length = 210
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 55/77 (71%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++LL+NIT+H L P+H V+T +EK++LL +Y ++E L R+ D +A+Y+GL+RGQVVK
Sbjct: 133 SELLINITEHELVPEHVVMTPEEKQELLTRYKLKENMLMRIQAGDPVARYFGLKRGQVVK 192
Query: 160 VTYSGEITESHVTYRCV 176
+ E +++YR V
Sbjct: 193 IIRPSETAGRYISYRLV 209
>gi|391342990|ref|XP_003745798.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Metaseiulus occidentalis]
Length = 210
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 54/77 (70%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++LL+NI +H L P+H VLT +EK +LL +Y ++E L R+ D +A+YYGL+RGQVVK
Sbjct: 133 SELLINIIEHELVPEHVVLTPEEKTELLSRYKLKENHLMRIQAGDPVARYYGLKRGQVVK 192
Query: 160 VTYSGEITESHVTYRCV 176
+ + E +++YR V
Sbjct: 193 IIRNSETAGRYISYRLV 209
>gi|385301817|gb|EIF45980.1| dna-directed rna polymerases ii 24 kda polypeptide [Dekkera
bruxellensis AWRI1499]
Length = 194
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 53/75 (70%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++++VNIT H L PKH L+++EK LLK+Y ++E QLPR+ +D +A+Y GL+RGQVVK
Sbjct: 117 SEIVVNITHHELVPKHIRLSNEEKIDLLKRYRLKESQLPRIQSQDPVARYLGLKRGQVVK 176
Query: 160 VTYSGEITESHVTYR 174
+ E + +YR
Sbjct: 177 IIRRSETAGRYASYR 191
>gi|326475256|gb|EGD99265.1| DNA-directed RNA polymerase II [Trichophyton tonsurans CBS 112818]
Length = 228
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 48/65 (73%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNIT H L PKH +L+ +EK+KLL++Y ++E QLPR+ D +A+Y GL RGQVVK+
Sbjct: 160 ELLVNITHHELVPKHILLSAEEKKKLLQRYRLKESQLPRIQSGDPVAKYLGLRRGQVVKI 219
Query: 161 TYSGE 165
E
Sbjct: 220 IRKSE 224
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRISI 89
D R+ R + + RTV E+L DRGY V E+ +S+ DF+ Y PD +++RIS
Sbjct: 11 DEADREMTRLWRTWRTVFELLLDRGYEVTEEEVKISLSDFKQRYSDALGFPDRNKMRISA 70
Query: 90 SHQSDPSKRITDL 102
+R T L
Sbjct: 71 RPSQAMMERYTPL 83
>gi|119589953|gb|EAW69547.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa, isoform
CRA_a [Homo sapiens]
Length = 211
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 54/77 (70%), Gaps = 1/77 (1%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYS-IEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+LL+NIT+H L P+H V+T +E +LL +YS + E QLPR+ D +A+Y+G++RGQVVK
Sbjct: 134 ELLINITEHELVPEHVVMTKEEVTELLARYSKLRENQLPRIQAGDPVARYFGIKRGQVVK 193
Query: 160 VTYSGEITESHVTYRCV 176
+ E ++TYR V
Sbjct: 194 IIRPSETAGRYITYRLV 210
>gi|118387602|ref|XP_001026905.1| RNA polymerase Rpb5, C-terminal domain containing protein
[Tetrahymena thermophila]
gi|89308672|gb|EAS06660.1| RNA polymerase Rpb5, C-terminal domain containing protein
[Tetrahymena thermophila SB210]
Length = 275
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 48/76 (63%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DL++NITKH L PKH L EK+KL+ KY I + QLP++L D I +Y+GL QV K+
Sbjct: 199 DLVINITKHQLVPKHVPLNAIEKKKLMDKYKINDAQLPKILSTDPITKYFGLRTKQVFKI 258
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 259 ERDSETAGKYITYRIV 274
>gi|125548794|gb|EAY94616.1| hypothetical protein OsI_16393 [Oryza sativa Indica Group]
gi|125590811|gb|EAZ31161.1| hypothetical protein OsJ_15260 [Oryza sativa Japonica Group]
Length = 217
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 57/89 (64%), Gaps = 12/89 (13%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ------------LPRMLKKDAIA 147
+LLVNI H L P+H++LT ++K+ LL++Y+++E Q LPR+ D IA
Sbjct: 128 AELLVNIKDHTLVPEHELLTPEQKKTLLERYTVKETQILSLTQLVKCVNLPRIQITDPIA 187
Query: 148 QYYGLERGQVVKVTYSGEITESHVTYRCV 176
+YYG++RGQVVK+ + E +VTYR V
Sbjct: 188 RYYGMKRGQVVKIIRASETAGRYVTYRYV 216
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSD 94
R + RRTV++ML+DRGY V +I+L DF A +G D D L S H+ D
Sbjct: 9 RLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFVARFGDPVDRDHLVFS-RHKKD 61
>gi|242247587|ref|NP_001156054.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1-like
[Acyrthosiphon pisum]
gi|239793387|dbj|BAH72818.1| ACYPI000388 [Acyrthosiphon pisum]
Length = 210
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 56/77 (72%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++LL+NIT+H L P+H VLT EK++LL +Y ++E QL R+ D +++Y+GL+RGQVVK
Sbjct: 133 SELLINITEHELVPEHIVLTPDEKQELLCRYKLKENQLMRIQVGDPVSRYFGLKRGQVVK 192
Query: 160 VTYSGEITESHVTYRCV 176
+ + E +++YR V
Sbjct: 193 IVRNSETAGRYISYRLV 209
>gi|297796715|ref|XP_002866242.1| hypothetical protein ARALYDRAFT_495901 [Arabidopsis lyrata subsp.
lyrata]
gi|297312077|gb|EFH42501.1| hypothetical protein ARALYDRAFT_495901 [Arabidopsis lyrata subsp.
lyrata]
Length = 213
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 54/75 (72%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+L+ NIT+H L K+ VL DQ K++LLK Y++++ QLPR+L D +A+YYGL+RGQ+VK
Sbjct: 136 AELVTNITEHKLINKYYVLDDQAKKELLKTYTVQDTQLPRILVSDPLARYYGLKRGQIVK 195
Query: 160 VTYSGEITESHVTYR 174
+ S + + TYR
Sbjct: 196 IRRSDVTSLDYYTYR 210
>gi|326480400|gb|EGE04410.1| DNA-directed RNA polymerase I [Trichophyton equinum CBS 127.97]
Length = 276
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 47/60 (78%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNIT H L PKH +L+ +EK+KLL++Y ++E QLPR+ D +A+Y GL RGQVVK+
Sbjct: 160 ELLVNITHHELVPKHILLSAEEKKKLLQRYRLKESQLPRIQNGDPVAKYLGLRRGQVVKI 219
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRISI 89
D R+ R + + RTV E+L DRGY V E+ +S+ DF+ Y PD +++RIS
Sbjct: 11 DEADREMTRLWRTWRTVFELLLDRGYEVTEEEVKISLSDFKQRYSDALGFPDRNKMRISA 70
Query: 90 SHQSDPSKRITDL 102
+R T L
Sbjct: 71 RPSQAMMERYTPL 83
>gi|398396120|ref|XP_003851518.1| hypothetical protein MYCGRDRAFT_43980, partial [Zymoseptoria
tritici IPO323]
gi|339471398|gb|EGP86494.1| hypothetical protein MYCGRDRAFT_43980 [Zymoseptoria tritici IPO323]
Length = 218
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 50/74 (67%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNI+KH L PKH +L+ +EK LL++Y ++E QLPR+ D +A+Y GL R QVVK+
Sbjct: 142 DLLVNISKHDLVPKHILLSQEEKRGLLERYRLKETQLPRIRVDDPMARYLGLRRSQVVKI 201
Query: 161 TYSGEITESHVTYR 174
E + +YR
Sbjct: 202 IRKSETAGRYASYR 215
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPS 96
R + RT +M DRGY + +E N+S+++FR++Y + V + R ++ + PS
Sbjct: 2 RLWRVLRTTKQMCADRGYELTEAECNISLEEFRSLYADESGVPQ-RTKMAFTARPS 56
>gi|452981679|gb|EME81439.1| hypothetical protein MYCFIDRAFT_70882 [Pseudocercospora fijiensis
CIRAD86]
Length = 227
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 50/74 (67%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNI++H L PKH +L+ +EK LL++Y ++E QLPR+ D +A+Y GL R QVVK+
Sbjct: 151 DLLVNISRHELVPKHILLSQEEKRGLLERYRLKETQLPRIRIDDPMARYLGLRRAQVVKI 210
Query: 161 TYSGEITESHVTYR 174
E + +YR
Sbjct: 211 IRKSETAGRYASYR 224
Score = 36.6 bits (83), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQ 92
D SR+ R + RT +M DRGY + E N+S+++FR Y + R+ ++
Sbjct: 3 DENSRELSRLWRVLRTTKQMCSDRGYELTDEECNISLEEFRQQYADESGAPS-RVKMAFT 61
Query: 93 SDPS 96
+ PS
Sbjct: 62 ARPS 65
>gi|442755873|gb|JAA70096.1| Putative rna polymerase 25-kda subunit common to polymerases i ii
and iii [Ixodes ricinus]
Length = 210
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 54/77 (70%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++LL+NIT+H L P+H VLT +EK +LL +Y ++E L ++ D +A+Y+GL+RGQVVK
Sbjct: 133 SELLINITEHELVPEHVVLTPEEKAELLARYKLKENHLMKIQACDPVARYFGLKRGQVVK 192
Query: 160 VTYSGEITESHVTYRCV 176
+ E +++YR V
Sbjct: 193 IIRPSETAGRYISYRLV 209
>gi|19114099|ref|NP_593187.1| DNA-directed RNA polymerase I, II and III subunit Rpb5
[Schizosaccharomyces pombe 972h-]
gi|2500628|sp|Q09191.1|RPAB1_SCHPO RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=RPC24B
gi|256599719|pdb|3H0G|E Chain E, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599731|pdb|3H0G|Q Chain Q, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|1345439|dbj|BAA07843.1| RNA polymerase II 5th largest subunit [Schizosaccharomyces pombe]
gi|2465157|emb|CAB16886.1| DNA-directed RNA polymerase I, II and III subunit Rpb5
[Schizosaccharomyces pombe]
gi|2708526|gb|AAB92515.1| Rpb5 [Schizosaccharomyces pombe]
Length = 210
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 52/75 (69%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+DL+VNIT H L PKH +L+ EK++LL +Y + E QLPR+ D +A+Y GL+RG+VVK
Sbjct: 133 SDLIVNITHHELVPKHILLSPDEKKELLDRYKLRETQLPRIQLADPVARYLGLKRGEVVK 192
Query: 160 VTYSGEITESHVTYR 174
+ E + + +YR
Sbjct: 193 IVRRSETSGRYNSYR 207
>gi|342184881|emb|CCC94363.1| putative DNA-directed RNA polymerases II subunit [Trypanosoma
congolense IL3000]
Length = 219
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 80/176 (45%), Gaps = 21/176 (11%)
Query: 22 EPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY--GQD 79
E E +VD +R+ R ++ RG A+ + L ++ + Y D
Sbjct: 43 ETVEQFCEQYVDRDTREIFRSRMTLPCERVGGSQRGRAMVFFSVELGMEAMKTYYQSAMD 102
Query: 80 PDVDRLRISISHQSDPS-KRITD------------------LLVNITKHVLKPKHQVLTD 120
DR+ I + + + + KR D L+VNIT H L PKH L D
Sbjct: 103 AGCDRVIIVVHSKVNATVKRYVDYINRSNTGAKVQLFDEDSLVVNITHHELVPKHTPLED 162
Query: 121 QEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 176
+E ++L+ +S+E LPR+L D +A Y GLERG VV++ +VTYR V
Sbjct: 163 EEVREMLRAHSLEVNMLPRILSTDPVAAYLGLERGGVVRIERKSMSAGFYVTYRQV 218
>gi|289740817|gb|ADD19156.1| RNA polymerase 25-kDa subunit [Glossina morsitans morsitans]
Length = 210
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 54/77 (70%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++LL NIT+H L P+H V+T +EK++LL +Y ++E L R+ D +A+Y+GL+RGQVVK
Sbjct: 133 SELLTNITEHELVPEHVVMTPEEKQELLARYKLKENMLMRIQAGDPVARYFGLKRGQVVK 192
Query: 160 VTYSGEITESHVTYRCV 176
+ E +++YR V
Sbjct: 193 IIRLSETAGRYISYRLV 209
>gi|453084450|gb|EMF12494.1| RNA polymerase subunit [Mycosphaerella populorum SO2202]
Length = 170
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 49/74 (66%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNI+KH L PKH L+ +EK LL++Y ++E QLPR+ D +A+Y GL R QVVK+
Sbjct: 94 DLLVNISKHELVPKHIPLSQEEKRGLLERYRLKETQLPRIRVDDPMARYLGLRRSQVVKI 153
Query: 161 TYSGEITESHVTYR 174
E + +YR
Sbjct: 154 IRKSETAGRYASYR 167
>gi|407846764|gb|EKG02755.1| DNA-directed RNA polymerases II, putative [Trypanosoma cruzi]
Length = 219
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DL+VNIT H L PKH L D+E +++L+ +S+E LPR+L D +A Y GLERG+VV++
Sbjct: 143 DLVVNITHHELVPKHTQLEDEEVKEMLQAHSLELSALPRILSTDPVAAYLGLERGRVVRI 202
Query: 161 TYSGEITESHVTYRCV 176
+VTYR V
Sbjct: 203 ERKSMSAGFYVTYRQV 218
>gi|402467370|gb|EJW02677.1| hypothetical protein EDEG_02909 [Edhazardia aedis USNM 41457]
Length = 200
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL N+TKH+L PKH++L +EK KLL+ I+E QLPRML D IA+++G +RG V ++
Sbjct: 124 ELLFNVTKHMLVPKHRILEYEEKCKLLECRRIKESQLPRMLITDRIARHFGAKRGDVFEI 183
Query: 161 TYSGEITESHVTYRCV 176
S E + YR V
Sbjct: 184 VRSSETAGESLYYRIV 199
>gi|71748956|ref|XP_827817.1| DNA-directed RNA polymerases II subunit [Trypanosoma brucei
TREU927]
gi|70833201|gb|EAN78705.1| DNA-directed RNA polymerases II subunit, putative [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
Length = 219
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DL+VNIT H L PKH L D+E +++L+ +S+E LPR+L D +A Y GLERG+VV++
Sbjct: 143 DLVVNITHHELVPKHTQLEDEEVKEMLEAHSLELNMLPRILSTDPVAAYLGLERGRVVRI 202
Query: 161 TYSGEITESHVTYRCV 176
+VTYR V
Sbjct: 203 ERKSVSAGFYVTYRQV 218
>gi|90954539|emb|CAJ44464.1| RNA polymerase subunit 2RPB5 [Trypanosoma brucei brucei]
gi|261333514|emb|CBH16509.1| DNA-directed RNA polymerases II subunit,putative [Trypanosoma
brucei gambiense DAL972]
Length = 219
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DL+VNIT H L PKH L D+E +++L+ +S+E LPR+L D +A Y GLERG+VV++
Sbjct: 143 DLVVNITHHELVPKHTQLEDEEVKEMLEAHSLELNMLPRILSTDPVAAYLGLERGRVVRI 202
Query: 161 TYSGEITESHVTYRCV 176
+VTYR V
Sbjct: 203 ERKSVSAGFYVTYRQV 218
>gi|71660313|ref|XP_821874.1| DNA-directed RNA polymerases II [Trypanosoma cruzi strain CL
Brener]
gi|71664576|ref|XP_819267.1| DNA-directed RNA polymerases II [Trypanosoma cruzi strain CL
Brener]
gi|19718719|gb|AAL96367.1|AC116314_4 Tcc44h21-2.4 [Trypanosoma cruzi]
gi|70884561|gb|EAN97416.1| DNA-directed RNA polymerases II, putative [Trypanosoma cruzi]
gi|70887263|gb|EAO00023.1| DNA-directed RNA polymerases II, putative [Trypanosoma cruzi]
Length = 219
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 50/76 (65%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DL+VNIT H L PKH L D+E +++L+ +++E LPR+L D +A Y GLERG+VV++
Sbjct: 143 DLVVNITHHELVPKHTQLEDEEVKEMLQAHALELSALPRILSTDPVAAYLGLERGRVVRI 202
Query: 161 TYSGEITESHVTYRCV 176
+VTYR V
Sbjct: 203 ERKSMSAGFYVTYRQV 218
>gi|407407449|gb|EKF31248.1| DNA-directed RNA polymerases II, putative [Trypanosoma cruzi
marinkellei]
Length = 219
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 50/76 (65%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DL+VNIT H L PKH L D+E +++L+ +++E LPR+L D +A Y GLERG+VV++
Sbjct: 143 DLVVNITHHELVPKHTQLEDEEVKEMLQAHALELSTLPRILSTDPVAAYLGLERGRVVRI 202
Query: 161 TYSGEITESHVTYRCV 176
+VTYR V
Sbjct: 203 ERKSMSAGFYVTYRQV 218
>gi|146083991|ref|XP_001464893.1| putative DNA-directed RNA polymerases II [Leishmania infantum
JPCM5]
gi|398013799|ref|XP_003860091.1| DNA-directed RNA polymerases II, putative [Leishmania donovani]
gi|134068988|emb|CAM67131.1| putative DNA-directed RNA polymerases II [Leishmania infantum
JPCM5]
gi|322498310|emb|CBZ33384.1| DNA-directed RNA polymerases II, putative [Leishmania donovani]
Length = 239
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 51/76 (67%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+L VNIT H L PKH L+++E +L+ +++E QLPR+L D +A+YYGL+RGQVV++
Sbjct: 163 ELSVNITHHELVPKHSPLSEEELTDVLQAHALELNQLPRILSTDPVARYYGLKRGQVVRI 222
Query: 161 TYSGEITESHVTYRCV 176
+VTYR V
Sbjct: 223 ERKSMSAGLYVTYRQV 238
>gi|167516220|ref|XP_001742451.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779075|gb|EDQ92689.1| predicted protein [Monosiga brevicollis MX1]
Length = 210
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 53/77 (68%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+L+ N+T+H L P H++L + EK++LL++Y + E +LP++ D + +Y+G ++GQV++
Sbjct: 130 AELVYNVTRHHLVPHHEILKESEKQQLLERYCVSEDRLPQIQPNDPVCRYFGAQKGQVLR 189
Query: 160 VTYSGEITESHVTYRCV 176
+ S + +VTYR V
Sbjct: 190 IVRSSQTAGRYVTYRIV 206
>gi|401419204|ref|XP_003874092.1| putative DNA-directed RNA polymerases II [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490326|emb|CBZ25586.1| putative DNA-directed RNA polymerases II [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 239
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 51/76 (67%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+L VNIT H L PKH L+++E + +L +++E QLPR+L D +A+YYGL+RGQVV++
Sbjct: 163 ELSVNITHHELVPKHTPLSEEELKDVLHAHALELHQLPRILSTDPVARYYGLKRGQVVRI 222
Query: 161 TYSGEITESHVTYRCV 176
+VTYR V
Sbjct: 223 ERKSMSAGLYVTYRQV 238
>gi|154335545|ref|XP_001564011.1| putative DNA-directed RNA polymerases II [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134061042|emb|CAM38061.1| putative DNA-directed RNA polymerases II [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 239
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 51/76 (67%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+L VNIT H L PKH L+++E + +L +++E QLPR+L D +A+YYGL+RGQVV++
Sbjct: 163 ELSVNITHHELVPKHTPLSEEELKDVLHAHALELHQLPRILSTDPVARYYGLKRGQVVRI 222
Query: 161 TYSGEITESHVTYRCV 176
+VTYR V
Sbjct: 223 ERKSMSAGLYVTYRQV 238
>gi|326488034|dbj|BAJ89856.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 108
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 54/80 (67%), Gaps = 3/80 (3%)
Query: 28 LSGFVDNGSR---DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR 84
+S VD G R +S R +L+RRT LEML+DRGY+V SE+ ++ +FRA + Q+P+++R
Sbjct: 15 MSSMVDRGGRASQESHRLFLARRTALEMLRDRGYSVPESELARTLPEFRAWWAQEPEIER 74
Query: 85 LRISISHQSDPSKRITDLLV 104
L S SD S +++ LL+
Sbjct: 75 LSFSTFLASDHSDKVSLLLL 94
>gi|157867861|ref|XP_001682484.1| putative DNA-directed RNA polymerases II [Leishmania major strain
Friedlin]
gi|68125938|emb|CAJ03739.1| putative DNA-directed RNA polymerases II [Leishmania major strain
Friedlin]
Length = 239
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 49/76 (64%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+L VNIT H L PKH L+++E +L +++E QLPR+L D +A+YYGL RGQVV++
Sbjct: 163 ELSVNITHHELVPKHTPLSEEELRDVLHAHALELNQLPRILSTDPVARYYGLRRGQVVRI 222
Query: 161 TYSGEITESHVTYRCV 176
+VTYR V
Sbjct: 223 ERKSMSAGLYVTYRQV 238
>gi|154417816|ref|XP_001581927.1| RNA polymerase Rpb5, C-terminal domain containing protein
[Trichomonas vaginalis G3]
gi|121916159|gb|EAY20941.1| RNA polymerase Rpb5, C-terminal domain containing protein
[Trichomonas vaginalis G3]
Length = 217
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 50/78 (64%)
Query: 99 ITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVV 158
+ +L NIT H PKH+VL+++EK +L +Y I+E +LP++L D + +YYG + G ++
Sbjct: 139 LQELQYNITMHFFVPKHKVLSNEEKNELFNRYKIDETKLPQILSTDPVVRYYGADPGAII 198
Query: 159 KVTYSGEITESHVTYRCV 176
++T E VTYR V
Sbjct: 199 EITRRSETCGRVVTYRLV 216
>gi|345786834|ref|XP_854641.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 1 [Canis lupus familiaris]
Length = 210
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D A+Y+G+ QVVK+
Sbjct: 134 ELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDQKARYFGIAHPQVVKI 193
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 194 IRPSETAGRYITYRLV 209
>gi|300701817|ref|XP_002995033.1| hypothetical protein NCER_102232 [Nosema ceranae BRL01]
gi|239603668|gb|EEQ81362.1| hypothetical protein NCER_102232 [Nosema ceranae BRL01]
Length = 204
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 48/76 (63%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+L+ NITKHV P+H++L D EK +L+K I Q+P++LK+D + ++ G E GQVV++
Sbjct: 121 ELMFNITKHVSVPRHRILNDTEKNSILEKLKITVDQMPKILKRDPVCRFLGAESGQVVEI 180
Query: 161 TYSGEITESHVTYRCV 176
T + Y+ V
Sbjct: 181 TRKSRTAGESIFYKVV 196
>gi|339233930|ref|XP_003382082.1| retinol dehydrogenase 12 [Trichinella spiralis]
gi|316979012|gb|EFV61880.1| retinol dehydrogenase 12 [Trichinella spiralis]
Length = 508
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 85/152 (55%), Gaps = 17/152 (11%)
Query: 21 GEPTESCLSGFV---DNGSRDSLRYYLSRRTV-LEMLKDRGYAVALSEINLSVQDFRAIY 76
G+P S LS V ++ + + Y+ R V ++ +K+ + L N+S RAI
Sbjct: 52 GKPARSDLSFLVSHEEDAAENLFVYFADERKVGIKTIKN--VCLRLQSENMS----RAIM 105
Query: 77 -GQDPDVDRLRISISHQSDPSKRI-----TDLLVNITKHVLKPKHQVLTDQEKEKLLKKY 130
Q+P R S++ S P ++ +L+VNI +H L P+H +++ +EK++LL +Y
Sbjct: 106 IVQEPMTAIARHSVADLS-PKYKLEQFLEAELMVNIIRHELVPRHVIMSSKEKDELLDRY 164
Query: 131 SIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
I+E QLPR+ D +A+YYG+ RGQ+ ++
Sbjct: 165 KIKEHQLPRIQSTDPVARYYGVVRGQLYLFSF 196
>gi|340057896|emb|CCC52248.1| putative DNA-directed RNA polymerases II subunit [Trypanosoma vivax
Y486]
Length = 308
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 51/74 (68%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DL+VNIT H L PKH L ++E++++L+ +S+E+ LPR+L D +A Y GLERG+VV++
Sbjct: 232 DLVVNITHHELVPKHTQLEEEEEKEMLQSHSLEKSMLPRILSTDPVAAYLGLERGRVVRI 291
Query: 161 TYSGEITESHVTYR 174
+VTYR
Sbjct: 292 ERKSMSAGFYVTYR 305
>gi|83315225|ref|XP_730701.1| RNA polymerase Rpb5 [Plasmodium yoelii yoelii 17XNL]
gi|23490506|gb|EAA22266.1| RNA polymerase Rpb5, C-terminal domain, putative [Plasmodium yoelii
yoelii]
Length = 112
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 43/60 (71%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
T+LLVNITKH L PKH LT EK LL++Y I+E +LPR+ D + +Y+GL +GQV K
Sbjct: 49 TELLVNITKHELVPKHIPLTSDEKRNLLQRYKIKENKLPRIQDVDPVCRYFGLSKGQVQK 108
>gi|357482707|ref|XP_003611640.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|355512975|gb|AES94598.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 229
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 54/104 (51%), Gaps = 30/104 (28%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ----------------------- 136
+LLVN+ H L P+HQVLTD EK+ LL++Y+++E Q
Sbjct: 126 AELLVNVRYHELVPEHQVLTDNEKKTLLERYTVKETQNEVSMKDFCLFPSLLVISNPSTL 185
Query: 137 -------LPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTY 173
LPR+ +D +A YYG++RGQVVK+ E +VTY
Sbjct: 186 SPLRRHSLPRIQVRDPVAGYYGMKRGQVVKIIRPSETAGRYVTY 229
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 39/59 (66%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRI 99
+ Y R+TV+EML+DR Y V E+N+S ++F+ YG+ + + L I+ + + +PS +I
Sbjct: 10 KLYRIRKTVMEMLRDRNYLVGDFEVNMSKEEFKEKYGEHMNREDLVINKAKKDNPSDQI 68
>gi|432101146|gb|ELK29430.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Myotis
davidii]
Length = 203
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 85/197 (43%), Gaps = 58/197 (29%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----ISISHQ 92
++ R + R+T++++ DRGY V E++ ++++F+A +G P R R + ++H
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 93 SDPS---------------------------KRITDLLVNITKHVLKPKHQVLTDQEKEK 125
DP+ + IT L+ + + + Q L D +
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKY 125
Query: 126 LLKKY--------------------------SIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+L+++ + E QLPR+ D +A+Y+G++RGQVVK
Sbjct: 126 ILEQFLQQELLINITEHESALRGFFLTELPSKLRENQLPRIQAGDPVARYFGIKRGQVVK 185
Query: 160 VTYSGEITESHVTYRCV 176
+ E ++TYR V
Sbjct: 186 IIRPSETAGRYITYRLV 202
>gi|300175741|emb|CBK21284.2| unnamed protein product [Blastocystis hominis]
Length = 206
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 49/78 (62%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+ LLV+IT+H L P H L++QE ++LL++ SI +LP++ D I YYG ++GQV+K
Sbjct: 129 SSLLVDITEHFLVPPHIALSEQETKELLERLSIPADKLPKISVDDPICHYYGFKQGQVIK 188
Query: 160 VTYSGEITESHVTYRCVW 177
+ + + V +R V
Sbjct: 189 IIRNSLVGGRSVAFRVVM 206
>gi|449681257|ref|XP_002162780.2| PREDICTED: uncharacterized protein LOC100208454, partial [Hydra
magnipapillata]
Length = 383
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 45/57 (78%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQ 156
+LL+N+T+H L P+H VL+ +EK +LL +Y +++ QLPR+ + D IA+Y+GL+RGQ
Sbjct: 114 AELLINVTEHNLVPEHVVLSPEEKAELLTRYKLKDHQLPRIQQGDTIARYFGLKRGQ 170
>gi|159108363|ref|XP_001704453.1| RNA polymerase II subunit Rpb5a [Giardia lamblia ATCC 50803]
gi|21842211|gb|AAM77735.1|AF510643_1 RNA polymerase II subunit Rpb5a [Giardia intestinalis]
gi|157432516|gb|EDO76779.1| RNA polymerase II subunit Rpb5a [Giardia lamblia ATCC 50803]
Length = 229
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 48/76 (63%)
Query: 99 ITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVV 158
+T LL+NITKHVL PKH +L++ EK +LK+Y E Q+P + D +A+Y GL VV
Sbjct: 151 VTRLLINITKHVLVPKHVLLSEMEKSVVLKEYRCTEGQIPIIESSDPMARYLGLLPNDVV 210
Query: 159 KVTYSGEITESHVTYR 174
+++ E + T+R
Sbjct: 211 RISRPSETVGIYTTFR 226
>gi|308160666|gb|EFO63141.1| RNA polymerase II subunit Rpb5a [Giardia lamblia P15]
Length = 229
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 48/76 (63%)
Query: 99 ITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVV 158
+T LL+NITKHVL PKH +L++ EK +LK+Y E Q+P + D +A+Y GL VV
Sbjct: 151 VTRLLINITKHVLVPKHVLLSEMEKSVVLKEYRCTEGQIPIIESSDPMARYLGLLPNDVV 210
Query: 159 KVTYSGEITESHVTYR 174
+++ E + T+R
Sbjct: 211 RISRPSETVGIYTTFR 226
>gi|198457753|ref|XP_002138441.1| GA24393 [Drosophila pseudoobscura pseudoobscura]
gi|198136092|gb|EDY68999.1| GA24393 [Drosophila pseudoobscura pseudoobscura]
Length = 210
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 88/208 (42%), Gaps = 65/208 (31%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAI------------------ 75
N + + + R+TVL+M DRGY V E++ ++Q F+ I
Sbjct: 2 NDEEELYKMWRIRKTVLQMCHDRGYLVTQEELDQTLQGFQEIFGDRPSENCPSRADITLL 61
Query: 76 --------------YGQDPDVD-----------------RLRISISHQSDPSKRIT---- 100
+ Q+P V R I + + PS R
Sbjct: 62 VAHNDDPTDQMFVFFPQEPKVGIKDIKRYCLRMQEESIYRAIIVVQNSITPSARQALVEM 121
Query: 101 ------------DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQ 148
+L+ NIT++ P+H V+T EK++LL +Y ++E L R+ D +++
Sbjct: 122 APKYVLEQFLEAELMFNITENENVPEHVVMTPDEKQELLSRYKLKESMLMRIQVNDPVSR 181
Query: 149 YYGLERGQVVKVTYSGEITESHVTYRCV 176
Y+GL+ GQVVK+ S + +++YR V
Sbjct: 182 YFGLKPGQVVKIIRSSKSAGRYISYRIV 209
>gi|119587531|gb|EAW67127.1| hCG1640002 [Homo sapiens]
Length = 90
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 51/75 (68%)
Query: 102 LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVT 161
LL++IT++ L P++ V+T +E LL Y + E QLPR+ DA+A+Y+G++ GQVVK+
Sbjct: 15 LLIDITEYELVPEYVVMTKEEVTVLLALYKLRENQLPRIQAGDAVARYFGIKHGQVVKII 74
Query: 162 YSGEITESHVTYRCV 176
E+ ++TYR +
Sbjct: 75 RPSEMAGRYLTYRLM 89
>gi|297275632|ref|XP_001117242.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Macaca mulatta]
Length = 203
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 43/57 (75%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQV 157
+LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQV
Sbjct: 134 ELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQV 190
>gi|149034611|gb|EDL89348.1| rCG29511, isoform CRA_d [Rattus norvegicus]
Length = 242
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 43/57 (75%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQV 157
+LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQV
Sbjct: 134 ELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYFGIKRGQV 190
>gi|328853206|gb|EGG02346.1| hypothetical protein MELLADRAFT_91445 [Melampsora larici-populina
98AG31]
Length = 67
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 41/63 (65%)
Query: 113 PKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVT 172
PKH+V+ EK LL +Y + + QLPR+ D IA+YYGL+RGQVV++ E +V+
Sbjct: 3 PKHEVMKPAEKAALLARYRLHDTQLPRIQLNDPIARYYGLKRGQVVRIIRPSETAGRYVS 62
Query: 173 YRC 175
YR
Sbjct: 63 YRL 65
>gi|410949981|ref|XP_003981695.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Felis catus]
Length = 212
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 43/57 (75%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQV 157
+LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQV
Sbjct: 134 ELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQV 190
>gi|253741620|gb|EES98486.1| RNA polymerase II subunit Rpb5a [Giardia intestinalis ATCC 50581]
Length = 229
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%)
Query: 99 ITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVV 158
+T LL+NIT+HVL PKH +L++ EK +LK+Y E Q+P + D +A+Y GL VV
Sbjct: 151 VTRLLINITRHVLVPKHVLLSEMEKSVVLKEYRCTEGQIPIIESSDPMARYLGLLPNDVV 210
Query: 159 KVTYSGEITESHVTYR 174
+++ E + T+R
Sbjct: 211 RISRPSETVGIYTTFR 226
>gi|168036467|ref|XP_001770728.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677946|gb|EDQ64410.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 211
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 4/78 (5%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYS----IEEKQLPRMLKKDAIAQYYGLERGQ 156
+ LVNIT+ L P H++LT +EK LL++Y+ + LP M D +A+YYG+ GQ
Sbjct: 131 EFLVNITECYLVPLHEILTPEEKNTLLERYTEGNPVMLVLLPWMQHNDPVARYYGINPGQ 190
Query: 157 VVKVTYSGEITESHVTYR 174
VVK+ S E +VTYR
Sbjct: 191 VVKIIQSSETAGRYVTYR 208
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRI 87
R S Y R+ VLEM++D Y VA +E+ L+ + F Y +DP + L I
Sbjct: 8 RQSTHLYQVRKKVLEMMRDLDYVVADNELTLTNEQFCEKYREDPKQEDLMI 58
>gi|396081727|gb|AFN83342.1| DNA-directed RNA polymerase I [Encephalitozoon romaleae SJ-2008]
Length = 210
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%)
Query: 99 ITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVV 158
+ +++ N TKH P H++L+ +EKE +LK + LPR+LK D IA+YYG +RG V+
Sbjct: 130 VEEMVFNKTKHSWVPPHRILSREEKENVLKALKLGPGDLPRILKSDVIARYYGAKRGDVM 189
Query: 159 KVTYSGEITESHVTYRCV 176
++ + YR V
Sbjct: 190 EIVRRSRTAGESIYYRIV 207
>gi|19074518|ref|NP_586024.1| DNA-DIRECTED RNA POLYMERASE I [Encephalitozoon cuniculi GB-M1]
gi|449329590|gb|AGE95861.1| DNA-directed RNA polymerase I [Encephalitozoon cuniculi]
Length = 212
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%)
Query: 99 ITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVV 158
+ +L+ N TKH P H+VL+ +E+E + + + LPR+LK D IA+YYG ++G VV
Sbjct: 130 VEELIFNKTKHSWVPPHRVLSREERESVFRTLKLGPGDLPRILKSDVIARYYGAKQGDVV 189
Query: 159 KVTYSGEITESHVTYRCV 176
++T + + YR V
Sbjct: 190 EITRRSKTAGESIYYRVV 207
>gi|392512756|emb|CAD25628.2| DNA-DIRECTED RNA POLYMERASE I [Encephalitozoon cuniculi GB-M1]
Length = 202
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%)
Query: 99 ITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVV 158
+ +L+ N TKH P H+VL+ +E+E + + + LPR+LK D IA+YYG ++G VV
Sbjct: 120 VEELIFNKTKHSWVPPHRVLSREERESVFRTLKLGPGDLPRILKSDVIARYYGAKQGDVV 179
Query: 159 KVTYSGEITESHVTYRCV 176
++T + + YR V
Sbjct: 180 EITRRSKTAGESIYYRVV 197
>gi|378756615|gb|EHY66639.1| hypothetical protein NERG_00279 [Nematocida sp. 1 ERTm2]
Length = 208
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 49/78 (62%)
Query: 99 ITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVV 158
I +LL NITKH PKH +LTD+EK+ +LK+ + + QL ++L D + +YY +RGQV
Sbjct: 130 IKELLFNITKHKDVPKHVLLTDEEKKSVLKERKVGDAQLKKILVDDPVNRYYAGKRGQVY 189
Query: 159 KVTYSGEITESHVTYRCV 176
++ + E + YR V
Sbjct: 190 RIIRNSETAGISIEYRIV 207
>gi|195150967|ref|XP_002016421.1| GL10501 [Drosophila persimilis]
gi|194110268|gb|EDW32311.1| GL10501 [Drosophila persimilis]
Length = 210
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 50/77 (64%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+L+ NIT++ P+H V+T EK++LL +Y + E L R+ D +++Y+GL+ GQVVK
Sbjct: 133 AELMFNITENENVPEHVVMTPDEKQELLSRYKLRESMLMRIQVNDPVSRYFGLKPGQVVK 192
Query: 160 VTYSGEITESHVTYRCV 176
+ S + +++YR V
Sbjct: 193 IIRSSKTAGRYISYRIV 209
>gi|303389965|ref|XP_003073214.1| DNA-directed RNA polymerase I [Encephalitozoon intestinalis ATCC
50506]
gi|303302359|gb|ADM11854.1| DNA-directed RNA polymerase I [Encephalitozoon intestinalis ATCC
50506]
Length = 214
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%)
Query: 99 ITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVV 158
+ +++ N TKH P H++L+ +EKEK+ + LPR+LK DAIA+YYG +G VV
Sbjct: 134 VEEMIFNKTKHSWVPPHRILSREEKEKVFNTLKLGPGDLPRILKSDAIARYYGARQGDVV 193
Query: 159 KVTYSGEITESHVTYRCV 176
++ + + YR V
Sbjct: 194 EIVRKSKTAGESIYYRIV 211
>gi|357456709|ref|XP_003598635.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|355487683|gb|AES68886.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 124
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 64/102 (62%), Gaps = 6/102 (5%)
Query: 20 NGEPTES-CLSGFVDNGSR-DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG 77
NG T S CL + S +++RY+ R+T+++ML DRGY V+ S++ LS+ +FR+ +G
Sbjct: 6 NGNETRSECLVRICNEESNIETIRYFECRKTLMDMLHDRGYNVSESDLTLSLSEFRSRFG 65
Query: 78 QDPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLT 119
+ P L +S+S +S+PS ++ L N+T L+ H+ ++
Sbjct: 66 EFPKPHTLGVSVSLRSNPSIKV---LFNVTDF-LRFIHETIS 103
>gi|440494631|gb|ELQ76996.1| RNA polymerase, 25-kDa subunit (common to polymerases I, II and
III) [Trachipleistophora hominis]
Length = 197
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 50/74 (67%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL N+TKH L KH++++ +EKE+L+ + I+E+Q+PR+L D +A+Y G +G V+++
Sbjct: 121 ELLFNVTKHSLVFKHRIISVEEKERLMDEKKIKEEQMPRILITDPVAKYLGARKGDVLEI 180
Query: 161 TYSGEITESHVTYR 174
E S + +R
Sbjct: 181 ERESETAGSALYWR 194
>gi|161899423|ref|XP_001712938.1| RNA polymerase I, II and III [Bigelowiella natans]
gi|75756432|gb|ABA27326.1| RNA polymerase I, II and III [Bigelowiella natans]
Length = 204
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 48/76 (63%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
++L+N KH L PKH +L K K+LK Y++++ QLP++ D I++YYG ++G + K+
Sbjct: 128 EILINPIKHFLVPKHVLLAPDIKRKILKSYNVKDSQLPKIKLSDPISKYYGAKKGNMFKI 187
Query: 161 TYSGEITESHVTYRCV 176
E +++YR +
Sbjct: 188 IRFSENIGVYLSYRII 203
>gi|387594524|gb|EIJ89548.1| hypothetical protein NEQG_00318 [Nematocida parisii ERTm3]
gi|387596634|gb|EIJ94255.1| hypothetical protein NEPG_00922 [Nematocida parisii ERTm1]
Length = 208
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 49/78 (62%)
Query: 99 ITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVV 158
I +LL NITKH PKH +LT++EK+ +LK+ + E QL ++L D + +YY +RGQV
Sbjct: 130 IRELLFNITKHKDVPKHILLTEEEKKNVLKERKVGEAQLKKILVDDPVNRYYAGKRGQVY 189
Query: 159 KVTYSGEITESHVTYRCV 176
++ + E + YR V
Sbjct: 190 RIIRNSETAGISIEYRIV 207
>gi|195606570|gb|ACG25115.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Zea mays]
Length = 154
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 42/65 (64%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSD 94
GS +S R +L+RRT LEML DRGYAV E+ ++ +FRA P+++RL + SD
Sbjct: 6 GSVESHRLFLARRTALEMLXDRGYAVPEEELARTLPEFRAWXEYXPELERLAFXTTLTSD 65
Query: 95 PSKRI 99
PS ++
Sbjct: 66 PSSKV 70
>gi|157867863|ref|XP_001682485.1| putative DNA-directed RNA polymerase II [Leishmania major strain
Friedlin]
gi|68125939|emb|CAJ03745.1| putative DNA-directed RNA polymerase II [Leishmania major strain
Friedlin]
Length = 342
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%)
Query: 102 LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVT 161
L N+ +H P+H LT E E L + + QLPRM + D + QY GL+RG +V +T
Sbjct: 267 LAFNVVRHETVPRHVALTPAEAEAFLAERKLNVAQLPRMQESDPLVQYLGLQRGSIVHIT 326
Query: 162 YSGEITESHVTYRCV 176
G+ + + YR V
Sbjct: 327 REGKQSGPYSMYRHV 341
>gi|398013801|ref|XP_003860092.1| DNA-directed RNA polymerase II, putative [Leishmania donovani]
gi|322498311|emb|CBZ33385.1| DNA-directed RNA polymerase II, putative [Leishmania donovani]
Length = 342
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%)
Query: 102 LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVT 161
L N+ +H P+H LT E E L + + QLPRM + D + QY GL+RG +V +T
Sbjct: 267 LAFNVVRHETVPRHVALTPAEAEAFLAERKLNVAQLPRMQESDPLVQYLGLQRGSIVHIT 326
Query: 162 YSGEITESHVTYRCV 176
G+ + + YR V
Sbjct: 327 REGKQSGPYSMYRHV 341
>gi|146083994|ref|XP_001464894.1| putative DNA-directed RNA polymerase II [Leishmania infantum JPCM5]
gi|134068989|emb|CAM67132.1| putative DNA-directed RNA polymerase II [Leishmania infantum JPCM5]
Length = 342
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%)
Query: 102 LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVT 161
L N+ +H P+H LT E E L + + QLPRM + D + QY GL+RG +V +T
Sbjct: 267 LAFNVVRHETVPRHVALTPAEAEAFLAERKLNVAQLPRMQESDPLVQYLGLQRGSIVHIT 326
Query: 162 YSGEITESHVTYRCV 176
G+ + + YR V
Sbjct: 327 REGKQSGPYSMYRHV 341
>gi|261403648|ref|YP_003247872.1| DNA-directed RNA polymerase subunit H [Methanocaldococcus vulcanius
M7]
gi|261370641|gb|ACX73390.1| RNA polymerase Rpb5 [Methanocaldococcus vulcanius M7]
Length = 84
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 49/75 (65%)
Query: 102 LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVT 161
+++ +T H+L PKH+++ +E +++LKKY+I+ +QLP++ + D + Q G + G V+K+T
Sbjct: 5 IILKVTNHILVPKHEIVPKEEVDEILKKYNIKIQQLPKIYEDDPVIQEIGAKEGDVIKIT 64
Query: 162 YSGEITESHVTYRCV 176
+ + YR V
Sbjct: 65 RNSPTAGLSIAYRLV 79
>gi|169806439|ref|XP_001827964.1| DNA-directed RNA polymerase, subunit H, RpoH-RPB5 [Enterocytozoon
bieneusi H348]
gi|161779104|gb|EDQ31129.1| DNA-directed RNA polymerase, subunit H, RpoH-RPB5 [Enterocytozoon
bieneusi H348]
Length = 202
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
D+L N TKH+L P H++++ +EK LL LP +LKKD IA+Y G E V+++
Sbjct: 125 DILFNPTKHILVPHHKIMSIEEKTTLLNNLKCSLDDLPIILKKDVIAKYLGAELNDVIEI 184
Query: 161 TYSGEITESHVTYRCV 176
T + T YR V
Sbjct: 185 TRKSKTTGESKYYRVV 200
>gi|429961418|gb|ELA40963.1| hypothetical protein VICG_01993 [Vittaforma corneae ATCC 50505]
Length = 206
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 48/78 (61%)
Query: 99 ITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVV 158
+ +L NITKH L PKH+++++ E+++LL K E LP +L D + +++G + G +
Sbjct: 123 VEELQFNITKHHLVPKHRIMSESEQKELLNKLKCEMSNLPTILTTDPVCRFFGAKAGVIF 182
Query: 159 KVTYSGEITESHVTYRCV 176
++T + + + + YR V
Sbjct: 183 EITRNSQTAGTALYYRVV 200
>gi|401827017|ref|XP_003887601.1| DNA-directed RNA polymerase subunit Rpb5 [Encephalitozoon hellem
ATCC 50504]
gi|392998607|gb|AFM98620.1| DNA-directed RNA polymerase subunit Rpb5 [Encephalitozoon hellem
ATCC 50504]
Length = 200
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 99 ITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVV 158
+ +++ N TKH P H++L+ +E+E + K + LPR+L+ D IA+YYG +G VV
Sbjct: 120 VEEMMFNKTKHSWVPPHRILSREERENVFKSLKLGPGDLPRILRSDVIARYYGARQGDVV 179
Query: 159 KVTYSGEITESHVTYRCV 176
++ + YR V
Sbjct: 180 EIVRRSRTAGESIYYRIV 197
>gi|401419206|ref|XP_003874093.1| putative DNA-directed RNA polymerase II [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490327|emb|CBZ25587.1| putative DNA-directed RNA polymerase II [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 342
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%)
Query: 102 LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVT 161
L N+ +H P H LT E E L + + QLPRM + D + QY GL+RG +V +T
Sbjct: 267 LAFNVVRHETVPGHVALTPAEAEAFLAERKLNVAQLPRMQESDPLVQYLGLQRGSIVHIT 326
Query: 162 YSGEITESHVTYRCV 176
G+ + + YR V
Sbjct: 327 REGKQSGPYSMYRHV 341
>gi|225711614|gb|ACO11653.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Caligus
rogercresseyi]
Length = 210
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 57/77 (74%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++LL+N+T+H L P+H V+T +EK++LLKKY ++E QL R+ D +A+YYGL+RGQVVK
Sbjct: 133 SELLINLTEHDLVPEHVVMTPEEKKELLKKYKLKENQLMRIQAGDPVARYYGLKRGQVVK 192
Query: 160 VTYSGEITESHVTYRCV 176
+ E +++YR V
Sbjct: 193 IIRPSETAGRYISYRLV 209
>gi|225718552|gb|ACO15122.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Caligus
clemensi]
Length = 210
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 57/77 (74%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++LL+N+T+H L P+H V+T +EK++LLKKY ++E QL R+ D +A+YYGL+RGQVVK
Sbjct: 133 SELLINLTEHDLVPEHVVMTPEEKKELLKKYKLKENQLMRIQAGDPVARYYGLKRGQVVK 192
Query: 160 VTYSGEITESHVTYRCV 176
+ E +++YR V
Sbjct: 193 IIRPSETAGRYISYRLV 209
>gi|290462657|gb|ADD24376.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Lepeophtheirus salmonis]
Length = 210
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 57/77 (74%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
++LL+N+T+H L P+H V+T +EK++LLKKY ++E QL R+ D +A+YYGL+RGQVVK
Sbjct: 133 SELLINLTEHDLVPEHVVMTPEEKKELLKKYKLKENQLMRIQAGDPVARYYGLKRGQVVK 192
Query: 160 VTYSGEITESHVTYRCV 176
+ E +++YR V
Sbjct: 193 IIRPSETAGRYISYRLV 209
>gi|308158149|gb|EFO60958.1| RNA polymerase II subunit Rpb5b [Giardia lamblia P15]
Length = 201
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 99 ITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVV 158
+ LL+N TKH L PKH +L++ EK K+L + + E Q+P + D I ++Y + G ++
Sbjct: 123 FSQLLINPTKHRLVPKHTILSNTEKAKVLAELRVTEAQIPLIQASDPIMRWYDAKPGDLI 182
Query: 159 KVTYSGEITESHVTYR 174
++T + H+ YR
Sbjct: 183 RITRTSGSAGKHLYYR 198
>gi|315426561|dbj|BAJ48191.1| DNA-directed RNA polymerase subunit H [Candidatus Caldiarchaeum
subterraneum]
gi|343485293|dbj|BAJ50947.1| DNA-directed RNA polymerase subunit H [Candidatus Caldiarchaeum
subterraneum]
Length = 76
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%)
Query: 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
++IT+HVL PKH+VL+ +E E+LL++Y + +LP + D + + + G ++K+
Sbjct: 1 MDITEHVLVPKHEVLSPEEAEELLRRYGVSRDKLPYIHPSDPMVKRLKAKSGDIIKIIRR 60
Query: 164 GEITESHVTYRCVW 177
E V YR VW
Sbjct: 61 SETAGEAVYYRVVW 74
>gi|296109334|ref|YP_003616283.1| RNA polymerase Rpb5 [methanocaldococcus infernus ME]
gi|295434148|gb|ADG13319.1| RNA polymerase Rpb5 [Methanocaldococcus infernus ME]
Length = 78
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
+ +T H+L PKH++L+ +E E+LLKK I+ +QLP++ + D + Q G + G VVK+
Sbjct: 1 MKVTDHILVPKHEILSKEEVEELLKKLRIKIQQLPKIYEDDPVIQEIGAKEGDVVKIIRE 60
Query: 164 GEITESHVTYRCV 176
+ V YR V
Sbjct: 61 SPTAGTFVAYRLV 73
>gi|149627161|ref|XP_001508228.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Ornithorhynchus anatinus]
Length = 60
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 118 LTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 176
+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQVVK+ E ++TYR V
Sbjct: 1 MTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 59
>gi|253741540|gb|EES98408.1| RNA polymerase II subunit Rpb5b [Giardia intestinalis ATCC 50581]
Length = 201
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%)
Query: 99 ITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVV 158
+ L+N TKH L PKH +L+ EK ++L + + E Q+P + D I ++Y + G ++
Sbjct: 123 FSQFLINPTKHSLVPKHTILSSTEKARVLAELRVTEAQIPLIQASDPIMRWYDAKPGDLI 182
Query: 159 KVTYSGEITESHVTYR 174
+V + T H+ YR
Sbjct: 183 RVMRTSSSTGKHLYYR 198
>gi|356927751|gb|AET42541.1| hypothetical protein EXVG_00192 [Emiliania huxleyi virus 202]
Length = 213
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 83/175 (47%), Gaps = 27/175 (15%)
Query: 15 GGNGYNGEPTESCLSGFVDNGSR-DSLRYYLSR--------RTVLEMLKDRGYAVALSEI 65
G Y+ E T L+G N R DS+ Y+ + R +LE L +V L I
Sbjct: 49 GAIEYSMENTTPLLTGSFSNRCRPDSVVYFFNELKVGVKIVRDLLEKLDATPESVHL--I 106
Query: 66 NLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIT--DLLVNITKHVLKPKHQVLTDQEK 123
+SVQ + P +H+ D + +T + NITKHVL PKH + ++
Sbjct: 107 LVSVQGSTS---SRP---------AHKMDHVEFLTYKQMSFNITKHVLVPKHTYIDKEQA 154
Query: 124 EKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS--GEITESHVTYRCV 176
+ ++ ++ + + P ML DA+A + + G ++++ S G +TE VTYR V
Sbjct: 155 DVIINSFTAKPENFPMMLSTDAMAVFCHFKIGDLIRIDRSSMGGVTEGGVTYRLV 209
>gi|71664578|ref|XP_819268.1| DNA-directed RNA polymerase II [Trypanosoma cruzi strain CL Brener]
gi|70884562|gb|EAN97417.1| DNA-directed RNA polymerase II, putative [Trypanosoma cruzi]
Length = 282
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 39/60 (65%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+L NI +H P+H+VL+ +E + L++ I QLPR+LK+D + Y GL RG +VK+
Sbjct: 206 ELAYNIARHETVPQHEVLSPEEAQLFLQQRQISLSQLPRILKEDPMVAYLGLARGSIVKI 265
>gi|407846765|gb|EKG02756.1| DNA-directed RNA polymerase II, putative [Trypanosoma cruzi]
Length = 282
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 39/60 (65%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+L NI +H P+H+VL+ +E + L++ I QLPR+LK+D + Y GL RG +VK+
Sbjct: 206 ELAYNIARHDTVPQHEVLSPEEAQLFLQQRQISLSQLPRILKEDPMVAYLGLARGSIVKI 265
>gi|159118208|ref|XP_001709323.1| RNA polymerase II subunit Rpb5b [Giardia lamblia ATCC 50803]
gi|21842214|gb|AAM77736.1|AF510644_1 RNA polymerase II subunit Rpb5b [Giardia intestinalis]
gi|157437439|gb|EDO81649.1| RNA polymerase II subunit Rpb5b [Giardia lamblia ATCC 50803]
Length = 201
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 44/76 (57%)
Query: 99 ITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVV 158
+ L+N TKH L PKH +L++ EK ++L + + E Q+P + D I ++Y + G ++
Sbjct: 123 FSQFLINPTKHRLVPKHTILSNTEKARVLAELRVTEAQIPLIQTSDPIMRWYDAKPGDLI 182
Query: 159 KVTYSGEITESHVTYR 174
++T + H+ YR
Sbjct: 183 RITRTSGSAGKHLYYR 198
>gi|333911405|ref|YP_004485138.1| DNA-directed RNA polymerase subunit H [Methanotorris igneus Kol 5]
gi|333751994|gb|AEF97073.1| DNA-directed RNA polymerase subunit H [Methanotorris igneus Kol 5]
Length = 77
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%)
Query: 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
+ ++ H+L PKH+++ +E KLL+KY I+ +QLP++ D + + G + G V+K+T
Sbjct: 1 MKVSSHILVPKHEIVPKEEVPKLLQKYGIKIQQLPKIFDTDPVVKEIGAKEGDVIKITRK 60
Query: 164 GEITESHVTYRCV 176
V YR V
Sbjct: 61 SPTAGETVAYRLV 73
>gi|71660311|ref|XP_821873.1| DNA-directed RNA polymerase II [Trypanosoma cruzi strain CL Brener]
gi|19718718|gb|AAL96366.1|AC116314_3 Tcc44h21-2.3 [Trypanosoma cruzi]
gi|70887262|gb|EAO00022.1| DNA-directed RNA polymerase II, putative [Trypanosoma cruzi]
Length = 282
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+L NI +H P+H+VL+ +E L++ I QLPR+LK+D + Y GL RG +VK+
Sbjct: 206 ELAYNIARHDTVPQHEVLSPEEARLFLQQRQISLSQLPRILKEDPMVAYLGLARGSIVKI 265
Query: 161 TYSGEITESHVTYRCV 176
+ + + YR V
Sbjct: 266 HRDTKESGPYEMYRQV 281
>gi|154335547|ref|XP_001564012.1| putative DNA-directed RNA polymerase II [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134061043|emb|CAM38062.1| putative DNA-directed RNA polymerase II [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 322
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 102 LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVT 161
L N+ +H P H L+ E L + + QLPRML+ D + QY GL RG +V +T
Sbjct: 247 LAFNVVRHETVPHHVALSPTEAAMFLAERKLNVSQLPRMLESDPLVQYLGLHRGSIVHIT 306
Query: 162 YSGEITESHVTYRCV 176
G+ + + YR V
Sbjct: 307 REGKQSGPYSMYRHV 321
>gi|342184880|emb|CCC94362.1| putative DNA-directed RNA polymerase II [Trypanosoma congolense
IL3000]
Length = 292
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+L NIT+H PKH VLT E ++ L+ + + QLPR+L D I Y LERG ++++
Sbjct: 216 ELSYNITRHSSVPKHVVLTPCEAKEFLQNWKLTPTQLPRILDSDPIVGYLNLERGSIIRI 275
>gi|289193122|ref|YP_003459063.1| RNA polymerase Rpb5 [Methanocaldococcus sp. FS406-22]
gi|288939572|gb|ADC70327.1| RNA polymerase Rpb5 [Methanocaldococcus sp. FS406-22]
Length = 78
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 45/72 (62%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 164
+T H+L PKH+++ +E E++LK+Y+I+ +QLP++ + D + Q G + G V+++ +
Sbjct: 2 KVTDHILVPKHEIVPKEEVEEILKRYNIKIQQLPKIYEDDPVIQEIGAKEGDVIRIIRNS 61
Query: 165 EITESHVTYRCV 176
V YR V
Sbjct: 62 PTAGVSVAYRLV 73
>gi|327409963|ref|YP_004347383.1| DNA-directed RNA polymerase subunit RPB5 [Lausannevirus]
gi|326785137|gb|AEA07271.1| DNA-directed RNA polymerase subunit RPB5 [Lausannevirus]
Length = 198
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 49/79 (62%)
Query: 99 ITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVV 158
I+D+ H L P H+ L+++EK+K+L+ Y +++++ PR+ D I Q+YG G ++
Sbjct: 113 ISDVQFRKPSHKLVPPHRRLSEEEKQKVLEDYQVKKEKCPRISDLDPIVQWYGWSLGDLI 172
Query: 159 KVTYSGEITESHVTYRCVW 177
++ + + ++ TYR VW
Sbjct: 173 EIQRAEGVFKNTKTYRIVW 191
>gi|15669228|ref|NP_248033.1| DNA-directed RNA polymerase subunit H [Methanocaldococcus
jannaschii DSM 2661]
gi|2500629|sp|Q58443.1|RPOH_METJA RecName: Full=DNA-directed RNA polymerase subunit H
gi|4930045|pdb|1HMJ|A Chain A, Solution Structure Of Rna Polymerase Subunit H
gi|1591692|gb|AAB99042.1| DNA-directed RNA polymerase, subunit H (rpoH) [Methanocaldococcus
jannaschii DSM 2661]
Length = 78
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 164
+T H+L PKH+++ +E E++LK+Y+I+ +QLP++ + D + Q G + G VV+V
Sbjct: 2 KVTDHILVPKHEIVPKEEVEEILKRYNIKIQQLPKIYEDDPVIQEIGAKEGDVVRVIRKS 61
Query: 165 EITESHVTYRCV 176
+ YR V
Sbjct: 62 PTAGVSIAYRLV 73
>gi|256811201|ref|YP_003128570.1| DNA-directed RNA polymerase subunit H [Methanocaldococcus fervens
AG86]
gi|256794401|gb|ACV25070.1| RNA polymerase Rpb5 [Methanocaldococcus fervens AG86]
Length = 78
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 164
+T H+L PKH+++ +E E++LK+Y+I+ +QLP++ + D + Q G + G VV++
Sbjct: 2 KVTDHILVPKHEIVPKEEVEEILKRYNIKIQQLPKIYEDDPVIQEIGAKEGDVVRIIRKS 61
Query: 165 EITESHVTYRCV 176
V YR V
Sbjct: 62 PTAGVSVAYRLV 73
>gi|46668|emb|CAA32923.1| unnamed protein product [Sulfolobus acidocaldarius]
Length = 88
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%)
Query: 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
++I+ H L PKH++L +E KL+K+ I+ +QLP + D +A+ G + G ++K+T
Sbjct: 13 IDISNHELVPKHEILQLEEAYKLVKELGIKPEQLPWIRASDPVAKSIGAKPGDIIKITRK 72
Query: 164 GEITESHVTYRCV 176
T VTYR V
Sbjct: 73 SPFTGESVTYRYV 85
>gi|70606497|ref|YP_255367.1| DNA-directed RNA polymerase subunit H [Sulfolobus acidocaldarius
DSM 639]
gi|449066709|ref|YP_007433791.1| DNA-directed RNA polymerase subunit H [Sulfolobus acidocaldarius
N8]
gi|449068983|ref|YP_007436064.1| DNA-directed RNA polymerase subunit H [Sulfolobus acidocaldarius
Ron12/I]
gi|1173165|sp|P11521.2|RPOH_SULAC RecName: Full=DNA-directed RNA polymerase subunit H
gi|68567145|gb|AAY80074.1| DNA-directed RNA polymerase, subunit H [Sulfolobus acidocaldarius
DSM 639]
gi|449035217|gb|AGE70643.1| DNA-directed RNA polymerase subunit H [Sulfolobus acidocaldarius
N8]
gi|449037491|gb|AGE72916.1| DNA-directed RNA polymerase subunit H [Sulfolobus acidocaldarius
Ron12/I]
Length = 84
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%)
Query: 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
++I+ H L PKH++L +E KL+K+ I+ +QLP + D +A+ G + G ++K+T
Sbjct: 9 IDISNHELVPKHEILQLEEAYKLVKELGIKPEQLPWIRASDPVAKSIGAKPGDIIKITRK 68
Query: 164 GEITESHVTYRCV 176
T VTYR V
Sbjct: 69 SPFTGESVTYRYV 81
>gi|332157776|ref|YP_004423055.1| DNA-directed RNA polymerase subunit H [Pyrococcus sp. NA2]
gi|331033239|gb|AEC51051.1| DNA-directed RNA polymerase subunit H [Pyrococcus sp. NA2]
Length = 82
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 38/56 (67%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
NI HVL P+H+VL+++EKE LLKKY I QLP++ D + + G + G ++++
Sbjct: 8 NIFDHVLVPEHRVLSEEEKEALLKKYRITPAQLPQIKASDPVVKALGAKPGDIIEI 63
>gi|448579176|ref|ZP_21644453.1| DNA-directed RNA polymerase subunit H [Haloferax larsenii JCM
13917]
gi|448589491|ref|ZP_21649650.1| DNA-directed RNA polymerase subunit H [Haloferax elongans ATCC
BAA-1513]
gi|445723855|gb|ELZ75491.1| DNA-directed RNA polymerase subunit H [Haloferax larsenii JCM
13917]
gi|445735919|gb|ELZ87467.1| DNA-directed RNA polymerase subunit H [Haloferax elongans ATCC
BAA-1513]
Length = 75
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V++++H L P+H VL D+E E +L++Y++E+ LP++ +KD A E G V+K+
Sbjct: 1 MVDVSQHKLVPEHTVLDDEEVESVLQEYNVEKTNLPKIKRKDP-ALPDDAEPGDVIKIVR 59
Query: 163 SGEITESHVTYRCV 176
+ T+ V YR V
Sbjct: 60 NSRTTDKAVVYRLV 73
>gi|15679061|ref|NP_276178.1| DNA-directed RNA polymerase subunit H [Methanothermobacter
thermautotrophicus str. Delta H]
gi|6685896|sp|O27122.1|RPOH_METTH RecName: Full=DNA-directed RNA polymerase subunit H; AltName:
Full=RPB5
gi|9257044|pdb|1EIK|A Chain A, Solution Structure Of Rna Polymerase Subunit Rpb5 From
Methanobacterium Thermoautotrophicum
gi|2622147|gb|AAB85539.1| DNA-dependent RNA polymerase, subunit H [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 77
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 106 ITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGE 165
I KH L P+H +L + E +++LK+ +QLP++ D +A+ G +RG +VK+
Sbjct: 5 ILKHQLVPEHVILNESEAKRVLKELDAHPEQLPKIKTTDPVAKAIGAKRGDIVKIIRKSP 64
Query: 166 ITESHVTYRCV 176
E VTYR V
Sbjct: 65 TAEEFVTYRLV 75
>gi|304315183|ref|YP_003850330.1| DNA-directed RNA polymerase, subunit H [Methanothermobacter
marburgensis str. Marburg]
gi|302588642|gb|ADL59017.1| DNA-directed RNA polymerase, subunit H [Methanothermobacter
marburgensis str. Marburg]
Length = 77
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%)
Query: 106 ITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGE 165
I KH L P+H VL D E +++LK+ +QLP++ D + + G +RG +VK+
Sbjct: 5 ILKHHLVPEHVVLNDSEAKRVLKELDAHPEQLPKIKTTDPVVKAIGAKRGDIVKIIRKSP 64
Query: 166 ITESHVTYRCV 176
E +TYR V
Sbjct: 65 TAEEFITYRLV 75
>gi|320101551|ref|YP_004177143.1| DNA-directed RNA polymerase subunit H [Desulfurococcus mucosus DSM
2162]
gi|319753903|gb|ADV65661.1| DNA-directed RNA polymerase, subunit H [Desulfurococcus mucosus DSM
2162]
Length = 83
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
+N+ +H L PKH++L +E ++LKK +E QLP + D +A+ G + G +VKV
Sbjct: 5 INVLEHELVPKHEILPPEEAYQVLKKLGVEPWQLPWISINDPVAKAIGAKPGDIVKVIRK 64
Query: 164 GEITESHVTYRCV 176
+TYR V
Sbjct: 65 SPTAGEFITYRYV 77
>gi|374635615|ref|ZP_09707210.1| RNA polymerase Rpb5 [Methanotorris formicicus Mc-S-70]
gi|373561681|gb|EHP87910.1| RNA polymerase Rpb5 [Methanotorris formicicus Mc-S-70]
Length = 77
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 43/72 (59%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 164
++ H+L PKH+++ +E +LL++Y I+ +QLP++L D + + G + G V+K+T
Sbjct: 2 KVSSHILVPKHEIVPKEEVPELLRRYGIKIQQLPKILDIDPVVKEIGAKEGDVIKITRKS 61
Query: 165 EITESHVTYRCV 176
+ YR V
Sbjct: 62 STAGEVIVYRLV 73
>gi|294880824|ref|XP_002769160.1| DNA-directed RNA polymerases II 24 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239872330|gb|EER01878.1| DNA-directed RNA polymerases II 24 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 168
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 25/157 (15%)
Query: 22 EPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDR-GYAVALSEINLSVQDFRAIYGQDP 80
+P++ + F D R ++ R L+M + R A+ + + L+ AI P
Sbjct: 35 DPSDQLIVFFPDENKRVGVKPI--RTLALKMEEQRLSRAILVVQQPLTAFAKTAIQEASP 92
Query: 81 DVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRM 140
++ I + ++S+ L+VNIT H L P+H+ LT +EK LL++Y ++E QLPR+
Sbjct: 93 QME---IEVFNESE-------LVVNITHHELVPEHKPLTAEEKRLLLERYKVKENQLPRI 142
Query: 141 LKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR-CV 176
D V+K+ E +VTYR CV
Sbjct: 143 QSSDP-----------VMKIIRPSETAGRYVTYRLCV 168
>gi|15920467|ref|NP_376136.1| DNA-directed RNA polymerase subunit H [Sulfolobus tokodaii str. 7]
Length = 99
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 85 LRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKD 144
LR+S+ + S +I ++ ++H L PKH+VL+ +E K+LK+ I+ +QLP + D
Sbjct: 8 LRLSLVNIMRSSSKIK---IDPSQHELVPKHEVLSIEEAYKILKELGIKPEQLPWIRASD 64
Query: 145 AIAQYYGLERGQVVKVTYSGEITESHVTYRCV 176
IA+ G + G ++K+T ++ V YR V
Sbjct: 65 PIAKLVGAKPGDIIKITRKSSLSGEVVVYRYV 96
>gi|284504393|ref|YP_003407108.1| RNAP subunit Rpb5 [Marseillevirus]
gi|282935831|gb|ADB04146.1| RNAP subunit Rpb5 [Marseillevirus]
Length = 193
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 99 ITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVV 158
++DL V HV P H+ L++++K + L+KY +E + P++LK D + ++YG G ++
Sbjct: 112 VSDLQVITPDHVDVPPHKKLSEKKKRETLEKYGVELDKCPKILKDDPVVKWYGWSCGDLI 171
Query: 159 KVTYSGEIT-ESHVTYRCV 176
K+ GE V YR V
Sbjct: 172 KILQPGEGNFGPSVNYRVV 190
>gi|11499469|ref|NP_070710.1| DNA-directed RNA polymerase subunit H [Archaeoglobus fulgidus DSM
4304]
gi|6685900|sp|O28394.1|RPOH_ARCFU RecName: Full=DNA-directed RNA polymerase subunit H
gi|2648663|gb|AAB89370.1| DNA-directed RNA polymerase, subunit H (rpoH) [Archaeoglobus
fulgidus DSM 4304]
Length = 76
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%)
Query: 109 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 168
H+L PKH+VL+ +E E+LLK I ++QLP++ D IA+ G + G +VK+T
Sbjct: 8 HMLVPKHEVLSKEEAEELLKILGIGKEQLPKIKADDPIAKEIGAKPGDIVKITRKSLTAG 67
Query: 169 SHVTYRCV 176
V YR V
Sbjct: 68 ESVFYRLV 75
>gi|20140154|sp|Q976A3.2|RPOH_SULTO RecName: Full=DNA-directed RNA polymerase subunit H
gi|342306130|dbj|BAK54219.1| DNA-directed RNA polymerase subunit H [Sulfolobus tokodaii str. 7]
Length = 84
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 45/73 (61%)
Query: 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
++ ++H L PKH+VL+ +E K+LK+ I+ +QLP + D IA+ G + G ++K+T
Sbjct: 9 IDPSQHELVPKHEVLSIEEAYKILKELGIKPEQLPWIRASDPIAKLVGAKPGDIIKITRK 68
Query: 164 GEITESHVTYRCV 176
++ V YR V
Sbjct: 69 SSLSGEVVVYRYV 81
>gi|105923218|gb|ABF81464.1| TIR-NBS-LRR type disease resistance protein [Populus trichocarpa]
Length = 1617
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 33/44 (75%)
Query: 52 MLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDP 95
M KDRGY VA +E+ S+ +FR+I+G PD+D LR SIS +S+P
Sbjct: 1 MHKDRGYDVADTELTRSLMEFRSIFGNCPDLDSLRFSISLRSNP 44
>gi|326499964|dbj|BAJ90817.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 132
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 34/40 (85%)
Query: 98 RITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL 137
++ +LLVNI+KH LKPKH+VLT +EK KLLK Y++E+ Q+
Sbjct: 86 QVNELLVNISKHDLKPKHEVLTAEEKAKLLKLYNVEDSQV 125
>gi|146302817|ref|YP_001190133.1| DNA-directed RNA polymerase subunit H [Metallosphaera sedula DSM
5348]
gi|172046880|sp|A4YCQ7.1|RPOH_METS5 RecName: Full=DNA-directed RNA polymerase subunit H
gi|145701067|gb|ABP94209.1| DNA-directed RNA polymerase, subunit H [Metallosphaera sedula DSM
5348]
Length = 83
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%)
Query: 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
++ + HVL PKH+VL+ +E K+LK+ I +QLP M D +A+ + G +VK+T
Sbjct: 8 IDPSVHVLVPKHEVLSVEEAFKVLKELGIGPEQLPWMRASDPMARTINAKPGDIVKITRK 67
Query: 164 GEITESHVTYRCV 176
I V YR V
Sbjct: 68 SPIVGELVVYRYV 80
>gi|333986469|ref|YP_004519076.1| DNA-directed RNA polymerase subunit H [Methanobacterium sp. SWAN-1]
gi|333824613|gb|AEG17275.1| DNA-directed RNA polymerase subunit H [Methanobacterium sp. SWAN-1]
Length = 77
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 164
+I KH L P H +L+ E +K+LK+ I ++QLP++ D +A+ G + G ++++T
Sbjct: 4 DILKHKLVPDHTILSKTEAKKILKELDIHQEQLPKIKVDDPVAKAIGAKPGDILEITRKS 63
Query: 165 EITESHVTYRCVW 177
+ VTYR V
Sbjct: 64 QTAGKFVTYRLVL 76
>gi|385805647|ref|YP_005842045.1| DNA-directed RNA polymerase subunit H [Fervidicoccus fontis Kam940]
gi|383795510|gb|AFH42593.1| DNA-directed RNA polymerase subunit H [Fervidicoccus fontis Kam940]
Length = 81
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 164
++ HVL PKH+ + E K+LK+ ++ QLP + D +A+ G + G++VK+T
Sbjct: 7 SVQDHVLVPKHERIPITEVPKVLKELNVSINQLPLIRSSDPVAREIGAKPGELVKITRRD 66
Query: 165 EITESHVTYRCV 176
EIT V YR V
Sbjct: 67 EITGESVVYRLV 78
>gi|374633175|ref|ZP_09705542.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Metallosphaera
yellowstonensis MK1]
gi|373524659|gb|EHP69536.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Metallosphaera
yellowstonensis MK1]
Length = 83
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%)
Query: 98 RITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQV 157
R T V+ HVL PKH+VL +E K+LK+ + +QLP + D +A+ G + G +
Sbjct: 2 RSTSKKVDPRDHVLVPKHEVLPVEEAYKILKELGVGPEQLPWLKASDPVAKVIGAKPGDI 61
Query: 158 VKVTYSGEITESHVTYRCV 176
VK+T + V YR V
Sbjct: 62 VKITRHSPVVGELVVYRYV 80
>gi|327401235|ref|YP_004342074.1| DNA-directed RNA polymerase subunit H [Archaeoglobus veneficus
SNP6]
gi|327316743|gb|AEA47359.1| DNA-directed RNA polymerase subunit H [Archaeoglobus veneficus
SNP6]
Length = 77
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%)
Query: 109 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 168
HVL PKH+VL+ +E E+LLK ++ +QLP++ D +A+ G + G +V++
Sbjct: 9 HVLVPKHEVLSKEEAEELLKTLGVKPEQLPKIRVDDPVAKEIGAKVGDIVRIIRESPTAG 68
Query: 169 SHVTYRCV 176
V YR V
Sbjct: 69 KTVAYRLV 76
>gi|312136878|ref|YP_004004215.1| DNA-directed RNA polymerase, subunit h [Methanothermus fervidus DSM
2088]
gi|311224597|gb|ADP77453.1| DNA-directed RNA polymerase, subunit H [Methanothermus fervidus DSM
2088]
Length = 79
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 164
+I KH L PKH VL+ E +K+LK +I+ ++LP++ D + + G + G ++K+
Sbjct: 5 DILKHELVPKHVVLSKSEAKKVLKDLNIDAEKLPKIRTSDPVVKVIGAKAGDIIKIIRKS 64
Query: 165 EITESHVTYRCV 176
VTYR V
Sbjct: 65 PTAGKFVTYRLV 76
>gi|433592805|ref|YP_007282301.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Natrinema
pellirubrum DSM 15624]
gi|433307585|gb|AGB33397.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Natrinema
pellirubrum DSM 15624]
Length = 75
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V++++H L P+H VL D E E++L +Y+I+ LP++ + DA A E G V+++
Sbjct: 1 MVDVSQHELVPEHTVLEDDELEEVLTEYNIDRTDLPKIKRNDA-ALPDDAEVGDVIRIVR 59
Query: 163 SGEITESHVTYRCV 176
T+ V YR V
Sbjct: 60 DSRTTDQSVVYRLV 73
>gi|406699193|gb|EKD02404.1| DNA-directed RNA polymerases ii 24 kda polypeptide [Trichosporon
asahii var. asahii CBS 8904]
Length = 211
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISI--SHQSD 94
R+ R + +TV EM++DRGY VA EIN+S DF+ YG VDR R++ +H D
Sbjct: 7 RELARLWRVSKTVHEMIRDRGYEVADYEINMSFDDFKETYGGGGSVDRGRMAFHANHSRD 66
Query: 95 PSKRI 99
RI
Sbjct: 67 SRDRI 71
>gi|390939173|ref|YP_006402911.1| RNA polymerase Rpb5 [Desulfurococcus fermentans DSM 16532]
gi|390192280|gb|AFL67336.1| RNA polymerase Rpb5 [Desulfurococcus fermentans DSM 16532]
Length = 83
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
+NI +H L PKH+ LT +E ++LKK +E QLP + D + + G + G +V++
Sbjct: 5 INILEHELVPKHETLTPEEAYEVLKKLGVEPWQLPWISINDPVIKAIGAKPGDIVRIIRK 64
Query: 164 GEITESHVTYRCV 176
VTYR V
Sbjct: 65 SPTAGEFVTYRYV 77
>gi|14591330|ref|NP_143408.1| DNA-directed RNA polymerase subunit H [Pyrococcus horikoshii OT3]
gi|6685902|sp|O74019.1|RPOH_PYRHO RecName: Full=DNA-directed RNA polymerase subunit H
gi|3257975|dbj|BAA30658.1| 82aa long hypothetical DNA-directed RNA polymerase subunit Hprotein
[Pyrococcus horikoshii OT3]
Length = 82
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
NI KHVL P+H++L+++EK+ LL+KY I QLP++ D + G + G ++++
Sbjct: 8 NIFKHVLVPEHRILSEEEKKALLEKYKITPAQLPQIRASDPAVKALGAKPGDIIEI 63
>gi|105923251|gb|ABF81466.1| TIR-NBS type disease resistance protein [Populus trichocarpa]
Length = 1432
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 36/42 (85%)
Query: 96 SKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL 137
SK+ITDLLV+ITKHVL+PK + L ++K++L+ KY +E+KQ+
Sbjct: 11 SKQITDLLVSITKHVLQPKLERLPAEQKQQLVDKYKMEDKQM 52
>gi|389860839|ref|YP_006363079.1| DNA-directed RNA polymerase subunit H [Thermogladius cellulolyticus
1633]
gi|388525743|gb|AFK50941.1| DNA-directed RNA polymerase subunit H [Thermogladius cellulolyticus
1633]
Length = 91
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%)
Query: 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
+NI +HVL PKH+VL+ +E ++LKK + K LP + D A+ G G +++V
Sbjct: 7 INILEHVLVPKHEVLSPEEALEVLKKLGVSPKNLPWISVDDPAAKAVGARPGDIIRVVRK 66
Query: 164 GEITESHVTYRCV 176
+ YR V
Sbjct: 67 SPTAGVAIAYRYV 79
>gi|218884687|ref|YP_002429069.1| DNA-directed RNA polymerase subunit H [Desulfurococcus
kamchatkensis 1221n]
gi|218766303|gb|ACL11702.1| DNA-directed RNA polymerase subunit H [Desulfurococcus
kamchatkensis 1221n]
Length = 83
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%)
Query: 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
+NI +H L PKH+ LT +E ++LKK +E QLP + D + + G G +V++
Sbjct: 5 INILEHELVPKHETLTPEEAYEVLKKLGVEPWQLPWISINDPVIKAIGARPGDIVRIIRK 64
Query: 164 GEITESHVTYRCV 176
VTYR V
Sbjct: 65 SPTAGEFVTYRYV 77
>gi|354609470|ref|ZP_09027426.1| RNA polymerase Rpb5 [Halobacterium sp. DL1]
gi|353194290|gb|EHB59792.1| RNA polymerase Rpb5 [Halobacterium sp. DL1]
Length = 75
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V++++H L P+H VL + E E++L+ Y IE +LP++ +KD A E G V+++
Sbjct: 1 MVDVSQHELVPEHAVLDEAEVEEVLEDYEIERTELPKIRRKDP-ALPDDAEVGDVIQIVR 59
Query: 163 SGEITESHVTYRCV 176
T++ V YR V
Sbjct: 60 DSRTTDTAVVYRLV 73
>gi|14520829|ref|NP_126304.1| DNA-directed RNA polymerase subunit H [Pyrococcus abyssi GE5]
gi|13124530|sp|Q9V116.1|RPOH_PYRAB RecName: Full=DNA-directed RNA polymerase subunit H
gi|5458045|emb|CAB49535.1| rpoH DNA-directed RNA polymerase, subunit H [Pyrococcus abyssi GE5]
gi|380741371|tpe|CCE70005.1| TPA: DNA-directed RNA polymerase subunit H [Pyrococcus abyssi GE5]
Length = 82
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
NI KHVL P+H++L+++EK+ LL+KY I QLP++ D + G + G ++++
Sbjct: 8 NIFKHVLVPEHRILSEEEKKALLEKYRITPAQLPQIKASDPAVKALGAKPGDIIEI 63
>gi|336121475|ref|YP_004576250.1| DNA-directed RNA polymerase subunit H [Methanothermococcus
okinawensis IH1]
gi|334855996|gb|AEH06472.1| DNA-directed RNA polymerase subunit H [Methanothermococcus
okinawensis IH1]
Length = 78
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%)
Query: 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
+ ++ H + PKH+V+ ++ KLL+KY I+ +QLP++ D + + G + G VVK+
Sbjct: 1 MKVSSHQMVPKHEVVPKEDIPKLLEKYGIKLQQLPKIFDTDPVIEEIGAKAGDVVKIIRK 60
Query: 164 GEITESHVTYRCV 176
E + YR V
Sbjct: 61 SPTAEESIYYRLV 73
>gi|389852854|ref|YP_006355088.1| DNA-directed RNA polymerase subunit H [Pyrococcus sp. ST04]
gi|388250160|gb|AFK23013.1| DNA-directed RNA polymerase subunit H [Pyrococcus sp. ST04]
Length = 82
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 164
NI HVL P+H+VL+++EK+ LL+KY I QLP++ D + G + G ++++
Sbjct: 8 NIFDHVLVPEHRVLSEEEKKALLEKYKITPAQLPQIKASDPAVKALGAKPGDIIEIKRKS 67
Query: 165 EITESHVTYRCV 176
+ YR V
Sbjct: 68 PTAGVYYYYRIV 79
>gi|389845817|ref|YP_006348056.1| DNA-directed RNA polymerase subunit H [Haloferax mediterranei ATCC
33500]
gi|448616563|ref|ZP_21665273.1| DNA-directed RNA polymerase subunit H [Haloferax mediterranei ATCC
33500]
gi|388243123|gb|AFK18069.1| DNA-directed RNA polymerase subunit H [Haloferax mediterranei ATCC
33500]
gi|445751218|gb|EMA02655.1| DNA-directed RNA polymerase subunit H [Haloferax mediterranei ATCC
33500]
Length = 75
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V++++H L P+H +L D+ E +L++Y++E+ LP++ +KD A E G V+K+
Sbjct: 1 MVDVSQHKLVPEHTLLDDEAVEDVLQEYNVEKTNLPKIKRKDP-ALPEDAEPGDVIKIVR 59
Query: 163 SGEITESHVTYRCV 176
+ T+ V YR V
Sbjct: 60 NSRTTDKAVVYRLV 73
>gi|401882166|gb|EJT46437.1| DNA-directed RNA polymerases ii 24 kda polypeptide [Trichosporon
asahii var. asahii CBS 2479]
gi|406701349|gb|EKD04497.1| DNA-directed RNA polymerases ii 24 kda polypeptide [Trichosporon
asahii var. asahii CBS 8904]
Length = 195
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISI--SH 91
+ R+ R + +TV EM++DRGY VA EIN+S DF+ YG VDR R++ +H
Sbjct: 4 DSDRELARLWRVSKTVHEMIRDRGYEVADYEINMSFDDFKETYGGGGSVDRGRMAFHANH 63
Query: 92 QSDPSKRI 99
D RI
Sbjct: 64 SRDSRDRI 71
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSI 132
DLLVNIT+H L PKH ++ +EK L+K+Y++
Sbjct: 132 ADLLVNITRHFLVPKHTIMEPEEKSALIKRYAM 164
>gi|435852037|ref|YP_007313623.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5
[Methanomethylovorans hollandica DSM 15978]
gi|433662667|gb|AGB50093.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5
[Methanomethylovorans hollandica DSM 15978]
Length = 78
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 164
N+ + L PKH++L + E + +LK+Y IE +Q P++ D + Q G G VVK+T +
Sbjct: 5 NLLDNELIPKHEILGEDELKSVLKRYKIEREQFPKIKINDPVVQEIGASVGDVVKITRNS 64
Query: 165 EITESHVTYRCV 176
+ + YR V
Sbjct: 65 QTAGQALYYRLV 76
>gi|305663644|ref|YP_003859932.1| DNA-directed RNA polymerase subunit H [Ignisphaera aggregans DSM
17230]
gi|304378213|gb|ADM28052.1| DNA-directed RNA polymerase, subunit H [Ignisphaera aggregans DSM
17230]
Length = 86
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%)
Query: 96 SKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERG 155
S++ + + I +H L PKH+VL+ +E K+LK Y I+ +QLP + D +A+ G G
Sbjct: 3 SRKGSSVKAKILEHELVPKHEVLSLEEGLKVLKTYGIKPEQLPWLRASDPVARSIGARPG 62
Query: 156 QVVKVTYSGEITESHVTYRCV 176
+VK+ V YR V
Sbjct: 63 DIVKIVRKSPTGGEIVVYRYV 83
>gi|383320558|ref|YP_005381399.1| DNA-directed RNA polymerase subunit H [Methanocella conradii HZ254]
gi|379321928|gb|AFD00881.1| DNA-directed RNA polymerase, subunit H [Methanocella conradii
HZ254]
Length = 79
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 164
N+ +H L P H +LT++E +++LKKY I QLP++ D + + G + G V+K+
Sbjct: 6 NVLEHELVPDHILLTEEETQEVLKKYGITRGQLPKIKASDVVVKQIGAKPGDVIKIIRKS 65
Query: 165 EITESHVTYRCV 176
V YR V
Sbjct: 66 LTAGRAVAYRLV 77
>gi|297616212|ref|YP_003710351.1| DNA-directed RNA polymerase subunit H [Methanocella arvoryzae
MRE50]
Length = 79
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 164
N+ +H L P+H +L+++E ++LKKY+I + QLP++ D + + G + G V+K+
Sbjct: 6 NVLEHELVPEHILLSEEEAAEVLKKYNISKGQLPKIKTSDVVVKQIGAQPGDVIKIIRKS 65
Query: 165 EITESHVTYRCV 176
V YR V
Sbjct: 66 LTAGKAVAYRLV 77
>gi|298674730|ref|YP_003726480.1| RNA polymerase Rpb5 [Methanohalobium evestigatum Z-7303]
gi|298287718|gb|ADI73684.1| RNA polymerase Rpb5 [Methanohalobium evestigatum Z-7303]
Length = 78
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
+++ H L PKH++L E + +L Y I+++QLP++ D I Q G G VVK++
Sbjct: 4 ISLLDHELIPKHEILATDELQTVLNHYQIDKEQLPKIKSTDPIIQEIGALEGDVVKISRK 63
Query: 164 GEITESHVTYRCV 176
+ E + YR V
Sbjct: 64 SQTAEEGLYYRLV 76
>gi|408402777|ref|YP_006860760.1| DNA-directed RNA polymerase subunit H [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408363373|gb|AFU57103.1| DNA-directed RNA polymerase subunit H [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 82
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V IT H +PKH++L +E E++LKKY+ + QLP ++ D + + G ++K+T
Sbjct: 6 VVKITNHAYQPKHEILPKKEAEEILKKYNAKPSQLPYIMISDKALEDLDVRPGDIIKITR 65
Query: 163 SGEITESHVTYRCV 176
V YR V
Sbjct: 66 KSPTAGESVYYRYV 79
>gi|282163885|ref|YP_003356270.1| DNA-directed RNA polymerase subunit H [Methanocella paludicola
SANAE]
gi|282156199|dbj|BAI61287.1| DNA-directed RNA polymerase subunit H [Methanocella paludicola
SANAE]
Length = 79
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 164
++ H L P H +LT++E ++LLK+YSI QLP++ D + + G + G V+K+
Sbjct: 6 DVLTHDLVPNHILLTEEETQELLKRYSITRGQLPKIKSSDVVVKQIGAKPGDVLKIIRRS 65
Query: 165 EITESHVTYRCV 176
V YR V
Sbjct: 66 LTAGKAVAYRLV 77
>gi|448335250|ref|ZP_21524400.1| DNA-directed RNA polymerase subunit H [Natrinema pellirubrum DSM
15624]
gi|445617631|gb|ELY71225.1| DNA-directed RNA polymerase subunit H [Natrinema pellirubrum DSM
15624]
Length = 75
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V++++H L P+H VL D E E+ L +Y+I+ LP++ + DA A E G V+++
Sbjct: 1 MVDVSQHELVPEHTVLEDDELEEGLTEYNIDRTDLPKIKRNDA-ALPDDAEVGDVIRIVR 59
Query: 163 SGEITESHVTYRCV 176
T+ V YR V
Sbjct: 60 DSRTTDQSVVYRLV 73
>gi|76800709|ref|YP_325717.1| DNA-directed RNA polymerase subunit H [Natronomonas pharaonis DSM
2160]
gi|76556574|emb|CAI48145.1| DNA-directed RNA polymerase subunit H [Natronomonas pharaonis DSM
2160]
Length = 75
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V++++H + P+H VL +E E +L +Y I+ LP++ ++DA A E G VVK+
Sbjct: 1 MVDVSQHNMVPEHTVLDREEVEDVLAEYDIKRTDLPKIQRRDA-ALPDDAEPGNVVKIVR 59
Query: 163 SGEITESHVTYRCV 176
T+ V YR V
Sbjct: 60 DSRTTDEAVVYRLV 73
>gi|448383938|ref|ZP_21562936.1| DNA-directed RNA polymerase subunit H [Haloterrigena thermotolerans
DSM 11522]
gi|445658927|gb|ELZ11739.1| DNA-directed RNA polymerase subunit H [Haloterrigena thermotolerans
DSM 11522]
Length = 75
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V++++H L P+H VL D E E++L +Y+I+ LP++ + DA A G V+++
Sbjct: 1 MVDVSQHELVPEHTVLEDDELEEVLTEYNIDRTDLPKIKRNDA-ALPDDAAVGDVIRIVR 59
Query: 163 SGEITESHVTYRCV 176
T+ V YR V
Sbjct: 60 DSRTTDQSVVYRLV 73
>gi|383620456|ref|ZP_09946862.1| DNA-directed RNA polymerase subunit H [Halobiforma lacisalsi AJ5]
gi|448697817|ref|ZP_21698695.1| DNA-directed RNA polymerase subunit H [Halobiforma lacisalsi AJ5]
gi|445781183|gb|EMA32044.1| DNA-directed RNA polymerase subunit H [Halobiforma lacisalsi AJ5]
Length = 75
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V++++H L P+H VL D E E++L +Y I+ LP++ + D A E G V+K+
Sbjct: 1 MVDVSQHELVPEHTVLEDDELEEVLAEYDIDRTDLPKIKRNDP-ALPDEAEVGDVIKIVR 59
Query: 163 SGEITESHVTYRCV 176
T+ V YR V
Sbjct: 60 DSRTTDQAVVYRLV 73
>gi|399575809|ref|ZP_10769566.1| DNA-directed RNA polymerase subunit H [Halogranum salarium B-1]
gi|399238520|gb|EJN59447.1| DNA-directed RNA polymerase subunit H [Halogranum salarium B-1]
Length = 77
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEK-EKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVT 161
+V++++H L P+H VL + E+ E++L++Y++E+ LP++ +KD + E G V+++
Sbjct: 1 MVDVSQHNLVPEHTVLDEPERVEEVLEEYNVEKTNLPKIKRKDPALRDTDAEVGDVIEIV 60
Query: 162 YSGEITESHVTYRCV 176
T+ V YR V
Sbjct: 61 RDSRTTDQAVVYRLV 75
>gi|288931149|ref|YP_003435209.1| RNA polymerase Rpb5 [Ferroglobus placidus DSM 10642]
gi|288893397|gb|ADC64934.1| RNA polymerase Rpb5 [Ferroglobus placidus DSM 10642]
Length = 76
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 40/68 (58%)
Query: 109 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 168
H+L PKH++L+ +E E+LLK + ++ LP++ D IA+ G + G +V++ +
Sbjct: 8 HILVPKHELLSKEEAEELLKILGVRKEDLPKIRADDPIAKEIGAKPGDIVRIIRESKTAG 67
Query: 169 SHVTYRCV 176
+ YR V
Sbjct: 68 KSIAYRLV 75
>gi|288561074|ref|YP_003424560.1| DNA-directed RNA polymerase subunit H RpoH [Methanobrevibacter
ruminantium M1]
gi|288543784|gb|ADC47668.1| DNA-directed RNA polymerase subunit H RpoH [Methanobrevibacter
ruminantium M1]
Length = 82
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 164
+I +H PKH++LT E +K+ K + QLP++ D +++ G + G V+K+T
Sbjct: 4 DILEHNAVPKHEILTKSEIKKIFSKLDYDVSQLPKIKIDDPVSKAIGAKEGDVLKITRES 63
Query: 165 EITESHVTYRCV 176
+ + +TYR V
Sbjct: 64 QTAGTFITYRLV 75
>gi|340057895|emb|CCC52247.1| putative DNA-directed RNA polymerase II [Trypanosoma vivax Y486]
Length = 282
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+L NI++H P+H L+ +E + L+K ++ QLPR+L D + Y L RG +V++
Sbjct: 206 ELSYNISRHQTVPRHVPLSSEEAQVFLQKRHLKISQLPRILDSDPMVAYLDLSRGSIVRI 265
Query: 161 TYSGEITESHVTYRCV 176
E + YR V
Sbjct: 266 VRHTPDGEPYEMYRQV 281
>gi|232954|gb|AAB19339.1| RNA polymerase II, partial [Homo sapiens]
Length = 48
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 130 YSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 176
Y + E QLPR+ D +A+Y+G++RGQVVK+ E ++TYR V
Sbjct: 1 YKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 47
>gi|148642972|ref|YP_001273485.1| DNA-directed RNA polymerase subunit H [Methanobrevibacter smithii
ATCC 35061]
gi|261350229|ref|ZP_05975646.1| RNA polymerase Rpb5 protein [Methanobrevibacter smithii DSM 2374]
gi|148551989|gb|ABQ87117.1| DNA-dependent RNA polymerase, subunit H, RpoH [Methanobrevibacter
smithii ATCC 35061]
gi|288861015|gb|EFC93313.1| RNA polymerase Rpb5 protein [Methanobrevibacter smithii DSM 2374]
Length = 77
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%)
Query: 102 LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVT 161
+ +NI +H+L PKH+++TD E E L + + LPR+ D + + + ++++T
Sbjct: 1 MTINIQEHMLVPKHEIMTDSEIEDLKNSADYDIENLPRIKVDDPVVKDIDAKENDILRIT 60
Query: 162 YSGEITESHVTYRCV 176
+ + VTYR V
Sbjct: 61 RESDTAGTFVTYRIV 75
>gi|448611017|ref|ZP_21661651.1| DNA-directed RNA polymerase subunit H [Haloferax mucosum ATCC
BAA-1512]
gi|445743449|gb|ELZ94930.1| DNA-directed RNA polymerase subunit H [Haloferax mucosum ATCC
BAA-1512]
Length = 75
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V++++H L P+H +L D+ E +L++Y++++ LP++ +KD A E G V+K+
Sbjct: 1 MVDVSQHKLVPEHTLLDDEAVEDVLQEYNVKKTNLPKIKRKDP-ALPEDAEPGDVIKIVR 59
Query: 163 SGEITESHVTYRCV 176
+ T+ V YR V
Sbjct: 60 NSRTTDKAVVYRLV 73
>gi|448303814|ref|ZP_21493760.1| DNA-directed RNA polymerase subunit H [Natronorubrum sulfidifaciens
JCM 14089]
gi|445592441|gb|ELY46628.1| DNA-directed RNA polymerase subunit H [Natronorubrum sulfidifaciens
JCM 14089]
Length = 75
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V++++H L P+H VL D E +L +Y I+ LP++ + DA A E G VVK+
Sbjct: 1 MVDVSQHELVPEHTVLEDDVLEGVLSEYDIDRTDLPKIKRTDA-ALPDDAEAGDVVKIVR 59
Query: 163 SGEITESHVTYRCV 176
+ T+ + YR V
Sbjct: 60 NSRTTDQAIIYRLV 73
>gi|242398378|ref|YP_002993802.1| DNA-directed RNA polymerase subunit H [Thermococcus sibiricus MM
739]
gi|259494220|sp|C6A1F8.1|RPOH_THESM RecName: Full=DNA-directed RNA polymerase subunit H
gi|242264771|gb|ACS89453.1| DNA-directed RNA polymerase subunit H [Thermococcus sibiricus MM
739]
Length = 82
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
+ I HVL P+H+VL+ +E E+LLKKY+I+ QLP++ D Q + G ++++
Sbjct: 7 LTIFDHVLVPEHRVLSKEETEELLKKYNIKPSQLPQIKTSDPAVQALDAKPGDIIEIKRK 66
Query: 164 GEITESHVTYRCV 176
+ YR V
Sbjct: 67 SPTAGVYYYYRIV 79
>gi|297619555|ref|YP_003707660.1| RNA polymerase Rpb5 [Methanococcus voltae A3]
gi|297378532|gb|ADI36687.1| RNA polymerase Rpb5 [Methanococcus voltae A3]
Length = 78
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%)
Query: 109 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 168
H + P H+++ +E LLK+Y+I+ +QLP++L D + G + G VVK+T E
Sbjct: 6 HNMVPMHEIIDKEEIPLLLKQYNIKIQQLPKLLDIDPVVIEIGAKEGDVVKITRPSETAG 65
Query: 169 SHVTYRCV 176
+ YR V
Sbjct: 66 ETIYYRLV 73
>gi|71748954|ref|XP_827816.1| DNA-directed RNA polymerase II [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70833200|gb|EAN78704.1| DNA-directed RNA polymerase II, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|84619250|emb|CAJ43705.1| RNA polymerase I subunit 1RPB5 [Trypanosoma brucei brucei]
gi|261333513|emb|CBH16508.1| DNA-directed RNA polymerase II, putative [Trypanosoma brucei
gambiense DAL972]
Length = 299
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+L NI++H PKH +TD E L++ + QLPR+L D + +Y L RG ++++
Sbjct: 223 ELAYNISRHQSVPKHVPMTDVEVRAFLEQRKLMITQLPRILNDDPMVEYLDLPRGSIIRI 282
Query: 161 TYSGEITESHVTYRCV 176
+ ++ YR V
Sbjct: 283 ERRTDEGSTYEMYRHV 298
>gi|219852747|ref|YP_002467179.1| DNA-directed RNA polymerase subunit H [Methanosphaerula palustris
E1-9c]
gi|219547006|gb|ACL17456.1| RNA polymerase Rpb5 [Methanosphaerula palustris E1-9c]
Length = 83
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 42/73 (57%)
Query: 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
+N+ H++ P HQ+++++E + LL +Y I QLPR+ D + G + G+VVK+
Sbjct: 5 INVLDHLMVPDHQIMSEEEVKALLSRYKITYDQLPRVYHDDPAVKQIGGKVGEVVKIVRI 64
Query: 164 GEITESHVTYRCV 176
+ + +YR +
Sbjct: 65 SQTAGTAESYRLI 77
>gi|413952168|gb|AFW84817.1| hypothetical protein ZEAMMB73_052663 [Zea mays]
Length = 238
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 34/40 (85%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPR 139
++L+NI +HVL P+HQVLT++EK+ LL++Y+++E Q+ R
Sbjct: 133 AEMLINIKEHVLVPEHQVLTNEEKKTLLERYTLKETQVLR 172
>gi|150401221|ref|YP_001324987.1| DNA-directed RNA polymerase subunit H [Methanococcus aeolicus
Nankai-3]
gi|166229324|sp|A6UV53.1|RPOH_META3 RecName: Full=DNA-directed RNA polymerase subunit H
gi|150013924|gb|ABR56375.1| RNA polymerase Rpb5 [Methanococcus aeolicus Nankai-3]
Length = 78
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 113 PKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVT 172
PKH+V++ +E +KLL KY I+ +QLP++ D + + G + G VVK++ T H T
Sbjct: 10 PKHEVISKEEVQKLLAKYDIKIQQLPKIFDIDPVIEEIGAKPGDVVKISRDSP-TSGHAT 68
Query: 173 Y 173
Y
Sbjct: 69 Y 69
>gi|325960118|ref|YP_004291584.1| DNA-directed RNA polymerase subunit H [Methanobacterium sp. AL-21]
gi|325331550|gb|ADZ10612.1| DNA-directed RNA polymerase subunit H [Methanobacterium sp. AL-21]
Length = 77
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 164
+I KH L P H +L+D E +K++K + +QLP++ D +A+ + G ++++T
Sbjct: 4 DILKHKLVPDHTILSDTEAKKVVKNLKVHPEQLPKIKADDPVAKAIEAKPGDILQITRKS 63
Query: 165 EITESHVTYRCVW 177
VTYR V
Sbjct: 64 HTAGKFVTYRLVL 76
>gi|380474201|emb|CCF45905.1| RNA polymerase Rpb5, partial [Colletotrichum higginsianum]
Length = 219
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 38/61 (62%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
DLLVNIT+H L PKH +L+ +EK LLK+Y ++E QL +L+ L G+ ++
Sbjct: 154 DLLVNITQHELVPKHILLSREEKVALLKRYRLKETQLXXILQXAPSXSTSVLSAGRXSRI 213
Query: 161 T 161
+
Sbjct: 214 S 214
>gi|84490163|ref|YP_448395.1| DNA-directed RNA polymerase subunit H [Methanosphaera stadtmanae
DSM 3091]
gi|121729277|sp|Q2NEK1.1|RPOH_METST RecName: Full=DNA-directed RNA polymerase subunit H
gi|84373482|gb|ABC57752.1| RpoH [Methanosphaera stadtmanae DSM 3091]
Length = 77
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 41/72 (56%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 164
+I +H L P+H +L+++E +K+L ++ Q+P++L D + + + G ++K+T
Sbjct: 4 DILQHKLVPEHTILSEEEAQKVLDDLNVRLDQIPKILPTDPVVKAIDAKVGDILKITRKS 63
Query: 165 EITESHVTYRCV 176
E V YR V
Sbjct: 64 ETAGIFVAYRVV 75
>gi|257051870|ref|YP_003129703.1| DNA-directed RNA polymerase subunit H [Halorhabdus utahensis DSM
12940]
gi|256690633|gb|ACV10970.1| RNA polymerase Rpb5 [Halorhabdus utahensis DSM 12940]
Length = 75
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V++++H L P+H +L D E E++L +Y I+ LP++ + D A E G V+K+
Sbjct: 1 MVDVSQHELVPEHTILDDGELEEVLGEYDIKRTDLPKIKRADP-ALPDEAEVGDVIKIAR 59
Query: 163 SGEITESHVTYRCV 176
T++ V YR V
Sbjct: 60 DSRTTDTAVVYRLV 73
>gi|410670211|ref|YP_006922582.1| DNA-directed RNA polymerase, subunit H [Methanolobus psychrophilus
R15]
gi|409169339|gb|AFV23214.1| DNA-directed RNA polymerase, subunit H [Methanolobus psychrophilus
R15]
Length = 80
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 43/68 (63%)
Query: 109 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 168
H L PKH++++++E + +LK Y+I ++QLP++ +D + + G + G+VVK+T +
Sbjct: 11 HELIPKHEIMSEEELKLVLKHYNIGKEQLPKIKVEDPVIKEIGAQAGEVVKITRKSQTAG 70
Query: 169 SHVTYRCV 176
YR V
Sbjct: 71 EAFYYRLV 78
>gi|395646421|ref|ZP_10434281.1| RNA polymerase Rpb5 [Methanofollis liminatans DSM 4140]
gi|395443161|gb|EJG07918.1| RNA polymerase Rpb5 [Methanofollis liminatans DSM 4140]
Length = 83
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 164
N+ HV+ P HQ ++++E LL +Y I QLPR+ D + G + G V+K+T +
Sbjct: 6 NVLDHVMVPDHQKMSEEEVGDLLSRYQITLDQLPRIYSDDPAVKSIGAKIGDVIKITRNS 65
Query: 165 EITESHVTYRCV 176
+ +YR V
Sbjct: 66 QTAGIAESYRHV 77
>gi|322511117|gb|ADX06430.1| putative DNA-directed RNA polymerase II [Organic Lake phycodnavirus
2]
Length = 198
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 85 LRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIE-EKQLPRMLKK 143
LR SH +I +L N+ +H PKH L+ EK++L KY+IE +KQLP++ +
Sbjct: 104 LRTRWSHLYINVFKINELQYNLLEHSFVPKHVKLSFLEKKELYLKYNIENDKQLPQISRF 163
Query: 144 DAIAQYYGLERGQVVKVTYSGEITESHVTYR-CV 176
D +A+ L G+V K+ +I+ + YR CV
Sbjct: 164 DPVAKAILLRPGEVCKIIRYDKISLQNDYYRICV 197
>gi|45358923|ref|NP_988480.1| DNA-directed RNA polymerase subunit H [Methanococcus maripaludis
S2]
gi|340624670|ref|YP_004743123.1| DNA-directed RNA polymerase subunit H [Methanococcus maripaludis
X1]
gi|47605973|sp|P61519.1|RPOH_METMP RecName: Full=DNA-directed RNA polymerase subunit H
gi|45047789|emb|CAF30916.1| RNA polymerase H/23 kD subunit [Methanococcus maripaludis S2]
gi|339904938|gb|AEK20380.1| DNA-directed RNA polymerase subunit H [Methanococcus maripaludis
X1]
Length = 78
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%)
Query: 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
+ I+ H + P H+++ +E LL+KYSI+ +Q P++L D + G G VVK+T
Sbjct: 1 MKISSHEMVPTHEIIPREEIPLLLEKYSIKMQQFPKLLDTDPLVLEIGATPGDVVKITRM 60
Query: 164 GEITESHVTYRCV 176
YR V
Sbjct: 61 SPTAGESTYYRLV 73
>gi|448411896|ref|ZP_21576252.1| DNA-directed RNA polymerase subunit H [Halosimplex carlsbadense
2-9-1]
gi|445669830|gb|ELZ22438.1| DNA-directed RNA polymerase subunit H [Halosimplex carlsbadense
2-9-1]
Length = 78
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQ--YYGLERGQVVKV 160
+V++++H L P H VL E E +L++Y+I++ LP++ + D + +E G VV+V
Sbjct: 1 MVDVSQHELVPDHTVLDSDEIEGVLEEYNIKKTDLPKIKRTDPAMRDLEADVETGDVVQV 60
Query: 161 TYSGEITESHVTYRCV 176
T T+ V YR V
Sbjct: 61 TRDSRTTDRAVVYRLV 76
>gi|432330440|ref|YP_007248583.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Methanoregula
formicicum SMSP]
gi|432137149|gb|AGB02076.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Methanoregula
formicicum SMSP]
Length = 83
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%)
Query: 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
+N+ +HV+ P HQ++++ E +LL +Y+I +QLP++ D + G E V+++ +
Sbjct: 5 LNVLEHVMVPDHQIMSEDEVSELLTRYNITTEQLPKIYHDDPAVKTIGAEADDVIRIIRT 64
Query: 164 GEITESHVTYRCV 176
YR V
Sbjct: 65 SHTAGRAEAYRLV 77
>gi|292654524|ref|YP_003534421.1| DNA-directed RNA polymerase subunit H [Haloferax volcanii DS2]
gi|433436035|ref|ZP_20408169.1| DNA-directed RNA polymerase subunit H [Haloferax sp. BAB2207]
gi|448293473|ref|ZP_21483579.1| DNA-directed RNA polymerase subunit H [Haloferax volcanii DS2]
gi|448543662|ref|ZP_21625216.1| DNA-directed RNA polymerase subunit H [Haloferax sp. ATCC BAA-646]
gi|448550754|ref|ZP_21629057.1| DNA-directed RNA polymerase subunit H [Haloferax sp. ATCC BAA-645]
gi|448558945|ref|ZP_21633266.1| DNA-directed RNA polymerase subunit H [Haloferax sp. ATCC BAA-644]
gi|448560709|ref|ZP_21634157.1| DNA-directed RNA polymerase subunit H [Haloferax prahovense DSM
18310]
gi|448573319|ref|ZP_21640903.1| DNA-directed RNA polymerase subunit H [Haloferax lucentense DSM
14919]
gi|448582590|ref|ZP_21646094.1| DNA-directed RNA polymerase subunit H [Haloferax gibbonsii ATCC
33959]
gi|448597573|ref|ZP_21654498.1| DNA-directed RNA polymerase subunit H [Haloferax alexandrinus JCM
10717]
gi|448605733|ref|ZP_21658359.1| DNA-directed RNA polymerase subunit H [Haloferax sulfurifontis ATCC
BAA-897]
gi|448622532|ref|ZP_21669226.1| DNA-directed RNA polymerase subunit H [Haloferax denitrificans ATCC
35960]
gi|291372257|gb|ADE04484.1| DNA-directed RNA polymerase subunit H [Haloferax volcanii DS2]
gi|432191860|gb|ELK48782.1| DNA-directed RNA polymerase subunit H [Haloferax sp. BAB2207]
gi|445570527|gb|ELY25087.1| DNA-directed RNA polymerase subunit H [Haloferax volcanii DS2]
gi|445706385|gb|ELZ58268.1| DNA-directed RNA polymerase subunit H [Haloferax sp. ATCC BAA-646]
gi|445711259|gb|ELZ63053.1| DNA-directed RNA polymerase subunit H [Haloferax sp. ATCC BAA-645]
gi|445711786|gb|ELZ63574.1| DNA-directed RNA polymerase subunit H [Haloferax sp. ATCC BAA-644]
gi|445719084|gb|ELZ70767.1| DNA-directed RNA polymerase subunit H [Haloferax lucentense DSM
14919]
gi|445722359|gb|ELZ74022.1| DNA-directed RNA polymerase subunit H [Haloferax prahovense DSM
18310]
gi|445732238|gb|ELZ83821.1| DNA-directed RNA polymerase subunit H [Haloferax gibbonsii ATCC
33959]
gi|445739034|gb|ELZ90543.1| DNA-directed RNA polymerase subunit H [Haloferax alexandrinus JCM
10717]
gi|445741759|gb|ELZ93258.1| DNA-directed RNA polymerase subunit H [Haloferax sulfurifontis ATCC
BAA-897]
gi|445754614|gb|EMA06019.1| DNA-directed RNA polymerase subunit H [Haloferax denitrificans ATCC
35960]
Length = 75
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V++++H L P+H L D+ E +L++Y++E+ LP++ KD A E G V+K+
Sbjct: 1 MVDVSQHKLVPEHTKLDDEAVEDVLQEYNVEKTNLPKIKLKDP-ALPEDAEPGDVIKIVR 59
Query: 163 SGEITESHVTYRCV 176
+ T+ V YR V
Sbjct: 60 NSRTTDKAVVYRLV 73
>gi|332796433|ref|YP_004457933.1| RNA polymerase subunit H [Acidianus hospitalis W1]
gi|332694168|gb|AEE93635.1| archaeal RNA polymerase subunit H [Acidianus hospitalis W1]
Length = 84
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 109 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 168
H L PKH+VL+ +E K+LK + +QLP + D + + G + G ++K+T +
Sbjct: 14 HSLVPKHEVLSIEEAYKVLKALGVSPEQLPWIKASDPVVKAIGAKPGDIIKITRKSQTVG 73
Query: 169 SHVTYRCV 176
V YR V
Sbjct: 74 ETVIYRYV 81
>gi|110669271|ref|YP_659082.1| DNA-directed RNA polymerase subunit H [Haloquadratum walsbyi DSM
16790]
gi|385804835|ref|YP_005841235.1| DNA-directed RNA polymerase subunit H [Haloquadratum walsbyi C23]
gi|109627018|emb|CAJ53494.1| DNA-directed RNA polymerase subunit H [Haloquadratum walsbyi DSM
16790]
gi|339730327|emb|CCC41656.1| DNA-directed RNA polymerase subunit H [Haloquadratum walsbyi C23]
Length = 75
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V++ +H L P+H ++ + + E +L +Y I LP++ ++D A E G VVK+
Sbjct: 1 MVDVNQHTLVPEHTLVDEDDIEAILTEYDIRRADLPKIQRRDP-ALPDNAEPGDVVKIVR 59
Query: 163 SGEITESHVTYRCV 176
T+ V+YR V
Sbjct: 60 DSRTTDRAVSYRLV 73
>gi|66543279|ref|XP_623541.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Apis mellifera]
Length = 179
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 34/47 (72%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAI 146
++LL+NIT+H L P+H VLT EKE+LL +Y ++E QL R+ D +
Sbjct: 133 SELLINITEHELVPEHIVLTPDEKEELLTRYKLKENQLMRIQAGDPV 179
Score = 39.3 bits (90), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ + + R+TV+++ DRGY V E++ +++ F+ +G P R L + ++H
Sbjct: 6 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHN 65
Query: 93 SDPSKRI 99
DP+ ++
Sbjct: 66 DDPTDQL 72
>gi|297723261|ref|NP_001173994.1| Os04g0487300 [Oryza sativa Japonica Group]
gi|255675576|dbj|BAH92722.1| Os04g0487300 [Oryza sativa Japonica Group]
Length = 43
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 29/41 (70%)
Query: 136 QLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 176
QLPR+ D IA+YYG++RGQVVK+ + E +VTYR V
Sbjct: 2 QLPRIQITDPIARYYGMKRGQVVKIIRASETAGRYVTYRYV 42
>gi|448482814|ref|ZP_21605585.1| DNA-directed RNA polymerase subunit H [Halorubrum arcis JCM 13916]
gi|445821100|gb|EMA70896.1| DNA-directed RNA polymerase subunit H [Halorubrum arcis JCM 13916]
Length = 75
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V++++H L P H +L D E E++L +Y +++ LP++ + D A E G VVK+
Sbjct: 1 MVDVSQHELVPDHVLLDDDEIEEVLAEYDVKKTNLPKIKRTDP-ALPDEAEVGDVVKIVR 59
Query: 163 SGEITESHVTYRCV 176
T+ V YR V
Sbjct: 60 DSRTTDEAVVYRLV 73
>gi|330833899|ref|YP_004408627.1| DNA-directed RNA polymerase subunit H [Metallosphaera cuprina Ar-4]
gi|329566038|gb|AEB94143.1| DNA-directed RNA polymerase subunit H [Metallosphaera cuprina Ar-4]
Length = 83
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%)
Query: 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
++ +H L PKH+VL +E +LK+ + +QLP M D +A+ + G +VK+T
Sbjct: 8 IDPREHTLVPKHEVLPIEEAYNVLKELGVGPEQLPWMKASDPMAKAINAKPGDIVKITRK 67
Query: 164 GEITESHVTYRCV 176
+ V YR V
Sbjct: 68 SPVVGELVIYRYV 80
>gi|448312203|ref|ZP_21501953.1| DNA-directed RNA polymerase subunit H [Natronolimnobius
innermongolicus JCM 12255]
gi|445602710|gb|ELY56682.1| DNA-directed RNA polymerase subunit H [Natronolimnobius
innermongolicus JCM 12255]
Length = 75
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V++++H L P H VL + E++L++Y I+ LP++ + D+ A E G V+K+
Sbjct: 1 MVDVSQHELVPDHSVLDEDTLEEVLEEYDIDRTDLPKIKRNDS-ALPDEAEIGDVIKIVR 59
Query: 163 SGEITESHVTYRCV 176
+ T+ V YR V
Sbjct: 60 NSRTTDQAVVYRLV 73
>gi|312183597|gb|ADQ42368.1| DNA-directed RNA polymerase subunit H [Methanosaeta harundinacea
6Ac]
Length = 98
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 109 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 168
H L P+H +LT +E E++ + Y ++ QLP++ D + + G + G VVK+ + +
Sbjct: 29 HDLVPEHILLTPEEAEEVFRAYGVDSAQLPKIHATDPVVKEIGGKVGDVVKIKRNSPTSG 88
Query: 169 SHVTYRCV 176
V YR V
Sbjct: 89 ESVFYRLV 96
>gi|18977937|ref|NP_579294.1| DNA-directed RNA polymerase subunit H [Pyrococcus furiosus DSM
3638]
gi|397652058|ref|YP_006492639.1| DNA-directed RNA polymerase subunit H [Pyrococcus furiosus COM1]
gi|22096124|sp|Q8U0M2.1|RPOH_PYRFU RecName: Full=DNA-directed RNA polymerase subunit H
gi|18893707|gb|AAL81689.1| DNA-directed RNA polymerase subunit h [Pyrococcus furiosus DSM
3638]
gi|393189649|gb|AFN04347.1| DNA-directed RNA polymerase subunit H [Pyrococcus furiosus COM1]
Length = 82
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 37/56 (66%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+I HVL P+H+VL+++EK+ LL+KY I QLP++ D + G + G V+++
Sbjct: 8 SIFDHVLVPEHRVLSEEEKKALLEKYKITLAQLPQIKASDPAVKALGAKPGDVIEI 63
>gi|297527626|ref|YP_003669650.1| RNA polymerase Rpb5 [Staphylothermus hellenicus DSM 12710]
gi|297256542|gb|ADI32751.1| RNA polymerase Rpb5 [Staphylothermus hellenicus DSM 12710]
Length = 90
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 164
NI +H L PKH+VL+ +E +LL+K I+ QLP + D + + G + G ++++
Sbjct: 7 NILEHELVPKHEVLSVREAAELLRKLKIKPAQLPWISIDDPVVKAIGAKPGDIIRIIRKS 66
Query: 165 EITESHVTYRCV 176
+ YR V
Sbjct: 67 STAGETIAYRYV 78
>gi|335438705|ref|ZP_08561441.1| DNA-directed RNA polymerase subunit H [Halorhabdus tiamatea SARL4B]
gi|334890827|gb|EGM29087.1| DNA-directed RNA polymerase subunit H [Halorhabdus tiamatea SARL4B]
Length = 75
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V++++H L P+H VL D++ E +L +Y I+ LP++ + D A E G V+++
Sbjct: 1 MVDVSQHELVPEHTVLDDEKLEDVLGEYDIKRTDLPKIKRADP-ALPDEAEVGDVIEIAR 59
Query: 163 SGEITESHVTYRCV 176
T++ V YR V
Sbjct: 60 DSRTTDTAVVYRLV 73
>gi|302348972|ref|YP_003816610.1| DNA-directed RNA polymerase subunit H [Acidilobus saccharovorans
345-15]
gi|302329384|gb|ADL19579.1| DNA-directed RNA polymerase subunit H [Acidilobus saccharovorans
345-15]
Length = 68
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 113 PKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVT 172
PKH++L+ +E ++L K ++ QLPR+ D I + G + G +V++ + HV
Sbjct: 2 PKHRILSIEEAVEVLNKLGVKPWQLPRISANDPIIKLLGGKPGDIVEIERNSPTAGKHVV 61
Query: 173 YRCV 176
YR V
Sbjct: 62 YRVV 65
>gi|294495207|ref|YP_003541700.1| DNA-directed RNA polymerase, subunit H [Methanohalophilus mahii DSM
5219]
gi|292666206|gb|ADE36055.1| DNA-directed RNA polymerase, subunit H [Methanohalophilus mahii DSM
5219]
Length = 78
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 40/68 (58%)
Query: 109 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 168
H P+H+++ + E + +LKKY+I +QLP++ +D + + G E G +VK+T +
Sbjct: 9 HEFIPRHEIIDEDEIKSVLKKYNIGREQLPKIKIEDPVIKEIGAEVGDIVKITRKSQTAG 68
Query: 169 SHVTYRCV 176
+ YR V
Sbjct: 69 EALYYRYV 76
>gi|347482170|gb|AEO98111.1| hypothetical protein ELVG_00363 [Emiliania huxleyi virus 203]
gi|347601164|gb|AEP15650.1| hypothetical protein EQVG_00241 [Emiliania huxleyi virus 207]
gi|347601632|gb|AEP16117.1| hypothetical protein ERVG_00241 [Emiliania huxleyi virus 208]
gi|357972721|gb|AET97994.1| hypothetical protein EPVG_00106 [Emiliania huxleyi virus 201]
Length = 214
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS- 163
NITKHVL H + ++ + ++ ++ + + P ML D +A + + G ++++ S
Sbjct: 136 NITKHVLVKPHTYIDKEQADVIINSFAAKPEHFPMMLSTDPMAVFCHYKIGDLIEIDRSS 195
Query: 164 -GEITESHVTYRCV 176
G +TE +TYR V
Sbjct: 196 LGGVTEGGITYRLV 209
>gi|407464205|ref|YP_006775087.1| RNA polymerase Rpb5 [Candidatus Nitrosopumilus sp. AR2]
gi|407047393|gb|AFS82145.1| RNA polymerase Rpb5 [Candidatus Nitrosopumilus sp. AR2]
Length = 83
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%)
Query: 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
V + HV PKH++++ QE E++LKKY+ + +LP + D G++ G ++K+T
Sbjct: 8 VLVPDHVYVPKHEIISKQEAEEVLKKYNCKPTELPLIFVNDPAILGLGVKPGDMIKITRK 67
Query: 164 GEITESHVTYRCV 176
+ YR V
Sbjct: 68 SPTAGESLYYRYV 80
>gi|322370002|ref|ZP_08044564.1| DNA-directed RNA polymerase subunit H [Haladaptatus paucihalophilus
DX253]
gi|320550338|gb|EFW91990.1| DNA-directed RNA polymerase subunit H [Haladaptatus paucihalophilus
DX253]
Length = 75
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V++++H + P+H ++ E +++L +Y I+ LP++ + D A E G V+K+
Sbjct: 1 MVDVSQHKMVPEHSIVDSDEIDEVLAEYDIKSTDLPKIKRTDP-ALPDDAEPGDVIKIVR 59
Query: 163 SGEITESHVTYRCV 176
+ TE+ V YR V
Sbjct: 60 NSRTTENAVVYRLV 73
>gi|124485984|ref|YP_001030600.1| DNA-directed RNA polymerase subunit H [Methanocorpusculum labreanum
Z]
gi|166229325|sp|A2SSM7.1|RPOH_METLZ RecName: Full=DNA-directed RNA polymerase subunit H
gi|124363525|gb|ABN07333.1| DNA-directed RNA polymerase, subunit H [Methanocorpusculum
labreanum Z]
Length = 82
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
+N+ H + P HQ++TD++ + LL + I E LP++ D + G + G V+ +
Sbjct: 4 LNVLLHEMVPDHQIMTDEDVKNLLTTFDITEDHLPKIYHDDPAVKACGAKPGNVIMIVRK 63
Query: 164 GEITESHVTYRCV 176
+ +YR V
Sbjct: 64 SQTAGEATSYRLV 76
>gi|116785870|gb|ABK23892.1| unknown [Picea sitchensis]
Length = 191
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRI 99
+ + RRTVL+ML DR Y V EIN + + F +G+DP + L I+ + ++ PS++I
Sbjct: 9 KLFRIRRTVLQMLNDRDYLVGDFEINTTKEQFLDKFGEDPKKEDLVINKAKRNSPSEQI 67
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 31/37 (83%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL 137
+LLVNI +HVL P+ Q+LT +EK+ LL++Y+++E Q+
Sbjct: 129 ELLVNIKEHVLVPEQQILTPEEKKTLLERYTLKETQV 165
>gi|424812802|ref|ZP_18238042.1| DNA-directed RNA polymerase, subunit H [Candidatus Nanosalinarum
sp. J07AB56]
gi|339757024|gb|EGQ40607.1| DNA-directed RNA polymerase, subunit H [Candidatus Nanosalinarum
sp. J07AB56]
Length = 75
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 108 KHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEIT 167
+H P+H+V+TD+E E+LL+K+ I++ QLP + DA + G V+++T
Sbjct: 5 EHEAVPQHEVMTDEETEELLQKFGIDKSQLPNIKDNDAALKSLEAVPGDVIEITRDSPTA 64
Query: 168 ESHVTYRCV 176
YR V
Sbjct: 65 GEAKYYRVV 73
>gi|386001090|ref|YP_005919389.1| DNA-directed RNA polymerase subunit H [Methanosaeta harundinacea
6Ac]
gi|357209146|gb|AET63766.1| DNA-directed RNA polymerase subunit H [Methanosaeta harundinacea
6Ac]
Length = 78
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 109 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 168
H L P+H +LT +E E++ + Y ++ QLP++ D + + G + G VVK+ + +
Sbjct: 9 HDLVPEHILLTPEEAEEVFRAYGVDSAQLPKIHATDPVVKEIGGKVGDVVKIKRNSPTSG 68
Query: 169 SHVTYRCV 176
V YR V
Sbjct: 69 ESVFYRLV 76
>gi|403257973|ref|XP_003921562.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Saimiri boliviensis boliviensis]
Length = 87
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 32/47 (68%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 147
+LL+NIT+H L P+H V+T +E +LL +Y + E QLP + D +A
Sbjct: 41 ELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPGIQAGDPVA 87
>gi|397771996|ref|YP_006539542.1| RNA polymerase Rpb5 [Natrinema sp. J7-2]
gi|448336442|ref|ZP_21525541.1| DNA-directed RNA polymerase subunit H [Natrinema pallidum DSM 3751]
gi|448342571|ref|ZP_21531519.1| DNA-directed RNA polymerase subunit H [Natrinema gari JCM 14663]
gi|448347125|ref|ZP_21536004.1| DNA-directed RNA polymerase subunit H [Natrinema altunense JCM
12890]
gi|397681089|gb|AFO55466.1| RNA polymerase Rpb5 [Natrinema sp. J7-2]
gi|445625326|gb|ELY78688.1| DNA-directed RNA polymerase subunit H [Natrinema gari JCM 14663]
gi|445629182|gb|ELY82476.1| DNA-directed RNA polymerase subunit H [Natrinema pallidum DSM 3751]
gi|445631462|gb|ELY84694.1| DNA-directed RNA polymerase subunit H [Natrinema altunense JCM
12890]
Length = 75
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V++++H L P+H VL ++ E +L++Y+I+ LP++ + D A E G V+K+
Sbjct: 1 MVDVSQHELVPEHTVLEEEALEDVLEEYNIDRTDLPKIKRNDP-ALPDEAEIGDVIKIVR 59
Query: 163 SGEITESHVTYRCV 176
T+ + YR V
Sbjct: 60 DSRTTDQSIVYRLV 73
>gi|283481324|emb|CAZ69440.1| putative DNA-directed RNA polymerase subunit [Emiliania huxleyi
virus 99B1]
Length = 214
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS- 163
NITKH+L H + ++ + ++ ++ + + P ML D +A + + G ++++ S
Sbjct: 136 NITKHILVKPHTYIDKEQADVIINSFAAKPEHFPMMLSTDPMAVFCHYKIGDLIEIDRSS 195
Query: 164 -GEITESHVTYRCV 176
G +TE +TYR V
Sbjct: 196 LGGVTEGGITYRLV 209
>gi|329765756|ref|ZP_08257325.1| RNA polymerase Rpb5 [Candidatus Nitrosoarchaeum limnia SFB1]
gi|393794930|ref|ZP_10378294.1| RNA polymerase Rpb5 [Candidatus Nitrosoarchaeum limnia BG20]
gi|329137822|gb|EGG42089.1| RNA polymerase Rpb5 [Candidatus Nitrosoarchaeum limnia SFB1]
Length = 83
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%)
Query: 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
V + H+ PKH++++ QE E++LKKY+ + +LP + D G++ G ++K+T
Sbjct: 8 VLVPDHIYVPKHEIISKQEAEEVLKKYNCKPTELPLIFVNDPAILGLGVKPGDMIKITRK 67
Query: 164 GEITESHVTYRCV 176
+ YR V
Sbjct: 68 SPTAGESLYYRYV 80
>gi|73852578|ref|YP_293862.1| putative DNA-directed RNA polymerase subunit [Emiliania huxleyi
virus 86]
gi|72415294|emb|CAI65531.1| putative DNA-directed RNA polymerase subunit [Emiliania huxleyi
virus 86]
gi|347481669|gb|AEO97655.1| hypothetical protein ENVG_00375 [Emiliania huxleyi virus 84]
gi|347600560|gb|AEP15047.1| hypothetical protein EOVG_00110 [Emiliania huxleyi virus 88]
Length = 214
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS- 163
NITKH+L H + ++ + ++ ++ + + P ML D +A + + G ++++ S
Sbjct: 136 NITKHILVKPHTYIDKEQADVIINSFAAKPEHFPMMLSTDPMAVFCHYKIGDLIEIDRSS 195
Query: 164 -GEITESHVTYRCV 176
G +TE +TYR V
Sbjct: 196 LGGVTEGGITYRLV 209
>gi|435845616|ref|YP_007307866.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Natronococcus
occultus SP4]
gi|433671884|gb|AGB36076.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Natronococcus
occultus SP4]
Length = 75
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V++++H L P+H VL + E++L +Y I+ LP++ + D+ A E G V+K+
Sbjct: 1 MVDVSQHELVPEHTVLEEDVLEEVLSEYDIDRTDLPKIKRNDS-ALPDEAEVGDVIKIVR 59
Query: 163 SGEITESHVTYRCV 176
+ T+ V YR V
Sbjct: 60 NSRTTDQAVVYRLV 73
>gi|452208511|ref|YP_007488633.1| DNA-directed RNA polymerase subunit H [Natronomonas moolapensis
8.8.11]
gi|452084611|emb|CCQ37958.1| DNA-directed RNA polymerase subunit H [Natronomonas moolapensis
8.8.11]
Length = 75
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V++++H P+H VL E+LL +Y I LP++ ++DA A E G V+K+
Sbjct: 1 MVDVSQHNQVPEHTVLDRDSVEELLAEYDIRRTDLPKIQRRDA-ALPEDAEVGDVIKIVR 59
Query: 163 SGEITESHVTYRCV 176
T+ + YR V
Sbjct: 60 DSRTTDEAIVYRLV 73
>gi|448396744|ref|ZP_21569192.1| DNA-directed RNA polymerase subunit H [Haloterrigena limicola JCM
13563]
gi|445673273|gb|ELZ25834.1| DNA-directed RNA polymerase subunit H [Haloterrigena limicola JCM
13563]
Length = 75
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V++++H L P+H VL + E++L +Y+I+ LP++ + D A E G V+K+
Sbjct: 1 MVDVSQHELVPEHTVLEEDTLEEVLSEYNIDRTDLPKIKRNDP-ALPDEAEVGDVIKIVR 59
Query: 163 SGEITESHVTYRCV 176
T+ V YR V
Sbjct: 60 DSRTTDQAVVYRLV 73
>gi|116753351|ref|YP_842469.1| DNA-directed RNA polymerase subunit H [Methanosaeta thermophila PT]
gi|121694300|sp|A0B555.1|RPOH_METTP RecName: Full=DNA-directed RNA polymerase subunit H
gi|116664802|gb|ABK13829.1| DNA-directed RNA polymerase, subunit H [Methanosaeta thermophila
PT]
Length = 78
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 39/68 (57%)
Query: 109 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 168
H L P+H +LT +E +++L +Y +E + LP++ D +A+ G + G ++K+ +
Sbjct: 9 HELVPEHILLTPEEAQQVLMQYGVEARHLPKIHVTDPVAKEIGAKVGDIIKIKRKSPTAK 68
Query: 169 SHVTYRCV 176
+ YR V
Sbjct: 69 ESIFYRLV 76
>gi|284163645|ref|YP_003401924.1| RNA polymerase Rpb5 [Haloterrigena turkmenica DSM 5511]
gi|284013300|gb|ADB59251.1| RNA polymerase Rpb5 [Haloterrigena turkmenica DSM 5511]
Length = 75
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V++++H L P+H VL + E++L +Y+I+ LP++ + D A E G V+K+
Sbjct: 1 MVDVSQHELVPEHTVLDEDALEEVLDEYAIDRTDLPKIKRSDP-ALPDDAEIGDVIKIVR 59
Query: 163 SGEITESHVTYRCV 176
+ + V YR V
Sbjct: 60 NSRTADQAVVYRLV 73
>gi|407461848|ref|YP_006773165.1| RNA polymerase Rpb5 [Candidatus Nitrosopumilus koreensis AR1]
gi|407045470|gb|AFS80223.1| RNA polymerase Rpb5 [Candidatus Nitrosopumilus koreensis AR1]
Length = 83
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%)
Query: 106 ITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGE 165
+ H+ PKH++++ QE E++LKKY+ + +LP + D G++ G ++K+T
Sbjct: 10 VPDHIYVPKHEIISKQEAEEVLKKYNCKPTELPLIFVNDPAILGLGVKPGDMIKITRKSP 69
Query: 166 ITESHVTYRCV 176
+ YR V
Sbjct: 70 TAGESLYYRYV 80
>gi|408381649|ref|ZP_11179197.1| DNA-directed RNA polymerase subunit H [Methanobacterium formicicum
DSM 3637]
gi|407815580|gb|EKF86150.1| DNA-directed RNA polymerase subunit H [Methanobacterium formicicum
DSM 3637]
Length = 78
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 164
+I KH L P H VL+ + +K+LKK I +QLP++ D + + + G ++K+T
Sbjct: 5 DILKHELVPDHVVLSKSDVKKVLKKLDIHPEQLPKIKADDPVVKAIEAKPGDILKITRKS 64
Query: 165 EITESHVTYRCVW 177
+ TYR V
Sbjct: 65 QTAGKFETYRLVL 77
>gi|340344215|ref|ZP_08667347.1| DNA-directed RNA polymerase subunit H [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519356|gb|EGP93079.1| DNA-directed RNA polymerase subunit H [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 83
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%)
Query: 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
V + H+ PKH++++ QE E +LKKY+ + +LP + D G++ G ++K+T
Sbjct: 8 VLVPDHIYVPKHEIISKQEAEDVLKKYNCKPTELPLIFVNDPAILGLGVKPGDMIKITRK 67
Query: 164 GEITESHVTYRCV 176
+ YR V
Sbjct: 68 SPTAGESLYYRYV 80
>gi|448297906|ref|ZP_21487940.1| DNA-directed RNA polymerase subunit H [Natronorubrum tibetense
GA33]
gi|445592632|gb|ELY46818.1| DNA-directed RNA polymerase subunit H [Natronorubrum tibetense
GA33]
Length = 75
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V++++H L P+H VL + E++L +Y+I+ LP++ + D+ A E G V+K+
Sbjct: 1 MVDVSQHELVPEHTVLEEDVLEEVLTEYNIDRTDLPKIKRNDS-ALPDEAEIGDVIKIVR 59
Query: 163 SGEITESHVTYRCV 176
T+ V YR V
Sbjct: 60 DSRTTDQAVVYRLV 73
>gi|227828172|ref|YP_002829952.1| DNA-directed RNA polymerase subunit H [Sulfolobus islandicus
M.14.25]
gi|227830879|ref|YP_002832659.1| DNA-directed RNA polymerase subunit H [Sulfolobus islandicus
L.S.2.15]
gi|229579765|ref|YP_002838164.1| DNA-directed RNA polymerase subunit H [Sulfolobus islandicus
Y.G.57.14]
gi|229581566|ref|YP_002839965.1| DNA-directed RNA polymerase subunit H [Sulfolobus islandicus
Y.N.15.51]
gi|229585401|ref|YP_002843903.1| DNA-directed RNA polymerase subunit H [Sulfolobus islandicus
M.16.27]
gi|238620362|ref|YP_002915188.1| DNA-directed RNA polymerase subunit H [Sulfolobus islandicus
M.16.4]
gi|284998386|ref|YP_003420154.1| RNA polymerase subunit, RPB5 [Sulfolobus islandicus L.D.8.5]
gi|385773842|ref|YP_005646409.1| RNA polymerase Rpb5 [Sulfolobus islandicus HVE10/4]
gi|385776477|ref|YP_005649045.1| RNA polymerase Rpb5 [Sulfolobus islandicus REY15A]
gi|259494213|sp|C3MZM6.1|RPOH_SULIA RecName: Full=DNA-directed RNA polymerase subunit H
gi|259494214|sp|C4KIV6.1|RPOH_SULIK RecName: Full=DNA-directed RNA polymerase subunit H
gi|259494215|sp|C3MRK1.1|RPOH_SULIL RecName: Full=DNA-directed RNA polymerase subunit H
gi|259494216|sp|C3MY97.1|RPOH_SULIM RecName: Full=DNA-directed RNA polymerase subunit H
gi|259494217|sp|C3NFS5.1|RPOH_SULIN RecName: Full=DNA-directed RNA polymerase subunit H
gi|259494218|sp|C3N7P8.1|RPOH_SULIY RecName: Full=DNA-directed RNA polymerase subunit H
gi|237823482|pdb|2WAQ|H Chain H, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823497|pdb|2WB1|H Chain H, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823515|pdb|2WB1|Z Chain Z, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|323462795|pdb|2Y0S|H Chain H, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|323462813|pdb|2Y0S|Z Chain Z, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|400260749|pdb|4AYB|H Chain H, Rnap At 3.2ang
gi|400260766|pdb|4B1O|H Chain H, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|400260788|pdb|4B1P|Z Chain Z, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|219814443|gb|ACL36495.1| RNA polymerase subunit 5 [Sulfolobus shibatae B12]
gi|227457327|gb|ACP36014.1| RNA polymerase Rpb5 [Sulfolobus islandicus L.S.2.15]
gi|227459968|gb|ACP38654.1| RNA polymerase Rpb5 [Sulfolobus islandicus M.14.25]
gi|228010480|gb|ACP46242.1| RNA polymerase Rpb5 [Sulfolobus islandicus Y.G.57.14]
gi|228012282|gb|ACP48043.1| RNA polymerase Rpb5 [Sulfolobus islandicus Y.N.15.51]
gi|228020451|gb|ACP55858.1| RNA polymerase Rpb5 [Sulfolobus islandicus M.16.27]
gi|238381432|gb|ACR42520.1| RNA polymerase Rpb5 [Sulfolobus islandicus M.16.4]
gi|284446282|gb|ADB87784.1| RNA polymerase subunit, RPB5 [Sulfolobus islandicus L.D.8.5]
gi|323475225|gb|ADX85831.1| RNA polymerase Rpb5 [Sulfolobus islandicus REY15A]
gi|323477957|gb|ADX83195.1| RNA polymerase Rpb5 [Sulfolobus islandicus HVE10/4]
Length = 84
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 109 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 168
H L PKH+VL+ E K+LK+ I +QLP + D +A+ + G ++++ ++
Sbjct: 14 HYLVPKHEVLSIDEAYKILKELGIRPEQLPWIRASDPVARSINAKPGDIIRIIRKSQLYG 73
Query: 169 SHVTYRCV 176
V+YR V
Sbjct: 74 EVVSYRYV 81
>gi|150399421|ref|YP_001323188.1| DNA-directed RNA polymerase subunit H [Methanococcus vannielii SB]
gi|1173164|sp|P41559.1|RPOH_METVS RecName: Full=DNA-directed RNA polymerase subunit H
gi|581387|emb|CAA51725.1| DNA-directed RNA polymerase [Methanococcus vannielii]
gi|809732|emb|CAA41862.1| subunit H of DNA-dependent RNA polymerase [Methanococcus vannielii]
gi|150012124|gb|ABR54576.1| RNA polymerase Rpb5 [Methanococcus vannielii SB]
Length = 78
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%)
Query: 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
+ ++ H + P+H+++ E LL+KY I+ +Q P++L D + G + G +VK+T
Sbjct: 1 MKVSSHEMVPEHEIIPGDEIPFLLEKYGIKIQQFPKLLISDPLVIEVGAKVGDIVKITRK 60
Query: 164 GEITESHVTYRCV 176
+ V +R V
Sbjct: 61 SQTAGETVYFRLV 73
>gi|21228376|ref|NP_634298.1| DNA-directed RNA polymerase subunit H [Methanosarcina mazei Go1]
gi|452210799|ref|YP_007490913.1| DNA-directed RNA polymerase subunit H [Methanosarcina mazei Tuc01]
gi|20906846|gb|AAM31970.1| DNA-directed RNA polymerase subunit H [Methanosarcina mazei Go1]
gi|452100701|gb|AGF97641.1| DNA-directed RNA polymerase subunit H [Methanosarcina mazei Tuc01]
Length = 107
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 109 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 168
H PKH+++++ E + +L KY IE++QLP++ +D + + G G VVK+T +
Sbjct: 38 HEAVPKHEIMSEGELKSVLSKYFIEKEQLPKIKVQDPVCKEIGAVVGDVVKITRKSQTAG 97
Query: 169 SHVTYRCV 176
YR V
Sbjct: 98 EADYYRLV 105
>gi|413949944|gb|AFW82593.1| hypothetical protein ZEAMMB73_065125 [Zea mays]
Length = 142
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 31/37 (83%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL 137
++ +NI +HVL P+H VLT++EK+ LL++Y+++E Q+
Sbjct: 38 EMFINIKEHVLVPEHHVLTNEEKKTLLEQYTLKETQV 74
>gi|433637471|ref|YP_007283231.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Halovivax ruber
XH-70]
gi|448375018|ref|ZP_21558735.1| DNA-directed RNA polymerase subunit H [Halovivax asiaticus JCM
14624]
gi|433289275|gb|AGB15098.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Halovivax ruber
XH-70]
gi|445659479|gb|ELZ12285.1| DNA-directed RNA polymerase subunit H [Halovivax asiaticus JCM
14624]
Length = 75
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V++++H L P+H VL E +L +Y I+ LP++ + D A E G V+K+
Sbjct: 1 MVDVSQHELVPEHSVLDKAAIEDVLDEYDIDRTDLPKIKRTDP-ALPDDAEVGDVIKIVR 59
Query: 163 SGEITESHVTYRCV 176
T+ + YR V
Sbjct: 60 DSRTTDQAIVYRMV 73
>gi|441432195|ref|YP_007354237.1| RNA polymerase subunit 5 [Acanthamoeba polyphaga moumouvirus]
gi|371945189|gb|AEX63009.1| DNA-directed RNA polymerase subunit 5 [Moumouvirus Monve]
gi|440383275|gb|AGC01801.1| RNA polymerase subunit 5 [Acanthamoeba polyphaga moumouvirus]
Length = 208
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 43/75 (57%)
Query: 102 LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVT 161
LL +I + +P+ ++L+ E ++ +Y++ E + + K D + QY+GL++G ++++
Sbjct: 133 LLSDIISNKFQPEFELLSPTEMKQFKTEYNVNEYTIKKYNKSDPVVQYFGLKKGDIIRII 192
Query: 162 YSGEITESHVTYRCV 176
++ + YR V
Sbjct: 193 RPSIVSGESIDYRIV 207
>gi|289581814|ref|YP_003480280.1| RNA polymerase Rpb5 [Natrialba magadii ATCC 43099]
gi|448282781|ref|ZP_21474063.1| DNA-directed RNA polymerase subunit H [Natrialba magadii ATCC
43099]
gi|448354754|ref|ZP_21543509.1| DNA-directed RNA polymerase subunit H [Natrialba hulunbeirensis JCM
10989]
gi|448356453|ref|ZP_21545186.1| DNA-directed RNA polymerase subunit H [Natrialba chahannaoensis JCM
10990]
gi|289531367|gb|ADD05718.1| RNA polymerase Rpb5 [Natrialba magadii ATCC 43099]
gi|445575396|gb|ELY29871.1| DNA-directed RNA polymerase subunit H [Natrialba magadii ATCC
43099]
gi|445637085|gb|ELY90241.1| DNA-directed RNA polymerase subunit H [Natrialba hulunbeirensis JCM
10989]
gi|445653486|gb|ELZ06357.1| DNA-directed RNA polymerase subunit H [Natrialba chahannaoensis JCM
10990]
Length = 75
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V++++H L P H VL + E++L +Y I+ LP++ + D A G V+K+
Sbjct: 1 MVDVSQHELVPDHSVLEEDALEEVLDEYDIDRTDLPKIKRNDP-ALPDDAAVGDVIKIVR 59
Query: 163 SGEITESHVTYRCV 176
+ T+ V YR V
Sbjct: 60 NSRTTDQAVVYRLV 73
>gi|410722156|ref|ZP_11361468.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Methanobacterium
sp. Maddingley MBC34]
gi|410597475|gb|EKQ52088.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Methanobacterium
sp. Maddingley MBC34]
Length = 78
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 164
+I KH L P H VL+ + +K+LKK I +QLP++ D + + + G ++K+T
Sbjct: 5 DILKHELVPDHVVLSKSDVKKVLKKLDIHPEQLPKIKADDPVVKAIEAKPGDILKITRKS 64
Query: 165 EITESHVTYRCVW 177
TYR V
Sbjct: 65 HTAGKFETYRLVL 77
>gi|313211717|emb|CBY40659.1| unnamed protein product [Oikopleura dioica]
Length = 42
Score = 44.3 bits (103), Expect = 0.020, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 136 QLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
QLPR+ K D +A+Y+G++RGQV K+ E +VTYR
Sbjct: 1 QLPRIQKSDPVARYFGVQRGQVFKIIRRSETAGRYVTYR 39
>gi|15897174|ref|NP_341779.1| DNA-directed RNA polymerase subunit H [Sulfolobus solfataricus P2]
gi|284174419|ref|ZP_06388388.1| DNA-directed RNA polymerase subunit H [Sulfolobus solfataricus
98/2]
gi|384433686|ref|YP_005643044.1| RNA polymerase Rpb5 [Sulfolobus solfataricus 98/2]
gi|20140181|sp|Q980Q9.1|RPOH_SULSO RecName: Full=DNA-directed RNA polymerase subunit H
gi|167744887|pdb|2PMZ|H Chain H, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|167744898|pdb|2PMZ|V Chain V, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|239782150|pdb|3HKZ|H Chain H, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|239782163|pdb|3HKZ|T Chain T, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|13813363|gb|AAK40569.1| DNA-directed RNA polymerase, subunit H (rpoH) [Sulfolobus
solfataricus P2]
gi|261601840|gb|ACX91443.1| RNA polymerase Rpb5 [Sulfolobus solfataricus 98/2]
Length = 84
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 109 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 168
H L PKH+VL E K+LK+ I +QLP + D +A+ + G ++++ ++
Sbjct: 14 HYLVPKHEVLNIDEAYKILKELGIRPEQLPWIRASDPVARSINAKPGDIIRIIRKSQLYG 73
Query: 169 SHVTYRCV 176
V+YR V
Sbjct: 74 EVVSYRYV 81
>gi|448627106|ref|ZP_21671781.1| DNA-directed RNA polymerase subunit H [Haloarcula vallismortis ATCC
29715]
gi|445759734|gb|EMA11010.1| DNA-directed RNA polymerase subunit H [Haloarcula vallismortis ATCC
29715]
Length = 75
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V++++H L P H V+ + + E +L +Y I++ LP++ + D A E G VV++
Sbjct: 1 MVDVSQHDLVPDHSVVDEDDLEAVLTEYDIKKTDLPKIKRTDK-ALPDDAEVGDVVRIER 59
Query: 163 SGEITESHVTYRCV 176
T++ V YR V
Sbjct: 60 DSRTTDTAVVYRLV 73
>gi|238488993|ref|XP_002375734.1| DNA-directed RNA polymerase II, putative [Aspergillus flavus
NRRL3357]
gi|220698122|gb|EED54462.1| DNA-directed RNA polymerase II, putative [Aspergillus flavus
NRRL3357]
Length = 79
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 25 ESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDP 80
E SG VD R+ R + + RTV EML+DRGY V E+ +S+++F+ Y DP
Sbjct: 3 EDYSSGSVD-ADREMTRLWRTWRTVFEMLQDRGYEVTEEEVQISLEEFKQKYS-DP 56
>gi|91773161|ref|YP_565853.1| DNA-directed RNA polymerase subunit H [Methanococcoides burtonii
DSM 6242]
gi|121689251|sp|Q12WS3.1|RPOH_METBU RecName: Full=DNA-directed RNA polymerase subunit H
gi|91712176|gb|ABE52103.1| DNA-directed RNA polymerase subunit H [Methanococcoides burtonii
DSM 6242]
Length = 78
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 164
++ H L P H+++ + + + +L Y++E +QLP++ D IA G E G VVKV
Sbjct: 5 SLLDHELIPHHEIMDEDDLKTVLTHYNVEREQLPKLKVTDPIALEIGAEPGDVVKVIRKS 64
Query: 165 EITESHVTYRCV 176
+ + YR V
Sbjct: 65 QTAGEALYYRYV 76
>gi|73671123|ref|YP_307138.1| DNA-directed RNA polymerase subunit H [Methanosarcina barkeri str.
Fusaro]
gi|121731929|sp|Q464Y4.1|RPOH_METBF RecName: Full=DNA-directed RNA polymerase subunit H
gi|72398285|gb|AAZ72558.1| DNA-directed RNA polymerase, subunit H [Methanosarcina barkeri str.
Fusaro]
Length = 78
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 113 PKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVT 172
PKH+++ + E + +L KYSIE++QLP++ D + + G G VVK+T +
Sbjct: 13 PKHEIMPEGELKSVLSKYSIEKEQLPKIKVHDPVCKEIGAVVGDVVKITRISQTAGEAEY 72
Query: 173 YRCV 176
YR V
Sbjct: 73 YRLV 76
>gi|448320531|ref|ZP_21510017.1| DNA-directed RNA polymerase subunit H [Natronococcus amylolyticus
DSM 10524]
gi|445605433|gb|ELY59355.1| DNA-directed RNA polymerase subunit H [Natronococcus amylolyticus
DSM 10524]
Length = 75
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V++++H L P+H VL + E++L +Y I+ LP++ + D+ A + G V+K+
Sbjct: 1 MVDVSQHELVPEHTVLEEDVLEEVLTEYDIDRTDLPKIKRNDS-ALPDEADVGDVIKIVR 59
Query: 163 SGEITESHVTYRCV 176
+ T+ V YR V
Sbjct: 60 NSRTTDQAVVYRLV 73
>gi|448444632|ref|ZP_21589922.1| DNA-directed RNA polymerase subunit H [Halorubrum saccharovorum DSM
1137]
gi|448457210|ref|ZP_21595705.1| DNA-directed RNA polymerase subunit H [Halorubrum lipolyticum DSM
21995]
gi|448466837|ref|ZP_21599259.1| DNA-directed RNA polymerase subunit H [Halorubrum kocurii JCM
14978]
gi|445686045|gb|ELZ38386.1| DNA-directed RNA polymerase subunit H [Halorubrum saccharovorum DSM
1137]
gi|445810791|gb|EMA60806.1| DNA-directed RNA polymerase subunit H [Halorubrum lipolyticum DSM
21995]
gi|445813263|gb|EMA63243.1| DNA-directed RNA polymerase subunit H [Halorubrum kocurii JCM
14978]
Length = 75
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V++++H L P H +L +E +++L +Y ++ LP++ + D A E G VVK+
Sbjct: 1 MVDVSQHELVPDHVLLEPEEVDEVLAEYDVKRTNLPKIKRTDP-ALPDEAEVGDVVKIVR 59
Query: 163 SGEITESHVTYRCV 176
+ TE V YR V
Sbjct: 60 NSRTTEEAVVYRLV 73
>gi|156937445|ref|YP_001435241.1| DNA-directed RNA polymerase subunit H [Ignicoccus hospitalis
KIN4/I]
gi|156566429|gb|ABU81834.1| DNA-directed RNA polymerase, subunit H [Ignicoccus hospitalis
KIN4/I]
Length = 73
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%)
Query: 109 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 168
HVL P+H L+ +E + L+K+ + +QLP + D +A+ L+ G +VK+ E E
Sbjct: 3 HVLVPQHVKLSPEEAVEELRKWGLRVEQLPLLKASDPVARELDLKPGDIVKIIRKSENAE 62
Query: 169 SHVTYRCV 176
V +R V
Sbjct: 63 EVVVFRYV 70
>gi|23822082|sp|Q8PUQ8.1|RPOH_METMA RecName: Full=DNA-directed RNA polymerase subunit H
Length = 78
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 109 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 168
H PKH+++++ E + +L KY IE++QLP++ +D + + G G VVK+T +
Sbjct: 9 HEAVPKHEIMSEGELKSVLSKYFIEKEQLPKIKVQDPVCKEIGAVVGDVVKITRKSQTAG 68
Query: 169 SHVTYRCV 176
YR V
Sbjct: 69 EADYYRLV 76
>gi|164656180|ref|XP_001729218.1| hypothetical protein MGL_3685 [Malassezia globosa CBS 7966]
gi|159103108|gb|EDP42004.1| hypothetical protein MGL_3685 [Malassezia globosa CBS 7966]
Length = 159
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISI--SH 91
N R++ R + RT+ E++ DRGY V+ E+N+ + F+A + VDR R++ H
Sbjct: 2 NDDRETARLWRVNRTIHELVADRGYEVSEEELNVDLDTFKAEVTSNGIVDRNRMNFFTQH 61
Query: 92 QSDPSKRI 99
+ P +R+
Sbjct: 62 KDKPEERL 69
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 102 LLVNITKHVLKPKHQVLTDQEKEKLLKK 129
LLVNIT H L PKH+VLT EK++LL +
Sbjct: 132 LLVNITHHQLVPKHEVLTPDEKKELLHR 159
>gi|15791391|ref|NP_281215.1| DNA-directed RNA polymerase subunit H [Halobacterium sp. NRC-1]
gi|169237152|ref|YP_001690352.1| DNA-directed RNA polymerase subunit H [Halobacterium salinarum R1]
gi|229564214|sp|B0R8D7.1|RPOH_HALS3 RecName: Full=DNA-directed RNA polymerase subunit H
gi|338819309|sp|P0CX06.1|RPOH_HALSA RecName: Full=DNA-directed RNA polymerase subunit H
gi|43539|emb|CAA40423.1| ORF 75 [Halobacterium salinarum]
gi|10582046|gb|AAG20695.1| DNA-directed RNA polymerase subunit H [Halobacterium sp. NRC-1]
gi|167728218|emb|CAP15006.1| DNA-directed RNA polymerase subunit H [Halobacterium salinarum R1]
Length = 75
Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V++++H L P+H VL ++ + +L Y I+ +LP++ KD A E G VV++
Sbjct: 1 MVDVSQHELVPEHTVLDEETLDGVLADYDIDRTELPKIKYKDP-ALPDNAEIGDVVEIVR 59
Query: 163 SGEITESHVTYRCV 176
T+ V YR V
Sbjct: 60 DSRTTDEAVVYRLV 73
>gi|448316020|ref|ZP_21505658.1| DNA-directed RNA polymerase subunit H [Natronococcus jeotgali DSM
18795]
gi|445610366|gb|ELY64140.1| DNA-directed RNA polymerase subunit H [Natronococcus jeotgali DSM
18795]
Length = 75
Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKD-AIAQYYGLERGQVVKVT 161
+V++++H L P+H VL + E++L +Y I+ LP++ + D A+ + G VVK+
Sbjct: 1 MVDVSQHELVPEHTVLEEDVLEEVLSEYDIDRTDLPKIKRNDSALPDEAAV--GDVVKIV 58
Query: 162 YSGEITESHVTYRCV 176
+ T+ V YR V
Sbjct: 59 RNSRTTDQAVVYRLV 73
>gi|448683944|ref|ZP_21692564.1| DNA-directed RNA polymerase subunit H [Haloarcula japonica DSM
6131]
gi|189332908|dbj|BAG41980.1| RNA polymerase subunit H [Haloarcula japonica]
gi|445783517|gb|EMA34346.1| DNA-directed RNA polymerase subunit H [Haloarcula japonica DSM
6131]
Length = 75
Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V++++H L P H V+ + + E +L +Y I++ LP++ + D A E G VV++
Sbjct: 1 MVDVSQHDLVPDHSVVDEDDLEAVLTEYEIKKTDLPKIKRTDK-ALPDDAEVGDVVRIER 59
Query: 163 SGEITESHVTYRCV 176
T++ V YR V
Sbjct: 60 DSRTTDTAVVYRLV 73
>gi|448734903|ref|ZP_21717123.1| DNA-directed RNA polymerase subunit H [Halococcus salifodinae DSM
8989]
gi|445799533|gb|EMA49912.1| DNA-directed RNA polymerase subunit H [Halococcus salifodinae DSM
8989]
Length = 75
Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V++ +H L P+H ++ D E +++L +Y I LP++ + D A G V+++
Sbjct: 1 MVDVGQHTLVPEHTIVEDDEIDEVLDEYDIRRTDLPKIKRTDP-ALPDDAAAGDVIRIVR 59
Query: 163 SGEITESHVTYRCV 176
T+ V YR V
Sbjct: 60 DSRTTDQAVVYRLV 73
>gi|222478547|ref|YP_002564784.1| DNA-directed RNA polymerase subunit H [Halorubrum lacusprofundi
ATCC 49239]
gi|222451449|gb|ACM55714.1| RNA polymerase Rpb5 [Halorubrum lacusprofundi ATCC 49239]
Length = 75
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V++++H L P H +L +E +++L +Y ++ LP++ + D A E G VVK+
Sbjct: 1 MVDVSQHELVPDHVLLEAEEVDEVLAEYDVKRTNLPKIKRTDP-ALPDEAEVGDVVKIVR 59
Query: 163 SGEITESHVTYRCV 176
+ TE V YR V
Sbjct: 60 NSRTTEEAVVYRLV 73
>gi|20071300|gb|AAH26842.1| Polr2e protein [Mus musculus]
Length = 162
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRIS 88
+ ++ R + R+T++++ DRGY V E++ ++++F+A +G P R L +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRI 99
++H DP+ ++
Sbjct: 62 VAHNDDPTDQM 72
>gi|224087898|ref|XP_002198655.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Taeniopygia guttata]
Length = 119
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 40/67 (59%), Gaps = 5/67 (7%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----ISISHQ 92
++ R + R+T++++ DRGY V E++ ++++F+A +G P R R + ++H
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 93 SDPSKRI 99
DP+ ++
Sbjct: 66 DDPTDQM 72
>gi|149034610|gb|EDL89347.1| rCG29511, isoform CRA_c [Rattus norvegicus]
Length = 146
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++++F+A +G P R R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRI 99
++H DP+ ++
Sbjct: 62 VAHNDDPTDQM 72
>gi|15079165|ref|NP_149917.1| 454R [Invertebrate iridescent virus 6]
gi|82011977|sp|Q91F72.1|454R_IIV6 RecName: Full=Putative DNA-directed RNA polymerase subunit 454R
gi|15042534|gb|AAK82314.1|AF303741_455 454R [Invertebrate iridescent virus 6]
Length = 184
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 13/85 (15%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKY---------SIEEKQLPRMLKKDAIAQYYG 151
DL +NITK+ L+P L D+E + KKY I + P M K D IA+++
Sbjct: 103 DLQMNITKYHLQPLFNKLLDEEAKDFKKKYIKCKIENGKKIILQSFPSMSKSDPIARFFK 162
Query: 152 LERGQVVKVTYSGEITESHVTYRCV 176
+ G V+K+T + V+YR V
Sbjct: 163 YQSGDVIKITNK----DGFVSYRIV 183
>gi|148699662|gb|EDL31609.1| mCG13422, isoform CRA_b [Mus musculus]
Length = 165
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRIS 88
+ ++ R + R+T++++ DRGY V E++ ++++F+A +G P R L +
Sbjct: 5 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVL 64
Query: 89 ISHQSDPSKRI 99
++H DP+ ++
Sbjct: 65 VAHNDDPTDQM 75
>gi|55379098|ref|YP_136948.1| DNA-directed RNA polymerase subunit H [Haloarcula marismortui ATCC
43049]
gi|344213110|ref|YP_004797430.1| DNA-directed RNA polymerase subunit H [Haloarcula hispanica ATCC
33960]
gi|448638076|ref|ZP_21676127.1| DNA-directed RNA polymerase subunit H [Haloarcula sinaiiensis ATCC
33800]
gi|448655086|ref|ZP_21681938.1| DNA-directed RNA polymerase subunit H [Haloarcula californiae ATCC
33799]
gi|448664664|ref|ZP_21684302.1| DNA-directed RNA polymerase subunit H [Haloarcula amylolytica JCM
13557]
gi|448680457|ref|ZP_21690774.1| DNA-directed RNA polymerase subunit H [Haloarcula argentinensis DSM
12282]
gi|55231823|gb|AAV47242.1| DNA-directed RNA polymerase subunit H [Haloarcula marismortui ATCC
43049]
gi|343784465|gb|AEM58442.1| DNA-directed RNA polymerase subunit H [Haloarcula hispanica ATCC
33960]
gi|445763962|gb|EMA15136.1| DNA-directed RNA polymerase subunit H [Haloarcula sinaiiensis ATCC
33800]
gi|445765535|gb|EMA16673.1| DNA-directed RNA polymerase subunit H [Haloarcula californiae ATCC
33799]
gi|445768901|gb|EMA19978.1| DNA-directed RNA polymerase subunit H [Haloarcula argentinensis DSM
12282]
gi|445774251|gb|EMA25272.1| DNA-directed RNA polymerase subunit H [Haloarcula amylolytica JCM
13557]
Length = 75
Score = 43.5 bits (101), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V++++H L P H V+ + + E +L +Y I++ LP++ + D A E G VV++
Sbjct: 1 MVDVSQHDLVPDHSVVDEDDLEAVLTEYEIKKTDLPKIKRTDK-ALPDDAEVGDVVRIVR 59
Query: 163 SGEITESHVTYRCV 176
T+ V YR V
Sbjct: 60 DSRTTDEAVVYRLV 73
>gi|22902245|gb|AAH37681.1| Polymerase (RNA) II (DNA directed) polypeptide E [Mus musculus]
gi|148699663|gb|EDL31610.1| mCG13422, isoform CRA_c [Mus musculus]
Length = 96
Score = 43.5 bits (101), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 40/67 (59%), Gaps = 5/67 (7%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----ISISHQ 92
++ R + R+T++++ DRGY V E++ ++++F+A +G P R R + ++H
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 93 SDPSKRI 99
DP+ ++
Sbjct: 66 DDPTDQM 72
>gi|195164197|ref|XP_002022935.1| GL16452 [Drosophila persimilis]
gi|194104997|gb|EDW27040.1| GL16452 [Drosophila persimilis]
Length = 126
Score = 43.5 bits (101), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQSDPSKRI 99
R+TV EM DRGY V E++ +V+ F ++G P R L + ++H DP R+
Sbjct: 18 RKTVFEMSHDRGYLVTQGELDQTVEQFTELFGDKPSEQRPMRSDLTMVLTHADDPKNRM 76
>gi|124028418|ref|YP_001013738.1| DNA-directed RNA polymerase subunit H [Hyperthermus butylicus DSM
5456]
gi|189043962|sp|A2BN32.1|RPOH_HYPBU RecName: Full=DNA-directed RNA polymerase subunit H
gi|123979112|gb|ABM81393.1| DNA-directed RNA polymerase subunit H [Hyperthermus butylicus DSM
5456]
Length = 83
Score = 43.5 bits (101), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 35/56 (62%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
NI +H L PKH+V+ +E +++++ + +QLP + D +A+ G + G +V++
Sbjct: 9 NILEHELVPKHEVVPPEEAARIIRELGVRPEQLPWLRATDPVARAIGAKPGDIVRI 64
>gi|150402529|ref|YP_001329823.1| DNA-directed RNA polymerase subunit H [Methanococcus maripaludis
C7]
gi|166229327|sp|A6VGU6.1|RPOH_METM7 RecName: Full=DNA-directed RNA polymerase subunit H
gi|150033559|gb|ABR65672.1| RNA polymerase Rpb5 [Methanococcus maripaludis C7]
Length = 78
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%)
Query: 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
+ ++ H + P H+++ +E LL+KY+I+ +QLP++L D + G V+K+T
Sbjct: 1 MKVSSHAMVPTHEIIPREEIPLLLEKYNIKLQQLPKLLDTDPLVLEVEAAPGDVLKITRM 60
Query: 164 GEITESHVTYRCV 176
YR V
Sbjct: 61 SPTAGESTYYRLV 73
>gi|386874557|ref|ZP_10116798.1| RNA polymerase Rpb5, C-terminal domain protein [Candidatus
Nitrosopumilus salaria BD31]
gi|386807632|gb|EIJ67010.1| RNA polymerase Rpb5, C-terminal domain protein [Candidatus
Nitrosopumilus salaria BD31]
Length = 83
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%)
Query: 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
V + H+ P H++++ QE E +LKKY+ + +LP + D G++ G ++K+T
Sbjct: 8 VLVPDHIYVPTHEIISKQEAEDVLKKYNCKPTELPLIFVNDPAILGLGVKPGDMIKITRK 67
Query: 164 GEITESHVTYRCV 176
+ YR V
Sbjct: 68 SPTAGESLYYRYV 80
>gi|429965029|gb|ELA47026.1| hypothetical protein VCUG_01471 [Vavraia culicis 'floridensis']
Length = 223
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 51/74 (68%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL N+TKH L KH+++T +EKEKLL++ I+E+Q+P++L D +A+Y G ++G V+++
Sbjct: 147 ELLFNVTKHSLVFKHRIITLEEKEKLLEEKKIKEEQMPKILVTDPVAKYLGAKKGDVLEI 206
Query: 161 TYSGEITESHVTYR 174
E + +R
Sbjct: 207 ERESETAGFALYWR 220
>gi|126465701|ref|YP_001040810.1| DNA-directed RNA polymerase subunit H [Staphylothermus marinus F1]
gi|189043963|sp|A3DMP2.1|RPOH_STAMF RecName: Full=DNA-directed RNA polymerase subunit H
gi|126014524|gb|ABN69902.1| DNA-directed RNA polymerase, subunit H [Staphylothermus marinus F1]
Length = 91
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 164
NI +H L PKH+VL+ +E +LL+K I+ QLP + D + + + G ++++
Sbjct: 7 NILEHELVPKHEVLSVREAAELLRKLKIKPAQLPWISIDDPVVKAIKAKPGDIIRIIRKS 66
Query: 165 EITESHVTYRCV 176
+ YR V
Sbjct: 67 PTAGEAIAYRYV 78
>gi|149034615|gb|EDL89352.1| rCG29511, isoform CRA_f [Rattus norvegicus]
Length = 175
Score = 43.1 bits (100), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 40/67 (59%), Gaps = 5/67 (7%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ R + R+T++++ DRGY V E++ ++++F+A +G P R L + ++H
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 93 SDPSKRI 99
DP+ ++
Sbjct: 66 DDPTDQM 72
>gi|68074989|ref|XP_679411.1| DNA-directed RNA polymerase 2 [Plasmodium berghei strain ANKA]
gi|56500155|emb|CAI00595.1| DNA-directed RNA polymerase 2, putative [Plasmodium berghei]
Length = 107
Score = 43.1 bits (100), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDV-DRLRISISHQSDPSKRI 99
R+Y R+T EML+DRGY + E + F+ ++ ++ + R+ I SH++D + +I
Sbjct: 7 RFYKCRKTCCEMLEDRGYIITAREKLENFAAFKELFEENEKLRSRMTIITSHKNDANNKI 66
Query: 100 TDLLVN-ITKHVLKPKHQVLTDQEKEKLLKK 129
V+ + K +KP + LT++ EK +++
Sbjct: 67 IVYFVDEVKKTGVKPLRE-LTEKMDEKSIQR 96
>gi|448434389|ref|ZP_21586199.1| DNA-directed RNA polymerase subunit H [Halorubrum tebenquichense
DSM 14210]
gi|448532893|ref|ZP_21621313.1| DNA-directed RNA polymerase subunit H [Halorubrum hochstenium ATCC
700873]
gi|445685305|gb|ELZ37660.1| DNA-directed RNA polymerase subunit H [Halorubrum tebenquichense
DSM 14210]
gi|445706127|gb|ELZ58012.1| DNA-directed RNA polymerase subunit H [Halorubrum hochstenium ATCC
700873]
Length = 76
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 103 LVNITKHVLKPKHQVLTDQEK-EKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVT 161
+V++++H L P H +L D E E++L +Y +++ LP++ + D A E G VVK+
Sbjct: 1 MVDVSQHELVPDHVLLDDPEDVEEVLAEYDVKKTDLPKIKRTDP-ALPDEAEVGDVVKIV 59
Query: 162 YSGEITESHVTYRCV 176
+ T+ V YR V
Sbjct: 60 RNSRTTDEAVVYRLV 74
>gi|20090130|ref|NP_616205.1| DNA-directed RNA polymerase subunit H [Methanosarcina acetivorans
C2A]
gi|22096112|sp|Q8TRB4.1|RPOH_METAC RecName: Full=DNA-directed RNA polymerase subunit H
gi|19915110|gb|AAM04685.1| DNA-directed RNA polymerase, subunit H [Methanosarcina acetivorans
C2A]
Length = 78
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 39/64 (60%)
Query: 113 PKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVT 172
PKH+++++ E + +L KY IE++QLP++ +D +++ G G VV++T +
Sbjct: 13 PKHEIISEGELKSVLSKYLIEKEQLPKIKVQDPVSKEIGAVVGDVVRITRKSQTAGEADY 72
Query: 173 YRCV 176
YR V
Sbjct: 73 YRLV 76
>gi|448427500|ref|ZP_21583815.1| DNA-directed RNA polymerase subunit H [Halorubrum terrestre JCM
10247]
gi|448451262|ref|ZP_21592745.1| DNA-directed RNA polymerase subunit H [Halorubrum litoreum JCM
13561]
gi|448513828|ref|ZP_21616759.1| DNA-directed RNA polymerase subunit H [Halorubrum distributum JCM
9100]
gi|448526662|ref|ZP_21619931.1| DNA-directed RNA polymerase subunit H [Halorubrum distributum JCM
10118]
gi|445678187|gb|ELZ30681.1| DNA-directed RNA polymerase subunit H [Halorubrum terrestre JCM
10247]
gi|445692981|gb|ELZ45144.1| DNA-directed RNA polymerase subunit H [Halorubrum distributum JCM
9100]
gi|445698889|gb|ELZ50927.1| DNA-directed RNA polymerase subunit H [Halorubrum distributum JCM
10118]
gi|445810696|gb|EMA60712.1| DNA-directed RNA polymerase subunit H [Halorubrum litoreum JCM
13561]
Length = 76
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 103 LVNITKHVLKPKHQVLTDQEK-EKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVT 161
+V++++H L P H +L D E+ E++L +Y +++ LP++ + D A E G VVK+
Sbjct: 1 MVDVSQHELVPDHVLLDDPEEVEEVLAEYDVKKTNLPKIKRTDP-ALPDEAEVGDVVKIV 59
Query: 162 YSGEITESHVTYRCV 176
T+ V YR V
Sbjct: 60 RDSRTTDEAVVYRLV 74
>gi|448725407|ref|ZP_21707865.1| DNA-directed RNA polymerase subunit H [Halococcus morrhuae DSM
1307]
gi|445798524|gb|EMA48927.1| DNA-directed RNA polymerase subunit H [Halococcus morrhuae DSM
1307]
Length = 75
Score = 42.7 bits (99), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V +++H L P+H+++ D E + LL +Y I LP++ + D A G VV++
Sbjct: 1 MVEVSQHTLVPEHRLIDDDEIDALLAEYDISRTDLPKIKRTDP-ALPDEAATGDVVRIER 59
Query: 163 SGEITESHVTYRCV 176
T+ V +R V
Sbjct: 60 DSRTTDRAVVHRLV 73
>gi|161527854|ref|YP_001581680.1| RNA polymerase Rpb5 [Nitrosopumilus maritimus SCM1]
gi|238686927|sp|A9A458.1|RPOH_NITMS RecName: Full=DNA-directed RNA polymerase subunit H
gi|160339155|gb|ABX12242.1| RNA polymerase Rpb5 [Nitrosopumilus maritimus SCM1]
Length = 83
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%)
Query: 106 ITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGE 165
+ H+ PKH++++ E E++LKKY+ + +LP + D G++ G ++K+T
Sbjct: 10 VPDHIYVPKHEIISKTEAEEVLKKYNCKPTELPLIFVNDPAILGLGVKPGDMIKITRKSP 69
Query: 166 ITESHVTYRCV 176
+ YR V
Sbjct: 70 TAGEGLYYRYV 80
>gi|448388150|ref|ZP_21565090.1| DNA-directed RNA polymerase subunit H [Haloterrigena salina JCM
13891]
gi|445670801|gb|ELZ23398.1| DNA-directed RNA polymerase subunit H [Haloterrigena salina JCM
13891]
Length = 75
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V++++H L P+H +L + +++L++Y I+ LP++ + D A E G V+K+
Sbjct: 1 MVDVSQHELVPEHTILDEDALDEVLEEYDIDRTDLPKIKRSDP-ALPDEAEIGDVIKIVR 59
Query: 163 SGEITESHVTYRCV 176
+ + V YR V
Sbjct: 60 NSRTADQAVVYRLV 73
>gi|310752281|gb|ADP09443.1| DNA-directed RNA polymerase subunit H [uncultured marine
crenarchaeote E6-3G]
Length = 179
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 52/108 (48%), Gaps = 7/108 (6%)
Query: 69 VQDFRAIYGQDPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLK 128
V D + Y + ++ I + ++ P+ +I KH L ++L+++E+E++++
Sbjct: 78 VTDGKYTYSAKANAPKMGIELIPRTLPT-------FDIFKHKLVSPAEILSEEERERVIE 130
Query: 129 KYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 176
Y E Q P + D ++ G G ++K + E + V+YR V
Sbjct: 131 FYHAEPHQFPWIKASDPVSIILGARPGDILKTSGHSETAGTSVSYRYV 178
>gi|424814013|ref|ZP_18239191.1| DNA-directed RNA polymerase, subunit H [Candidatus Nanosalina sp.
J07AB43]
gi|339757629|gb|EGQ42886.1| DNA-directed RNA polymerase, subunit H [Candidatus Nanosalina sp.
J07AB43]
Length = 77
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%)
Query: 102 LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVT 161
+ +++ H L P+H+ ++++E E+LL ++ IE + LP++ D+ + E G V ++T
Sbjct: 1 MAMDVRDHRLVPEHRKMSEEEVEELLDRHGIERENLPKIKSNDSALKQKDFEPGDVFEIT 60
Query: 162 YSGEITESHVTYRCV 176
S YR V
Sbjct: 61 RSSPTAGKTKYYRMV 75
>gi|448494506|ref|ZP_21609493.1| DNA-directed RNA polymerase subunit H [Halorubrum californiensis
DSM 19288]
gi|445689341|gb|ELZ41581.1| DNA-directed RNA polymerase subunit H [Halorubrum californiensis
DSM 19288]
Length = 76
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 103 LVNITKHVLKPKHQVLTDQEK-EKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVT 161
+V++++H L P H +L D E+ E +L +Y +++ LP++ + D A E G VVK+
Sbjct: 1 MVDVSQHELVPDHVLLDDPEEVEDVLAEYDVKKTNLPKIKRTDP-AIPDEAEVGDVVKIV 59
Query: 162 YSGEITESHVTYRCV 176
T+ V YR V
Sbjct: 60 RDSRTTDEAVVYRLV 74
>gi|448497565|ref|ZP_21610518.1| DNA-directed RNA polymerase subunit H [Halorubrum coriense DSM
10284]
gi|445699796|gb|ELZ51816.1| DNA-directed RNA polymerase subunit H [Halorubrum coriense DSM
10284]
Length = 76
Score = 42.4 bits (98), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 103 LVNITKHVLKPKHQVLTDQEK-EKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVT 161
+V++++H L P H +L D E+ E +L +Y +++ LP++ + D A E G VVK+
Sbjct: 1 MVDVSQHELVPDHVLLDDPEEVEAVLAEYDVKKTNLPKIKRTDP-ALPDEAEVGDVVKIV 59
Query: 162 YSGEITESHVTYRCV 176
T+ V YR V
Sbjct: 60 RDSRTTDEAVVYRLV 74
>gi|451927615|gb|AGF85493.1| polymerase subunit 5 [Moumouvirus goulette]
Length = 208
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 45/75 (60%)
Query: 102 LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVT 161
LL ++ + +P+ ++L+ E +++ +Y++ E + + + D + QY+GL++G +V++
Sbjct: 133 LLSDLISNKFQPEFELLSPTEMKQVKIEYNVNEYTIKKYNRSDPVVQYFGLKKGDIVRII 192
Query: 162 YSGEITESHVTYRCV 176
++ ++ YR V
Sbjct: 193 RPSIVSGENIDYRIV 207
>gi|215713497|dbj|BAG94634.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 167
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 30/38 (78%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL 137
+LLVNI H L P+H++LT ++K+ LL++Y+++E Q+
Sbjct: 128 AELLVNIKDHTLVPEHELLTPEQKKTLLERYTVKETQV 165
Score = 42.4 bits (98), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSD 94
R + RRTV++ML+DRGY V +I+L DF A +G D D L S H+ D
Sbjct: 9 RLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFVARFGDPVDRDHLVFS-RHKKD 61
>gi|70936236|ref|XP_739092.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56515823|emb|CAH87208.1| hypothetical protein PC302370.00.0 [Plasmodium chabaudi chabaudi]
Length = 69
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDV-DRLRISISHQSDPSKRI 99
R+Y R+T EML+DRGY + E + F+ ++ ++ + R+ I SH++D S +I
Sbjct: 7 RFYKCRKTCCEMLEDRGYIITAREKLENFAAFKELFEENEKLRSRMTIITSHKNDASNKI 66
>gi|83315223|ref|XP_730700.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23490505|gb|EAA22265.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 91
Score = 42.4 bits (98), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDV-DRLRISISHQSDPSKRI 99
R+Y R+T EML+DRGY + E + F+ ++ ++ + R+ I SH++D + +I
Sbjct: 7 RFYKCRKTCCEMLEDRGYIITAREKLENFAAFKELFEENEKLRSRMTIITSHKNDANNKI 66
Query: 100 TDLLVN-ITKHVLKP 113
V+ + K +KP
Sbjct: 67 IVYFVDEVKKTGVKP 81
>gi|336476450|ref|YP_004615591.1| RNA polymerase Rpb5 [Methanosalsum zhilinae DSM 4017]
gi|335929831|gb|AEH60372.1| RNA polymerase Rpb5 [Methanosalsum zhilinae DSM 4017]
Length = 78
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 113 PKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVT 172
PKH+++ + E + +LK+Y IE++QLP++ D + + G VVK+T
Sbjct: 13 PKHEIMAEDEIKSVLKEYDIEKEQLPKIKANDPVVKEIDASVGDVVKITRISPTAGKAYY 72
Query: 173 YRCV 176
YR V
Sbjct: 73 YRLV 76
>gi|7208597|gb|AAF40216.1|AF236666_1 RNA polymerase subunit [Emericella nidulans]
Length = 117
Score = 42.4 bits (98), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 32 VDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG 77
D+ R+++R + + RTV EML+DRGY V E+ + + +F+ Y
Sbjct: 19 ADDAERETIRVWRTWRTVFEMLQDRGYEVTEEEVKIDLDEFKREYA 64
>gi|296243133|ref|YP_003650620.1| DNA-directed RNA polymerase subunit H [Thermosphaera aggregans DSM
11486]
gi|296095717|gb|ADG91668.1| DNA-directed RNA polymerase, subunit H [Thermosphaera aggregans DSM
11486]
Length = 87
Score = 42.4 bits (98), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%)
Query: 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
++I +H L PKH+VL +E ++LK + QLP + D + + G + G +V++
Sbjct: 5 IDILEHELVPKHEVLDPKEAAEVLKNLGLHPWQLPWISIDDPVVKAIGAKPGDIVRIYRK 64
Query: 164 GEITESHVTYRCV 176
+ + YR V
Sbjct: 65 SPTAGTSIAYRYV 77
>gi|448737569|ref|ZP_21719609.1| DNA-directed RNA polymerase subunit H [Halococcus thailandensis JCM
13552]
gi|445803713|gb|EMA53996.1| DNA-directed RNA polymerase subunit H [Halococcus thailandensis JCM
13552]
Length = 75
Score = 42.4 bits (98), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V +++H L P+H+++ D E + LL +Y I LP++ + D A G VV++
Sbjct: 1 MVEVSQHTLVPEHRLVDDDEIDALLAEYDISRTDLPKIKRTDP-ALPDEAATGDVVRIER 59
Query: 163 SGEITESHVTYRCV 176
T+ V +R V
Sbjct: 60 DSRTTDRAVVHRLV 73
>gi|257386584|ref|YP_003176357.1| RNA polymerase Rpb5 [Halomicrobium mukohataei DSM 12286]
gi|257168891|gb|ACV46650.1| RNA polymerase Rpb5 [Halomicrobium mukohataei DSM 12286]
Length = 75
Score = 42.4 bits (98), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V++++H L P H ++ + + +L++Y+I++ LP++ + D A E G V+K+
Sbjct: 1 MVDVSQHELVPDHSIVDEDVLDDVLEEYNIKKTDLPKIKRTDP-ATPDEAEVGDVIKIVR 59
Query: 163 SGEITESHVTYRCV 176
+ T+ V YR V
Sbjct: 60 NSRTTDQAVVYRLV 73
>gi|313765818|gb|ADR80315.1| RNA polymerase B5-subunit [Rutilus rutilus]
Length = 129
Score = 42.0 bits (97), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++ +FR+ +G P R R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFRSQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRI 99
++H DP+ ++
Sbjct: 62 VAHNDDPTDQM 72
>gi|323310097|gb|EGA63291.1| Rpb5p [Saccharomyces cerevisiae FostersO]
Length = 114
Score = 42.0 bits (97), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSD 94
R+ R + + RTV EM+KDRGY + E+ L ++DF+A Y D R +S Q++
Sbjct: 5 NERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYC-DSMGRPQRKMMSFQAN 63
Query: 95 PSK 97
P++
Sbjct: 64 PTE 66
>gi|71019505|ref|XP_759983.1| hypothetical protein UM03836.1 [Ustilago maydis 521]
gi|46099489|gb|EAK84722.1| hypothetical protein UM03836.1 [Ustilago maydis 521]
Length = 554
Score = 42.0 bits (97), Expect = 0.092, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY---GQDPDVDRLRISISHQS 93
R+++R + RT+ E+++DRGY VA EI++ ++ F+A Y G D ++L H
Sbjct: 5 RETVRLWRVNRTIHELVRDRGYQVADDEISVDLETFKAEYAPTGGSVDRNKLNFFTEHGE 64
Query: 94 DPSKRI 99
++R+
Sbjct: 65 HENQRL 70
>gi|323305973|gb|EGA59708.1| Rpb5p [Saccharomyces cerevisiae FostersB]
Length = 114
Score = 42.0 bits (97), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSD 94
R+ R + + RTV EM+KDRGY + E+ L ++DF+A Y D R +S Q++
Sbjct: 5 NERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYC-DSMGRPQRKMMSFQAN 63
Query: 95 PSK 97
P++
Sbjct: 64 PTE 66
>gi|413952169|gb|AFW84818.1| hypothetical protein ZEAMMB73_052663 [Zea mays]
Length = 134
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIT 100
R Y RRTV++ML+DRGY V E+ S +DF +G+ + L I+ ++DPS +++
Sbjct: 14 RLYRIRRTVMQMLRDRGYLVVDHELATSRRDFLRKFGESFHREDLLINKYKKNDPSDQVS 73
>gi|401022|sp|P31815.1|RPOH_THECE RecName: Full=DNA-directed RNA polymerase subunit H
gi|809777|emb|CAA41801.1| DNA-dependent RNA polymerase (subunit H) [Thermococcus celer]
gi|809778|emb|CAA47721.1| Subunit H of DNA-dependent RNA polymerase [Thermococcus celer]
Length = 82
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 40/72 (55%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 164
+I H L P+H++L+++E ++LL++Y I+ QLP++ D G + G V+++
Sbjct: 8 DIFAHELVPEHRILSEEETKELLRRYRIQISQLPQIKASDPAVVALGAKPGDVLEIKRKS 67
Query: 165 EITESHVTYRCV 176
+ YR V
Sbjct: 68 RTAGYYYYYRLV 79
>gi|215399667|gb|ACJ65826.1| RNA polymerase II [Oreochromis niloticus]
Length = 108
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----ISISHQSDP 95
R + R+T++++ DRGY V E++ ++++F++ +G P R R + ++H DP
Sbjct: 1 RLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKSQFGDKPSEGRPRRTDLTVLVAHNDDP 60
Query: 96 SKRI 99
+ ++
Sbjct: 61 TDQM 64
>gi|384497180|gb|EIE87671.1| hypothetical protein RO3G_12382 [Rhizopus delemar RA 99-880]
Length = 140
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 24/29 (82%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKK 129
+LLVNIT HVL PKH+VLT +EK LL++
Sbjct: 112 ELLVNITHHVLVPKHEVLTAEEKSTLLQR 140
Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 52 MLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR--LRISISHQSDPSKRI 99
M+ DRGY V+ SE+++ ++ F+ + DVDR L + + DP+ ++
Sbjct: 1 MVHDRGYLVSQSELDMDLESFKRTFAPSGDVDRDQLTFVVQKKDDPTDQL 50
>gi|413923120|gb|AFW63052.1| hypothetical protein ZEAMMB73_163602 [Zea mays]
Length = 222
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 30/37 (81%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL 137
++ +NI +HVL +H VLT++EK+ LL++Y+++E Q+
Sbjct: 114 EMFINIKEHVLVSEHHVLTNEEKKTLLERYTLKETQV 150
>gi|159905696|ref|YP_001549358.1| DNA-directed RNA polymerase subunit H [Methanococcus maripaludis
C6]
gi|238686972|sp|A9A9V3.1|RPOH_METM6 RecName: Full=DNA-directed RNA polymerase subunit H
gi|159887189|gb|ABX02126.1| RNA polymerase Rpb5 [Methanococcus maripaludis C6]
Length = 78
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%)
Query: 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
+ ++ H + P H+++ +E LL+KY+I+ +QLP++L D + G V+K+T
Sbjct: 1 MKVSSHEMVPTHEIIPREEIPLLLEKYNIKLQQLPKLLDTDPLVLETEATPGDVLKITRM 60
Query: 164 GEITESHVTYRCV 176
YR V
Sbjct: 61 SPTAGESTYYRLV 73
>gi|355570726|ref|ZP_09041996.1| RNA polymerase Rpb5 [Methanolinea tarda NOBI-1]
gi|354826008|gb|EHF10224.1| RNA polymerase Rpb5 [Methanolinea tarda NOBI-1]
Length = 83
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 40/73 (54%)
Query: 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
+N+ +H++ P H++++++E + L Y I +QLP++ D + G + G V+++ +
Sbjct: 5 LNVLEHIMVPDHKIMSEEEIQHLYSLYHITSEQLPKIYHDDPAVKAIGAKVGDVIRIIRT 64
Query: 164 GEITESHVTYRCV 176
++R V
Sbjct: 65 SHTAGRAESFRLV 77
>gi|209738396|gb|ACI70067.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Salmo
salar]
Length = 159
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ R + R+T++++ DRGY V E++ ++ +F++ +G P R L + ++H
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 93 SDPSKRI 99
DP+ ++
Sbjct: 66 DDPTDQM 72
>gi|347522773|ref|YP_004780343.1| RNA polymerase Rpb5 [Pyrolobus fumarii 1A]
gi|343459655|gb|AEM38091.1| RNA polymerase Rpb5 [Pyrolobus fumarii 1A]
Length = 105
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 37/72 (51%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 164
N+ +H P H+VL+ +E ++L++ +E QLP + D + + G + G ++++
Sbjct: 28 NVLEHEYVPPHRVLSPEEAARVLRELGVEPWQLPWISYNDPVVKAIGAKPGDIIEIRRKS 87
Query: 165 EITESHVTYRCV 176
+ YR V
Sbjct: 88 PTAGEIIVYRLV 99
>gi|448476276|ref|ZP_21603440.1| DNA-directed RNA polymerase subunit H [Halorubrum aidingense JCM
13560]
gi|445815825|gb|EMA65744.1| DNA-directed RNA polymerase subunit H [Halorubrum aidingense JCM
13560]
Length = 76
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 103 LVNITKHVLKPKHQVLTDQEK-EKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVT 161
+V++++H L P H +L D E+ + +L +Y ++ LP++ + D A E G VVK+
Sbjct: 1 MVDVSQHELVPDHVLLDDPEEVDAVLAEYDVKRTNLPKIKRTDP-ALPDEAEVGDVVKIV 59
Query: 162 YSGEITESHVTYRCV 176
+ T+ + YR V
Sbjct: 60 RNSRTTDEAIVYRLV 74
>gi|429217658|ref|YP_007175648.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Caldisphaera
lagunensis DSM 15908]
gi|429134187|gb|AFZ71199.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Caldisphaera
lagunensis DSM 15908]
Length = 84
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 164
I H L PKH++L +E ++LK I+ QLPR+ D + + G + G ++++
Sbjct: 10 KILGHYLVPKHRILPLEESVEVLKSLGIKPWQLPRISINDPVVKILGGKPGDIIEIERDS 69
Query: 165 EITESHVTYRCV 176
+ YR V
Sbjct: 70 PTAGKYKAYRVV 81
>gi|126178248|ref|YP_001046213.1| DNA-directed RNA polymerase subunit H [Methanoculleus marisnigri
JR1]
gi|126178261|ref|YP_001046226.1| DNA-directed RNA polymerase subunit H [Methanoculleus marisnigri
JR1]
gi|125861042|gb|ABN56231.1| DNA-directed RNA polymerase, subunit H [Methanoculleus marisnigri
JR1]
gi|125861055|gb|ABN56244.1| DNA-directed RNA polymerase, subunit H [Methanoculleus marisnigri
JR1]
Length = 83
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%)
Query: 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
+++ H + P HQ++ ++E LL Y I +QLP++ D + G E G V+++
Sbjct: 5 LDVLNHEMVPDHQIMGEEEVADLLATYHITLEQLPKIYHDDPAVKAIGGEVGNVIRIVRD 64
Query: 164 GEITESHVTYRCV 176
YR V
Sbjct: 65 SRTAGRAEAYRLV 77
>gi|119719205|ref|YP_919700.1| DNA-directed RNA polymerase subunit H [Thermofilum pendens Hrk 5]
gi|189043964|sp|A1RWW7.1|RPOH_THEPD RecName: Full=DNA-directed RNA polymerase subunit H
gi|119524325|gb|ABL77697.1| DNA-directed RNA polymerase, subunit H [Thermofilum pendens Hrk 5]
Length = 80
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 37/72 (51%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 164
++ +H L PKH +L+ +E +LLK +++ +LP + D +A+ + G V+ +
Sbjct: 6 DVLEHELVPKHVLLSKEEANRLLKAMGLKKSELPWIYSTDPVARALKAKPGDVIMIIRQS 65
Query: 165 EITESHVTYRCV 176
V +R V
Sbjct: 66 PTAGESVAFRLV 77
>gi|222445209|ref|ZP_03607724.1| hypothetical protein METSMIALI_00832 [Methanobrevibacter smithii
DSM 2375]
gi|222434774|gb|EEE41939.1| RNA polymerase Rpb5 domain protein [Methanobrevibacter smithii DSM
2375]
Length = 69
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 110 VLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITES 169
+L PKH+++TD E E L + + LPR+ D + + + ++++T + +
Sbjct: 1 MLVPKHEIMTDSEIEDLKNSADYDIENLPRIKVDDPVVKDIDAKENDILRITRESDTAGT 60
Query: 170 HVTYRCV 176
VTYR V
Sbjct: 61 FVTYRIV 67
>gi|340500684|gb|EGR27545.1| DNA-directed polymerase II polypeptide E, putative
[Ichthyophthirius multifiliis]
Length = 188
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 131 SIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 176
+I + QLP++L D I +Y+GL QV K+ E ++TYR V
Sbjct: 142 NITDSQLPKILPTDPINKYFGLRIKQVFKIERDSETAGKYITYRIV 187
>gi|443920437|gb|ELU40353.1| hypothetical protein AG1IA_05623 [Rhizoctonia solani AG-1 IA]
Length = 133
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 23/30 (76%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKK 129
DLLVNIT H L P+HQVLT EK+ LL++
Sbjct: 104 ADLLVNITHHKLVPQHQVLTQVEKKALLER 133
>gi|14325447|dbj|BAB60351.1| DNA-directed RNA polymerase H [Thermoplasma volcanium GSS1]
Length = 104
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAI-----AQYYGLERGQVVK 159
N+ H L P+H +++++E++ +LK+ IE++ LPR+ D + A + ++ G V+K
Sbjct: 22 NVLDHNLVPEHHIVSEEEEKTILKELGIEKEFLPRISPNDPVIKALEAIHGKIKDGTVIK 81
Query: 160 VTYSGEITESHVTYRCV 176
+ + V YR V
Sbjct: 82 IIRNSPTMGHSVYYRVV 98
>gi|134045263|ref|YP_001096749.1| DNA-directed RNA polymerase subunit H [Methanococcus maripaludis
C5]
gi|166229326|sp|A4FWF9.1|RPOH_METM5 RecName: Full=DNA-directed RNA polymerase subunit H
gi|132662888|gb|ABO34534.1| DNA-directed RNA polymerase, subunit H [Methanococcus maripaludis
C5]
Length = 78
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%)
Query: 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
+ ++ H + P H+++ +E LL+KY I+ +QLP++L D + G V+K+T
Sbjct: 1 MKVSSHEMVPTHEIIPREEIPLLLEKYDIKLQQLPKLLDTDPLVLEVEATPGDVLKITRM 60
Query: 164 GEITESHVTYRCV 176
YR V
Sbjct: 61 SPTAGETTYYRLV 73
>gi|351737382|gb|AEQ60417.1| RNA polymerase subunit 5 [Acanthamoeba castellanii mamavirus]
gi|398257084|gb|EJN40692.1| RNA polymerase subunit 5 [Acanthamoeba polyphaga lentillevirus]
Length = 205
Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/76 (21%), Positives = 40/76 (52%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+ L ++ + +P+ Q+L+ E E + +Y+ L +M++ D I +Y+ L++ ++++
Sbjct: 129 EFLADLLSNEFQPRFQLLSPTEMESVKTEYNANPYTLKKMVRSDPIVRYFALKKNDIIRI 188
Query: 161 TYSGEITESHVTYRCV 176
+ + YR V
Sbjct: 189 IRPSATSGQGIDYRVV 204
>gi|167043845|gb|ABZ08534.1| putative RNA polymerase Rpb5, C-terminal domain protein [uncultured
marine crenarchaeote HF4000_APKG3E18]
Length = 83
Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 96 SKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERG 155
++++T L N H+ PKH+++T +E E++L+KY + LP + D G++ G
Sbjct: 3 TRKLTTLAPN---HIDVPKHEIMTVKEAEEVLEKYHCKATDLPLIFVTDPAIIGIGVKPG 59
Query: 156 QVVKVT 161
++K+T
Sbjct: 60 DMIKIT 65
>gi|118576749|ref|YP_876492.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Cenarchaeum
symbiosum A]
gi|118195270|gb|ABK78188.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Cenarchaeum
symbiosum A]
Length = 83
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 40/73 (54%)
Query: 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
+ + HV P H+++T E E++L+K++ + +LP +L +D G++ G ++++T
Sbjct: 8 ILVPDHVYVPLHEIITKAEAEEVLEKFNCKPTELPLILVEDPAIIGLGVKPGDMIRITRK 67
Query: 164 GEITESHVTYRCV 176
+ YR V
Sbjct: 68 SSTAGESIYYRYV 80
>gi|310831429|ref|YP_003970072.1| putative DNA-directed RNA polymerase subunit Rpb5 [Cafeteria
roenbergensis virus BV-PW1]
gi|309386613|gb|ADO67473.1| putative DNA-directed RNA polymerase subunit Rpb5 [Cafeteria
roenbergensis virus BV-PW1]
Length = 190
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 113 PKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVT 172
P+H +L+++EKE++L Y +EK + ++ D +A+Y G ++G ++K+ T +
Sbjct: 128 PEHILLSEKEKEEILSVY--KEKNIAKIFVTDMMARYLGAKKGDLIKIIRKTLNTGESIY 185
Query: 173 YRCVW 177
YR V+
Sbjct: 186 YRRVF 190
>gi|13542014|ref|NP_111702.1| DNA-directed RNA polymerase subunit H [Thermoplasma volcanium GSS1]
gi|20140160|sp|Q979F2.2|RPOH_THEVO RecName: Full=DNA-directed RNA polymerase subunit H
Length = 87
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAI-----AQYYGLERGQVVK 159
N+ H L P+H +++++E++ +LK+ IE++ LPR+ D + A + ++ G V+K
Sbjct: 5 NVLDHNLVPEHHIVSEEEEKTILKELGIEKEFLPRISPNDPVIKALEAIHGKIKDGTVIK 64
Query: 160 VTYSGEITESHVTYRCV 176
+ + V YR V
Sbjct: 65 IIRNSPTMGHSVYYRVV 81
>gi|307353878|ref|YP_003894929.1| RNA polymerase Rpb5 [Methanoplanus petrolearius DSM 11571]
gi|307157111|gb|ADN36491.1| RNA polymerase Rpb5 [Methanoplanus petrolearius DSM 11571]
Length = 83
Score = 40.4 bits (93), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 37/72 (51%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 164
++ H++ P HQ+++ +E E+LL Y I QLP++ D + G + V+++ +
Sbjct: 6 SVIGHMMVPDHQIMSVEEVEELLNSYKITRDQLPKIYHDDPAVKEIGAKINDVIRIVRNS 65
Query: 165 EITESHVTYRCV 176
+ YR V
Sbjct: 66 QTAGRAEAYRQV 77
>gi|403166115|ref|XP_003326024.2| hypothetical protein PGTG_07854 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375166076|gb|EFP81605.2| hypothetical protein PGTG_07854 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1190
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 21 GEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRG------YAVALSEINLS-VQDFR 73
+P E + GF+D G RD+LRYYL R LE LK + A L+EI L+ + +
Sbjct: 526 SKPFEEVVLGFIDRGERDALRYYLISR--LERLKRQDLTQRMMLATWLTEIYLAKINELE 583
Query: 74 AIYGQDP 80
+ G DP
Sbjct: 584 DLVGADP 590
>gi|154151475|ref|YP_001405093.1| DNA-directed RNA polymerase subunit H [Methanoregula boonei 6A8]
gi|154000027|gb|ABS56450.1| RNA polymerase subunit, RPB5 [Methanoregula boonei 6A8]
Length = 83
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%)
Query: 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
+N+ HV+ P HQ+++++E LL +Y I +QLP++ D + + V+++
Sbjct: 5 LNVLSHVMVPDHQLMSEEEVSALLSRYHITTEQLPKIYHDDPAVKAIDAKVDDVIRIIRK 64
Query: 164 GEITESHVTYRCV 176
YR V
Sbjct: 65 SHTAGRAEAYRLV 77
>gi|268323370|emb|CBH36958.1| DNA-directed RNA polymerase subunit H [uncultured archaeon]
Length = 80
Score = 40.0 bits (92), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%)
Query: 106 ITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGE 165
I H L P+H V+ + E ++LL KY I+ QLP++ D G + G VV++T
Sbjct: 8 IHGHELVPEHVVMDESEVKELLDKYKIKRVQLPKIKVTDPAINGLGAKVGDVVEITRQSR 67
Query: 166 ITESHVTYRCV 176
+++R V
Sbjct: 68 TAGKALSFRLV 78
>gi|325969564|ref|YP_004245756.1| RNA polymerase Rpb5 [Vulcanisaeta moutnovskia 768-28]
gi|323708767|gb|ADY02254.1| RNA polymerase Rpb5 [Vulcanisaeta moutnovskia 768-28]
Length = 90
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%)
Query: 106 ITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGE 165
I +H PK +++ +E +++LK+ + + QLP + D +A+ G + G V+++ +
Sbjct: 17 ILEHEYMPKAEIVPKEEVKEILKQLNAKVFQLPWIRASDPLARAIGAKPGNVIRIIRKSD 76
Query: 166 ITESHVTYRCV 176
VTYR V
Sbjct: 77 TAGEFVTYRFV 87
>gi|357290920|gb|AET73520.1| hypothetical protein EMVG_00234 [Emiliania huxleyi virus PS401]
Length = 191
Score = 39.7 bits (91), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 13/122 (10%)
Query: 47 RTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRITDLLV-- 104
R VL + R + V +E +S++ R + P+ + +S + +++ D+ V
Sbjct: 53 RPVLSQQEARVFFVT-NEARISIKTIRCLQETHPNCLLILVSAGGATPFARKEDDVQVFE 111
Query: 105 ------NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVV 158
++T H L P+H V+T E L + K LP + DAI+++ L +VV
Sbjct: 112 LSSLTHDVTTHSLVPRHTVMTQTEIAML----TTSPKALPLLPTTDAISRFLDLRVDEVV 167
Query: 159 KV 160
K+
Sbjct: 168 KI 169
>gi|448417593|ref|ZP_21579449.1| DNA-directed RNA polymerase subunit H [Halosarcina pallida JCM
14848]
gi|445677547|gb|ELZ30047.1| DNA-directed RNA polymerase subunit H [Halosarcina pallida JCM
14848]
Length = 75
Score = 39.7 bits (91), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V++++H L P+H VL ++E E++L++Y ++ LP++ + D A G+E G VVK+
Sbjct: 1 MVDVSQHKLVPEHTVLEEEEVEEVLEEYDVKRTSLPKIKRTDPAAP-DGVEVGDVVKIVR 59
Query: 163 SGEITESHVTYRCV 176
T+ +TYR V
Sbjct: 60 DSRTTDKAITYRLV 73
>gi|167042211|gb|ABZ06943.1| putative RNA polymerase Rpb5, C-terminal domain protein [uncultured
marine crenarchaeote HF4000_ANIW93I24]
Length = 83
Score = 39.7 bits (91), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%)
Query: 109 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 168
H+ PKH+++T +E E +L+KY + LP + D G++ G ++KVT
Sbjct: 13 HIDVPKHEIMTRKEAEGVLEKYHCKATDLPLIFVTDPAIVGIGVKPGDMIKVTRKSATAG 72
Query: 169 SHVTYRCV 176
YR V
Sbjct: 73 ESFYYRYV 80
>gi|352682854|ref|YP_004893378.1| DNA-directed RNA polymerase subunit H [Thermoproteus tenax Kra 1]
gi|350275653|emb|CCC82300.1| DNA-directed RNA polymerase, subunit H [Thermoproteus tenax Kra 1]
Length = 99
Score = 39.7 bits (91), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 105 NITKHVLKPKHQV-LTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
+ +H L P+ V LT +E LL+K + Q+P + D + + G + G V+K+
Sbjct: 24 RVLEHSLGPQEVVVLTKEEARALLRKLRVRPWQIPWIRSSDPLVKAVGAKPGDVIKIVRR 83
Query: 164 GEITESHVTYRCV 176
E V YR V
Sbjct: 84 SETAGESVIYRLV 96
>gi|330507362|ref|YP_004383790.1| DNA-directed RNA polymerase subunit H [Methanosaeta concilii GP6]
gi|328928170|gb|AEB67972.1| DNA-directed RNA polymerase subunit H [Methanosaeta concilii GP6]
Length = 78
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 109 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 168
H + P+H +LT +E +LK++ I QLP++ D A+ G + G ++K+ +
Sbjct: 9 HEMVPEHILLTPEEGLDVLKEFGIGAPQLPKIHISDPAAKEIGAKVGDIIKIIRKSTTAK 68
Query: 169 SHVTYRCV 176
YR V
Sbjct: 69 HSTFYRLV 76
>gi|448731187|ref|ZP_21713490.1| DNA-directed RNA polymerase subunit H [Halococcus saccharolyticus
DSM 5350]
gi|445792781|gb|EMA43382.1| DNA-directed RNA polymerase subunit H [Halococcus saccharolyticus
DSM 5350]
Length = 76
Score = 39.3 bits (90), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 103 LVNITKHVLKPKHQVL-TDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVT 161
+V++ +H L P+H ++ D E +++L +Y I LP++ + D A G V+++
Sbjct: 1 MVDVGQHTLVPEHTIVEDDSEIDEVLDEYDIRRTDLPKIKRTDP-ALPDDAAAGDVIRIV 59
Query: 162 YSGEITESHVTYRCV 176
T+ V YR V
Sbjct: 60 RDSRTTDQAVVYRLV 74
>gi|307595329|ref|YP_003901646.1| RNA polymerase Rpb5 [Vulcanisaeta distributa DSM 14429]
gi|307550530|gb|ADN50595.1| RNA polymerase Rpb5 [Vulcanisaeta distributa DSM 14429]
Length = 90
Score = 39.3 bits (90), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 39/71 (54%)
Query: 106 ITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGE 165
I +H PK +++ +E +++L++ + + QLP + D +A+ G + G V+++ +
Sbjct: 17 ILEHEYMPKAEIVPKEEVKEILRQLNAKVFQLPWIRASDPLARAIGAKPGNVIRIIRKSD 76
Query: 166 ITESHVTYRCV 176
VTYR V
Sbjct: 77 TAGEFVTYRFV 87
>gi|327311707|ref|YP_004338604.1| DNA-directed RNA polymerase subunit H [Thermoproteus uzoniensis
768-20]
gi|326948186|gb|AEA13292.1| DNA-directed RNA polymerase subunit H [Thermoproteus uzoniensis
768-20]
Length = 79
Score = 39.3 bits (90), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 105 NITKHVLKP-KHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
I +HVL P + +LT +E LL++ + Q+P + D + + G + G V+++
Sbjct: 4 KILEHVLGPVEVSILTKEEARALLRRLHVRPWQIPWIRSSDPLVKAVGAKPGDVLRIVRR 63
Query: 164 GEITESHVTYRCV 176
E V YR V
Sbjct: 64 SETAGESVIYRLV 76
>gi|409722463|ref|ZP_11269913.1| DNA-directed RNA polymerase subunit H [Halococcus hamelinensis
100A6]
gi|448722473|ref|ZP_21705008.1| DNA-directed RNA polymerase subunit H [Halococcus hamelinensis
100A6]
gi|445789473|gb|EMA40158.1| DNA-directed RNA polymerase subunit H [Halococcus hamelinensis
100A6]
Length = 76
Score = 39.3 bits (90), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 103 LVNITKHVLKPKHQVL-TDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVT 161
+V++ +H L P+H V+ D E +++L +Y I+ LP++ + D A G V+++
Sbjct: 1 MVDVGQHTLVPEHTVVEDDSEIDEVLAEYDIKRTDLPKIKRTDP-ALPDEAATGDVIRIV 59
Query: 162 YSGEITESHVTYRCV 176
T+ V YR V
Sbjct: 60 RDSRTTDQAVVYRLV 74
>gi|311977611|ref|YP_003986731.1| DNA-directed RNA polymerase subunit 5 [Acanthamoeba polyphaga
mimivirus]
gi|82000012|sp|Q5UPX7.1|RPO5_MIMIV RecName: Full=DNA-directed RNA polymerase subunit 5
gi|55416858|gb|AAV50508.1| RNA polymerase subunit 5 [Acanthamoeba polyphaga mimivirus]
gi|308204273|gb|ADO18074.1| DNA-directed RNA polymerase subunit 5 [Acanthamoeba polyphaga
mimivirus]
gi|339061167|gb|AEJ34471.1| RNA polymerase subunit 5 [Acanthamoeba polyphaga mimivirus]
Length = 205
Score = 39.3 bits (90), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/76 (19%), Positives = 40/76 (52%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+ L ++ + +P+ Q+L+ E E + +Y+ L ++++ D I +Y+ L++ ++++
Sbjct: 129 EFLADLLSNEFQPRFQLLSPSEMESVKTEYNANPYTLKKIVRSDPIVRYFALKKNDIIRI 188
Query: 161 TYSGEITESHVTYRCV 176
+ + YR V
Sbjct: 189 IRPSATSGQGIDYRVV 204
>gi|167044135|gb|ABZ08818.1| putative RNA polymerase Rpb5, C-terminal domain protein [uncultured
marine crenarchaeote HF4000_APKG5C13]
Length = 91
Score = 38.9 bits (89), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 96 SKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERG 155
+K++ L N H+ PKH+++T +E + +L+KY + LP + D G++ G
Sbjct: 11 TKKVMTLAPN---HIDVPKHEIMTRKEADGVLEKYHCKATDLPLIFVSDPAIIAIGVKPG 67
Query: 156 QVVKVTYSGEITESHVTYRCV 176
++K+T YR V
Sbjct: 68 DMIKITRKSATAGESFYYRYV 88
>gi|322510703|gb|ADX06017.1| putative DNA-directed RNA polymerase II [Organic Lake phycodnavirus
1]
Length = 199
Score = 38.5 bits (88), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 98 RITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSI-EEKQLPRMLKKDAIAQYYGLERGQ 156
+I L NI +H PKH L EK +L K+++I ++ Q+P++ + D +A L G
Sbjct: 118 KIQQLQYNILEHSYVPKHIKLNPTEKIELYKRFNIKDDSQMPQISRFDPVACAIFLRPGD 177
Query: 157 VVKVTYSGEITESHVTYR-CV 176
V K+ +I+ + YR C+
Sbjct: 178 VCKIIRYDKISFENEFYRVCI 198
>gi|149595717|ref|XP_001520959.1| PREDICTED: hypothetical protein LOC100092316, partial
[Ornithorhynchus anatinus]
Length = 157
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 44 LSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----ISISHQSDPSKR 98
LSR ++ DRGY V E++ ++++F+ +G P R R + ++H DP+ +
Sbjct: 44 LSRNAPFQLCHDRGYLVTQDELDQTLEEFKGQFGDKPSEGRPRRTDLTVLVAHNDDPTDQ 103
Query: 99 I 99
+
Sbjct: 104 M 104
>gi|548828|sp|Q03588.1|RPOH_THEAC RecName: Full=DNA-directed RNA polymerase subunit H
gi|48090|emb|CAA48279.1| DNA-directed RNA polymerase [Thermoplasma acidophilum]
Length = 87
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKD----AIAQYYG-LERGQVVK 159
N+ H L P+H ++ ++E++ +LK+ +IE++ LP++ D A+ +G ++ G ++K
Sbjct: 5 NVLDHNLVPEHHIVPEEEEKNILKELNIEKEFLPKISPNDPAIKALEAVHGKIKEGTIIK 64
Query: 160 VTYSGEITESHVTYRCV 176
+ V YR V
Sbjct: 65 IVRKSPTMGHSVYYRVV 81
>gi|340386044|ref|XP_003391518.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like, partial [Amphimedon queenslandica]
Length = 88
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 39 SLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPD-----VDRLRISISHQS 93
+ R + R+TV++M DR Y V E++ ++ F+ +G+ P+ + L I ++H
Sbjct: 7 TYRLWRIRKTVMQMCHDRRYLVTQDELDQTLDQFKEQFGERPNDGHPSRNDLSILVAHND 66
Query: 94 DPSKRI 99
DP+ ++
Sbjct: 67 DPTDQM 72
>gi|16081518|ref|NP_393869.1| DNA-directed RNA polymerase subunit H [Thermoplasma acidophilum DSM
1728]
gi|10639561|emb|CAC11533.1| DNA-DIRECTED RNA POLYMERASE CHAIN H related protein [Thermoplasma
acidophilum]
Length = 91
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKD----AIAQYYG-LERGQVVK 159
N+ H L P+H ++ ++E++ +LK+ +IE++ LP++ D A+ +G ++ G ++K
Sbjct: 9 NVLDHNLVPEHHIVPEEEEKNILKELNIEKEFLPKISPNDPAIKALEAVHGKIKEGTIIK 68
Query: 160 VTYSGEITESHVTYRCV 176
+ V YR V
Sbjct: 69 IVRKSPTMGHSVYYRVV 85
>gi|88601368|ref|YP_501546.1| DNA-directed RNA polymerase subunit H [Methanospirillum hungatei
JF-1]
gi|88186830|gb|ABD39827.1| DNA-directed RNA polymerase, subunit H [Methanospirillum hungatei
JF-1]
Length = 83
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 36/73 (49%)
Query: 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
+N+ KH + P+H ++++++ + L +Y I +QLP++ D G V+K+
Sbjct: 5 LNVLKHEMVPEHSIMSEEDVKNLYARYQIGPEQLPKIYHDDPAVLSIGARISDVIKIVRK 64
Query: 164 GEITESHVTYRCV 176
+YR V
Sbjct: 65 SMTAGRAESYRLV 77
>gi|15228284|ref|NP_188290.1| DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana]
gi|332642330|gb|AEE75851.1| DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana]
Length = 87
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 23/29 (79%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKK 129
+L+VN+ +HV P+HQ LT +EK+K L++
Sbjct: 50 ELIVNVKEHVFVPEHQALTTEEKQKFLER 78
>gi|429191193|ref|YP_007176871.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Natronobacterium
gregoryi SP2]
gi|448326616|ref|ZP_21515965.1| DNA-directed RNA polymerase subunit H [Natronobacterium gregoryi
SP2]
gi|429135411|gb|AFZ72422.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Natronobacterium
gregoryi SP2]
gi|445610908|gb|ELY64673.1| DNA-directed RNA polymerase subunit H [Natronobacterium gregoryi
SP2]
Length = 75
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V++++H L P+H +L ++ E++L +Y I+ LP++ + D+ A E G V+K+
Sbjct: 1 MVDVSQHELVPEHTILEEETLEEVLAEYDIDRTDLPKIKRNDS-ALPDEAEAGDVIKIVR 59
Query: 163 SGEITESHVTYRCV 176
T+ V YR V
Sbjct: 60 DSRTTDQAVVYRLV 73
>gi|297565297|ref|YP_003684269.1| leucyl aminopeptidase [Meiothermus silvanus DSM 9946]
gi|296849746|gb|ADH62761.1| Leucyl aminopeptidase [Meiothermus silvanus DSM 9946]
Length = 491
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 23/126 (18%)
Query: 54 KDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPS---KRITDLLVNITKHV 110
K+ YA+A I L +F+ Y DP+V RLR+ ++ S P+ I VN + +
Sbjct: 123 KEASYALAEGAI-LGAYEFKK-YKSDPEVKRLRLWLARSSGPAVDRAEIVAEAVNYARDL 180
Query: 111 LKPKHQVLTDQE---------KEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERG-----Q 156
+ VLT E +E L+ +E+Q ++++ + +YG+ +G +
Sbjct: 181 VNEPPNVLTPAELAERARELGRETGLQVMVWDERQ----IQQEGMGAFYGVAQGSANPPR 236
Query: 157 VVKVTY 162
+++TY
Sbjct: 237 FIQITY 242
>gi|356506930|ref|XP_003522226.1| PREDICTED: uncharacterized protein LOC100806474 [Glycine max]
Length = 330
Score = 37.0 bits (84), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 99 ITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL 137
+ +LL N+TKH + K++VLTD EK LL + EEKQ+
Sbjct: 259 VDELLFNVTKHGKQQKYEVLTDDEKRALLTELKREEKQI 297
>gi|18312084|ref|NP_558751.1| DNA-directed RNA polymerase subunit H [Pyrobaculum aerophilum str.
IM2]
gi|20140086|sp|Q8ZYR0.1|RPOH_PYRAE RecName: Full=DNA-directed RNA polymerase subunit H
gi|18159513|gb|AAL62933.1| DNA-directed RNA polymerase subunit H (rpoH) [Pyrobaculum
aerophilum str. IM2]
Length = 75
Score = 37.0 bits (84), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 117 VLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 176
V+ +E ++LLK+ + QLP + D +AQ G + G V+K+ V YR V
Sbjct: 13 VIPREEAKELLKRMKLRPWQLPWIRASDPLAQKAGAKPGDVLKIVRESPTAGEAVVYRLV 72
>gi|241696177|ref|XP_002411834.1| RNA polymerase, 25-kDa subunit, putative [Ixodes scapularis]
gi|215504757|gb|EEC14251.1| RNA polymerase, 25-kDa subunit, putative [Ixodes scapularis]
Length = 91
Score = 37.0 bits (84), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 24/30 (80%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKK 129
++LL+NIT+H L P+H VLT +EK +LL +
Sbjct: 62 SELLINITEHELVPEHVVLTPEEKAELLAR 91
>gi|168058522|ref|XP_001781257.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667322|gb|EDQ53955.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 822
Score = 37.0 bits (84), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLER 154
+L+ N T +VL PKH + + E +++ K+ I LP++ +D I ++YG +R
Sbjct: 480 ELMFNPTSNVLVPKHCIASSSELQEM-KEKEISHDSLPKIYAEDRIYKWYGFKR 532
>gi|240103984|ref|YP_002960293.1| DNA-directed RNA polymerase subunit H [Thermococcus gammatolerans
EJ3]
gi|259494219|sp|C5A210.1|RPOH_THEGJ RecName: Full=DNA-directed RNA polymerase subunit H
gi|239911538|gb|ACS34429.1| DNA-directed RNA polymerase subunit H (rpoH) [Thermococcus
gammatolerans EJ3]
Length = 82
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 41/72 (56%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 164
++ H L P+H+V++++EKE+LL++Y I QLP++ D G + G V+++
Sbjct: 8 SVFMHELVPEHRVISEEEKEELLRRYRIRLSQLPQIKASDPAVVELGAKPGDVIEIKRKS 67
Query: 165 EITESHVTYRCV 176
++ YR V
Sbjct: 68 PTAGVYLYYRLV 79
>gi|415681859|dbj|BAM66526.1| cytotoxin associated protein A, partial [Helicobacter pylori]
Length = 271
Score = 36.6 bits (83), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 10/71 (14%)
Query: 61 ALSEINLSVQDFRAIYGQDPDVDRLRIS---ISHQSDPSKRITDLLVNITKHVLKPKHQV 117
AL ++ S + FR Q R RI +SHQ+DPSK T + N +H+++P +
Sbjct: 55 ALIDVESSTESFRKFGDQ-----RYRIFTSWVSHQNDPSKINTRSIRNFMEHIIQPP--I 107
Query: 118 LTDQEKEKLLK 128
D+EK + LK
Sbjct: 108 PDDKEKAEFLK 118
>gi|448330658|ref|ZP_21519937.1| DNA-directed RNA polymerase subunit H [Natrinema versiforme JCM
10478]
gi|445611162|gb|ELY64922.1| DNA-directed RNA polymerase subunit H [Natrinema versiforme JCM
10478]
Length = 75
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V++++H L P+H VL ++ E++L++Y I+ LP++ + DA A E G V+K+
Sbjct: 1 MVDVSQHELVPEHTVLEEEALEEVLEEYDIDRTDLPKIKRTDA-ALPDDAELGDVIKIVR 59
Query: 163 SGEITESHVTYRCV 176
T+ V YR V
Sbjct: 60 DSRTTDQSVVYRYV 73
>gi|223478275|ref|YP_002582839.1| DNA-directed RNA polymerase subunit H [Thermococcus sp. AM4]
gi|214033501|gb|EEB74328.1| DNA-directed RNA polymerase subunit H [Thermococcus sp. AM4]
Length = 72
Score = 36.2 bits (82), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%)
Query: 109 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 168
H L P+H+V++++EKE+LL++Y I QLP++ D G + G V+++
Sbjct: 2 HELVPEHRVISEEEKEELLRRYRIRLSQLPQIKASDPAVVELGAKPGDVIEIKRKSPTAG 61
Query: 169 SHVTYRCV 176
++ YR V
Sbjct: 62 VYLYYRLV 69
>gi|374629646|ref|ZP_09702031.1| DNA-directed RNA polymerase, subunit H [Methanoplanus limicola DSM
2279]
gi|373907759|gb|EHQ35863.1| DNA-directed RNA polymerase, subunit H [Methanoplanus limicola DSM
2279]
Length = 91
Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKD 144
++ KHV+ P HQV++++E +L+ Y I QLP++ D
Sbjct: 6 SVLKHVMVPDHQVMSEEEVNELMSFYRITRDQLPKIYHDD 45
>gi|448350438|ref|ZP_21539251.1| DNA-directed RNA polymerase subunit H [Natrialba taiwanensis DSM
12281]
gi|448363839|ref|ZP_21552434.1| DNA-directed RNA polymerase subunit H [Natrialba asiatica DSM
12278]
gi|448366556|ref|ZP_21554679.1| DNA-directed RNA polymerase subunit H [Natrialba aegyptia DSM
13077]
gi|445636708|gb|ELY89868.1| DNA-directed RNA polymerase subunit H [Natrialba taiwanensis DSM
12281]
gi|445645423|gb|ELY98427.1| DNA-directed RNA polymerase subunit H [Natrialba asiatica DSM
12278]
gi|445654011|gb|ELZ06867.1| DNA-directed RNA polymerase subunit H [Natrialba aegyptia DSM
13077]
Length = 75
Score = 35.8 bits (81), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V++++H L P H +L ++ E++L +Y I+ LP++ + D A E G V+K+
Sbjct: 1 MVDVSQHELVPDHSILEEETLEEVLSEYDIDRTDLPKIKRTDP-AIPDEAELGDVIKIVR 59
Query: 163 SGEITESHVTYRCV 176
T+ V YR V
Sbjct: 60 DSRTTDQAVVYRLV 73
>gi|336253132|ref|YP_004596239.1| DNA-directed RNA polymerase subunit H [Halopiger xanaduensis SH-6]
gi|335337121|gb|AEH36360.1| DNA-directed RNA polymerase subunit H [Halopiger xanaduensis SH-6]
Length = 75
Score = 35.4 bits (80), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V++++H L P+H VL ++ E++L +Y I+ LP++ + D A E G V+K+
Sbjct: 1 MVDVSQHELVPEHTVLEEETLEEVLDEYDIDRTDLPKIKRNDP-ALPDEAEVGDVIKIVR 59
Query: 163 SGEITESHVTYRCV 176
T+ V YR V
Sbjct: 60 DSRTTDQAVVYRLV 73
>gi|284162086|ref|YP_003400709.1| RNA polymerase Rpb5 [Archaeoglobus profundus DSM 5631]
gi|284012083|gb|ADB58036.1| RNA polymerase Rpb5 [Archaeoglobus profundus DSM 5631]
Length = 96
Score = 35.4 bits (80), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 44/71 (61%)
Query: 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
+ + H+L PKH++L+++EKE++LK I+ +QLP++ D IA+ G + G +V++
Sbjct: 3 IRLQDHILVPKHELLSEEEKEEVLKLLGIKPEQLPKIRVDDPIAKEIGAKVGDIVRIIRE 62
Query: 164 GEITESHVTYR 174
+TYR
Sbjct: 63 SPTAGVSITYR 73
>gi|449299839|gb|EMC95852.1| hypothetical protein BAUCODRAFT_34618, partial [Baudoinia
compniacensis UAMH 10762]
Length = 171
Score = 35.4 bits (80), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVD-RLRISISH 91
D SR+ R + RT +M DRGY + E N+S DF+ Y + R R++ +
Sbjct: 4 DAASREQSRLWRILRTAKQMCYDRGYELTEDECNISFDDFKTQYCDESGAPQRTRMNFTA 63
Query: 92 QSDP 95
+ P
Sbjct: 64 RPTP 67
>gi|41615289|ref|NP_963787.1| DNA-directed RNA polymerase subunit H [Nanoarchaeum equitans
Kin4-M]
gi|40069013|gb|AAR39348.1| NEQ507 [Nanoarchaeum equitans Kin4-M]
Length = 91
Score = 35.4 bits (80), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 108 KHVLKPKHQVLTDQEKEKLLKKYSIEE-KQLPRMLKKDAIAQYYGLERGQVVKVTYSGEI 166
KH L P++Q LT +E EKLLK+ +I+ LP++ D Q+ + G V+++
Sbjct: 8 KHRLVPEYQKLTKEEVEKLLKELNIDSIDYLPKIYVDDPAIQHLNPKPGDVLRIIRKSPT 67
Query: 167 TESHVTYRCV 176
+ YR V
Sbjct: 68 AGKTIYYRVV 77
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.134 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,838,507,145
Number of Sequences: 23463169
Number of extensions: 111741472
Number of successful extensions: 275951
Number of sequences better than 100.0: 745
Number of HSP's better than 100.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 274784
Number of HSP's gapped (non-prelim): 1169
length of query: 177
length of database: 8,064,228,071
effective HSP length: 133
effective length of query: 44
effective length of database: 9,238,593,890
effective search space: 406498131160
effective search space used: 406498131160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 71 (32.0 bits)