BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030447
(177 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6CA26|RPAB1_YARLI DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=RPB5
PE=3 SV=1
Length = 212
Score = 86.7 bits (213), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 71/119 (59%)
Query: 56 RGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKH 115
R + + +SE + P +RL S++ + + + TDLLVNITKHVL P H
Sbjct: 91 RNFCIHISENKFATGILVYENNMTPSANRLIPSVAPATIDTFQETDLLVNITKHVLVPTH 150
Query: 116 QVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
L+ EK+ LL++Y ++E QLPR+ ++D +A+Y GL RGQ+VK+ E + + +YR
Sbjct: 151 IKLSGAEKKFLLERYRLKESQLPRIQREDPVARYLGLRRGQIVKIIRRSETSGRYASYR 209
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDF 72
S D+ + + RT E++KDRGY + E+NLS F
Sbjct: 2 SSDDAQKLWKVYRTAKELVKDRGYTITDKEVNLSFDQF 39
>sp|Q6BIJ0|RPAB1_DEBHA DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=RPB5 PE=3 SV=1
Length = 214
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 82/156 (52%), Gaps = 3/156 (1%)
Query: 19 YNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQ 78
+ PT L F D GS L + + R + + +SE N S F
Sbjct: 59 FQANPTAESLEKFPDLGS---LWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQSSI 115
Query: 79 DPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLP 138
P ++L ++S S + + DL+VNIT H L PKH L EK++LL++Y ++E QLP
Sbjct: 116 TPSANKLIPTVSPASIETFQEGDLVVNITHHDLVPKHIKLARDEKKELLERYRLKESQLP 175
Query: 139 RMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
R+ ++D + +Y GL+RG+VVK+ E + + +YR
Sbjct: 176 RIQREDPVGRYLGLKRGEVVKIIRRSETSGRYASYR 211
Score = 37.4 bits (85), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 32 VDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISH 91
+++ R R + S +TV EM++DRGY + EI++S+ +FR+ +V + ++ +
Sbjct: 1 MEDTDRTISRLWRSFKTVKEMVRDRGYYITQEEIDMSLAEFRSRICDSMNVPQRKL-MCF 59
Query: 92 QSDPS 96
Q++P+
Sbjct: 60 QANPT 64
>sp|Q757H7|RPAB1_ASHGO DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=RPB5 PE=3 SV=1
Length = 215
Score = 83.2 bits (204), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 70/119 (58%)
Query: 56 RGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKH 115
+ + + + E N F G P +L S++ + + T L+VNIT H L PKH
Sbjct: 94 KNFVIHIGEKNFQTGIFIYQNGITPSALKLLPSVAPATIETFNETALVVNITHHELVPKH 153
Query: 116 QVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
L+D+EK++LLK+Y ++E QLPR+ + D +A Y GL+RG+VVK+ E + + +YR
Sbjct: 154 IKLSDEEKKELLKRYRLKESQLPRIQRMDPVALYLGLKRGEVVKIIRKSETSGRYASYR 212
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQS 93
+ R+ R + + RTV EM++DRGY + E++LS++DF+A Y D R +S QS
Sbjct: 4 DNERNVSRLWRAFRTVKEMVRDRGYFITQEEVDLSLEDFKAKYC-DSMGRPQRKMMSFQS 62
Query: 94 DPSK 97
+P++
Sbjct: 63 NPTE 66
>sp|P20434|RPAB1_YEAST DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RPB5 PE=1 SV=1
Length = 215
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 3/157 (1%)
Query: 18 GYNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG 77
+ PTE +S F D GS L + + + + + + E N F
Sbjct: 59 SFQANPTEESISKFPDMGS---LWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNN 115
Query: 78 QDPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL 137
P +L SI + + L+VNIT H L PKH L+ EK +LLK+Y ++E QL
Sbjct: 116 ITPSAMKLVPSIPPATIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQL 175
Query: 138 PRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
PR+ + D +A Y GL+RG+VVK+ E + + +YR
Sbjct: 176 PRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYR 212
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPS 96
R+ R + + RTV EM+KDRGY + E+ L ++DF+A Y D R +S Q++P+
Sbjct: 7 RNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYC-DSMGRPQRKMMSFQANPT 65
Query: 97 K 97
+
Sbjct: 66 E 66
>sp|Q9P4B9|RPAB1_KLUMA DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Kluyveromyces marxianus GN=RPB5 PE=3 SV=1
Length = 215
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 80/157 (50%), Gaps = 3/157 (1%)
Query: 18 GYNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG 77
+ PTE + F + GS L + + + + V ++E N F G
Sbjct: 59 SFQSNPTEESIEKFPEMGS---LWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSG 115
Query: 78 QDPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL 137
P +++ + + + L+VNIT H L PKH L+D EK++LLK+Y ++E QL
Sbjct: 116 ITPSANKILPTAAPAVIETFPEASLVVNITHHELVPKHIRLSDAEKKELLKRYRLKESQL 175
Query: 138 PRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
PR+ + D +A Y GL+RG+V+K+ E + + +YR
Sbjct: 176 PRIQRMDPVALYLGLKRGEVIKIIRKSETSGRYASYR 212
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSK 97
R + + RTV EM++DRGY + EI+LS++DF+ Y D R +S QS+P++
Sbjct: 11 RLWRAFRTVKEMVRDRGYFITQEEIDLSLEDFKVKYC-DSMGKPQRKMMSFQSNPTE 66
>sp|Q54EH2|RPAB1_DICDI DNA-directed RNA polymerases I, II, and III subunit rpabc1
OS=Dictyostelium discoideum GN=polr2e PE=3 SV=2
Length = 197
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LLVNIT H L PKH +LT +EK +LL +Y ++E QLPR+ D +A+YYGL RG VVK+
Sbjct: 121 ELLVNITHHQLVPKHILLTKEEKLELLTRYKMKESQLPRIQTNDPVARYYGLSRGHVVKI 180
Query: 161 TYSGEITESHVTYR-CV 176
E ++TYR CV
Sbjct: 181 VRPSETAGRYITYRLCV 197
>sp|A8XGH1|RPAB1_CAEBR DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Caenorhabditis briggsae GN=rpb-5 PE=3 SV=1
Length = 211
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 55/77 (71%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+L+VNIT+H L P+H V+T +EK +LL +Y +++ QLPR+ + D +A+Y+GL RGQVVK
Sbjct: 134 AELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRGQVVK 193
Query: 160 VTYSGEITESHVTYRCV 176
+ E ++TYR V
Sbjct: 194 IIRPSETAGRYITYRLV 210
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ R + R+TVL+M+ DRGY VA E++ ++ F+ +G P + L I ++H
Sbjct: 7 ETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLETFKETFGDRPSEKKPARSDLTILVAHN 66
Query: 93 SDPSKRITDLLVNITK 108
DP+ ++ TK
Sbjct: 67 DDPADQMFVFFPEDTK 82
>sp|Q9N5K2|RPAB1_CAEEL DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Caenorhabditis elegans GN=rpb-5 PE=3 SV=1
Length = 211
Score = 80.5 bits (197), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 55/77 (71%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+L+VNIT+H L P+H V+T +EK +LL +Y +++ QLPR+ + D +A+Y+GL RGQVVK
Sbjct: 134 AELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRGQVVK 193
Query: 160 VTYSGEITESHVTYRCV 176
+ E ++TYR V
Sbjct: 194 IIRPSETAGRYITYRLV 210
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ R + R+TVL+M+ DRGY VA E++ ++ F+ YG P + L I ++H
Sbjct: 7 ETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLTILVAHN 66
Query: 93 SDPSKRI 99
DP+ ++
Sbjct: 67 DDPADQM 73
>sp|Q6CJ62|RPAB1_KLULA DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RPB5 PE=3
SV=1
Length = 215
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 80/157 (50%), Gaps = 3/157 (1%)
Query: 18 GYNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG 77
+ PTE + F + GS L + + + + V ++E N F G
Sbjct: 59 SFQSNPTEESIEKFPEMGS---LWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSG 115
Query: 78 QDPDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL 137
P +++ + + + L+VNIT H L PKH L++ EK++LLK+Y ++E QL
Sbjct: 116 ITPSANKILPTAAPAVIETFPEASLVVNITHHELVPKHIRLSEAEKKELLKRYRLKESQL 175
Query: 138 PRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
PR+ + D +A Y GL+RG+V+K+ E + + +YR
Sbjct: 176 PRIQRMDPVALYLGLKRGEVIKIIRKSETSGRYASYR 212
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPS 96
R+ R + + +TV EM++DRGY + EI+LS++DF+A Y D R +S QS+P+
Sbjct: 7 RNISRLWRAFKTVKEMVRDRGYFITQEEIDLSLEDFKAKYC-DSMGKPQRKMMSFQSNPT 65
Query: 97 K 97
+
Sbjct: 66 E 66
>sp|Q2T9T3|RPAB1_BOVIN DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Bos
taurus GN=POLR2E PE=2 SV=1
Length = 210
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 90/179 (50%), Gaps = 7/179 (3%)
Query: 5 NGYDSSME----MEGGNGYNGEPTESCLSGFV--DNGSRDSLRYYLSRRTVLEMLKDRGY 58
+G D ++E GG G P + L+ V ++ D + + + + + Y
Sbjct: 31 DGLDQTLEEFKAQFGGKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVY 90
Query: 59 AVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIT-DLLVNITKHVLKPKHQV 117
+ E N++ G P + + ++ + + + +LL+NIT+H L P+H V
Sbjct: 91 CQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVV 150
Query: 118 LTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 176
+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQVVK+ E ++TYR V
Sbjct: 151 MTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 209
>sp|Q5R587|RPAB1_PONAB DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo
abelii GN=POLR2E PE=2 SV=1
Length = 210
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQVVK+
Sbjct: 134 ELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKI 193
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 194 IRPSETAGRYITYRLV 209
>sp|B0BNE2|RPAB1_RAT DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Rattus norvegicus GN=Polr2e PE=2 SV=1
Length = 210
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQVVK+
Sbjct: 134 ELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYFGIKRGQVVKI 193
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 194 IRPSETAGRYITYRLV 209
>sp|Q80UW8|RPAB1_MOUSE DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus
musculus GN=Polr2e PE=2 SV=1
Length = 210
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQVVK+
Sbjct: 134 ELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYFGIKRGQVVKI 193
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 194 IRPSETAGRYITYRLV 209
>sp|P19388|RPAB1_HUMAN DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Homo
sapiens GN=POLR2E PE=1 SV=4
Length = 210
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQVVK+
Sbjct: 134 ELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKI 193
Query: 161 TYSGEITESHVTYRCV 176
E ++TYR V
Sbjct: 194 IRPSETAGRYITYRLV 209
>sp|Q6FQA6|RPAB1_CANGA DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=RPB5 PE=3 SV=1
Length = 215
Score = 77.4 bits (189), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 79/159 (49%), Gaps = 7/159 (4%)
Query: 18 GYNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG 77
+ PTE ++ F D G+ L + + + + + + E F IY
Sbjct: 59 SFQANPTEESMTKFPDMGT---LWVEFCDEPSVGVKTMKTFVIHIQEKQFQTGIF--IYQ 113
Query: 78 QD--PDVDRLRISISHQSDPSKRITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEK 135
+ P +L SI + + L+VNIT H L PKH L ++EK +LLK+Y ++E
Sbjct: 114 NNITPSAMKLVPSIPPATIETFHEAALVVNITHHDLVPKHIRLNEEEKAELLKRYRLKES 173
Query: 136 QLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174
QLPR+ + D +A Y GL+RG+VVK+ E + +YR
Sbjct: 174 QLPRIQRADPVALYLGLKRGEVVKIIRKSETAGRYASYR 212
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSK 97
R + + RTV EM++DRGY +A E++L+++DF+ Y D R +S Q++P++
Sbjct: 11 RLWRTFRTVKEMVRDRGYFIAQEELDLTLEDFKVKYC-DSMGRAQRKMMSFQANPTE 66
>sp|Q09191|RPAB1_SCHPO DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpb5 PE=1 SV=1
Length = 210
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 52/75 (69%)
Query: 100 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 159
+DL+VNIT H L PKH +L+ EK++LL +Y + E QLPR+ D +A+Y GL+RG+VVK
Sbjct: 133 SDLIVNITHHELVPKHILLSPDEKKELLDRYKLRETQLPRIQLADPVARYLGLKRGEVVK 192
Query: 160 VTYSGEITESHVTYR 174
+ E + + +YR
Sbjct: 193 IVRRSETSGRYNSYR 207
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY-GQDPDVDRLRISI 89
++ +R + + +T +++ DRGY V+ +E++L++ F+A++ G ++DR +S
Sbjct: 6 KNIVRVFRAWKTAHQLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLSF 59
>sp|Q58443|RPOH_METJA DNA-directed RNA polymerase subunit H OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoH PE=1 SV=1
Length = 78
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 164
+T H+L PKH+++ +E E++LK+Y+I+ +QLP++ + D + Q G + G VV+V
Sbjct: 2 KVTDHILVPKHEIVPKEEVEEILKRYNIKIQQLPKIYEDDPVIQEIGAKEGDVVRVIRKS 61
Query: 165 EITESHVTYRCV 176
+ YR V
Sbjct: 62 PTAGVSIAYRLV 73
>sp|P11521|RPOH_SULAC DNA-directed RNA polymerase subunit H OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoH PE=1 SV=2
Length = 84
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%)
Query: 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
++I+ H L PKH++L +E KL+K+ I+ +QLP + D +A+ G + G ++K+T
Sbjct: 9 IDISNHELVPKHEILQLEEAYKLVKELGIKPEQLPWIRASDPVAKSIGAKPGDIIKITRK 68
Query: 164 GEITESHVTYRCV 176
T VTYR V
Sbjct: 69 SPFTGESVTYRYV 81
>sp|O27122|RPOH_METTH DNA-directed RNA polymerase subunit H OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoH PE=1 SV=1
Length = 77
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 106 ITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGE 165
I KH L P+H +L + E +++LK+ +QLP++ D +A+ G +RG +VK+
Sbjct: 5 ILKHQLVPEHVILNESEAKRVLKELDAHPEQLPKIKTTDPVAKAIGAKRGDIVKIIRKSP 64
Query: 166 ITESHVTYRCV 176
E VTYR V
Sbjct: 65 TAEEFVTYRLV 75
>sp|O28394|RPOH_ARCFU DNA-directed RNA polymerase subunit H OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rpoH PE=3 SV=1
Length = 76
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%)
Query: 109 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 168
H+L PKH+VL+ +E E+LLK I ++QLP++ D IA+ G + G +VK+T
Sbjct: 8 HMLVPKHEVLSKEEAEELLKILGIGKEQLPKIKADDPIAKEIGAKPGDIVKITRKSLTAG 67
Query: 169 SHVTYRCV 176
V YR V
Sbjct: 68 ESVFYRLV 75
>sp|Q976A3|RPOH_SULTO DNA-directed RNA polymerase subunit H OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rpoH
PE=3 SV=2
Length = 84
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 45/73 (61%)
Query: 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
++ ++H L PKH+VL+ +E K+LK+ I+ +QLP + D IA+ G + G ++K+T
Sbjct: 9 IDPSQHELVPKHEVLSIEEAYKILKELGIKPEQLPWIRASDPIAKLVGAKPGDIIKITRK 68
Query: 164 GEITESHVTYRCV 176
++ V YR V
Sbjct: 69 SSLSGEVVVYRYV 81
>sp|A4YCQ7|RPOH_METS5 DNA-directed RNA polymerase subunit H OS=Metallosphaera sedula
(strain ATCC 51363 / DSM 5348) GN=rpoH PE=3 SV=1
Length = 83
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%)
Query: 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
++ + HVL PKH+VL+ +E K+LK+ I +QLP M D +A+ + G +VK+T
Sbjct: 8 IDPSVHVLVPKHEVLSVEEAFKVLKELGIGPEQLPWMRASDPMARTINAKPGDIVKITRK 67
Query: 164 GEITESHVTYRCV 176
I V YR V
Sbjct: 68 SPIVGELVVYRYV 80
>sp|O74019|RPOH_PYRHO DNA-directed RNA polymerase subunit H OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=rpoH PE=3 SV=1
Length = 82
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
NI KHVL P+H++L+++EK+ LL+KY I QLP++ D + G + G ++++
Sbjct: 8 NIFKHVLVPEHRILSEEEKKALLEKYKITPAQLPQIRASDPAVKALGAKPGDIIEI 63
>sp|Q9V116|RPOH_PYRAB DNA-directed RNA polymerase subunit H OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=rpoH PE=3 SV=1
Length = 82
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
NI KHVL P+H++L+++EK+ LL+KY I QLP++ D + G + G ++++
Sbjct: 8 NIFKHVLVPEHRILSEEEKKALLEKYRITPAQLPQIKASDPAVKALGAKPGDIIEI 63
>sp|C6A1F8|RPOH_THESM DNA-directed RNA polymerase subunit H OS=Thermococcus sibiricus
(strain MM 739 / DSM 12597) GN=rpoH PE=3 SV=1
Length = 82
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
+ I HVL P+H+VL+ +E E+LLKKY+I+ QLP++ D Q + G ++++
Sbjct: 7 LTIFDHVLVPEHRVLSKEETEELLKKYNIKPSQLPQIKTSDPAVQALDAKPGDIIEIKRK 66
Query: 164 GEITESHVTYRCV 176
+ YR V
Sbjct: 67 SPTAGVYYYYRIV 79
>sp|A6UV53|RPOH_META3 DNA-directed RNA polymerase subunit H OS=Methanococcus aeolicus
(strain Nankai-3 / ATCC BAA-1280) GN=rpoH PE=3 SV=1
Length = 78
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 113 PKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVT 172
PKH+V++ +E +KLL KY I+ +QLP++ D + + G + G VVK++ T H T
Sbjct: 10 PKHEVISKEEVQKLLAKYDIKIQQLPKIFDIDPVIEEIGAKPGDVVKISRDSP-TSGHAT 68
Query: 173 Y 173
Y
Sbjct: 69 Y 69
>sp|Q2NEK1|RPOH_METST DNA-directed RNA polymerase subunit H OS=Methanosphaera stadtmanae
(strain DSM 3091) GN=rpoH PE=3 SV=1
Length = 77
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 41/72 (56%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 164
+I +H L P+H +L+++E +K+L ++ Q+P++L D + + + G ++K+T
Sbjct: 4 DILQHKLVPEHTILSEEEAQKVLDDLNVRLDQIPKILPTDPVVKAIDAKVGDILKITRKS 63
Query: 165 EITESHVTYRCV 176
E V YR V
Sbjct: 64 ETAGIFVAYRVV 75
>sp|P61519|RPOH_METMP DNA-directed RNA polymerase subunit H OS=Methanococcus maripaludis
(strain S2 / LL) GN=rpoH PE=3 SV=1
Length = 78
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%)
Query: 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
+ I+ H + P H+++ +E LL+KYSI+ +Q P++L D + G G VVK+T
Sbjct: 1 MKISSHEMVPTHEIIPREEIPLLLEKYSIKMQQFPKLLDTDPLVLEIGATPGDVVKITRM 60
Query: 164 GEITESHVTYRCV 176
YR V
Sbjct: 61 SPTAGESTYYRLV 73
>sp|Q8U0M2|RPOH_PYRFU DNA-directed RNA polymerase subunit H OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpoH
PE=3 SV=1
Length = 82
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 37/56 (66%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
+I HVL P+H+VL+++EK+ LL+KY I QLP++ D + G + G V+++
Sbjct: 8 SIFDHVLVPEHRVLSEEEKKALLEKYKITLAQLPQIKASDPAVKALGAKPGDVIEI 63
>sp|A2SSM7|RPOH_METLZ DNA-directed RNA polymerase subunit H OS=Methanocorpusculum
labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpoH
PE=3 SV=1
Length = 82
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
+N+ H + P HQ++TD++ + LL + I E LP++ D + G + G V+ +
Sbjct: 4 LNVLLHEMVPDHQIMTDEDVKNLLTTFDITEDHLPKIYHDDPAVKACGAKPGNVIMIVRK 63
Query: 164 GEITESHVTYRCV 176
+ +YR V
Sbjct: 64 SQTAGEATSYRLV 76
>sp|A0B555|RPOH_METTP DNA-directed RNA polymerase subunit H OS=Methanosaeta thermophila
(strain DSM 6194 / PT) GN=rpoH PE=3 SV=1
Length = 78
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 39/68 (57%)
Query: 109 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 168
H L P+H +LT +E +++L +Y +E + LP++ D +A+ G + G ++K+ +
Sbjct: 9 HELVPEHILLTPEEAQQVLMQYGVEARHLPKIHVTDPVAKEIGAKVGDIIKIKRKSPTAK 68
Query: 169 SHVTYRCV 176
+ YR V
Sbjct: 69 ESIFYRLV 76
>sp|C3N7P8|RPOH_SULIY DNA-directed RNA polymerase subunit H OS=Sulfolobus islandicus
(strain Y.G.57.14 / Yellowstone #1) GN=rpoH PE=3 SV=1
Length = 84
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 109 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 168
H L PKH+VL+ E K+LK+ I +QLP + D +A+ + G ++++ ++
Sbjct: 14 HYLVPKHEVLSIDEAYKILKELGIRPEQLPWIRASDPVARSINAKPGDIIRIIRKSQLYG 73
Query: 169 SHVTYRCV 176
V+YR V
Sbjct: 74 EVVSYRYV 81
>sp|C3NFS5|RPOH_SULIN DNA-directed RNA polymerase subunit H OS=Sulfolobus islandicus
(strain Y.N.15.51 / Yellowstone #2) GN=rpoH PE=3 SV=1
Length = 84
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 109 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 168
H L PKH+VL+ E K+LK+ I +QLP + D +A+ + G ++++ ++
Sbjct: 14 HYLVPKHEVLSIDEAYKILKELGIRPEQLPWIRASDPVARSINAKPGDIIRIIRKSQLYG 73
Query: 169 SHVTYRCV 176
V+YR V
Sbjct: 74 EVVSYRYV 81
>sp|C3MY97|RPOH_SULIM DNA-directed RNA polymerase subunit H OS=Sulfolobus islandicus
(strain M.14.25 / Kamchatka #1) GN=rpoH PE=3 SV=1
Length = 84
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 109 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 168
H L PKH+VL+ E K+LK+ I +QLP + D +A+ + G ++++ ++
Sbjct: 14 HYLVPKHEVLSIDEAYKILKELGIRPEQLPWIRASDPVARSINAKPGDIIRIIRKSQLYG 73
Query: 169 SHVTYRCV 176
V+YR V
Sbjct: 74 EVVSYRYV 81
>sp|C3MRK1|RPOH_SULIL DNA-directed RNA polymerase subunit H OS=Sulfolobus islandicus
(strain L.S.2.15 / Lassen #1) GN=rpoH PE=3 SV=1
Length = 84
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 109 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 168
H L PKH+VL+ E K+LK+ I +QLP + D +A+ + G ++++ ++
Sbjct: 14 HYLVPKHEVLSIDEAYKILKELGIRPEQLPWIRASDPVARSINAKPGDIIRIIRKSQLYG 73
Query: 169 SHVTYRCV 176
V+YR V
Sbjct: 74 EVVSYRYV 81
>sp|C4KIV6|RPOH_SULIK DNA-directed RNA polymerase subunit H OS=Sulfolobus islandicus
(strain M.16.4 / Kamchatka #3) GN=rpoH PE=3 SV=1
Length = 84
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 109 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 168
H L PKH+VL+ E K+LK+ I +QLP + D +A+ + G ++++ ++
Sbjct: 14 HYLVPKHEVLSIDEAYKILKELGIRPEQLPWIRASDPVARSINAKPGDIIRIIRKSQLYG 73
Query: 169 SHVTYRCV 176
V+YR V
Sbjct: 74 EVVSYRYV 81
>sp|C3MZM6|RPOH_SULIA DNA-directed RNA polymerase subunit H OS=Sulfolobus islandicus
(strain M.16.27) GN=rpoH PE=3 SV=1
Length = 84
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 109 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 168
H L PKH+VL+ E K+LK+ I +QLP + D +A+ + G ++++ ++
Sbjct: 14 HYLVPKHEVLSIDEAYKILKELGIRPEQLPWIRASDPVARSINAKPGDIIRIIRKSQLYG 73
Query: 169 SHVTYRCV 176
V+YR V
Sbjct: 74 EVVSYRYV 81
>sp|P41559|RPOH_METVS DNA-directed RNA polymerase subunit H OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rpoH PE=3 SV=1
Length = 78
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%)
Query: 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
+ ++ H + P+H+++ E LL+KY I+ +Q P++L D + G + G +VK+T
Sbjct: 1 MKVSSHEMVPEHEIIPGDEIPFLLEKYGIKIQQFPKLLISDPLVIEVGAKVGDIVKITRK 60
Query: 164 GEITESHVTYRCV 176
+ V +R V
Sbjct: 61 SQTAGETVYFRLV 73
>sp|Q980Q9|RPOH_SULSO DNA-directed RNA polymerase subunit H OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rpoH
PE=1 SV=1
Length = 84
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 109 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 168
H L PKH+VL E K+LK+ I +QLP + D +A+ + G ++++ ++
Sbjct: 14 HYLVPKHEVLNIDEAYKILKELGIRPEQLPWIRASDPVARSINAKPGDIIRIIRKSQLYG 73
Query: 169 SHVTYRCV 176
V+YR V
Sbjct: 74 EVVSYRYV 81
>sp|Q12WS3|RPOH_METBU DNA-directed RNA polymerase subunit H OS=Methanococcoides burtonii
(strain DSM 6242) GN=rpoH PE=3 SV=1
Length = 78
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 164
++ H L P H+++ + + + +L Y++E +QLP++ D IA G E G VVKV
Sbjct: 5 SLLDHELIPHHEIMDEDDLKTVLTHYNVEREQLPKLKVTDPIALEIGAEPGDVVKVIRKS 64
Query: 165 EITESHVTYRCV 176
+ + YR V
Sbjct: 65 QTAGEALYYRYV 76
>sp|Q464Y4|RPOH_METBF DNA-directed RNA polymerase subunit H OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=rpoH PE=3 SV=1
Length = 78
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 113 PKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVT 172
PKH+++ + E + +L KYSIE++QLP++ D + + G G VVK+T +
Sbjct: 13 PKHEIMPEGELKSVLSKYSIEKEQLPKIKVHDPVCKEIGAVVGDVVKITRISQTAGEAEY 72
Query: 173 YRCV 176
YR V
Sbjct: 73 YRLV 76
>sp|Q8PUQ8|RPOH_METMA DNA-directed RNA polymerase subunit H OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=rpoH PE=3 SV=1
Length = 78
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 109 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 168
H PKH+++++ E + +L KY IE++QLP++ +D + + G G VVK+T +
Sbjct: 9 HEAVPKHEIMSEGELKSVLSKYFIEKEQLPKIKVQDPVCKEIGAVVGDVVKITRKSQTAG 68
Query: 169 SHVTYRCV 176
YR V
Sbjct: 69 EADYYRLV 76
>sp|P0CX06|RPOH_HALSA DNA-directed RNA polymerase subunit H OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpoH PE=3
SV=1
Length = 75
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V++++H L P+H VL ++ + +L Y I+ +LP++ KD A E G VV++
Sbjct: 1 MVDVSQHELVPEHTVLDEETLDGVLADYDIDRTELPKIKYKDP-ALPDNAEIGDVVEIVR 59
Query: 163 SGEITESHVTYRCV 176
T+ V YR V
Sbjct: 60 DSRTTDEAVVYRLV 73
>sp|B0R8D7|RPOH_HALS3 DNA-directed RNA polymerase subunit H OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rpoH PE=3 SV=1
Length = 75
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 103 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162
+V++++H L P+H VL ++ + +L Y I+ +LP++ KD A E G VV++
Sbjct: 1 MVDVSQHELVPEHTVLDEETLDGVLADYDIDRTELPKIKYKDP-ALPDNAEIGDVVEIVR 59
Query: 163 SGEITESHVTYRCV 176
T+ V YR V
Sbjct: 60 DSRTTDEAVVYRLV 73
>sp|Q91F72|454R_IIV6 Putative DNA-directed RNA polymerase subunit 454R OS=Invertebrate
iridescent virus 6 GN=IIV6-454R PE=3 SV=1
Length = 184
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 13/85 (15%)
Query: 101 DLLVNITKHVLKPKHQVLTDQEKEKLLKKY---------SIEEKQLPRMLKKDAIAQYYG 151
DL +NITK+ L+P L D+E + KKY I + P M K D IA+++
Sbjct: 103 DLQMNITKYHLQPLFNKLLDEEAKDFKKKYIKCKIENGKKIILQSFPSMSKSDPIARFFK 162
Query: 152 LERGQVVKVTYSGEITESHVTYRCV 176
+ G V+K+T + V+YR V
Sbjct: 163 YQSGDVIKITNK----DGFVSYRIV 183
>sp|A2BN32|RPOH_HYPBU DNA-directed RNA polymerase subunit H OS=Hyperthermus butylicus
(strain DSM 5456 / JCM 9403) GN=rpoH PE=3 SV=1
Length = 83
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 35/56 (62%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 160
NI +H L PKH+V+ +E +++++ + +QLP + D +A+ G + G +V++
Sbjct: 9 NILEHELVPKHEVVPPEEAARIIRELGVRPEQLPWLRATDPVARAIGAKPGDIVRI 64
>sp|A6VGU6|RPOH_METM7 DNA-directed RNA polymerase subunit H OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=rpoH PE=3 SV=1
Length = 78
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%)
Query: 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 163
+ ++ H + P H+++ +E LL+KY+I+ +QLP++L D + G V+K+T
Sbjct: 1 MKVSSHAMVPTHEIIPREEIPLLLEKYNIKLQQLPKLLDTDPLVLEVEAAPGDVLKITRM 60
Query: 164 GEITESHVTYRCV 176
YR V
Sbjct: 61 SPTAGESTYYRLV 73
>sp|A3DMP2|RPOH_STAMF DNA-directed RNA polymerase subunit H OS=Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1) GN=rpoH PE=3 SV=1
Length = 91
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%)
Query: 105 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 164
NI +H L PKH+VL+ +E +LL+K I+ QLP + D + + + G ++++
Sbjct: 7 NILEHELVPKHEVLSVREAAELLRKLKIKPAQLPWISIDDPVVKAIKAKPGDIIRIIRKS 66
Query: 165 EITESHVTYRCV 176
+ YR V
Sbjct: 67 PTAGEAIAYRYV 78
>sp|Q8TRB4|RPOH_METAC DNA-directed RNA polymerase subunit H OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rpoH
PE=3 SV=1
Length = 78
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 39/64 (60%)
Query: 113 PKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVT 172
PKH+++++ E + +L KY IE++QLP++ +D +++ G G VV++T +
Sbjct: 13 PKHEIISEGELKSVLSKYLIEKEQLPKIKVQDPVSKEIGAVVGDVVRITRKSQTAGEADY 72
Query: 173 YRCV 176
YR V
Sbjct: 73 YRLV 76
>sp|A9A458|RPOH_NITMS DNA-directed RNA polymerase subunit H OS=Nitrosopumilus maritimus
(strain SCM1) GN=rpoH PE=3 SV=1
Length = 83
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%)
Query: 106 ITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGE 165
+ H+ PKH++++ E E++LKKY+ + +LP + D G++ G ++K+T
Sbjct: 10 VPDHIYVPKHEIISKTEAEEVLKKYNCKPTELPLIFVNDPAILGLGVKPGDMIKITRKSP 69
Query: 166 ITESHVTYRCV 176
+ YR V
Sbjct: 70 TAGEGLYYRYV 80
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.134 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,409,831
Number of Sequences: 539616
Number of extensions: 2728818
Number of successful extensions: 8091
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 8000
Number of HSP's gapped (non-prelim): 122
length of query: 177
length of database: 191,569,459
effective HSP length: 110
effective length of query: 67
effective length of database: 132,211,699
effective search space: 8858183833
effective search space used: 8858183833
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)