Query 030447
Match_columns 177
No_of_seqs 161 out of 335
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 22:35:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030447.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030447hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h0g_E DNA-directed RNA polyme 100.0 5.4E-62 1.8E-66 408.4 10.1 146 32-177 1-210 (210)
2 1dzf_A DNA-directed RNA polyme 100.0 1.1E-60 3.7E-65 401.8 11.0 143 35-177 5-215 (215)
3 1eik_A RNA polymerase subunit 100.0 2.8E-42 9.5E-47 250.9 7.3 76 102-177 1-76 (77)
4 1hmj_A RPB5, protein (subunit 100.0 4.8E-41 1.6E-45 245.0 7.1 74 104-177 1-74 (78)
5 4ayb_H DNA-directed RNA polyme 100.0 1.4E-39 4.7E-44 239.6 6.8 79 99-177 4-82 (84)
6 1ug1_A KIAA1010 protein; struc 77.1 2.3 7.8E-05 31.5 3.6 50 119-170 3-54 (92)
7 3e19_A FEOA; transcriptional r 61.2 9 0.00031 25.6 3.7 23 150-174 34-56 (77)
8 2pn0_A Prokaryotic transcripti 60.7 8.6 0.00029 29.2 3.9 36 138-176 89-125 (141)
9 3bmb_A Regulator of nucleoside 59.3 9.6 0.00033 28.7 3.9 35 139-176 87-122 (136)
10 2p4v_A Transcription elongatio 57.7 14 0.00047 28.7 4.6 34 139-176 117-151 (158)
11 2k4y_A FEOA-like protein; GFT 56.0 12 0.00043 25.7 3.8 35 139-174 20-57 (86)
12 2k5l_A FEOA; structure, NESG, 55.9 13 0.00045 25.2 3.8 35 139-174 17-54 (81)
13 3mhx_A Putative ferrous iron t 54.2 17 0.0006 24.7 4.2 31 144-174 25-58 (85)
14 2f23_A Anti-cleavage anti-GREA 52.8 15 0.00051 28.2 4.1 35 138-176 117-152 (156)
15 2h3j_A Hypothetical protein PA 47.5 19 0.00064 23.5 3.4 21 149-169 29-49 (75)
16 2gcx_A FEOA, ferrous iron tran 47.3 16 0.00054 24.1 3.1 25 149-174 28-52 (75)
17 3idw_A Actin cytoskeleton-regu 45.8 0.9 3.1E-05 32.4 -3.6 37 124-162 23-59 (72)
18 1vki_A Hypothetical protein AT 42.2 17 0.00058 28.2 2.9 47 114-160 15-63 (181)
19 3rnj_A Brain-specific angiogen 37.7 15 0.00052 23.4 1.7 16 149-164 24-39 (67)
20 1k1z_A VAV; SH3, proto-oncogen 37.6 23 0.00078 23.3 2.6 17 148-164 33-49 (78)
21 2yuj_A Ubiquitin fusion degrad 36.8 33 0.0011 27.9 3.9 35 140-174 89-123 (190)
22 3o27_A Putative uncharacterize 36.4 24 0.00082 24.8 2.6 19 145-163 32-50 (68)
23 2lx9_A Ferrous iron transport 36.4 29 0.001 23.9 3.1 24 150-174 29-52 (83)
24 2v1q_A SLA1, cytoskeleton asse 36.1 26 0.00088 21.6 2.6 16 149-164 18-33 (60)
25 1gcq_C VAV proto-oncogene; SH3 36.0 25 0.00086 22.5 2.6 16 149-164 26-41 (70)
26 1zc1_A Ubiquitin fusion degrad 35.4 30 0.001 28.6 3.5 31 144-174 98-128 (208)
27 1mfg_A ERB-B2 interacting prot 35.0 16 0.00054 24.5 1.5 20 140-161 42-61 (95)
28 2a28_A BZZ1 protein; SH3 domai 34.5 29 0.001 21.0 2.6 17 149-165 16-32 (54)
29 1vjf_A DNA-binding protein, pu 34.4 15 0.00051 28.5 1.5 47 114-160 10-58 (180)
30 2ogg_A Trehalose operon transc 33.8 22 0.00074 25.4 2.2 24 140-163 19-43 (152)
31 1grj_A GREA protein; transcrip 33.5 16 0.00053 28.3 1.4 27 139-165 119-146 (158)
32 1g2b_A Spectrin alpha chain; c 33.2 26 0.00089 22.0 2.2 16 149-164 37-52 (62)
33 2l66_A SSO7C4, transcriptional 32.8 28 0.00096 22.0 2.3 20 144-163 18-37 (53)
34 1n7t_A 99-MER peptide of densi 32.5 20 0.0007 24.4 1.8 20 139-160 49-68 (103)
35 2bz8_A SH3-domain kinase bindi 32.0 28 0.00096 21.4 2.2 16 149-164 17-32 (58)
36 1fx7_A Iron-dependent represso 32.0 33 0.0011 27.0 3.2 29 143-174 177-208 (230)
37 1ri9_A FYN-binding protein; SH 31.9 50 0.0017 24.6 3.9 53 114-166 14-74 (102)
38 2j6f_A CD2-associated protein; 31.7 30 0.001 21.7 2.4 16 149-164 17-32 (62)
39 1wjn_A Tubulin-folding protein 31.7 35 0.0012 23.5 2.9 22 147-168 76-97 (97)
40 1cka_A C-CRK N-terminal SH3 do 31.6 29 0.00097 21.3 2.2 17 149-165 17-33 (57)
41 2jt4_A Cytoskeleton assembly c 31.5 33 0.0011 21.9 2.6 16 149-164 22-37 (71)
42 2kjp_A Uncharacterized protein 31.3 19 0.00065 24.7 1.4 20 140-161 8-27 (91)
43 1zuu_A BZZ1 protein; SH3 domai 31.0 30 0.001 21.2 2.2 17 149-165 17-33 (58)
44 1jo8_A ABP1P, actin binding pr 30.8 30 0.001 21.3 2.2 16 149-164 16-31 (58)
45 3cnv_A Putative GNTR-family tr 30.7 24 0.00083 25.2 2.0 24 140-163 29-53 (162)
46 1zuy_A Myosin-5 isoform; SH3 d 30.7 27 0.00094 21.3 2.0 18 148-165 16-33 (58)
47 2eyx_A V-CRK sarcoma virus CT1 30.5 22 0.00075 22.8 1.6 16 149-164 24-39 (67)
48 2kl1_A YLBL protein; structure 30.4 21 0.00072 24.4 1.5 21 140-162 12-32 (94)
49 3eg3_A Proto-oncogene tyrosine 29.9 34 0.0012 21.1 2.4 16 149-164 21-36 (63)
50 3i18_A LMO2051 protein; alpha- 29.7 28 0.00095 23.9 2.1 20 140-161 14-33 (100)
51 2k5f_A Ferrous iron transport 29.0 45 0.0015 24.1 3.2 25 149-174 29-53 (105)
52 4e6r_A Cytoplasmic protein NCK 28.9 29 0.00099 21.1 1.9 16 149-164 17-32 (58)
53 4a8j_B Elongator complex prote 28.9 91 0.0031 26.9 5.5 41 117-177 178-222 (270)
54 1sem_A SEM-5; SRC-homology 3 ( 28.8 34 0.0012 20.9 2.2 16 149-164 18-33 (58)
55 2x3w_D Syndapin I, protein kin 28.6 30 0.001 21.3 1.9 16 149-164 19-34 (60)
56 2ebp_A SAM and SH3 domain-cont 28.6 33 0.0011 22.5 2.2 17 148-164 26-42 (73)
57 1b07_A Protein (proto-oncogene 28.5 33 0.0011 22.0 2.2 17 149-165 19-35 (65)
58 2ffj_A Conserved hypothetical 28.4 19 0.00066 30.5 1.3 21 140-160 277-297 (300)
59 2lx7_A GAS-7, growth arrest-sp 28.2 22 0.00075 23.2 1.2 17 149-165 20-36 (60)
60 3ngp_A Spectrin alpha chain, b 28.0 34 0.0012 21.0 2.1 17 148-164 21-37 (62)
61 3ulr_B SRC substrate cortactin 28.0 34 0.0012 21.3 2.1 16 149-164 25-40 (65)
62 1tuc_A Alpha-spectrin; capping 27.9 36 0.0012 21.6 2.2 17 149-165 5-21 (63)
63 3ddv_A Transcriptional regulat 27.9 32 0.0011 24.6 2.2 25 139-163 15-40 (145)
64 1yx5_B Ubiquitin; proteasome, 27.8 93 0.0032 21.0 4.5 53 123-176 27-84 (98)
65 2vwf_A Growth factor receptor- 27.8 37 0.0013 20.7 2.2 16 149-164 18-33 (58)
66 2g6f_X RHO guanine nucleotide 27.7 33 0.0011 21.2 2.0 18 148-165 19-36 (59)
67 2bzy_A CRK-like protein, CRKL 27.5 33 0.0011 21.9 2.0 17 148-164 18-34 (67)
68 2fpe_A C-JUN-amino-terminal ki 27.5 33 0.0011 21.4 2.0 16 149-164 19-34 (62)
69 2z0x_A Putative uncharacterize 27.0 29 0.00099 25.7 1.9 43 118-160 5-51 (158)
70 2enm_A Sorting nexin-9; SH3-li 26.9 50 0.0017 21.4 2.9 16 149-164 26-41 (77)
71 1y0m_A 1-phosphatidylinositol- 26.8 39 0.0013 21.0 2.2 16 149-164 19-34 (61)
72 3ic8_A Uncharacterized GST-lik 26.8 1E+02 0.0036 24.6 5.3 46 113-164 221-266 (310)
73 2g8l_A 287AA long hypothetical 26.8 30 0.001 29.4 2.2 24 140-163 273-296 (299)
74 1uti_A GRB2-related adaptor pr 26.7 40 0.0014 20.6 2.2 17 148-164 16-32 (58)
75 1x6g_A Megakaryocyte-associate 26.7 44 0.0015 22.3 2.6 18 149-166 33-50 (81)
76 2csi_A RIM-BP2, RIM binding pr 26.6 45 0.0015 21.8 2.6 19 147-165 28-46 (76)
77 1wyx_A CRK-associated substrat 26.6 36 0.0012 21.7 2.1 16 149-164 19-34 (69)
78 2i6v_A General secretion pathw 26.5 30 0.001 23.1 1.7 15 147-161 32-46 (87)
79 2fpf_A C-JUN-amino-terminal ki 26.5 35 0.0012 21.9 2.0 17 149-165 22-38 (71)
80 1yfb_A Transition state regula 26.5 42 0.0014 22.2 2.4 24 141-164 25-48 (59)
81 2ak5_A RHO guanine nucleotide 26.4 39 0.0013 21.1 2.2 18 148-165 21-38 (64)
82 2qbw_A PDZ-fibronectin fusion 26.4 26 0.00087 26.3 1.5 21 139-161 30-50 (195)
83 2oaw_A Spectrin alpha chain, b 26.4 40 0.0014 20.9 2.2 16 149-164 17-32 (65)
84 1uj0_A Signal transducing adap 26.3 40 0.0014 21.0 2.2 16 149-164 21-36 (62)
85 4esr_A Jouberin; AHI-1, AHI1, 26.2 36 0.0012 21.6 2.0 17 148-164 21-37 (69)
86 2iim_A Proto-oncogene tyrosine 26.1 38 0.0013 21.1 2.1 16 149-164 22-37 (62)
87 2xmf_A Myosin 1E SH3; motor pr 26.0 37 0.0013 21.0 2.0 17 148-164 20-36 (60)
88 2nwm_A Vinexin; cell adhesion; 25.9 40 0.0014 21.6 2.2 16 149-164 17-32 (65)
89 1gl5_A Tyrosine-protein kinase 25.8 40 0.0014 21.4 2.2 16 149-164 18-33 (67)
90 2jw4_A Cytoplasmic protein NCK 25.8 44 0.0015 21.6 2.5 16 149-164 23-38 (72)
91 1tg0_A BBC1 protein, myosin ta 25.7 37 0.0013 21.6 2.0 16 149-164 23-38 (68)
92 1oot_A Hypothetical 40.4 kDa p 25.7 40 0.0014 20.8 2.1 17 149-165 19-35 (60)
93 2b86_A Cytoplasmic protein NCK 25.6 37 0.0013 22.2 2.1 16 149-164 20-35 (67)
94 1k4u_S Phagocyte NADPH oxidase 25.6 36 0.0012 21.2 1.9 16 149-164 21-36 (62)
95 1ue9_A Intersectin 2; beta bar 25.5 41 0.0014 22.0 2.3 17 149-165 23-39 (80)
96 1zlm_A Osteoclast stimulating 25.5 43 0.0015 20.5 2.2 16 149-164 19-34 (58)
97 2ct4_A CDC42-interacting prote 25.4 50 0.0017 21.0 2.6 17 149-165 23-39 (70)
98 1gbq_A GRB2; complex (signal t 25.3 29 0.00098 22.7 1.4 18 149-166 25-42 (74)
99 2ooi_A SA0254 protein; staphyl 25.2 40 0.0014 24.3 2.3 24 140-163 31-55 (162)
100 1csk_A C-SRC SH3 domain; phosp 25.1 45 0.0015 21.3 2.4 16 148-163 26-41 (71)
101 1o6a_A Putative flagellar moto 25.1 32 0.0011 24.4 1.7 19 145-163 33-51 (96)
102 3lhe_A GNTR family transcripti 25.1 34 0.0012 24.3 1.9 25 139-163 18-43 (143)
103 2jte_A CD2-associated protein; 25.0 41 0.0014 21.0 2.1 16 149-164 22-37 (64)
104 2ege_A Uncharacterized protein 25.0 43 0.0015 21.9 2.3 16 148-163 29-44 (75)
105 1x2p_A Protein arginine N-meth 25.0 46 0.0016 21.1 2.4 16 149-164 23-38 (68)
106 2lj0_A Sorbin and SH3 domain-c 24.9 38 0.0013 22.2 2.0 17 149-165 22-38 (65)
107 2drm_A Acanthamoeba myosin IB; 24.8 48 0.0016 20.2 2.3 16 149-164 19-34 (58)
108 2dl4_A Protein STAC; SH3 domai 24.8 49 0.0017 21.1 2.5 17 148-164 22-38 (68)
109 3hfi_A Putative regulator; str 24.7 35 0.0012 25.0 1.9 31 139-169 33-64 (170)
110 1zx6_A YPR154WP; SH3 domain, p 24.7 41 0.0014 20.6 2.0 16 149-164 18-33 (58)
111 1w1f_A Tyrosine-protein kinase 24.7 38 0.0013 21.2 1.9 16 149-164 23-38 (65)
112 2djq_A SH3 domain containing r 24.6 50 0.0017 20.9 2.5 16 149-164 23-38 (68)
113 4glm_A Dynamin-binding protein 24.6 40 0.0014 21.3 2.0 16 149-164 29-44 (72)
114 2o9s_A Ponsin; SH3 domain, sig 24.5 41 0.0014 21.3 2.0 16 149-164 22-37 (67)
115 1uhc_A KIAA1010 protein; beta 24.5 41 0.0014 22.1 2.1 17 149-165 29-45 (79)
116 2ydl_A SH3 domain-containing k 24.4 42 0.0014 21.9 2.1 16 149-164 18-33 (69)
117 3h0h_A Proto-oncogene tyrosine 24.4 44 0.0015 21.4 2.2 17 149-165 31-47 (73)
118 2dmo_A Neutrophil cytosol fact 24.4 38 0.0013 21.7 1.9 17 149-165 23-39 (68)
119 2uzc_A Human pdlim5, PDZ and L 24.3 36 0.0012 22.2 1.8 18 143-161 37-54 (88)
120 2kxd_A 11-MER peptide, SH3 dom 24.1 45 0.0016 21.5 2.2 16 149-164 15-30 (73)
121 3thk_A Spectrin alpha chain, b 24.1 46 0.0016 21.3 2.2 18 148-165 20-37 (73)
122 2k9g_A SH3 domain-containing k 24.0 43 0.0015 21.5 2.1 16 149-164 25-40 (73)
123 1o9y_A HRCQ2; secretory protei 24.0 37 0.0013 23.5 1.9 19 145-163 29-47 (84)
124 2i0n_A Class VII unconventiona 24.0 39 0.0013 22.4 1.9 18 149-166 26-43 (80)
125 2gnc_A SLIT-ROBO RHO GTPase-ac 23.9 37 0.0013 21.0 1.7 16 149-164 22-37 (60)
126 2fhd_A RAD9 homolog, DNA repai 23.8 30 0.001 27.7 1.5 26 134-161 48-73 (153)
127 2kxc_A Brain-specific angiogen 23.6 35 0.0012 21.6 1.6 15 149-163 23-37 (67)
128 1spk_A RSGI RUH-010, riken cDN 23.5 39 0.0013 21.7 1.8 16 148-163 23-38 (72)
129 3hrs_A Metalloregulator SCAR; 23.5 45 0.0015 26.2 2.5 31 139-169 156-189 (214)
130 1nm7_A Peroxisomal membrane pr 23.4 37 0.0013 22.5 1.7 17 149-165 24-40 (69)
131 2dl3_A Sorbin and SH3 domain-c 23.4 49 0.0017 20.9 2.2 16 149-164 23-38 (68)
132 2dbk_A CRK-like protein; struc 23.4 41 0.0014 22.7 2.0 16 149-164 34-49 (88)
133 2l32_A Small archaeal modifier 23.4 52 0.0018 22.3 2.5 40 122-163 22-62 (74)
134 2k5i_A Iron transport protein; 23.3 77 0.0026 24.5 3.8 25 149-174 29-53 (162)
135 3op6_A Uncharacterized protein 23.2 28 0.00097 25.9 1.2 43 118-160 2-46 (152)
136 1ndd_A NEDD8, protein (ubiquit 23.1 1.2E+02 0.0041 18.8 4.1 41 123-163 27-72 (76)
137 2d8j_A FYN-related kinase; SH3 23.1 38 0.0013 21.9 1.7 16 149-164 23-38 (77)
138 4f14_A Nebulette; SH3 domain, 23.0 46 0.0016 20.5 2.0 16 149-164 22-37 (64)
139 1wxb_A Epidermal growth factor 23.0 46 0.0016 21.2 2.1 16 149-164 23-38 (68)
140 3dtg_A Branched-chain amino ac 23.0 21 0.00072 30.9 0.5 29 45-75 276-304 (372)
141 1w70_A Neutrophil cytosol fact 23.0 43 0.0015 20.8 1.9 16 149-164 20-35 (60)
142 2i4s_A General secretion pathw 22.9 36 0.0012 23.5 1.7 15 147-161 50-64 (105)
143 2k2m_A EPS8-like protein 1; al 22.8 46 0.0016 21.3 2.1 16 149-164 24-39 (68)
144 2gu1_A Zinc peptidase; alpha/b 22.8 33 0.0011 29.4 1.7 49 117-165 12-61 (361)
145 1x2k_A OSTF1, osteoclast stimu 22.8 54 0.0018 20.8 2.4 16 149-164 23-38 (68)
146 3slu_A M23 peptidase domain pr 22.8 39 0.0013 29.6 2.2 50 115-164 17-67 (371)
147 2p19_A Transcriptional regulat 22.6 41 0.0014 23.8 1.9 24 140-163 18-42 (149)
148 2cre_A HEF-like protein; SH3 d 22.5 44 0.0015 21.2 1.9 16 149-164 23-38 (71)
149 2ke9_A Caskin-2; SH3 domain, A 22.4 34 0.0012 23.2 1.4 18 148-165 34-51 (83)
150 2ew3_A SH3-containing GRB2-lik 22.4 45 0.0016 21.6 2.0 16 149-164 19-34 (68)
151 2l9r_A Homeobox protein NKX-3. 22.2 12 0.0004 25.4 -1.1 41 112-154 5-45 (69)
152 2eeg_A PDZ and LIM domain prot 22.2 51 0.0017 22.0 2.3 16 146-161 44-59 (94)
153 3a9j_A Ubiquitin; protein comp 22.1 1.2E+02 0.004 18.8 3.9 41 123-163 27-72 (76)
154 2ikk_A Hypothetical transcript 22.1 43 0.0015 24.6 2.0 25 139-163 39-64 (173)
155 1yn8_A NBP2, NAP1-binding prot 22.0 43 0.0015 20.4 1.7 16 149-164 17-32 (59)
156 2j05_A RAS GTPase-activating p 21.8 49 0.0017 20.8 2.0 16 149-164 22-37 (65)
157 2ysq_A RHO guanine nucleotide 21.7 60 0.002 21.4 2.5 16 149-164 26-41 (81)
158 2ki8_A Tungsten formylmethanof 21.6 50 0.0017 24.8 2.3 26 138-163 53-78 (146)
159 4b6w_A Tubulin-specific chaper 21.5 1.1E+02 0.0038 21.0 3.9 43 123-165 31-85 (86)
160 3cqt_A P59-FYN, proto-oncogene 21.4 53 0.0018 21.9 2.2 17 149-165 21-37 (79)
161 1ruw_A Myosin-3 isoform, MYO3; 21.3 48 0.0016 21.1 1.9 17 148-164 18-34 (69)
162 3tiw_A Transitional endoplasmi 21.3 42 0.0014 26.8 1.9 20 145-164 44-63 (187)
163 1x69_A Cortactin isoform A; SH 21.2 56 0.0019 21.4 2.3 16 149-164 33-48 (79)
164 1jb0_E Photosystem 1 reaction 21.2 39 0.0013 24.1 1.5 13 152-164 1-13 (75)
165 2yun_A Nostrin; nitric oxide s 21.2 56 0.0019 21.4 2.2 17 149-165 23-39 (79)
166 2ekh_A SH3 and PX domain-conta 20.7 51 0.0018 21.8 2.0 17 149-165 24-40 (80)
167 2dl7_A KIAA0769 protein; SH3 d 20.7 70 0.0024 20.5 2.6 16 149-164 24-39 (73)
168 2dl5_A KIAA0769 protein; SH3 d 20.6 57 0.002 21.4 2.2 17 149-165 29-45 (78)
169 2yuq_A Tyrosine-protein kinase 20.5 46 0.0016 22.2 1.8 17 149-165 35-51 (85)
170 1wxt_A Hypothetical protein FL 20.5 55 0.0019 20.8 2.1 16 149-164 23-38 (68)
171 2lz1_A Nuclear factor erythroi 20.5 29 0.001 25.5 0.8 26 116-141 41-66 (90)
172 1x1m_A Ubiquitin-like protein 20.4 2.2E+02 0.0075 19.7 5.4 47 120-166 47-102 (107)
173 2eaq_A LIM domain only protein 20.4 49 0.0017 21.7 1.8 16 146-161 40-55 (90)
174 2fei_A CD2-associated protein; 20.4 38 0.0013 21.8 1.3 16 149-164 17-32 (65)
175 3m20_A 4-oxalocrotonate tautom 20.3 71 0.0024 20.1 2.6 36 117-164 9-44 (62)
176 3f8l_A HTH-type transcriptiona 20.3 47 0.0016 25.5 2.0 25 139-163 62-87 (201)
177 2vkn_A Protein SSU81; membrane 20.2 55 0.0019 20.9 2.0 16 148-163 22-37 (70)
178 1x2q_A Signal transducing adap 20.1 63 0.0021 21.7 2.4 16 149-164 33-48 (88)
179 2wkd_A ORF34P2; SSB, single-st 20.1 53 0.0018 25.2 2.1 26 152-177 54-81 (119)
No 1
>3h0g_E DNA-directed RNA polymerases I, II, and III subunit rpabc1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.4e-62 Score=408.37 Aligned_cols=146 Identities=34% Similarity=0.575 Sum_probs=139.3
Q ss_pred CCCChhhhHHHHHHHHHHHHHhcCCCCccChhhhccCHHHHHHHhCCC---CCCCceeEeecCCCCC-chh---------
Q 030447 32 VDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRISISHQSDP-SKR--------- 98 (177)
Q Consensus 32 m~~~~~e~~rl~r~rrTv~eMl~DRGY~V~~~el~~sl~~F~~~y~~~---~~r~~L~~~~~~~~dp-~~k--------- 98 (177)
|+++++|++||||+|||++|||+||||.|+++|+++|+++|+++||+. |+|++|+|++.+.+|| +++
T Consensus 1 m~~~~~e~~rl~rirrTv~eMl~DRGY~v~~~e~~~sl~~F~~~~~~~~~~~~r~~l~~~~~~~~dp~~~~i~VfF~~~~ 80 (210)
T 3h0g_E 1 MSAEEKNIVRVFRAWKTAHQLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLSFYAKPSNDSNKGTIYIEFAKEP 80 (210)
T ss_dssp ---CTHHHHHHHGGGSSSSSTTTTTTEECCTTTTSCCHHHHHHHSCCSSSSCCCSSCCCEEEESSCSSCCCEEEECCCSS
T ss_pred CCcchHHHHHHHHHHHHHHHHhcCCCCccCHHHHhCCHHHHHHHhcccCCCCCchheEEEEEcCCCCccCeEEEEECCCC
Confidence 567789999999999999999999999999999999999999999875 8899999999999999 655
Q ss_pred ---------------------------------------------------hhhhhhcCCcccccCCceecCHHHHHHHH
Q 030447 99 ---------------------------------------------------ITDLLVNITKHVLKPKHQVLTDQEKEKLL 127 (177)
Q Consensus 99 ---------------------------------------------------e~eLlvNIt~H~LVPkH~vLs~eEk~~lL 127 (177)
|+||+||||+|+|||||++||+|||++||
T Consensus 81 ~vgvk~Ir~~~~~~~~en~~~~IiV~q~~~t~~A~~~l~~~~~~~~iE~F~e~eLlvnit~H~lVPkH~~ls~eE~~~lL 160 (210)
T 3h0g_E 81 SVGIKEMRTFVHTLGDHNHKTGILIYANSMTPSAAKIIATVTGQFTIETFQESDLIVNITHHELVPKHILLSPDEKKELL 160 (210)
T ss_dssp SCCTTTTGGGTHHHHHTTCSEEEECCSSCCCSHHHHTTTTTCTTCEECCCCSSSSCSCTTSBTTBCCEECCCHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHcCCceEEEEECCCCCHHHHHHHHHhCcCcEEEEEeehHeeEecccccccCcEEEcCHHHHHHHH
Confidence 99999999999999999999999999999
Q ss_pred hhcCCCcCCCCCcccCChhhhhhCCCCCCEEEEEecCCCCccceEEEEeC
Q 030447 128 KKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 177 (177)
Q Consensus 128 ~~y~i~~~QLPrI~~sDPvary~Glk~GdVVKI~R~SetaG~~v~YR~V~ 177 (177)
++|+++++|||||+.+||||+||||++||||||+|+|+|||+||+||+|+
T Consensus 161 ~~y~i~~~qLP~I~~~DPv~~~~g~k~GdVvkI~R~s~tag~~v~YR~V~ 210 (210)
T 3h0g_E 161 DRYKLRETQLPRIQLADPVARYLGLKRGEVVKIVRRSETSGRYNSYRICA 210 (210)
T ss_dssp HHTCCCTTTSCCCCTTCHHHHHHTCCTTCEEEEECCCCTTSCCEEEEECC
T ss_pred HHcCCCHHHCCcccccCcchhhhCCCCCCEEEEEeCCCCCCCceEEEEeC
Confidence 99999999999999999999999999999999999999999999999996
No 2
>1dzf_A DNA-directed RNA polymerases I, II, and III 27 KD polypeptide; RNA polymerase subunit; 1.9A {Saccharomyces cerevisiae} SCOP: c.52.3.1 d.78.1.1 PDB: 1i3q_E 1i50_E 1i6h_E 1k83_E* 1nik_E 1nt9_E 1pqv_E 1r5u_E 1r9s_E* 1r9t_E* 1sfo_E* 1twa_E* 1twc_E* 1twf_E* 1twg_E* 1twh_E* 1wcm_E 1y1v_E 1y1w_E 1y1y_E ...
Probab=100.00 E-value=1.1e-60 Score=401.76 Aligned_cols=143 Identities=38% Similarity=0.634 Sum_probs=137.9
Q ss_pred ChhhhHHHHHHHHHHHHHhcCCCCccChhhhccCHHHHHHHhCC---CCCCCceeEeecCCCCCchh-------------
Q 030447 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQ---DPDVDRLRISISHQSDPSKR------------- 98 (177)
Q Consensus 35 ~~~e~~rl~r~rrTv~eMl~DRGY~V~~~el~~sl~~F~~~y~~---~~~r~~L~~~~~~~~dp~~k------------- 98 (177)
++.|+.||||+|||++|||+||||.|+++|+++|+++|+++||+ .|+|++|+|++.+.+||++|
T Consensus 5 ~~~e~~rl~r~rrTv~eMl~DRGY~v~~~e~~~sl~~F~~~~~~~~g~p~r~~L~~~~~~~~d~~~k~~~~~~~~VfF~~ 84 (215)
T 1dzf_A 5 NERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEESISKFPDMGSLWVEFCD 84 (215)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTBCCCHHHHTCCHHHHHHHHBCTTSCBCGGGTCEEECBCHHHHHHCTTCCCEEEEECS
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCccCHhHhcCCHHHHHHHHccccCCCchhheEEEecCCCChhhhhccCCceEEEecC
Confidence 45889999999999999999999999999999999999999987 79999999999998877664
Q ss_pred ----------------------------------------------------hhhhhhcCCcccccCCceecCHHHHHHH
Q 030447 99 ----------------------------------------------------ITDLLVNITKHVLKPKHQVLTDQEKEKL 126 (177)
Q Consensus 99 ----------------------------------------------------e~eLlvNIt~H~LVPkH~vLs~eEk~~l 126 (177)
|+||+||||+|+|||||++||+|||++|
T Consensus 85 ~~~vgvk~ir~~~~~~~~e~~~~~IlV~q~~itp~Ak~~l~~~~~~~iE~F~e~eL~vni~~H~lVP~H~~l~~eE~~~l 164 (215)
T 1dzf_A 85 EPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSIPPATIETFNEAALVVNITHHELVPKHIRLSSDEKREL 164 (215)
T ss_dssp SSEECHHHHHHHHHHHHHTTCSEEEEEESSEECHHHHTTTTSSTTCEEEEEEHHHHSSCGGGSTTSCEEEECCHHHHHHH
T ss_pred CCccchHHHHHHHHHHHhcCCceEEEEECCCCChHHHHHHHHhcCceEEEeehHHheeccccceeccceEEccHHHHHHH
Confidence 9999999999999999999999999999
Q ss_pred HhhcCCCcCCCCCcccCChhhhhhCCCCCCEEEEEecCCCCccceEEEEeC
Q 030447 127 LKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 177 (177)
Q Consensus 127 L~~y~i~~~QLPrI~~sDPvary~Glk~GdVVKI~R~SetaG~~v~YR~V~ 177 (177)
|++|+|+++|||||+.+||||||||||+||||||+|+|+|||+||+||+|+
T Consensus 165 L~~y~i~~~qLP~I~~~DPvar~~g~k~G~vvkI~R~s~tag~~v~YR~vv 215 (215)
T 1dzf_A 165 LKRYRLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYRICM 215 (215)
T ss_dssp HHHTTCCGGGSCEECTTCHHHHHHTCCTTCEEEEECTTCSSSTTCEEEEEC
T ss_pred HHHcCCCHHHCCceeccChhhHHhCCcCCCEEEEEECCCCCCCceEEEEeC
Confidence 999999999999999999999999999999999999999999999999996
No 3
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=100.00 E-value=2.8e-42 Score=250.95 Aligned_cols=76 Identities=34% Similarity=0.577 Sum_probs=74.9
Q ss_pred hhhcCCcccccCCceecCHHHHHHHHhhcCCCcCCCCCcccCChhhhhhCCCCCCEEEEEecCCCCccceEEEEeC
Q 030447 102 LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 177 (177)
Q Consensus 102 LlvNIt~H~LVPkH~vLs~eEk~~lL~~y~i~~~QLPrI~~sDPvary~Glk~GdVVKI~R~SetaG~~v~YR~V~ 177 (177)
|+||||+|+|||||++||+|||++||++|+++++|||||+.+||+|||||+++||||||+|+|+|||+||+||+|+
T Consensus 1 l~vnIt~H~LVPkH~iLs~eEk~~lL~~y~i~~~qLP~I~~~DPvar~~G~k~GdVvkI~R~S~taG~~v~YR~Vv 76 (77)
T 1eik_A 1 MKREILKHQLVPEHVILNESEAKRVLKELDAHPEQLPKIKTTDPVAKAIGAKRGDIVKIIRKSPTAEEFVTYRLVQ 76 (77)
T ss_dssp CCCCCCSSSSCCEEEEECHHHHHHHHHHTTCCTTTSCCCBTTSHHHHGGGCCTTCEEEEEEEETTTEEEEEEEECB
T ss_pred CcccCccceecCCEEEcCHHHHHHHHHHcCCCHHHCCeeeCcCHhhHHhCCCCCCEEEEEECCCCCCCcEEEEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999996
No 4
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=100.00 E-value=4.8e-41 Score=245.00 Aligned_cols=74 Identities=34% Similarity=0.653 Sum_probs=73.1
Q ss_pred hcCCcccccCCceecCHHHHHHHHhhcCCCcCCCCCcccCChhhhhhCCCCCCEEEEEecCCCCccceEEEEeC
Q 030447 104 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 177 (177)
Q Consensus 104 vNIt~H~LVPkH~vLs~eEk~~lL~~y~i~~~QLPrI~~sDPvary~Glk~GdVVKI~R~SetaG~~v~YR~V~ 177 (177)
||||+|+|||||++||+|||++||++|+++++|||||+.+||+|||||+++||||||+|+|+|||+|++||+|+
T Consensus 1 vnIt~H~LVPkH~iLs~eEk~~lL~~y~i~~~qLPrI~~~DPvar~~G~k~GdVvkI~R~S~taG~~v~YR~Vv 74 (78)
T 1hmj_A 1 MKVTDHILVPKHEIVPKEEVEEILKRYNIKIQQLPKIYEDDPVIQEIGAKEGDVVRVIRKSPTAGVSIAYRLVI 74 (78)
T ss_pred CCccceeeCCCeEECCHHHHHHHHHHcCCCHHHCCeeeCcCHhhHHhCCCCCCEEEEEECCCCCCCcEEEEEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999996
No 5
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=100.00 E-value=1.4e-39 Score=239.57 Aligned_cols=79 Identities=28% Similarity=0.456 Sum_probs=74.4
Q ss_pred hhhhhhcCCcccccCCceecCHHHHHHHHhhcCCCcCCCCCcccCChhhhhhCCCCCCEEEEEecCCCCccceEEEEeC
Q 030447 99 ITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 177 (177)
Q Consensus 99 e~eLlvNIt~H~LVPkH~vLs~eEk~~lL~~y~i~~~QLPrI~~sDPvary~Glk~GdVVKI~R~SetaG~~v~YR~V~ 177 (177)
.+.++||||+|+|||+|++||+||+++||++|+++++|||+|+.+||||+|||+++||||||+|+|+|||++++||+|+
T Consensus 4 ~~~~~~Ni~~H~LVPkH~vLs~eE~~~ll~~y~i~~~qLP~I~~~DPva~~~g~k~GdVvkI~R~S~tag~~~~YR~vv 82 (84)
T 4ayb_H 4 SSNRKIDPRIHYLVPKHEVLSIDEAYKILKELGIRPEQLPWIRASDPVARSINAKPGDIIRIIRKSQLYGEVVSYRYVI 82 (84)
T ss_dssp ----CCCCSSSSSCCEEEECCHHHHHHHHHHHTCCGGGSCCEESSSHHHHHHTCCTTCEEEEEEEETTTEEEEEEEEEE
T ss_pred cccceecccccccCCCeEECCHHHHHHHHHHhcCCHhHCCeecccCHhHHhhCCCCCCEEEEEEcCCCCCccEEEEEEe
Confidence 3678999999999999999999999999999999999999999999999999999999999999999999999999996
No 6
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=77.05 E-value=2.3 Score=31.53 Aligned_cols=50 Identities=20% Similarity=0.189 Sum_probs=38.1
Q ss_pred CHHHHHHHHhhcCCC-cCCC-CCcccCChhhhhhCCCCCCEEEEEecCCCCccc
Q 030447 119 TDQEKEKLLKKYSIE-EKQL-PRMLKKDAIAQYYGLERGQVVKVTYSGEITESH 170 (177)
Q Consensus 119 s~eEk~~lL~~y~i~-~~QL-PrI~~sDPvary~Glk~GdVVKI~R~SetaG~~ 170 (177)
|+..+..||.+|..+ ..|. |.+..++++ -+.|++||+|-|+.+.-+.|..
T Consensus 3 t~~qr~~L~~~y~~~~LY~~t~~~~~tq~~--dl~l~~GdlVAVl~k~Dp~Gn~ 54 (92)
T 1ug1_A 3 SGSSGASLLARYPPEKLFQAERNFNAAQDL--DVSLLEGDLVGVIKKKDPMGSQ 54 (92)
T ss_dssp HHHHHHHHHHHSCGGGEEEESSCCCCCSSS--CCCCCTTCEEEEEESCCTTSCS
T ss_pred hHHHHHHHHhhCCchheEEeccCcCCCCce--eeeecCCCEEEEEecCCCCCCC
Confidence 467789999999864 3333 667776654 5789999999999998777753
No 7
>3e19_A FEOA; transcriptional regulator, metal-binding, iron uptake, beta- transcription regulator, metal binding protein; HET: GOL; 2.00A {Thermococcus thioreducens}
Probab=61.17 E-value=9 Score=25.55 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=17.4
Q ss_pred hCCCCCCEEEEEecCCCCccceEEE
Q 030447 150 YGLERGQVVKVTYSGEITESHVTYR 174 (177)
Q Consensus 150 ~Glk~GdVVKI~R~SetaG~~v~YR 174 (177)
+|+.+|..|++.++++. | .+.++
T Consensus 34 lGi~~G~~v~v~~~~p~-g-p~~v~ 56 (77)
T 3e19_A 34 MGLTPGATIQVLESHPM-G-PIIIS 56 (77)
T ss_dssp TTCSTTCEEEEEEC--C-C-CEEEE
T ss_pred CCCCCCCEEEEEEecCC-C-CEEEE
Confidence 59999999999999875 6 66654
No 8
>2pn0_A Prokaryotic transcription elongation factor GREA/GREB; structural genomics, APC6349, PSI-2, protein structure initiative; HET: MSE; 1.70A {Nitrosomonas europaea}
Probab=60.68 E-value=8.6 Score=29.21 Aligned_cols=36 Identities=17% Similarity=0.275 Sum_probs=28.3
Q ss_pred CCcccCChhhhhh-CCCCCCEEEEEecCCCCccceEEEEe
Q 030447 138 PRMLKKDAIAQYY-GLERGQVVKVTYSGEITESHVTYRCV 176 (177)
Q Consensus 138 PrI~~sDPvary~-Glk~GdVVKI~R~SetaG~~v~YR~V 176 (177)
=+|+..-|+++.+ |.+.||.|.+.-++ |....|+++
T Consensus 89 ~~IS~~SPlG~ALlGk~vGD~v~v~~P~---G~~~~~~I~ 125 (141)
T 2pn0_A 89 EKISILAPVGSALLGLAQGDEIEWPKPG---GGVLRVRIV 125 (141)
T ss_dssp CEEETTSTTHHHHTTCBTTCEEEEECTT---SSEEEEEEE
T ss_pred CEEcCCCHHHHHHcCCCCCCEEEEEcCC---CCEEEEEEE
Confidence 3799999999875 99999999998764 434566654
No 9
>3bmb_A Regulator of nucleoside diphosphate kinase; RNA polymerase, elongation factor, anti-GRE factor, RNA binding protein; 1.91A {Escherichia coli}
Probab=59.31 E-value=9.6 Score=28.66 Aligned_cols=35 Identities=11% Similarity=0.222 Sum_probs=27.7
Q ss_pred CcccCChhhhhh-CCCCCCEEEEEecCCCCccceEEEEe
Q 030447 139 RMLKKDAIAQYY-GLERGQVVKVTYSGEITESHVTYRCV 176 (177)
Q Consensus 139 rI~~sDPvary~-Glk~GdVVKI~R~SetaG~~v~YR~V 176 (177)
+|+..-|+++.+ |.+.||.|.+.-++ |+...|+++
T Consensus 87 ~IS~~SPlG~ALlGk~~GD~v~v~~p~---G~~~~~~I~ 122 (136)
T 3bmb_A 87 QLSVMAPVGAALLGLRVGDSIHWELPG---GVATHLEVL 122 (136)
T ss_dssp EEETTSHHHHHHTTCBTTCEEEEEETT---TEEEEEEEE
T ss_pred EecCCCHHHHHHcCCCCCCEEEEEcCC---CCEEEEEEE
Confidence 899999999875 99999999998764 434566553
No 10
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=57.69 E-value=14 Score=28.71 Aligned_cols=34 Identities=12% Similarity=0.121 Sum_probs=27.7
Q ss_pred CcccCChhhhhh-CCCCCCEEEEEecCCCCccceEEEEe
Q 030447 139 RMLKKDAIAQYY-GLERGQVVKVTYSGEITESHVTYRCV 176 (177)
Q Consensus 139 rI~~sDPvary~-Glk~GdVVKI~R~SetaG~~v~YR~V 176 (177)
+|+..-|+++.| |.+.||.|.+.-++ |. ..|+++
T Consensus 117 ~IS~~SPlg~ALlGk~vGD~v~v~~P~---G~-~~~~I~ 151 (158)
T 2p4v_A 117 YISIDSPMARALLKKEVGDLAVVNTPA---GE-ASWYVN 151 (158)
T ss_dssp CBCTTSHHHHHSTTCCTTCEEEEECSS---CE-EEEEEE
T ss_pred eecCCCHHHHHhcCCCCCCEEEEEcCC---Cc-EEEEEE
Confidence 899999999875 99999999998875 33 566654
No 11
>2k4y_A FEOA-like protein; GFT structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Clostridium acetobutylicum}
Probab=55.98 E-value=12 Score=25.68 Aligned_cols=35 Identities=11% Similarity=0.340 Sum_probs=23.6
Q ss_pred CcccCChhhhh---hCCCCCCEEEEEecCCCCccceEEE
Q 030447 139 RMLKKDAIAQY---YGLERGQVVKVTYSGEITESHVTYR 174 (177)
Q Consensus 139 rI~~sDPvary---~Glk~GdVVKI~R~SetaG~~v~YR 174 (177)
+|..+..+.++ +|+.||..|+|+++++..|. +.++
T Consensus 20 ~i~~~~~~~~rL~~mGl~pG~~V~V~~~~p~~gp-i~v~ 57 (86)
T 2k4y_A 20 GIVPESKVRRKIMDMGIVRGTEIYIEGKAPMGDP-IALR 57 (86)
T ss_dssp EECTTSSHHHHHHHHTCCTTCEEEEEEECTTSCS-EEEE
T ss_pred EEECCHHHHHHHHHCCCCCCCEEEEEEeCCCCCC-EEEE
Confidence 34443344444 59999999999999876654 4443
No 12
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium thermocellum atcc 27405}
Probab=55.88 E-value=13 Score=25.20 Aligned_cols=35 Identities=11% Similarity=0.302 Sum_probs=23.3
Q ss_pred CcccCChhhhh---hCCCCCCEEEEEecCCCCccceEEE
Q 030447 139 RMLKKDAIAQY---YGLERGQVVKVTYSGEITESHVTYR 174 (177)
Q Consensus 139 rI~~sDPvary---~Glk~GdVVKI~R~SetaG~~v~YR 174 (177)
+|..+..+.++ +|+.||..|+|+++++..|. +.++
T Consensus 17 ~i~~~~~~~~rL~~lGl~pG~~v~V~~~~p~~gp-i~v~ 54 (81)
T 2k5l_A 17 KLHGTGALKRRIMDMGITRGCEIYIRKVAPLGDP-IQIN 54 (81)
T ss_dssp EECSSSHHHHHHHHHTCCTTCEEEEEEECTTSCC-EEEE
T ss_pred EEECCHHHHHHHHHCCCCCCCEEEEEEeCCCCCC-EEEE
Confidence 34443344444 59999999999999876553 4443
No 13
>3mhx_A Putative ferrous iron transport protein A; FEOA, zinc binding, prokaryotic SH3 stenotrophomonus maltophilia, metal transport; 1.70A {Stenotrophomonas maltophilia}
Probab=54.18 E-value=17 Score=24.74 Aligned_cols=31 Identities=26% Similarity=0.452 Sum_probs=22.0
Q ss_pred Chhhhh---hCCCCCCEEEEEecCCCCccceEEE
Q 030447 144 DAIAQY---YGLERGQVVKVTYSGEITESHVTYR 174 (177)
Q Consensus 144 DPvary---~Glk~GdVVKI~R~SetaG~~v~YR 174 (177)
+.+.++ +|+.+|..|+|+++++..+..+.++
T Consensus 25 ~~~~~rL~~lGl~pG~~v~V~~~~p~g~~pi~v~ 58 (85)
T 3mhx_A 25 DAIARRLRELGFVKGEEVRMVAKGPVGGEPLLVQ 58 (85)
T ss_dssp CHHHHHHHHTTCCTTCEEEEEESCSSSCSCEEEE
T ss_pred HHHHHHHHHCCCCCCCEEEEEEeCCCCCCCEEEE
Confidence 344444 5999999999999987652445554
No 14
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=52.79 E-value=15 Score=28.20 Aligned_cols=35 Identities=14% Similarity=0.282 Sum_probs=28.2
Q ss_pred CCcccCChhhhhh-CCCCCCEEEEEecCCCCccceEEEEe
Q 030447 138 PRMLKKDAIAQYY-GLERGQVVKVTYSGEITESHVTYRCV 176 (177)
Q Consensus 138 PrI~~sDPvary~-Glk~GdVVKI~R~SetaG~~v~YR~V 176 (177)
-+|+..-|+++.| |.+.||.|.+.-++ |. ..|+++
T Consensus 117 ~~IS~~SPlG~ALlGk~~GD~v~~~~p~---G~-~~~~I~ 152 (156)
T 2f23_A 117 MKISDASPMGKALLGHRVGDVLSLDTPK---GK-REFRVV 152 (156)
T ss_dssp EEEETTSHHHHHHTTCCTTCEEEEEETT---EE-EEEEEE
T ss_pred EEECCCCHHHHHHcCCCCCCEEEEEcCC---Cc-EEEEEE
Confidence 4899999999875 99999999999875 33 466654
No 15
>2h3j_A Hypothetical protein PA4359; NESG, GFT structural genomics, PAT89, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.34.1.2
Probab=47.52 E-value=19 Score=23.53 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=17.7
Q ss_pred hhCCCCCCEEEEEecCCCCcc
Q 030447 149 YYGLERGQVVKVTYSGEITES 169 (177)
Q Consensus 149 y~Glk~GdVVKI~R~SetaG~ 169 (177)
.+|+.||..|++.++++..|.
T Consensus 29 ~lGl~~G~~v~v~~~~p~~~p 49 (75)
T 2h3j_A 29 SMGLLPGAALRVVRIAPLGDP 49 (75)
T ss_dssp HHTCCTTCEEEEEECCTTSCC
T ss_pred HcCCCCCCEEEEEEECCCCCC
Confidence 359999999999999876654
No 16
>2gcx_A FEOA, ferrous iron transport protein A; NMR {Klebsiella pneumoniae} SCOP: b.34.1.2
Probab=47.29 E-value=16 Score=24.10 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=19.0
Q ss_pred hhCCCCCCEEEEEecCCCCccceEEE
Q 030447 149 YYGLERGQVVKVTYSGEITESHVTYR 174 (177)
Q Consensus 149 y~Glk~GdVVKI~R~SetaG~~v~YR 174 (177)
.+|+.+|..|++++.++..| .+.++
T Consensus 28 ~lGl~pG~~v~v~~~~p~~g-pi~v~ 52 (75)
T 2gcx_A 28 SLGMLPGSSFHVVRVAPLGD-PVHIE 52 (75)
T ss_dssp TTTCCSSEEEEECCCCSSCC-EEEEE
T ss_pred HCCCCCCCEEEEEEeCCCCC-CEEEE
Confidence 35999999999999987654 44444
No 17
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=45.85 E-value=0.9 Score=32.41 Aligned_cols=37 Identities=19% Similarity=0.402 Sum_probs=30.6
Q ss_pred HHHHhhcCCCcCCCCCcccCChhhhhhCCCCCCEEEEEe
Q 030447 124 EKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 162 (177)
Q Consensus 124 ~~lL~~y~i~~~QLPrI~~sDPvary~Glk~GdVVKI~R 162 (177)
...+.+-++.++-||-|.. .+-|-+|++.||||+|.+
T Consensus 23 A~~F~~~ri~e~mL~Dl~~--~~Lr~LGi~eGDIIrVmk 59 (72)
T 3idw_A 23 TINFDREQLTEDMMPDINN--SMLRTLGLREGDIVRVMK 59 (72)
T ss_dssp HHHHHHTTCCGGGGGGCCH--HHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHccCCHHHHhhCCH--HHHHHcCCchhhHHHHHH
Confidence 3455677899999998865 589999999999999865
No 18
>1vki_A Hypothetical protein ATU3699; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.60A {Agrobacterium tumefaciens str} SCOP: d.116.1.1
Probab=42.18 E-value=17 Score=28.20 Aligned_cols=47 Identities=17% Similarity=0.092 Sum_probs=36.2
Q ss_pred CceecCHHHHHHHHhhcCCCcC--CCCCcccCChhhhhhCCCCCCEEEE
Q 030447 114 KHQVLTDQEKEKLLKKYSIEEK--QLPRMLKKDAIAQYYGLERGQVVKV 160 (177)
Q Consensus 114 kH~vLs~eEk~~lL~~y~i~~~--QLPrI~~sDPvary~Glk~GdVVKI 160 (177)
+-...+.+...++|++.+|.-+ ..|-....+-+|.++|..+++++|-
T Consensus 15 ~~~~~~~~~~~~~L~~~~i~~~~~~~p~~~T~ee~a~~l~~~~~~~~Kt 63 (181)
T 1vki_A 15 ENSRKTATELFEFLDGLGISHTTKQHEPVFTVAESQSLRDLIPGGHTKN 63 (181)
T ss_dssp --CCCCHHHHHHHHHHHTCCCEEEECCCCCSHHHHHHHHTTSCSEEEEE
T ss_pred cccchHHHHHHHHHHHCCCCeEEEECCCCCCHHHHHHHcCCCccceeEE
Confidence 3444577789999999999743 4566666777899999999999995
No 19
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1
Probab=37.70 E-value=15 Score=23.38 Aligned_cols=16 Identities=6% Similarity=0.324 Sum_probs=13.4
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|++..
T Consensus 24 ~Lsf~~Gd~i~v~~~~ 39 (67)
T 3rnj_A 24 LLSFKEGDLITLLVPE 39 (67)
T ss_dssp BCCBCTTCEEEECSSS
T ss_pred CccCCCCCEEEEeecc
Confidence 3889999999998653
No 20
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1
Probab=37.55 E-value=23 Score=23.29 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=14.9
Q ss_pred hhhCCCCCCEEEEEecC
Q 030447 148 QYYGLERGQVVKVTYSG 164 (177)
Q Consensus 148 ry~Glk~GdVVKI~R~S 164 (177)
-.|.+++||+|.|+.+.
T Consensus 33 ~eLsf~~Gd~i~v~~~~ 49 (78)
T 1k1z_A 33 GFLRLNPGDIVELTKAE 49 (78)
T ss_dssp CCCCBCTTCEEEEEECC
T ss_pred CccCCCCCCEEEEEEcC
Confidence 56889999999999884
No 21
>2yuj_A Ubiquitin fusion degradation 1-like; ubiquitin-dependent proteolytic, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.75 E-value=33 Score=27.94 Aligned_cols=35 Identities=17% Similarity=0.129 Sum_probs=28.9
Q ss_pred cccCChhhhhhCCCCCCEEEEEecCCCCccceEEE
Q 030447 140 MLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 174 (177)
Q Consensus 140 I~~sDPvary~Glk~GdVVKI~R~SetaG~~v~YR 174 (177)
|.-..-+.+.+|+++||+|+|.-.+-..|.+|..+
T Consensus 89 i~lP~wmm~~L~l~~gd~V~v~~~~LPkgt~vklq 123 (190)
T 2yuj_A 89 CYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQ 123 (190)
T ss_dssp EECCSHHHHHHTCCTTEEEEEEEECCCCCSEEEEE
T ss_pred EEeCHHHHHhcCCCCCCEEEEEEeecCCCcEEEEE
Confidence 44455689999999999999998888888888765
No 22
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=36.43 E-value=24 Score=24.81 Aligned_cols=19 Identities=11% Similarity=0.179 Sum_probs=16.7
Q ss_pred hhhhhhCCCCCCEEEEEec
Q 030447 145 AIAQYYGLERGQVVKVTYS 163 (177)
Q Consensus 145 Pvary~Glk~GdVVKI~R~ 163 (177)
.|++.+|+++||++.+.=.
T Consensus 32 eI~kaLgIk~gD~fel~ve 50 (68)
T 3o27_A 32 DIAEALDIKPDDTFILNME 50 (68)
T ss_dssp HHHHHTTCCTTCCEEEEEE
T ss_pred HHHHHhCCCCCCEEEEEEe
Confidence 6899999999999988654
No 23
>2lx9_A Ferrous iron transport protein A; FEOA; NMR {Escherichia coli}
Probab=36.38 E-value=29 Score=23.87 Aligned_cols=24 Identities=13% Similarity=0.263 Sum_probs=18.9
Q ss_pred hCCCCCCEEEEEecCCCCccceEEE
Q 030447 150 YGLERGQVVKVTYSGEITESHVTYR 174 (177)
Q Consensus 150 ~Glk~GdVVKI~R~SetaG~~v~YR 174 (177)
+|+-||..|++++.++..| .+.+|
T Consensus 29 mGl~pG~~V~Vi~~ap~gg-Pi~v~ 52 (83)
T 2lx9_A 29 LGMLPGSSFNVVRVAPLGD-PIHIE 52 (83)
T ss_dssp SSCCSSSEEEEEEECTTTC-CEEEE
T ss_pred CCCCCCCEEEEEEeCCCCC-cEEEE
Confidence 5999999999999987654 34443
No 24
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Probab=36.11 E-value=26 Score=21.56 Aligned_cols=16 Identities=13% Similarity=0.117 Sum_probs=14.0
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.+.+++||+|.|+.++
T Consensus 18 eLs~~~Gd~i~v~~~~ 33 (60)
T 2v1q_A 18 ELTIKSGDKVYILDDK 33 (60)
T ss_dssp BCCBCTTCEEEEEESS
T ss_pred CccCCCCCEEEEEeCC
Confidence 5779999999999875
No 25
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Probab=36.00 E-value=25 Score=22.45 Aligned_cols=16 Identities=25% Similarity=0.538 Sum_probs=14.2
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+.+.
T Consensus 26 eLsf~~Gd~i~v~~~~ 41 (70)
T 1gcq_C 26 FLRLNPGDIVELTKAE 41 (70)
T ss_dssp BCCBCTTCEEEEEECC
T ss_pred cCCcCCCCEEEEEeCC
Confidence 6889999999999883
No 26
>1zc1_A Ubiquitin fusion degradation protein 1; UFD1, double-PSI-beta-barrel, protein turnover; NMR {Saccharomyces cerevisiae}
Probab=35.37 E-value=30 Score=28.61 Aligned_cols=31 Identities=10% Similarity=0.246 Sum_probs=26.2
Q ss_pred ChhhhhhCCCCCCEEEEEecCCCCccceEEE
Q 030447 144 DAIAQYYGLERGQVVKVTYSGEITESHVTYR 174 (177)
Q Consensus 144 DPvary~Glk~GdVVKI~R~SetaG~~v~YR 174 (177)
.-+.+.+|+++||+|+|.-.+-..|.+|..+
T Consensus 98 ~wmm~~L~l~~gd~V~i~~~~LPkgt~vklq 128 (208)
T 1zc1_A 98 QWMMETLGIQPGSLLQISSTDVPLGQFVKLE 128 (208)
T ss_dssp HHHHHHHTCCTTCEEEEEEEECCCCSEEEEE
T ss_pred HHHHHhcCCCCCCEEEEEEeEcCCCCEEEEe
Confidence 3478899999999999998888888888754
No 27
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=35.03 E-value=16 Score=24.50 Aligned_cols=20 Identities=10% Similarity=0.154 Sum_probs=14.6
Q ss_pred cccCChhhhhhCCCCCCEEEEE
Q 030447 140 MLKKDAIAQYYGLERGQVVKVT 161 (177)
Q Consensus 140 I~~sDPvary~Glk~GdVVKI~ 161 (177)
+...-|.++ |+++||+|-=+
T Consensus 42 V~~~spA~~--gL~~GD~I~~v 61 (95)
T 1mfg_A 42 VQPEGPASK--LLQPGDKIIQA 61 (95)
T ss_dssp ECTTSTTTT--TCCTTCEEEEE
T ss_pred ECCCCchhh--CCCCCCEEEEE
Confidence 445567777 99999988533
No 28
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}
Probab=34.47 E-value=29 Score=21.01 Aligned_cols=17 Identities=12% Similarity=0.386 Sum_probs=14.5
Q ss_pred hhCCCCCCEEEEEecCC
Q 030447 149 YYGLERGQVVKVTYSGE 165 (177)
Q Consensus 149 y~Glk~GdVVKI~R~Se 165 (177)
.|-+++||+|.|+.+..
T Consensus 16 eLs~~~Gd~i~v~~~~~ 32 (54)
T 2a28_A 16 EISIDPGDIITVIRGDD 32 (54)
T ss_dssp BCCBCTTCEEEEEECCC
T ss_pred CccCCCCCEEEEEEecC
Confidence 57789999999998863
No 29
>1vjf_A DNA-binding protein, putative; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI; HET: MSE; 1.62A {Caulobacter crescentus CB15} SCOP: d.116.1.1
Probab=34.41 E-value=15 Score=28.47 Aligned_cols=47 Identities=13% Similarity=0.176 Sum_probs=37.1
Q ss_pred CceecCHHHHHHHHhhcCCCcC--CCCCcccCChhhhhhCCCCCCEEEE
Q 030447 114 KHQVLTDQEKEKLLKKYSIEEK--QLPRMLKKDAIAQYYGLERGQVVKV 160 (177)
Q Consensus 114 kH~vLs~eEk~~lL~~y~i~~~--QLPrI~~sDPvary~Glk~GdVVKI 160 (177)
.|...+.+...++|++.+|.-+ ..|-....+-+|.++|..+++++|-
T Consensus 10 ~~~~~~~~~v~~~L~~~~i~~~~~~~p~~~T~ee~a~~l~~~~~~~~Kt 58 (180)
T 1vjf_A 10 HHHMKTRADLFAFFDAHGVDHKTLDHPPVFRVEEGLEIKAAMPGGHTKN 58 (180)
T ss_dssp ---CCCHHHHHHHHHHHTCCCEEEECCCCCSHHHHHHHHHHSCSEEEEE
T ss_pred hcccchHHHHHHHHHHCCCCEEEEecCCCCCHHHHHHHcCCCccceeeE
Confidence 5777899999999999999754 3466666777899999999999984
No 30
>2ogg_A Trehalose operon transcriptional repressor; gene repressor, sugar binding, structural genomics, PSI-2, P structure initiative; 2.50A {Bacillus subtilis} SCOP: d.190.1.2
Probab=33.83 E-value=22 Score=25.36 Aligned_cols=24 Identities=13% Similarity=0.040 Sum_probs=19.1
Q ss_pred cccCChhhhhhCCCCCC-EEEEEec
Q 030447 140 MLKKDAIAQYYGLERGQ-VVKVTYS 163 (177)
Q Consensus 140 I~~sDPvary~Glk~Gd-VVKI~R~ 163 (177)
+..++-+|+.||+.+|+ |++|.|-
T Consensus 19 ~~a~~~ia~~L~l~~~~~v~~i~Rl 43 (152)
T 2ogg_A 19 EPPSELIQKQLRANLDDDIWEVIRS 43 (152)
T ss_dssp ECCCHHHHHHHTCCTTCCEEEEEEE
T ss_pred EcCCHHHHHhcCCCCCCeEEEEEEE
Confidence 45567799999999996 8888774
No 31
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=33.53 E-value=16 Score=28.26 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=20.4
Q ss_pred CcccCChhhhhh-CCCCCCEEEEEecCC
Q 030447 139 RMLKKDAIAQYY-GLERGQVVKVTYSGE 165 (177)
Q Consensus 139 rI~~sDPvary~-Glk~GdVVKI~R~Se 165 (177)
+|+..-|+++.| |.+.||.|.+.-++.
T Consensus 119 ~IS~~SPlG~ALlGk~~GD~v~v~~p~G 146 (158)
T 1grj_A 119 LISVNSPIARGLIGKEEDDVVVIKTPGG 146 (158)
T ss_dssp EEESSSHHHHHHTTCBTTCEECC-----
T ss_pred EEcCCCHHHHHHcCCCCCCEEEEEcCCC
Confidence 799999999875 999999999987753
No 32
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A
Probab=33.17 E-value=26 Score=22.03 Aligned_cols=16 Identities=13% Similarity=0.304 Sum_probs=14.1
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|++++
T Consensus 37 eLsf~~Gd~i~v~~~~ 52 (62)
T 1g2b_A 37 EVTMKKGDILTLLNST 52 (62)
T ss_dssp BCCBCTTCEEEEEECC
T ss_pred ccCCCCCCEEEEEEec
Confidence 5788999999999985
No 33
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=32.83 E-value=28 Score=22.03 Aligned_cols=20 Identities=30% Similarity=0.639 Sum_probs=16.7
Q ss_pred ChhhhhhCCCCCCEEEEEec
Q 030447 144 DAIAQYYGLERGQVVKVTYS 163 (177)
Q Consensus 144 DPvary~Glk~GdVVKI~R~ 163 (177)
-.+.+.+|+++||.|.|.-.
T Consensus 18 k~ir~~lgi~~Gd~v~i~~~ 37 (53)
T 2l66_A 18 AKVRQKFQIKEGDLVKVTFD 37 (53)
T ss_dssp HHHHHHSCCCTTCEEEEEEC
T ss_pred HHHHHHcCcCCCCEEEEEEE
Confidence 35778999999999999764
No 34
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=32.49 E-value=20 Score=24.37 Aligned_cols=20 Identities=15% Similarity=0.222 Sum_probs=14.7
Q ss_pred CcccCChhhhhhCCCCCCEEEE
Q 030447 139 RMLKKDAIAQYYGLERGQVVKV 160 (177)
Q Consensus 139 rI~~sDPvary~Glk~GdVVKI 160 (177)
.+...-|.++ |+++||+|-=
T Consensus 49 ~V~~~spA~~--gL~~GD~I~~ 68 (103)
T 1n7t_A 49 RVQPEGPASK--LLQPGDKIIQ 68 (103)
T ss_dssp CBSSSSTTSS--SCCTTCEEEE
T ss_pred EECCCCchHH--CCCCCCEEEE
Confidence 3455567777 9999998753
No 35
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Probab=32.02 E-value=28 Score=21.44 Aligned_cols=16 Identities=6% Similarity=0.138 Sum_probs=14.1
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+.++
T Consensus 17 eLs~~~Gd~i~v~~~~ 32 (58)
T 2bz8_A 17 ELTISVGEIITNIRKE 32 (58)
T ss_dssp BCCBCTTCEEEEEECC
T ss_pred EeeECCCCEEEEEEeC
Confidence 5789999999999875
No 36
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=31.99 E-value=33 Score=27.01 Aligned_cols=29 Identities=17% Similarity=0.078 Sum_probs=20.5
Q ss_pred CChhhhhh---CCCCCCEEEEEecCCCCccceEEE
Q 030447 143 KDAIAQYY---GLERGQVVKVTYSGEITESHVTYR 174 (177)
Q Consensus 143 sDPvary~---Glk~GdVVKI~R~SetaG~~v~YR 174 (177)
+..+.++| |+.||..|+|+++. |..+.++
T Consensus 177 ~~~~~~~L~~~Gi~pG~~v~v~~~~---~~~~~v~ 208 (230)
T 1fx7_A 177 DIDLITRLKDAGVVPNARVTVETTP---GGGVTIV 208 (230)
T ss_dssp CHHHHHHHHHTTCCTTCEEEEEECT---TSCEEEE
T ss_pred CHHHHHHHHHCCCCCCCEEEEEEcC---CCeEEEE
Confidence 33455666 99999999999874 5455554
No 37
>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=31.88 E-value=50 Score=24.64 Aligned_cols=53 Identities=15% Similarity=0.213 Sum_probs=31.3
Q ss_pred CceecCHHHHHHHHhhcCCCcCC--CCCcccCChh------hhhhCCCCCCEEEEEecCCC
Q 030447 114 KHQVLTDQEKEKLLKKYSIEEKQ--LPRMLKKDAI------AQYYGLERGQVVKVTYSGEI 166 (177)
Q Consensus 114 kH~vLs~eEk~~lL~~y~i~~~Q--LPrI~~sDPv------ary~Glk~GdVVKI~R~Set 166 (177)
|-...-+.|-+++-++|+++-.. |=...+.=+. ...|.+++|+++.||+..+.
T Consensus 14 ~~~~~~ek~eke~rkKFk~~G~~~vl~~~~a~~~f~~~k~g~~DLpfkkGE~LeVI~~~e~ 74 (102)
T 1ri9_A 14 KKLKKQEKEEKDFRKKFKYDGEIRVLYSTKVTTSITSKKWGTRDLQVKPGESLEVIQTTDD 74 (102)
T ss_dssp ------CHHHHHHHHHTCCCSCCCCSSCCBCCTTSCSSCCCTTBCCCCTTCBCEEEEESSS
T ss_pred hhHHHHHHHHHHHHHHhccCCCceEEEEEEEeeccccccCCcccCCcCCCCEEEEEEeCCC
Confidence 33444556677888999996441 1111111122 46789999999999998764
No 38
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A
Probab=31.68 E-value=30 Score=21.66 Aligned_cols=16 Identities=6% Similarity=0.127 Sum_probs=13.8
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+.++
T Consensus 17 eLs~~~Gd~i~v~~~~ 32 (62)
T 2j6f_A 17 ELTIRVGEIIRNVKKL 32 (62)
T ss_dssp BCCBCTTCEEEEEEEC
T ss_pred CcCCcCCCEEEEEEec
Confidence 5789999999999873
No 39
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=31.65 E-value=35 Score=23.49 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=19.1
Q ss_pred hhhhCCCCCCEEEEEecCCCCc
Q 030447 147 AQYYGLERGQVVKVTYSGEITE 168 (177)
Q Consensus 147 ary~Glk~GdVVKI~R~SetaG 168 (177)
..+||+..|+.|.|+-..+.+|
T Consensus 76 L~~y~i~~G~~I~V~d~~p~s~ 97 (97)
T 1wjn_A 76 LQFYSVENGDCLLVRWSGPSSG 97 (97)
T ss_dssp SGGGTCCTTCEEEEECCSSCCC
T ss_pred HhhcCCCCCCEEEEEecCCCCC
Confidence 5799999999999988777765
No 40
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A
Probab=31.58 E-value=29 Score=21.25 Aligned_cols=17 Identities=12% Similarity=0.370 Sum_probs=14.2
Q ss_pred hhCCCCCCEEEEEecCC
Q 030447 149 YYGLERGQVVKVTYSGE 165 (177)
Q Consensus 149 y~Glk~GdVVKI~R~Se 165 (177)
.+.+++||+|.|..++.
T Consensus 17 eLs~~~Gd~i~v~~~~~ 33 (57)
T 1cka_A 17 DLPFKKGDILRIRDKPE 33 (57)
T ss_dssp BCCBCTTCEEEEEECSS
T ss_pred CCCCCCCCEEEEEEecC
Confidence 47799999999998753
No 41
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}
Probab=31.54 E-value=33 Score=21.87 Aligned_cols=16 Identities=13% Similarity=0.117 Sum_probs=14.0
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+.++
T Consensus 22 eLs~~~Gd~i~v~~~~ 37 (71)
T 2jt4_A 22 ELTIKSGDKVYILDDK 37 (71)
T ss_dssp BCCBCTTCEEEEEESS
T ss_pred cccCCCCCEEEEEECC
Confidence 5778999999999875
No 42
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=31.32 E-value=19 Score=24.74 Aligned_cols=20 Identities=10% Similarity=0.172 Sum_probs=14.0
Q ss_pred cccCChhhhhhCCCCCCEEEEE
Q 030447 140 MLKKDAIAQYYGLERGQVVKVT 161 (177)
Q Consensus 140 I~~sDPvary~Glk~GdVVKI~ 161 (177)
+...-|.++ |+++||+|-=+
T Consensus 8 V~~~spA~~--GL~~GD~I~~I 27 (91)
T 2kjp_A 8 VVENMPAKG--KIEVGDKIISA 27 (91)
T ss_dssp CCCSSCCSS--CCCSSCEEEEE
T ss_pred ECCCChHHH--cCCCCCEEEEE
Confidence 444557666 99999987644
No 43
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=31.01 E-value=30 Score=21.18 Aligned_cols=17 Identities=6% Similarity=0.114 Sum_probs=14.8
Q ss_pred hhCCCCCCEEEEEecCC
Q 030447 149 YYGLERGQVVKVTYSGE 165 (177)
Q Consensus 149 y~Glk~GdVVKI~R~Se 165 (177)
.+.+++||+|.|+.+..
T Consensus 17 eLs~~~Gd~i~v~~~~~ 33 (58)
T 1zuu_A 17 EITITPGDKISLVARDT 33 (58)
T ss_dssp BCCBCTTCCEEEEECCS
T ss_pred cccCCCCCEEEEeEcCC
Confidence 57889999999998765
No 44
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Probab=30.81 E-value=30 Score=21.26 Aligned_cols=16 Identities=0% Similarity=-0.294 Sum_probs=14.0
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+.+.
T Consensus 16 eLs~~~Gd~i~v~~~~ 31 (58)
T 1jo8_A 16 ELTFVENDKIINIEFV 31 (58)
T ss_dssp BCCBCTTCEEEEEECC
T ss_pred CcccCCCCEEEEEEec
Confidence 5789999999999874
No 45
>3cnv_A Putative GNTR-family transcriptional regulator; structural genomics, bordet bronchiseptica, PSI-2, protein structure initiative; HET: MSE FLC; 2.00A {Bordetella bronchiseptica RB50} SCOP: d.190.1.2
Probab=30.72 E-value=24 Score=25.22 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=18.6
Q ss_pred cccCChhhhhhCCCCCC-EEEEEec
Q 030447 140 MLKKDAIAQYYGLERGQ-VVKVTYS 163 (177)
Q Consensus 140 I~~sDPvary~Glk~Gd-VVKI~R~ 163 (177)
+..++-+|+.||+.+|+ |++|.|-
T Consensus 29 ~~a~~~ia~~L~l~~~~~v~~i~Rl 53 (162)
T 3cnv_A 29 LRAPAEIARALELRAGETVVTIRRQ 53 (162)
T ss_dssp EECCHHHHHHHTCCTTCEEEEEEEE
T ss_pred ECCCHHHHHHcCCCCCCEEEEEEEE
Confidence 44556689999999997 7888774
No 46
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A
Probab=30.69 E-value=27 Score=21.27 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=14.8
Q ss_pred hhhCCCCCCEEEEEecCC
Q 030447 148 QYYGLERGQVVKVTYSGE 165 (177)
Q Consensus 148 ry~Glk~GdVVKI~R~Se 165 (177)
..|.+++||+|.|+.++.
T Consensus 16 ~eLs~~~Gd~i~v~~~~~ 33 (58)
T 1zuy_A 16 SELPLKKGDVIYITREEP 33 (58)
T ss_dssp TBCCBCTTCEEEEEEECT
T ss_pred CcCCCCCCCEEEEEEecC
Confidence 357899999999998763
No 47
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}
Probab=30.55 E-value=22 Score=22.81 Aligned_cols=16 Identities=44% Similarity=0.480 Sum_probs=14.3
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+.++
T Consensus 24 eLs~~~Gd~i~v~~~~ 39 (67)
T 2eyx_A 24 ALALEVGELVKVTKIN 39 (67)
T ss_dssp BCCBCSSEEEEEEEEC
T ss_pred ccccCCCCEEEEEEec
Confidence 6889999999999875
No 48
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=30.36 E-value=21 Score=24.37 Aligned_cols=21 Identities=24% Similarity=0.234 Sum_probs=14.4
Q ss_pred cccCChhhhhhCCCCCCEEEEEe
Q 030447 140 MLKKDAIAQYYGLERGQVVKVTY 162 (177)
Q Consensus 140 I~~sDPvary~Glk~GdVVKI~R 162 (177)
+...-|.++ |+++||+|.=+-
T Consensus 12 V~~~spA~~--GL~~GD~Il~In 32 (94)
T 2kl1_A 12 VLPNMPAAG--RLEAGDRIAAID 32 (94)
T ss_dssp CCTTSTTBT--TBCTTCEEEEET
T ss_pred ECCCChHHh--CCCCCCEEEEEC
Confidence 444556665 999999886543
No 49
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A
Probab=29.89 E-value=34 Score=21.13 Aligned_cols=16 Identities=13% Similarity=0.243 Sum_probs=13.7
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.+.+++||+|.|+.+.
T Consensus 21 eLs~~~Gd~i~v~~~~ 36 (63)
T 3eg3_A 21 TLSITKGEKLRVLGYN 36 (63)
T ss_dssp BCCBCTTCEEEEEEEC
T ss_pred ccCCCCCCEEEEEEeC
Confidence 4789999999999854
No 50
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=29.75 E-value=28 Score=23.87 Aligned_cols=20 Identities=15% Similarity=0.122 Sum_probs=13.5
Q ss_pred cccCChhhhhhCCCCCCEEEEE
Q 030447 140 MLKKDAIAQYYGLERGQVVKVT 161 (177)
Q Consensus 140 I~~sDPvary~Glk~GdVVKI~ 161 (177)
+...-|.+ . |+++||+|.=+
T Consensus 14 V~~~spA~-~-GL~~GD~I~~I 33 (100)
T 3i18_A 14 VKDDVPAA-D-VLHAGDLITEI 33 (100)
T ss_dssp ECTTSGGG-G-TCCTTCEEEEE
T ss_pred eCCCCchH-H-CCCCCCEEEEE
Confidence 33445766 4 99999987543
No 51
>2k5f_A Ferrous iron transport protein A; SH3-like, alpha+beta, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum}
Probab=28.99 E-value=45 Score=24.07 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=19.3
Q ss_pred hhCCCCCCEEEEEecCCCCccceEEE
Q 030447 149 YYGLERGQVVKVTYSGEITESHVTYR 174 (177)
Q Consensus 149 y~Glk~GdVVKI~R~SetaG~~v~YR 174 (177)
.+|+.+|..|+|+++++..|. +.++
T Consensus 29 ~lGl~pG~~V~Vv~~~P~ggp-i~V~ 53 (105)
T 2k5f_A 29 DLGLVRGAKLKVLRFAPLGDP-IEVN 53 (105)
T ss_dssp HHTCSTTCEEEEEEECSSSCS-EEEE
T ss_pred HcCCCCCCEEEEEEECCCCCC-EEEE
Confidence 469999999999999876654 4443
No 52
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A
Probab=28.92 E-value=29 Score=21.08 Aligned_cols=16 Identities=25% Similarity=0.138 Sum_probs=14.1
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+.+.
T Consensus 17 eLs~~~Gd~i~v~~~~ 32 (58)
T 4e6r_A 17 ELSLVXGSRVTVMEXC 32 (58)
T ss_dssp BCCBCTTCEEEEEEEC
T ss_pred EeeEeCCCEEEEeEcC
Confidence 4889999999999876
No 53
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B
Probab=28.90 E-value=91 Score=26.92 Aligned_cols=41 Identities=22% Similarity=0.529 Sum_probs=31.2
Q ss_pred ecCHHHHHHHHhhcCCCcCCCCCcccCChhhhhhCCCCCCEEEEE----ecCCCCccceEEEEeC
Q 030447 117 VLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVT----YSGEITESHVTYRCVW 177 (177)
Q Consensus 117 vLs~eEk~~lL~~y~i~~~QLPrI~~sDPvary~Glk~GdVVKI~----R~SetaG~~v~YR~V~ 177 (177)
-+.+||-+.-|.|+. +|+ |+ -+++.|++ |+ +||+++|++.|
T Consensus 178 ~~deE~l~~~l~k~~-----~P~-----------gl-N~~~f~l~ltnrRK---SGRsl~y~f~i 222 (270)
T 4a8j_B 178 TLDTEEVSELLNEFR-----IPR-----------GL-NNDIFQLRLVNKRK---SGRSLEYDFIV 222 (270)
T ss_dssp SCCHHHHHHHHHTTC-----CCS-----------SC-SCSEEEEEEEEECT---TSCEEEEEEEE
T ss_pred CccHHHHHHHhhhee-----ccc-----------cc-CCCeEEEEEEeccc---cCcceEEEEEE
Confidence 567888999999988 455 66 56777763 44 69999999864
No 54
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A
Probab=28.82 E-value=34 Score=20.90 Aligned_cols=16 Identities=19% Similarity=0.414 Sum_probs=14.0
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.+.+++||+|.|+.+.
T Consensus 18 eLs~~~Gd~i~v~~~~ 33 (58)
T 1sem_A 18 ELAFKRGDVITLINKD 33 (58)
T ss_dssp BCCBCTTCEEEEEECS
T ss_pred CcCCCCCCEEEEEEec
Confidence 5789999999999874
No 55
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Probab=28.58 E-value=30 Score=21.32 Aligned_cols=16 Identities=6% Similarity=0.007 Sum_probs=13.7
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.+.+++||+|.|+.++
T Consensus 19 eLs~~~Gd~i~v~~~~ 34 (60)
T 2x3w_D 19 ELSFKAGDELTKLGEE 34 (60)
T ss_dssp BCCBCTTCEEEECSCC
T ss_pred cccCCCCCEEEEEEcc
Confidence 5788999999998864
No 56
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A
Probab=28.58 E-value=33 Score=22.53 Aligned_cols=17 Identities=12% Similarity=0.376 Sum_probs=14.6
Q ss_pred hhhCCCCCCEEEEEecC
Q 030447 148 QYYGLERGQVVKVTYSG 164 (177)
Q Consensus 148 ry~Glk~GdVVKI~R~S 164 (177)
..|.+++||+|.|+.+.
T Consensus 26 ~eLs~~~Gd~i~v~~~~ 42 (73)
T 2ebp_A 26 DSLKLKKGDIIDIISKP 42 (73)
T ss_dssp SBCCBCSSCEEEEEECC
T ss_pred CccCCCCCCEEEEEEeC
Confidence 36789999999999874
No 57
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1
Probab=28.48 E-value=33 Score=21.96 Aligned_cols=17 Identities=12% Similarity=0.370 Sum_probs=14.2
Q ss_pred hhCCCCCCEEEEEecCC
Q 030447 149 YYGLERGQVVKVTYSGE 165 (177)
Q Consensus 149 y~Glk~GdVVKI~R~Se 165 (177)
.+.+++||+|.|+.++.
T Consensus 19 eLsf~~Gd~i~v~~~~~ 35 (65)
T 1b07_A 19 DLPFKKGDILRIRDKPE 35 (65)
T ss_dssp BCCBCTTCEEEEEECSS
T ss_pred ccCCcCCCEEEEEEecC
Confidence 46789999999998753
No 58
>2ffj_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.45A {Archaeoglobus fulgidus} SCOP: e.50.1.1
Probab=28.40 E-value=19 Score=30.49 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=18.4
Q ss_pred cccCChhhhhhCCCCCCEEEE
Q 030447 140 MLKKDAIAQYYGLERGQVVKV 160 (177)
Q Consensus 140 I~~sDPvary~Glk~GdVVKI 160 (177)
..+.|+||+.+|+.+|++|-+
T Consensus 277 ~~Kc~vva~~lG~~~g~~v~~ 297 (300)
T 2ffj_A 277 TAKCEPVARDIGVNVGDMVAK 297 (300)
T ss_dssp ECCSHHHHHHHTSCTTCEEEE
T ss_pred HhCCHHHHHHhCCCCCCeEEE
Confidence 468999999999999999853
No 59
>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}
Probab=28.18 E-value=22 Score=23.23 Aligned_cols=17 Identities=6% Similarity=0.171 Sum_probs=14.3
Q ss_pred hhCCCCCCEEEEEecCC
Q 030447 149 YYGLERGQVVKVTYSGE 165 (177)
Q Consensus 149 y~Glk~GdVVKI~R~Se 165 (177)
.|.+++||+|.|+.++.
T Consensus 20 ~Ls~~~Gd~i~v~~~~~ 36 (60)
T 2lx7_A 20 GLRFAAGELITLLQVPD 36 (60)
T ss_dssp CCCCCTTCEEEBSCCCT
T ss_pred CccCCCCCEEEEeEecC
Confidence 38899999999987653
No 60
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Probab=27.97 E-value=34 Score=21.05 Aligned_cols=17 Identities=12% Similarity=0.317 Sum_probs=14.6
Q ss_pred hhhCCCCCCEEEEEecC
Q 030447 148 QYYGLERGQVVKVTYSG 164 (177)
Q Consensus 148 ry~Glk~GdVVKI~R~S 164 (177)
..+.+++||+|.|+.++
T Consensus 21 ~eLs~~~Gd~i~v~~~~ 37 (62)
T 3ngp_A 21 RELTVKKGDILTLLNST 37 (62)
T ss_dssp TBCCBCTTCEEEEEECC
T ss_pred CCccCCCCCEEEEeEec
Confidence 35789999999999876
No 61
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A
Probab=27.97 E-value=34 Score=21.35 Aligned_cols=16 Identities=0% Similarity=-0.066 Sum_probs=14.2
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+.++
T Consensus 25 eLs~~~Gd~i~v~~~~ 40 (65)
T 3ulr_B 25 EISFDPDDIITNIEMI 40 (65)
T ss_dssp BCCBCTTCEEEEEECC
T ss_pred EeeEecCCEEEEEEec
Confidence 5889999999999876
No 62
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1
Probab=27.94 E-value=36 Score=21.55 Aligned_cols=17 Identities=12% Similarity=0.304 Sum_probs=14.0
Q ss_pred hhCCCCCCEEEEEecCC
Q 030447 149 YYGLERGQVVKVTYSGE 165 (177)
Q Consensus 149 y~Glk~GdVVKI~R~Se 165 (177)
.|.+++||+|.|+.++.
T Consensus 5 eLs~~~Gd~i~v~~~~~ 21 (63)
T 1tuc_A 5 EVTMKKGDILTLLNSTN 21 (63)
T ss_dssp CCCBCTTCEEEEEECCS
T ss_pred ccCCCCCCEEEEEEecC
Confidence 36789999999998763
No 63
>3ddv_A Transcriptional regulator (GNTR family); structure genomics, MCSG, structural genomics, protein structure initiative; 2.65A {Enterococcus faecalis} SCOP: d.190.1.2
Probab=27.90 E-value=32 Score=24.57 Aligned_cols=25 Identities=4% Similarity=-0.005 Sum_probs=18.6
Q ss_pred CcccCChhhhhhCCCCCC-EEEEEec
Q 030447 139 RMLKKDAIAQYYGLERGQ-VVKVTYS 163 (177)
Q Consensus 139 rI~~sDPvary~Glk~Gd-VVKI~R~ 163 (177)
.+..+.-+|+.||+.+|+ |++|.|-
T Consensus 15 ~~~a~~~ia~~L~l~~g~~v~~i~Rl 40 (145)
T 3ddv_A 15 VAKPSSSEMEKLQLGPEDSILRMERI 40 (145)
T ss_dssp EECCCHHHHHHHTCCTTSCEEEEEEE
T ss_pred EEcCCHHHHHhCCcCCCCEEEEEEEE
Confidence 345666789999999986 6777664
No 64
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=27.80 E-value=93 Score=21.04 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=27.7
Q ss_pred HHHHHhhcCCCcCCC-----CCcccCChhhhhhCCCCCCEEEEEecCCCCccceEEEEe
Q 030447 123 KEKLLKKYSIEEKQL-----PRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 176 (177)
Q Consensus 123 k~~lL~~y~i~~~QL-----PrI~~sDPvary~Glk~GdVVKI~R~SetaG~~v~YR~V 176 (177)
|+++-++.++...+. .+++.+|-....||++.|+.|.+.-+. ..|.-+.+|.|
T Consensus 27 K~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~-~gG~~i~~~~v 84 (98)
T 1yx5_B 27 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL-RGGRDPNSSSV 84 (98)
T ss_dssp HHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC-CCC--------
T ss_pred HHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC-CCCCcCccccC
Confidence 344444555544332 345556656778899999999886553 34556666543
No 65
>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Probab=27.80 E-value=37 Score=20.71 Aligned_cols=16 Identities=25% Similarity=0.493 Sum_probs=14.0
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.+.+++||+|.|+.+.
T Consensus 18 eLs~~~Gd~i~v~~~~ 33 (58)
T 2vwf_A 18 ELGFRRGDFIHVMDNS 33 (58)
T ss_dssp BCCBCTTCEEEEEECC
T ss_pred CcCCCCCCEEEEEEcC
Confidence 5789999999999874
No 66
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Probab=27.72 E-value=33 Score=21.17 Aligned_cols=18 Identities=28% Similarity=0.446 Sum_probs=14.7
Q ss_pred hhhCCCCCCEEEEEecCC
Q 030447 148 QYYGLERGQVVKVTYSGE 165 (177)
Q Consensus 148 ry~Glk~GdVVKI~R~Se 165 (177)
..|.+++||+|.|+.+..
T Consensus 19 ~eLs~~~Gd~i~v~~~~~ 36 (59)
T 2g6f_X 19 DELSFSKGDVIHVTRVEE 36 (59)
T ss_dssp TBCCBCTTCEEEEEEECT
T ss_pred CCcCCCCCCEEEEEEecC
Confidence 357799999999998653
No 67
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A
Probab=27.53 E-value=33 Score=21.87 Aligned_cols=17 Identities=41% Similarity=0.475 Sum_probs=14.5
Q ss_pred hhhCCCCCCEEEEEecC
Q 030447 148 QYYGLERGQVVKVTYSG 164 (177)
Q Consensus 148 ry~Glk~GdVVKI~R~S 164 (177)
..|.+++||+|.|+.+.
T Consensus 18 ~eLsf~~Gd~i~v~~~~ 34 (67)
T 2bzy_A 18 TALALEVGDIVKVTRMN 34 (67)
T ss_dssp TBCCBCTTCEEEEEEEC
T ss_pred CccccCCCCEEEEEEec
Confidence 46889999999998875
No 68
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Probab=27.52 E-value=33 Score=21.38 Aligned_cols=16 Identities=19% Similarity=0.106 Sum_probs=13.5
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+.+.
T Consensus 19 eLs~~~Gd~i~v~~~~ 34 (62)
T 2fpe_A 19 ELELEVDDPLLVELQA 34 (62)
T ss_dssp BCCBCTTCEEEEEEEC
T ss_pred cCcCCCCCEEEEEEec
Confidence 4789999999998764
No 69
>2z0x_A Putative uncharacterized protein TTHA1699; protein-cyssa complex, translation, structural genomics, NPPSFA; HET: 5CA; 1.64A {Thermus thermophilus} PDB: 2z0k_A* 2cx5_A* 3rij_A 3ri0_A
Probab=27.00 E-value=29 Score=25.72 Aligned_cols=43 Identities=28% Similarity=0.329 Sum_probs=34.3
Q ss_pred cCHHHHHHHHhhcCCCc-C--CCCC-cccCChhhhhhCCCCCCEEEE
Q 030447 118 LTDQEKEKLLKKYSIEE-K--QLPR-MLKKDAIAQYYGLERGQVVKV 160 (177)
Q Consensus 118 Ls~eEk~~lL~~y~i~~-~--QLPr-I~~sDPvary~Glk~GdVVKI 160 (177)
++.+...++|++.+|.- + ..|. ....+-+|.++|..+++++|-
T Consensus 5 m~~~~~~~~L~~~~i~~~~~~~~p~~~~t~~e~a~~lg~~~~~~~Kt 51 (158)
T 2z0x_A 5 PSARRVQGALETRGFGHLKVVELPASTRTAKEAAQAVGAEVGQIVKS 51 (158)
T ss_dssp HHHHHHHHHHHHTTCTTSCEEECSSCCSSHHHHHHHHTCCGGGEEEE
T ss_pred hhHHHHHHHHHHcCCCCCEEEEcCCCCCCHHHHHHHcCCCHHHEEEE
Confidence 45577889999999876 3 4564 666677999999999999984
No 70
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=26.93 E-value=50 Score=21.45 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=14.2
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+.++
T Consensus 26 eLs~~~Gd~i~v~~~~ 41 (77)
T 2enm_A 26 ELTVTEGEIITVTNPN 41 (77)
T ss_dssp BCCCCTTCEEEEEESC
T ss_pred eecCCCCCEEEEeEcc
Confidence 5789999999999875
No 71
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A
Probab=26.81 E-value=39 Score=20.96 Aligned_cols=16 Identities=0% Similarity=0.063 Sum_probs=14.0
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+.+.
T Consensus 19 eLs~~~Gd~i~v~~~~ 34 (61)
T 1y0m_A 19 ELTFTKSAIIQNVEKQ 34 (61)
T ss_dssp BCCBCTTCEEEEEECC
T ss_pred CcCCcCCCEEEEEEec
Confidence 5789999999999875
No 72
>3ic8_A Uncharacterized GST-like proteinprotein; glutathione, transferase, PSI, MCSG, structural genomics; 2.40A {Pseudomonas syringae PV}
Probab=26.78 E-value=1e+02 Score=24.58 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=31.3
Q ss_pred CCceecCHHHHHHHHhhcCCCcCCCCCcccCChhhhhhCCCCCCEEEEEecC
Q 030447 113 PKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 164 (177)
Q Consensus 113 PkH~vLs~eEk~~lL~~y~i~~~QLPrI~~sDPvary~Glk~GdVVKI~R~S 164 (177)
++...++.+|+.++.++=. +...+.-...| ..|++.||+|.|.-.+
T Consensus 221 ~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~d----~~g~~~G~~V~v~p~d 266 (310)
T 3ic8_A 221 GSLSDLSSAAAIEIASNAT--PAPLPDETFID----PNGFKAGDKVAIAAVD 266 (310)
T ss_dssp CEEEECCHHHHHHHHHHSC--CCCCCCCCCCC----TTCCCTTCEEEEEESS
T ss_pred CCcccCCHHHHHHHHhcCC--CCCCCcccccc----cccCCCCCEEEEeecc
Confidence 5777899999998876522 23333333333 4799999999997553
No 73
>2g8l_A 287AA long hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.04A {Pyrococcus horikoshii} SCOP: e.50.1.1
Probab=26.77 E-value=30 Score=29.40 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=20.4
Q ss_pred cccCChhhhhhCCCCCCEEEEEec
Q 030447 140 MLKKDAIAQYYGLERGQVVKVTYS 163 (177)
Q Consensus 140 I~~sDPvary~Glk~GdVVKI~R~ 163 (177)
.-+.||||+.+|+..|++|-+-+.
T Consensus 273 ~~Kc~~va~~lG~~~g~~V~~~~~ 296 (299)
T 2g8l_A 273 KAKCPAVARELKVPKGALVCMRNK 296 (299)
T ss_dssp ECCSHHHHHHHTSCTTCEEEEECC
T ss_pred hcCCHHHHHHhCCCCCCEEEEecc
Confidence 457999999999999999976553
No 74
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A
Probab=26.68 E-value=40 Score=20.63 Aligned_cols=17 Identities=35% Similarity=0.495 Sum_probs=14.4
Q ss_pred hhhCCCCCCEEEEEecC
Q 030447 148 QYYGLERGQVVKVTYSG 164 (177)
Q Consensus 148 ry~Glk~GdVVKI~R~S 164 (177)
..+.+++||+|.|+.++
T Consensus 16 ~eLs~~~Gd~i~v~~~~ 32 (58)
T 1uti_A 16 DELGFRSGEVVEVLDSS 32 (58)
T ss_dssp TBCCBCTTCEEEEEECC
T ss_pred CCCCCCCCCEEEEEEEC
Confidence 36789999999999874
No 75
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.66 E-value=44 Score=22.26 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=14.7
Q ss_pred hhCCCCCCEEEEEecCCC
Q 030447 149 YYGLERGQVVKVTYSGEI 166 (177)
Q Consensus 149 y~Glk~GdVVKI~R~Set 166 (177)
.|.+++||+|.|+.++..
T Consensus 33 eLsf~~Gd~i~v~~~~~~ 50 (81)
T 1x6g_A 33 ELAFRKGDVVTILEACEN 50 (81)
T ss_dssp CCCBCTTCEEEEEECCCS
T ss_pred CCCCCCCCEEEEEeccCC
Confidence 367899999999987644
No 76
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.62 E-value=45 Score=21.82 Aligned_cols=19 Identities=11% Similarity=0.076 Sum_probs=15.8
Q ss_pred hhhhCCCCCCEEEEEecCC
Q 030447 147 AQYYGLERGQVVKVTYSGE 165 (177)
Q Consensus 147 ary~Glk~GdVVKI~R~Se 165 (177)
...|.+++||+|.|+.+..
T Consensus 28 ~~eLsf~~Gd~i~v~~~~~ 46 (76)
T 2csi_A 28 EAELTFCTGDIITVFGEID 46 (76)
T ss_dssp TTSCCCCTTCEEEEESSCC
T ss_pred CCcccCCCCCEEEEeEecC
Confidence 4578899999999998753
No 77
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}
Probab=26.60 E-value=36 Score=21.69 Aligned_cols=16 Identities=13% Similarity=0.310 Sum_probs=14.3
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+.+.
T Consensus 19 eLs~~~Gd~i~v~~~~ 34 (69)
T 1wyx_A 19 ELSFRKGDIMTVLEQD 34 (69)
T ss_dssp BCCBCTTCEEEEEETT
T ss_pred ccCCcCCCEEEEeECC
Confidence 5789999999999986
No 78
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=26.51 E-value=30 Score=23.06 Aligned_cols=15 Identities=20% Similarity=0.337 Sum_probs=11.2
Q ss_pred hhhhCCCCCCEEEEE
Q 030447 147 AQYYGLERGQVVKVT 161 (177)
Q Consensus 147 ary~Glk~GdVVKI~ 161 (177)
|...|+++||+|.=+
T Consensus 32 A~~aGl~~GD~I~~i 46 (87)
T 2i6v_A 32 FESIGLQDGDMAVAL 46 (87)
T ss_dssp HHHTTCCTTCEEEEE
T ss_pred HHHCCCCCCCEEEEE
Confidence 455699999998543
No 79
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}
Probab=26.46 E-value=35 Score=21.95 Aligned_cols=17 Identities=24% Similarity=0.171 Sum_probs=13.9
Q ss_pred hhCCCCCCEEEEEecCC
Q 030447 149 YYGLERGQVVKVTYSGE 165 (177)
Q Consensus 149 y~Glk~GdVVKI~R~Se 165 (177)
.|.+++||+|.|+....
T Consensus 22 eLs~~~Gd~i~v~~~~~ 38 (71)
T 2fpf_A 22 ELELEVDDPLLVELQAE 38 (71)
T ss_dssp BCCBCTTCEEEEEEECT
T ss_pred cccCcCCcEEEEeEecC
Confidence 47799999999987653
No 80
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=26.46 E-value=42 Score=22.19 Aligned_cols=24 Identities=4% Similarity=0.148 Sum_probs=18.4
Q ss_pred ccCChhhhhhCCCCCCEEEEEecC
Q 030447 141 LKKDAIAQYYGLERGQVVKVTYSG 164 (177)
Q Consensus 141 ~~sDPvary~Glk~GdVVKI~R~S 164 (177)
----.+.+.+|+++||.|.|.-..
T Consensus 25 tIPkeiR~~Lgi~~Gd~l~i~~~~ 48 (59)
T 1yfb_A 25 VIPIELRRTLGIAEKDALEIYVDD 48 (59)
T ss_dssp ECCHHHHHHTTCCTTCEEEEEEET
T ss_pred EeCHHHHHHcCCCCCCEEEEEEEC
Confidence 333457889999999999997643
No 81
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Probab=26.43 E-value=39 Score=21.08 Aligned_cols=18 Identities=28% Similarity=0.446 Sum_probs=14.8
Q ss_pred hhhCCCCCCEEEEEecCC
Q 030447 148 QYYGLERGQVVKVTYSGE 165 (177)
Q Consensus 148 ry~Glk~GdVVKI~R~Se 165 (177)
..|.+++||+|.|+....
T Consensus 21 ~eLs~~~Gd~i~v~~~~~ 38 (64)
T 2ak5_A 21 DELSFSKGDVIHVTRVEE 38 (64)
T ss_dssp TBCCBCTTCEEEEEECCT
T ss_pred CcccCCCCCEEEEeEecC
Confidence 357899999999998753
No 82
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=26.42 E-value=26 Score=26.30 Aligned_cols=21 Identities=14% Similarity=0.221 Sum_probs=15.4
Q ss_pred CcccCChhhhhhCCCCCCEEEEE
Q 030447 139 RMLKKDAIAQYYGLERGQVVKVT 161 (177)
Q Consensus 139 rI~~sDPvary~Glk~GdVVKI~ 161 (177)
++...-|.++ ||++||+|-=+
T Consensus 30 ~v~~~spA~~--gl~~GD~I~~v 50 (195)
T 2qbw_A 30 RVQPEGPASK--LLQPGDKIIQA 50 (195)
T ss_dssp EECTTSTTTT--TCCTTCEEEEE
T ss_pred EECCCChHHh--CCCCCCEEEEE
Confidence 3455677888 99999987533
No 83
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Probab=26.39 E-value=40 Score=20.91 Aligned_cols=16 Identities=13% Similarity=0.304 Sum_probs=14.0
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+.+.
T Consensus 17 eLs~~~Gd~i~v~~~~ 32 (65)
T 2oaw_A 17 EVTMKKGDILTLLNST 32 (65)
T ss_dssp BCCBCTTCEEEEEECC
T ss_pred CCCCCCCCEEEEEEcC
Confidence 5789999999999875
No 84
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1
Probab=26.33 E-value=40 Score=21.04 Aligned_cols=16 Identities=13% Similarity=0.283 Sum_probs=13.9
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+.+.
T Consensus 21 eLs~~~Gd~i~v~~~~ 36 (62)
T 1uj0_A 21 ELTFKHGELITVLDDS 36 (62)
T ss_dssp BCCBCTTCEEEEEECC
T ss_pred CcCCCCCCEEEEEEeC
Confidence 5789999999999864
No 85
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}
Probab=26.24 E-value=36 Score=21.61 Aligned_cols=17 Identities=18% Similarity=0.548 Sum_probs=14.5
Q ss_pred hhhCCCCCCEEEEEecC
Q 030447 148 QYYGLERGQVVKVTYSG 164 (177)
Q Consensus 148 ry~Glk~GdVVKI~R~S 164 (177)
..|.+++||+|.|+.++
T Consensus 21 ~eLs~~~Gd~i~v~~~~ 37 (69)
T 4esr_A 21 DELTIHRGDIIRVFFKD 37 (69)
T ss_dssp TBCCBCTTCEEEEEEEC
T ss_pred CcCCCCCCCEEEEEEec
Confidence 35789999999999876
No 86
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A
Probab=26.06 E-value=38 Score=21.07 Aligned_cols=16 Identities=19% Similarity=0.482 Sum_probs=14.0
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.+.+++||+|.|+.++
T Consensus 22 eLs~~~Gd~i~v~~~~ 37 (62)
T 2iim_A 22 DLGFEKGEQLRILEQS 37 (62)
T ss_dssp BCCBCTTCEEEEEECC
T ss_pred CcCCCCCCEEEEEEcC
Confidence 5778999999999875
No 87
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}
Probab=26.02 E-value=37 Score=21.02 Aligned_cols=17 Identities=0% Similarity=0.190 Sum_probs=14.5
Q ss_pred hhhCCCCCCEEEEEecC
Q 030447 148 QYYGLERGQVVKVTYSG 164 (177)
Q Consensus 148 ry~Glk~GdVVKI~R~S 164 (177)
..+.+++||+|.|+.+.
T Consensus 20 ~eLs~~~Gd~i~v~~~~ 36 (60)
T 2xmf_A 20 DELSFNANDIIDIIKED 36 (60)
T ss_dssp TBCCBCTTCEEEEEEEC
T ss_pred CCcCCCCCCEEEEEEec
Confidence 35789999999999875
No 88
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Probab=25.93 E-value=40 Score=21.63 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=13.9
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+...
T Consensus 17 eLs~~~Gd~i~v~~~~ 32 (65)
T 2nwm_A 17 ELTLQKGDIVYIHKEV 32 (65)
T ss_dssp BCCBCTTCEEEEEECC
T ss_pred ccCCcCCCEEEEEEec
Confidence 5789999999999874
No 89
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Probab=25.85 E-value=40 Score=21.39 Aligned_cols=16 Identities=31% Similarity=0.258 Sum_probs=13.9
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.+.+++||+|.|+.++
T Consensus 18 eLs~~~Gd~i~v~~~~ 33 (67)
T 1gl5_A 18 DLRLERGQEYIILEKN 33 (67)
T ss_dssp BCCBCTTCEEEEEECS
T ss_pred eecCCcCCEEEEEEcc
Confidence 5778999999999875
No 90
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}
Probab=25.82 E-value=44 Score=21.60 Aligned_cols=16 Identities=0% Similarity=0.026 Sum_probs=13.8
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+.++
T Consensus 23 eLs~~~Gd~i~v~~~~ 38 (72)
T 2jw4_A 23 ELDIKKNERLWLLDDS 38 (72)
T ss_dssp SCCCCTTCEEEEEECS
T ss_pred cccCCCCCEEEEEECC
Confidence 5789999999999863
No 91
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Probab=25.72 E-value=37 Score=21.61 Aligned_cols=16 Identities=25% Similarity=0.210 Sum_probs=13.7
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+.+.
T Consensus 23 eLsf~~Gd~i~v~~~~ 38 (68)
T 1tg0_A 23 DLNFEKDQEIIVTSVE 38 (68)
T ss_dssp BCCBCTTCEEEEEEEC
T ss_pred CCCCCCCCEEEEEEec
Confidence 5789999999999764
No 92
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A
Probab=25.67 E-value=40 Score=20.79 Aligned_cols=17 Identities=12% Similarity=0.348 Sum_probs=14.5
Q ss_pred hhCCCCCCEEEEEecCC
Q 030447 149 YYGLERGQVVKVTYSGE 165 (177)
Q Consensus 149 y~Glk~GdVVKI~R~Se 165 (177)
.|.+++||+|.|+.++.
T Consensus 19 eLs~~~Gd~i~v~~~~~ 35 (60)
T 1oot_A 19 DLPFRKGDVITILKKSD 35 (60)
T ss_dssp BCCBCTTCEEEEEECCS
T ss_pred EeeEcCCCEEEEEEeCC
Confidence 57799999999998763
No 93
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A
Probab=25.64 E-value=37 Score=22.16 Aligned_cols=16 Identities=0% Similarity=0.026 Sum_probs=14.0
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+.++
T Consensus 20 ELsf~~Gd~i~vl~~~ 35 (67)
T 2b86_A 20 ELDIKKNERLWLLDDS 35 (67)
T ss_dssp SCCBCTTCEEEEEECS
T ss_pred ccccCCCCEEEEEecC
Confidence 5788999999999875
No 94
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=25.58 E-value=36 Score=21.19 Aligned_cols=16 Identities=13% Similarity=0.191 Sum_probs=13.8
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+.+.
T Consensus 21 eLs~~~Gd~i~v~~~~ 36 (62)
T 1k4u_S 21 DLEFQEGDIILVLSKV 36 (62)
T ss_dssp BCCBCSSCEEEEEEES
T ss_pred CccCCCCCEEEEEEeC
Confidence 5788999999999874
No 95
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=25.51 E-value=41 Score=22.01 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=14.3
Q ss_pred hhCCCCCCEEEEEecCC
Q 030447 149 YYGLERGQVVKVTYSGE 165 (177)
Q Consensus 149 y~Glk~GdVVKI~R~Se 165 (177)
.|.+++||+|.|+.+..
T Consensus 23 eLs~~~Gd~i~v~~~~~ 39 (80)
T 1ue9_A 23 QLSLAPGQLILILKKNT 39 (80)
T ss_dssp BCCCCTTCEEEEEEECS
T ss_pred CCCCCCCCEEEEEEecC
Confidence 47899999999998753
No 96
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}
Probab=25.50 E-value=43 Score=20.53 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=13.9
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+.+.
T Consensus 19 eLs~~~Gd~i~v~~~~ 34 (58)
T 1zlm_A 19 ELYFEEGDIIYITDMS 34 (58)
T ss_dssp BCCBCTTCEEEEEECC
T ss_pred CccCCCCCEEEEEEeC
Confidence 5789999999999874
No 97
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.37 E-value=50 Score=21.02 Aligned_cols=17 Identities=6% Similarity=0.165 Sum_probs=14.4
Q ss_pred hhCCCCCCEEEEEecCC
Q 030447 149 YYGLERGQVVKVTYSGE 165 (177)
Q Consensus 149 y~Glk~GdVVKI~R~Se 165 (177)
.|.+++||+|.|+.++.
T Consensus 23 eLs~~~Gd~i~vl~~~~ 39 (70)
T 2ct4_A 23 TISMAEGEDLSLMEEDK 39 (70)
T ss_dssp CCCBCTTCEEEEEECCS
T ss_pred cCCCCCCCEEEEEeccC
Confidence 57789999999998764
No 98
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A
Probab=25.31 E-value=29 Score=22.67 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=14.9
Q ss_pred hhCCCCCCEEEEEecCCC
Q 030447 149 YYGLERGQVVKVTYSGEI 166 (177)
Q Consensus 149 y~Glk~GdVVKI~R~Set 166 (177)
.|.+++||+|.|+.++..
T Consensus 25 eLs~~~Gd~i~v~~~~~~ 42 (74)
T 1gbq_A 25 ELSFKRGDILKVLNEECD 42 (74)
T ss_dssp BCCBCTTCEEECCBCSSC
T ss_pred eeeEcCCCEEEEeEecCC
Confidence 578999999999987643
No 99
>2ooi_A SA0254 protein; staphylocococcus aureus, structural genomics, PSI-2, MCSG, P structure initiative; 2.60A {Staphylococcus aureus subsp} SCOP: d.190.1.2
Probab=25.17 E-value=40 Score=24.28 Aligned_cols=24 Identities=8% Similarity=0.027 Sum_probs=18.7
Q ss_pred cccCChhhhhhCCCCCC-EEEEEec
Q 030447 140 MLKKDAIAQYYGLERGQ-VVKVTYS 163 (177)
Q Consensus 140 I~~sDPvary~Glk~Gd-VVKI~R~ 163 (177)
+..++-+|+.||+.+|+ |++|.|-
T Consensus 31 ~~a~~~ia~~L~l~~~~~v~~i~Rl 55 (162)
T 2ooi_A 31 ATPPKSVQDELQLNADDTVYYLERL 55 (162)
T ss_dssp SSCCHHHHHHTTCCSSSCEEEEEEE
T ss_pred ECCCHHHHHhcCcCCCCEEEEEEEE
Confidence 45566799999999985 7788773
No 100
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1
Probab=25.11 E-value=45 Score=21.32 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=13.4
Q ss_pred hhhCCCCCCEEEEEec
Q 030447 148 QYYGLERGQVVKVTYS 163 (177)
Q Consensus 148 ry~Glk~GdVVKI~R~ 163 (177)
..|.+++||+|.|+.+
T Consensus 26 ~eLs~~~Gd~i~v~~~ 41 (71)
T 1csk_A 26 QDLPFCKGDVLTIVAV 41 (71)
T ss_dssp TBCCBCTTCEEEEEEE
T ss_pred CcCCCCCCCEEEEeEC
Confidence 3577999999999983
No 101
>1o6a_A Putative flagellar motor switch protein FLIN; C- terminal PR fragment, structural genomics, joint center for structural JCSG; 1.85A {Thermotoga maritima} SCOP: b.139.1.1 PDB: 1yab_A
Probab=25.09 E-value=32 Score=24.42 Aligned_cols=19 Identities=5% Similarity=0.266 Sum_probs=16.8
Q ss_pred hhhhhhCCCCCCEEEEEec
Q 030447 145 AIAQYYGLERGQVVKVTYS 163 (177)
Q Consensus 145 Pvary~Glk~GdVVKI~R~ 163 (177)
|+...+.|++||||.+.+.
T Consensus 33 tl~ell~L~~GdVI~Ld~~ 51 (96)
T 1o6a_A 33 TLKRVLEMIHGSIIELDKL 51 (96)
T ss_dssp EHHHHHHCCTTCEEEEEEE
T ss_pred EHHHHhCCCCCCEEEeCCC
Confidence 6778899999999999874
No 102
>3lhe_A GNTR family transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.62A {Bacillus anthracis} SCOP: d.190.1.0 PDB: 3l5z_A*
Probab=25.07 E-value=34 Score=24.31 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=18.4
Q ss_pred CcccCChhhhhhCCCCCC-EEEEEec
Q 030447 139 RMLKKDAIAQYYGLERGQ-VVKVTYS 163 (177)
Q Consensus 139 rI~~sDPvary~Glk~Gd-VVKI~R~ 163 (177)
.+..++-+|+.||+.+|+ |++|.|-
T Consensus 18 ~~~a~~~ia~~L~l~~~~~v~~i~Rl 43 (143)
T 3lhe_A 18 IVGADEIIAEKLGISVGDFVYKIIRL 43 (143)
T ss_dssp EEECCHHHHHHHTSCTTCEEEEEEEE
T ss_pred EEcCCHHHHHhcCCCCCCEEEEEEEE
Confidence 345566789999999987 6667663
No 103
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A
Probab=25.02 E-value=41 Score=20.99 Aligned_cols=16 Identities=6% Similarity=0.266 Sum_probs=13.9
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+.+.
T Consensus 22 eLs~~~Gd~i~v~~~~ 37 (64)
T 2jte_A 22 ELTFREGEIIHLISKE 37 (64)
T ss_dssp BCCBCTTCEEEEEESC
T ss_pred ccCCCCCCEEEEEECC
Confidence 5789999999999874
No 104
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.02 E-value=43 Score=21.91 Aligned_cols=16 Identities=31% Similarity=0.258 Sum_probs=13.6
Q ss_pred hhhCCCCCCEEEEEec
Q 030447 148 QYYGLERGQVVKVTYS 163 (177)
Q Consensus 148 ry~Glk~GdVVKI~R~ 163 (177)
..|.+++||+|.|+..
T Consensus 29 ~eLsf~~Gd~i~v~~~ 44 (75)
T 2ege_A 29 GRLALRAGDVVMVYGP 44 (75)
T ss_dssp CBCCBCTTCEEEEESC
T ss_pred CcceECCCCEEEEeEc
Confidence 4678999999999964
No 105
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.00 E-value=46 Score=21.09 Aligned_cols=16 Identities=13% Similarity=0.196 Sum_probs=14.0
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+.+.
T Consensus 23 eLs~~~Gd~i~v~~~~ 38 (68)
T 1x2p_A 23 QLSFLRGEKILILRQT 38 (68)
T ss_dssp BCCCCTTCEEEEEECC
T ss_pred CcCCCCCCEEEEEEcC
Confidence 5779999999999875
No 106
>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A
Probab=24.95 E-value=38 Score=22.21 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=14.3
Q ss_pred hhCCCCCCEEEEEecCC
Q 030447 149 YYGLERGQVVKVTYSGE 165 (177)
Q Consensus 149 y~Glk~GdVVKI~R~Se 165 (177)
.|.+++||+|.|+.++.
T Consensus 22 ELs~~~Gd~i~v~~~~~ 38 (65)
T 2lj0_A 22 ELELRDGDIVDVMEKCD 38 (65)
T ss_dssp BCCBCTTCEEEEEEECT
T ss_pred CcCCCCCCEEEEeEeCC
Confidence 57899999999988653
No 107
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A
Probab=24.82 E-value=48 Score=20.19 Aligned_cols=16 Identities=13% Similarity=0.208 Sum_probs=13.9
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.+-+++||+|.|+.++
T Consensus 19 eLs~~~Gd~i~v~~~~ 34 (58)
T 2drm_A 19 ELTFKEGDTIIVHQKD 34 (58)
T ss_dssp BCCBCTTCEEEEEECC
T ss_pred CcCCCCCCEEEEEEec
Confidence 4778999999999875
No 108
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.76 E-value=49 Score=21.08 Aligned_cols=17 Identities=6% Similarity=0.255 Sum_probs=14.3
Q ss_pred hhhCCCCCCEEEEEecC
Q 030447 148 QYYGLERGQVVKVTYSG 164 (177)
Q Consensus 148 ry~Glk~GdVVKI~R~S 164 (177)
..|.+++||+|.|+.+.
T Consensus 22 ~eLs~~~Gd~i~v~~~~ 38 (68)
T 2dl4_A 22 EDLEMRPGDIITLLEDS 38 (68)
T ss_dssp TBCCCCTTCEEEEEECC
T ss_pred CCcCCCCCCEEEEEEeC
Confidence 35789999999999864
No 109
>3hfi_A Putative regulator; structural geonomics, PSI, MCSG, structural genom protein structure initiative, midwest center for structural genomics; 2.20A {Escherichia coli O6}
Probab=24.69 E-value=35 Score=25.04 Aligned_cols=31 Identities=13% Similarity=0.131 Sum_probs=21.0
Q ss_pred CcccCChhhhhhCCCCCC-EEEEEecCCCCcc
Q 030447 139 RMLKKDAIAQYYGLERGQ-VVKVTYSGEITES 169 (177)
Q Consensus 139 rI~~sDPvary~Glk~Gd-VVKI~R~SetaG~ 169 (177)
.+..+..+|+.||+.+|+ |++|.|---.-|.
T Consensus 33 ~~~a~~~ia~~L~l~~g~~v~~i~Rlr~~d~~ 64 (170)
T 3hfi_A 33 IEPANRYVAEKLRITPGQDILYLERLRSIGDE 64 (170)
T ss_dssp EEECCHHHHHHHTSCTTCEEEEEEEEEESSSS
T ss_pred EEcCCHHHHHhcCcCCCCEEEEEEEEEEECCc
Confidence 355667789999999986 6677664333343
No 110
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A
Probab=24.68 E-value=41 Score=20.64 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=13.9
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.+.+++||+|.|+.+.
T Consensus 18 eLs~~~Gd~i~v~~~~ 33 (58)
T 1zx6_A 18 DLGLKPGDKVQLLEKL 33 (58)
T ss_dssp BCCBCTTCEEEEEEEC
T ss_pred CccCCCCCEEEEEEec
Confidence 5789999999999875
No 111
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine kinase, signal transduction; NMR {Homo sapiens} PDB: 1wa7_A
Probab=24.68 E-value=38 Score=21.17 Aligned_cols=16 Identities=19% Similarity=0.275 Sum_probs=13.9
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+.+.
T Consensus 23 eLs~~~Gd~i~v~~~~ 38 (65)
T 1w1f_A 23 DLSFKKGEKMKVLEEH 38 (65)
T ss_dssp CCCBCTTCEEEEEEEC
T ss_pred cCCCCCCCEEEEEEcC
Confidence 5778999999999876
No 112
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}
Probab=24.59 E-value=50 Score=20.91 Aligned_cols=16 Identities=13% Similarity=0.193 Sum_probs=13.9
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+.+.
T Consensus 23 eLs~~~Gd~i~v~~~~ 38 (68)
T 2djq_A 23 DLKFNKGDVILLRRQL 38 (68)
T ss_dssp CCCCCTTCEEEEEECC
T ss_pred CccCCCCCEEEEEEec
Confidence 5789999999998874
No 113
>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}
Probab=24.57 E-value=40 Score=21.35 Aligned_cols=16 Identities=13% Similarity=0.196 Sum_probs=14.0
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+.+.
T Consensus 29 eLs~~~Gd~i~v~~~~ 44 (72)
T 4glm_A 29 ELDFEVGDKIRILATL 44 (72)
T ss_dssp BCCBCTTCEEEEEEEC
T ss_pred cCCCCCCCEEEEEEcc
Confidence 4789999999999865
No 114
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A
Probab=24.49 E-value=41 Score=21.29 Aligned_cols=16 Identities=6% Similarity=0.162 Sum_probs=13.8
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.+.+++||+|.|+.+.
T Consensus 22 eLs~~~Gd~i~v~~~~ 37 (67)
T 2o9s_A 22 EMSFRKGERITLLRQV 37 (67)
T ss_dssp BCCBCTTCEEEEEEEC
T ss_pred ccCCCCCCEEEEEEec
Confidence 5789999999999864
No 115
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=24.48 E-value=41 Score=22.10 Aligned_cols=17 Identities=12% Similarity=0.069 Sum_probs=14.5
Q ss_pred hhCCCCCCEEEEEecCC
Q 030447 149 YYGLERGQVVKVTYSGE 165 (177)
Q Consensus 149 y~Glk~GdVVKI~R~Se 165 (177)
.|.+++||+|.|+.+..
T Consensus 29 eLs~~~Gd~i~vl~~~~ 45 (79)
T 1uhc_A 29 ELSVSANQKLKILEFKD 45 (79)
T ss_dssp BCCBCTTCEEEEEESCC
T ss_pred ccCCCCCCEEEEEECCC
Confidence 47789999999999764
No 116
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A
Probab=24.44 E-value=42 Score=21.87 Aligned_cols=16 Identities=13% Similarity=0.308 Sum_probs=14.2
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+.++
T Consensus 18 eLs~~~Gd~i~vl~~~ 33 (69)
T 2ydl_A 18 ELTIKEGDIVTLINKD 33 (69)
T ss_dssp BCCBCTTCEEEEEESC
T ss_pred ccccCCCCEEEEEEcC
Confidence 5789999999999875
No 117
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*
Probab=24.41 E-value=44 Score=21.36 Aligned_cols=17 Identities=18% Similarity=0.345 Sum_probs=14.5
Q ss_pred hhCCCCCCEEEEEecCC
Q 030447 149 YYGLERGQVVKVTYSGE 165 (177)
Q Consensus 149 y~Glk~GdVVKI~R~Se 165 (177)
.|.+++||+|.|+.+..
T Consensus 31 eLs~~~Gd~i~v~~~~~ 47 (73)
T 3h0h_A 31 DLSFHKGEKFQILNSSE 47 (73)
T ss_dssp BCCBCTTCEEEEEECSS
T ss_pred cceEeCCCEEEEEEecC
Confidence 67899999999998763
No 118
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.39 E-value=38 Score=21.65 Aligned_cols=17 Identities=24% Similarity=0.262 Sum_probs=14.3
Q ss_pred hhCCCCCCEEEEEecCC
Q 030447 149 YYGLERGQVVKVTYSGE 165 (177)
Q Consensus 149 y~Glk~GdVVKI~R~Se 165 (177)
.|.+++||+|.|+.+..
T Consensus 23 eLs~~~Gd~i~v~~~~~ 39 (68)
T 2dmo_A 23 ELQVMPGNIVFVLKKGN 39 (68)
T ss_dssp SCCCCTTCEEEECEECS
T ss_pred CCCCCCCCEEEEEEeCC
Confidence 47899999999988754
No 119
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=24.28 E-value=36 Score=22.25 Aligned_cols=18 Identities=22% Similarity=0.134 Sum_probs=12.2
Q ss_pred CChhhhhhCCCCCCEEEEE
Q 030447 143 KDAIAQYYGLERGQVVKVT 161 (177)
Q Consensus 143 sDPvary~Glk~GdVVKI~ 161 (177)
.-|.+ .-|+++||+|-=+
T Consensus 37 ~spA~-~aGl~~GD~I~~i 54 (88)
T 2uzc_A 37 GGKAA-QANVRIGDVVLSI 54 (88)
T ss_dssp TSHHH-HTTCCTTCEEEEE
T ss_pred CChHH-HcCCCCCCEEEEE
Confidence 33444 4599999988544
No 120
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}
Probab=24.13 E-value=45 Score=21.55 Aligned_cols=16 Identities=13% Similarity=0.304 Sum_probs=14.1
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+.++
T Consensus 15 eLs~~~Gd~i~v~~~~ 30 (73)
T 2kxd_A 15 EVTMKKGDILTLLNST 30 (73)
T ss_dssp CCCBCTTCEEEEEECC
T ss_pred EeeEcCCCEEEEEEec
Confidence 4789999999999876
No 121
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1
Probab=24.11 E-value=46 Score=21.26 Aligned_cols=18 Identities=11% Similarity=0.314 Sum_probs=14.9
Q ss_pred hhhCCCCCCEEEEEecCC
Q 030447 148 QYYGLERGQVVKVTYSGE 165 (177)
Q Consensus 148 ry~Glk~GdVVKI~R~Se 165 (177)
..|.+++||+|.|+.++.
T Consensus 20 ~eLs~~~Gd~i~v~~~~~ 37 (73)
T 3thk_A 20 REVTMKKGDILTLLNSTN 37 (73)
T ss_dssp TBCCBCTTCEEEEEECCS
T ss_pred CccCCCCCCEEEEEECCC
Confidence 357899999999998763
No 122
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Probab=24.00 E-value=43 Score=21.53 Aligned_cols=16 Identities=13% Similarity=0.308 Sum_probs=14.0
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+.+.
T Consensus 25 eLs~~~Gd~i~v~~~~ 40 (73)
T 2k9g_A 25 ELTIKEGDIVTLINKD 40 (73)
T ss_dssp BCCBCTTCEEEEEECC
T ss_pred eeeECCCCEEEEEECC
Confidence 5789999999999875
No 123
>1o9y_A HRCQ2; secretory protein, HRP, type III secretion system, phytopathogenicity; 2.29A {Pseudomonas syringae} SCOP: b.139.1.1
Probab=24.00 E-value=37 Score=23.51 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=16.5
Q ss_pred hhhhhhCCCCCCEEEEEec
Q 030447 145 AIAQYYGLERGQVVKVTYS 163 (177)
Q Consensus 145 Pvary~Glk~GdVVKI~R~ 163 (177)
|+...+.|++||||.+.++
T Consensus 29 tl~ell~L~~GdVi~Ld~~ 47 (84)
T 1o9y_A 29 TLAELRRLDAGTILEVTGI 47 (84)
T ss_dssp EHHHHHTCCTTCEEEECSS
T ss_pred EHHHHhcCCCCCEEEeCCC
Confidence 5778899999999999874
No 124
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}
Probab=23.99 E-value=39 Score=22.41 Aligned_cols=18 Identities=11% Similarity=0.442 Sum_probs=14.9
Q ss_pred hhCCCCCCEEEEEecCCC
Q 030447 149 YYGLERGQVVKVTYSGEI 166 (177)
Q Consensus 149 y~Glk~GdVVKI~R~Set 166 (177)
.|.+++||+|.|+.++..
T Consensus 26 eLsf~~Gd~i~v~~~~~~ 43 (80)
T 2i0n_A 26 LLPFKRNDIITITFKDQE 43 (80)
T ss_dssp SCCBCSSEEEEEEEESSS
T ss_pred CcCCCCCCEEEEEEecCC
Confidence 478899999999988643
No 125
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}
Probab=23.92 E-value=37 Score=21.05 Aligned_cols=16 Identities=6% Similarity=0.142 Sum_probs=13.8
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+.++
T Consensus 22 eLs~~~Gd~i~v~~~~ 37 (60)
T 2gnc_A 22 ELSFKKGASLLLYHRA 37 (60)
T ss_dssp BCCBCTTCEEEEEEEE
T ss_pred CcCCCCCCEEEEEEec
Confidence 5789999999998874
No 126
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=23.76 E-value=30 Score=27.67 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=18.9
Q ss_pred cCCCCCcccCChhhhhhCCCCCCEEEEE
Q 030447 134 EKQLPRMLKKDAIAQYYGLERGQVVKVT 161 (177)
Q Consensus 134 ~~QLPrI~~sDPvary~Glk~GdVVKI~ 161 (177)
++..| ..+.--+|-|.|+.||+||+.
T Consensus 48 Ds~~~--~V~~~~vk~LeLRiGD~VKVd 73 (153)
T 2fhd_A 48 DATMS--TVNSNQIKRFFLKKGDVVQST 73 (153)
T ss_dssp TSCEE--EEETTSEEESCCCTTCEEEET
T ss_pred CCCCC--ccChhhceeeeeecCCEEEEC
Confidence 33345 334446788999999999998
No 127
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}
Probab=23.56 E-value=35 Score=21.60 Aligned_cols=15 Identities=13% Similarity=0.406 Sum_probs=13.3
Q ss_pred hhCCCCCCEEEEEec
Q 030447 149 YYGLERGQVVKVTYS 163 (177)
Q Consensus 149 y~Glk~GdVVKI~R~ 163 (177)
.|.+++||+|.|+.+
T Consensus 23 eLs~~~Gd~i~v~~~ 37 (67)
T 2kxc_A 23 LLSFAQGDVITLLIP 37 (67)
T ss_dssp BCCBCTTCEEEESSS
T ss_pred CCcCCCCCEEEEeEC
Confidence 578999999999975
No 128
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1
Probab=23.53 E-value=39 Score=21.70 Aligned_cols=16 Identities=13% Similarity=0.353 Sum_probs=13.7
Q ss_pred hhhCCCCCCEEEEEec
Q 030447 148 QYYGLERGQVVKVTYS 163 (177)
Q Consensus 148 ry~Glk~GdVVKI~R~ 163 (177)
..|.+++||+|.|+.+
T Consensus 23 ~eLs~~~Gd~i~v~~~ 38 (72)
T 1spk_A 23 TLLSFAQGDVLTLLIP 38 (72)
T ss_dssp SBCCBCTTCEEEECCS
T ss_pred CCCcCCCCCEEEEeEc
Confidence 3578999999999976
No 129
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=23.46 E-value=45 Score=26.17 Aligned_cols=31 Identities=16% Similarity=0.320 Sum_probs=22.5
Q ss_pred CcccCChhhhh---hCCCCCCEEEEEecCCCCcc
Q 030447 139 RMLKKDAIAQY---YGLERGQVVKVTYSGEITES 169 (177)
Q Consensus 139 rI~~sDPvary---~Glk~GdVVKI~R~SetaG~ 169 (177)
+|...+.+.++ +|+.||..|+|++..+..|.
T Consensus 156 ~i~~~~~~~~~L~~~Gi~pG~~v~v~~~~p~~gp 189 (214)
T 3hrs_A 156 RVHDNFDLLTYLERNGLQVGKTIRFLGYDDFSHL 189 (214)
T ss_dssp EECCCHHHHHHHHTTTCCTTCEEEEEEEETTTTE
T ss_pred EEeCcHHHHHHHHHCCCCCCCEEEEEEecCCCCe
Confidence 45545445555 49999999999998876554
No 130
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=23.43 E-value=37 Score=22.54 Aligned_cols=17 Identities=12% Similarity=0.329 Sum_probs=14.6
Q ss_pred hhCCCCCCEEEEEecCC
Q 030447 149 YYGLERGQVVKVTYSGE 165 (177)
Q Consensus 149 y~Glk~GdVVKI~R~Se 165 (177)
.+.+++||+|.|+.++.
T Consensus 24 ELsf~~Gd~i~Vl~~~~ 40 (69)
T 1nm7_A 24 EVALKKGDLMAILSKKD 40 (69)
T ss_dssp CCCCCTTCEEEECCSSS
T ss_pred ccCCCCCCEEEEEecCC
Confidence 57799999999998864
No 131
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A
Probab=23.42 E-value=49 Score=20.90 Aligned_cols=16 Identities=19% Similarity=0.227 Sum_probs=13.8
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+.+.
T Consensus 23 eLs~~~Gd~i~v~~~~ 38 (68)
T 2dl3_A 23 ELPLQKGDIVYIYKQI 38 (68)
T ss_dssp BCCBCTTCEEEEEECC
T ss_pred CccCCCCCEEEEeEec
Confidence 5789999999999864
No 132
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.41 E-value=41 Score=22.68 Aligned_cols=16 Identities=44% Similarity=0.505 Sum_probs=13.9
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+.+.
T Consensus 34 eLsf~~Gd~i~v~~~~ 49 (88)
T 2dbk_A 34 ALALEVGDIVKVTRMN 49 (88)
T ss_dssp BCCBCTTCEEEEEEEC
T ss_pred cccCCCCCEEEEEEec
Confidence 4789999999998875
No 133
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=23.40 E-value=52 Score=22.30 Aligned_cols=40 Identities=13% Similarity=0.122 Sum_probs=28.0
Q ss_pred HHHHHHhhcCCCcCCCCCcccCC-hhhhhhCCCCCCEEEEEec
Q 030447 122 EKEKLLKKYSIEEKQLPRMLKKD-AIAQYYGLERGQVVKVTYS 163 (177)
Q Consensus 122 Ek~~lL~~y~i~~~QLPrI~~sD-Pvary~Glk~GdVVKI~R~ 163 (177)
=...||+++++.++.. -+..+. ++.+-- +..||.|+|.+-
T Consensus 22 Tv~dLL~~Lgl~~~~V-vV~vNG~~v~~d~-~l~GD~VeIv~~ 62 (74)
T 2l32_A 22 TYADLVRAVDLSPHEV-TVLVDGRPVPEDQ-SVEVDRVKVLRL 62 (74)
T ss_dssp SHHHHHHTTCCCSSCC-CEECCCCCCCTTS-SSCCCCEEECSS
T ss_pred cHHHHHHHcCCCcceE-EEEECCEECCHHH-CCCCCEEEEEEe
Confidence 3678999999998888 455554 333332 445999999874
No 134
>2k5i_A Iron transport protein; iron(II) transport protein A, FEOA, , structural genomic, structural genomics, PSI-2; NMR {Clostridium thermocellum}
Probab=23.31 E-value=77 Score=24.51 Aligned_cols=25 Identities=8% Similarity=0.306 Sum_probs=19.1
Q ss_pred hhCCCCCCEEEEEecCCCCccceEEE
Q 030447 149 YYGLERGQVVKVTYSGEITESHVTYR 174 (177)
Q Consensus 149 y~Glk~GdVVKI~R~SetaG~~v~YR 174 (177)
.+|+.+|..|++++.++..|. +.++
T Consensus 29 ~mGl~pG~~V~Vv~~~P~ggp-i~v~ 53 (162)
T 2k5i_A 29 GMGFVPGEEIEIVQVAPLGDP-IVCK 53 (162)
T ss_dssp HHTCCTTCEEEEEEECTTSCC-EEEE
T ss_pred HcCCCCCCEEEEEEECCCCCC-EEEE
Confidence 359999999999999876543 4444
No 135
>3op6_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 2.00A {Legionella pneumophila subsp}
Probab=23.20 E-value=28 Score=25.89 Aligned_cols=43 Identities=14% Similarity=0.110 Sum_probs=28.4
Q ss_pred cCHHHHHHHHhhcCCCcC--CCCCcccCChhhhhhCCCCCCEEEE
Q 030447 118 LTDQEKEKLLKKYSIEEK--QLPRMLKKDAIAQYYGLERGQVVKV 160 (177)
Q Consensus 118 Ls~eEk~~lL~~y~i~~~--QLPrI~~sDPvary~Glk~GdVVKI 160 (177)
|+-+...++|++.+|.-+ ..|-....+=+|.++|..+++++|-
T Consensus 2 M~~~~v~~~L~~~~i~~~~~~~~~~~t~~~~a~~lg~~~~~~~Kt 46 (152)
T 3op6_A 2 MPVKKLKQFLDSHKIKYLSIAHSPAYTAQEIAASAHVSGKQLAKT 46 (152)
T ss_dssp CHHHHHHHHHHHTTCCEEEEEECTTCCHHHHC----CCSSCCEEE
T ss_pred CcHHHHHHHHHHcCCceEEEEcCCCCCHHHHHHHcCCChhheEEE
Confidence 345678889999998643 2455556666789999999998884
No 136
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=23.08 E-value=1.2e+02 Score=18.76 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=25.9
Q ss_pred HHHHHhhcCCCcCCC-----CCcccCChhhhhhCCCCCCEEEEEec
Q 030447 123 KEKLLKKYSIEEKQL-----PRMLKKDAIAQYYGLERGQVVKVTYS 163 (177)
Q Consensus 123 k~~lL~~y~i~~~QL-----PrI~~sDPvary~Glk~GdVVKI~R~ 163 (177)
|+++-++.++..++. .+++.+|-....||++.|+.|.+..+
T Consensus 27 K~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 1ndd_A 27 KERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLA 72 (76)
T ss_dssp HHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred HHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 444444555544332 34555666677889999999988654
No 137
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=23.06 E-value=38 Score=21.92 Aligned_cols=16 Identities=13% Similarity=0.204 Sum_probs=14.0
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+.+.
T Consensus 23 eLs~~~Gd~i~v~~~~ 38 (77)
T 2d8j_A 23 DLSFRAGDKLQVLDTS 38 (77)
T ss_dssp BCCBCTTCCEEEEECC
T ss_pred ccCCCCCCEEEEEECC
Confidence 5789999999999875
No 138
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Probab=23.02 E-value=46 Score=20.49 Aligned_cols=16 Identities=6% Similarity=-0.029 Sum_probs=13.9
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+.+.
T Consensus 22 eLs~~~Gd~i~v~~~~ 37 (64)
T 4f14_A 22 EVSFRDGDYIVNVQPI 37 (64)
T ss_dssp BCCBCTTCEEEEEEEC
T ss_pred cCCCCCCCEEEEEEeC
Confidence 4789999999998875
No 139
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.00 E-value=46 Score=21.24 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=13.7
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+.++
T Consensus 23 eLs~~~Gd~i~v~~~~ 38 (68)
T 1wxb_A 23 ELSVLKDEVLEVLEDG 38 (68)
T ss_dssp BCCBCTTCEEEEEECS
T ss_pred ccCCCCCCEEEEEEcC
Confidence 5678999999999874
No 140
>3dtg_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP; 1.90A {Mycobacterium smegmatis} PDB: 3dtf_A* 3jz6_A* 3ht5_A*
Probab=23.00 E-value=21 Score=30.94 Aligned_cols=29 Identities=24% Similarity=0.538 Sum_probs=23.6
Q ss_pred HHHHHHHHhcCCCCccChhhhccCHHHHHHH
Q 030447 45 SRRTVLEMLKDRGYAVALSEINLSVQDFRAI 75 (177)
Q Consensus 45 ~rrTv~eMl~DRGY~V~~~el~~sl~~F~~~ 75 (177)
.|++|++++++.||.|.+ -.+|++|..+-
T Consensus 276 TR~sVi~LA~~~Gi~V~E--r~it~~El~~A 304 (372)
T 3dtg_A 276 TRDSLLQLATDAGFAVEE--RKIDVDEWQKK 304 (372)
T ss_dssp HHHHHHHHHHHHTCEEEE--CCCBHHHHHHH
T ss_pred HHHHHHHHHHHCCceEEE--EeCCHHHHHHH
Confidence 478999999999999987 45578887654
No 141
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Probab=22.98 E-value=43 Score=20.76 Aligned_cols=16 Identities=13% Similarity=0.104 Sum_probs=14.1
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.+.+++||+|.|+.++
T Consensus 20 eLs~~~Gd~i~v~~~~ 35 (60)
T 1w70_A 20 ELNFKAGDVIFLLSRI 35 (60)
T ss_dssp BCCBCTTCEEEEEEEC
T ss_pred CccCCCCCEEEEEEeC
Confidence 5789999999999875
No 142
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=22.93 E-value=36 Score=23.48 Aligned_cols=15 Identities=20% Similarity=0.337 Sum_probs=11.2
Q ss_pred hhhhCCCCCCEEEEE
Q 030447 147 AQYYGLERGQVVKVT 161 (177)
Q Consensus 147 ary~Glk~GdVVKI~ 161 (177)
|.-.|+++||+|.=+
T Consensus 50 A~~aGl~~GDvI~~i 64 (105)
T 2i4s_A 50 FESIGLQDGDMAVAL 64 (105)
T ss_dssp HHHHTCCTTCEEEEE
T ss_pred HHHcCCCCCCEEEEE
Confidence 355799999998533
No 143
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A
Probab=22.80 E-value=46 Score=21.27 Aligned_cols=16 Identities=13% Similarity=0.183 Sum_probs=13.8
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+.++
T Consensus 24 eLs~~~Gd~i~v~~~~ 39 (68)
T 2k2m_A 24 ELSVKQRDVLEVLDDS 39 (68)
T ss_dssp BCCBCTTCEEEEEECS
T ss_pred cccCCCCCEEEEEEcC
Confidence 5678999999999875
No 144
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=22.78 E-value=33 Score=29.44 Aligned_cols=49 Identities=10% Similarity=0.129 Sum_probs=34.3
Q ss_pred ecCHHHHHHHHhhcCCCcCCCCCcccCChhhh-hhCCCCCCEEEEEecCC
Q 030447 117 VLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQ-YYGLERGQVVKVTYSGE 165 (177)
Q Consensus 117 vLs~eEk~~lL~~y~i~~~QLPrI~~sDPvar-y~Glk~GdVVKI~R~Se 165 (177)
+=+-+=--.++++|++...+|=++...++-+. --.+++||.++|...+.
T Consensus 12 Vk~GDTL~~Ia~r~gvs~~~l~~~n~~~~~~~~~~~L~~Gq~L~i~~~~~ 61 (361)
T 2gu1_A 12 VKVGDTLSGIFAQLGVPYSILQKILSVDLDHLQLDMIQPGEELELMMDDM 61 (361)
T ss_dssp CCTTCCHHHHHHHTTCCHHHHHHHHHHGGGTCCGGGCCTTCEEEEEECTT
T ss_pred ECCCCcHHHHHHHcCCCHHHHHHHHhhcccccchhcCCCCCEEEEEECCC
Confidence 33444456789999999988888766554321 24689999999987543
No 145
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.78 E-value=54 Score=20.81 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=13.9
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+.+.
T Consensus 23 eLs~~~Gd~i~v~~~~ 38 (68)
T 1x2k_A 23 ELYFEEGDIIYITDMS 38 (68)
T ss_dssp BCCCCSSCEEEEEECS
T ss_pred cccCCCCCEEEEEEcC
Confidence 6789999999999873
No 146
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}
Probab=22.75 E-value=39 Score=29.62 Aligned_cols=50 Identities=18% Similarity=0.211 Sum_probs=35.2
Q ss_pred ceecCHHHHHHHHhhcCCCcCCCCCcccCChhhhh-hCCCCCCEEEEEecC
Q 030447 115 HQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQY-YGLERGQVVKVTYSG 164 (177)
Q Consensus 115 H~vLs~eEk~~lL~~y~i~~~QLPrI~~sDPvary-~Glk~GdVVKI~R~S 164 (177)
|++=+-+--..+|+++++...++=.|...++-++- -.|++||.++|....
T Consensus 17 ~~V~~GDTL~~IL~r~Gls~~di~~i~~~~~~~~~l~~LrpGq~l~i~~~~ 67 (371)
T 3slu_A 17 EAVQPGDSLADVLARSGMARDEIARITEKYGGEADLRHLRADQSVHVLVGG 67 (371)
T ss_dssp EECCTTCCHHHHHHHTTCCHHHHHHHHTTC------CCBCSSSEEEEEECT
T ss_pred EEECCCCcHHHHHHHcCCCHHHHHHHHHhccccCchhhCCCCCEEEEEECC
Confidence 34444555678899999998888888888765544 478999999997654
No 147
>2p19_A Transcriptional regulator; bacterial regulatory protein, GNTR family, MCSG, structural PSI-2, protein structure initiative; 2.10A {Corynebacterium glutamicum} SCOP: d.190.1.2
Probab=22.63 E-value=41 Score=23.77 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=18.3
Q ss_pred cccCChhhhhhCCCCCC-EEEEEec
Q 030447 140 MLKKDAIAQYYGLERGQ-VVKVTYS 163 (177)
Q Consensus 140 I~~sDPvary~Glk~Gd-VVKI~R~ 163 (177)
+..++-+|+.||+.+|+ |++|.|-
T Consensus 18 ~~a~~~ia~~L~l~~~~~v~~i~Rl 42 (149)
T 2p19_A 18 LAASSAIAEKLGVSAGDEVLLIRRL 42 (149)
T ss_dssp EECCHHHHHHHTSCTTCEEEEEEEE
T ss_pred EcCCHHHHHHcCcCCCCEEEEEEEE
Confidence 44566789999999986 7777763
No 148
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.54 E-value=44 Score=21.25 Aligned_cols=16 Identities=13% Similarity=0.316 Sum_probs=14.0
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+.+.
T Consensus 23 eLs~~~Gd~i~v~~~~ 38 (71)
T 2cre_A 23 ELAFSRGDILTILEQH 38 (71)
T ss_dssp BCCCCSSCCEEEEESC
T ss_pred CCCCCCCCEEEEeEcC
Confidence 5779999999999874
No 149
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}
Probab=22.43 E-value=34 Score=23.22 Aligned_cols=18 Identities=17% Similarity=0.217 Sum_probs=15.0
Q ss_pred hhhCCCCCCEEEEEecCC
Q 030447 148 QYYGLERGQVVKVTYSGE 165 (177)
Q Consensus 148 ry~Glk~GdVVKI~R~Se 165 (177)
..|.+++||+|.|+.+..
T Consensus 34 ~eLsf~~GDiI~V~~~~~ 51 (83)
T 2ke9_A 34 TALNVRAGDVITVLEQHP 51 (83)
T ss_dssp TBCCBCTTCEEEESCSSC
T ss_pred CcccccCCCEEEEEEecC
Confidence 468899999999988754
No 150
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}
Probab=22.37 E-value=45 Score=21.55 Aligned_cols=16 Identities=19% Similarity=0.416 Sum_probs=13.9
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+.+.
T Consensus 19 eLsf~~Gd~i~v~~~~ 34 (68)
T 2ew3_A 19 ELGFKEGDIITLTNQI 34 (68)
T ss_dssp BCCBCTTCEEEEEEES
T ss_pred ccCCCCCCEEEEEEec
Confidence 5789999999999864
No 151
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=22.24 E-value=12 Score=25.44 Aligned_cols=41 Identities=15% Similarity=0.255 Sum_probs=33.8
Q ss_pred cCCceecCHHHHHHHHhhcCCCcCCCCCcccCChhhhhhCCCC
Q 030447 112 KPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLER 154 (177)
Q Consensus 112 VPkH~vLs~eEk~~lL~~y~i~~~QLPrI~~sDPvary~Glk~ 154 (177)
-|.|.++|.+...+|-+.|. ..+-|.......+|+.+|+..
T Consensus 5 ~~~~~~~t~~ql~~LE~~F~--~~~yp~~~~r~~LA~~l~Lte 45 (69)
T 2l9r_A 5 HHHHSHMSHTQVIELERKFS--HQKYLSAPERAHLAKNLKLTE 45 (69)
T ss_dssp SCSCCCCCHHHHHHHHHHHH--HCSCCCHHHHHHHHHHTTCCH
T ss_pred CCCCCcCCHHHHHHHHHHHh--cCCCCCHHHHHHHHHHhCCCh
Confidence 47899999999999888885 566788888888899888854
No 152
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.16 E-value=51 Score=21.97 Aligned_cols=16 Identities=19% Similarity=0.250 Sum_probs=11.4
Q ss_pred hhhhhCCCCCCEEEEE
Q 030447 146 IAQYYGLERGQVVKVT 161 (177)
Q Consensus 146 vary~Glk~GdVVKI~ 161 (177)
.|..-|+++||+|-=+
T Consensus 44 pA~~aGl~~GD~I~~i 59 (94)
T 2eeg_A 44 KAALAALCPGDLIQAI 59 (94)
T ss_dssp HHHHTTCCTTCEEEEE
T ss_pred HHHHcCCCCCCEEEEE
Confidence 3445699999988543
No 153
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=22.10 E-value=1.2e+02 Score=18.76 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=24.9
Q ss_pred HHHHHhhcCCCcCCC-----CCcccCChhhhhhCCCCCCEEEEEec
Q 030447 123 KEKLLKKYSIEEKQL-----PRMLKKDAIAQYYGLERGQVVKVTYS 163 (177)
Q Consensus 123 k~~lL~~y~i~~~QL-----PrI~~sDPvary~Glk~GdVVKI~R~ 163 (177)
|+.+-++.++..++. .+++.+|-....||++.|+.|.+..+
T Consensus 27 K~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 27 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLR 72 (76)
T ss_dssp HHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEEC
T ss_pred HHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence 333444455543332 34455555667889999999988654
No 154
>2ikk_A Hypothetical transcriptional regulator YURK; APC85442, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 1.80A {Bacillus subtilis} SCOP: d.190.1.2
Probab=22.08 E-value=43 Score=24.61 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=18.7
Q ss_pred CcccCChhhhhhCCCCCC-EEEEEec
Q 030447 139 RMLKKDAIAQYYGLERGQ-VVKVTYS 163 (177)
Q Consensus 139 rI~~sDPvary~Glk~Gd-VVKI~R~ 163 (177)
.+..++-+|+.||+.+|+ |++|.|-
T Consensus 39 ~~~a~~~ia~~L~l~~g~~v~~i~Rl 64 (173)
T 2ikk_A 39 IIPASKPIAEKLQIQPESPVVELKRI 64 (173)
T ss_dssp EEECCHHHHHHHTCCTTCEEEEEEEE
T ss_pred EEcCCHHHHHhcCCCCCCEEEEEEEE
Confidence 345567789999999986 6777763
No 155
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}
Probab=21.98 E-value=43 Score=20.39 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=13.5
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.+.+++||+|.|+.+.
T Consensus 17 eLs~~~Gd~i~v~~~~ 32 (59)
T 1yn8_A 17 ELRLAEGDIVFISYKH 32 (59)
T ss_dssp BCCBCTTCEEEEEEEE
T ss_pred CcCCCCCCEEEEEEcC
Confidence 5779999999998764
No 156
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A
Probab=21.75 E-value=49 Score=20.81 Aligned_cols=16 Identities=13% Similarity=0.075 Sum_probs=13.8
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.+.+++||+|.|+.+.
T Consensus 22 eLs~~~Gd~i~v~~~~ 37 (65)
T 2j05_A 22 EISFLKGDMFIVHNEL 37 (65)
T ss_dssp BCCBCTTCEEEEEEEC
T ss_pred cCcCCCCCEEEEeEec
Confidence 5789999999998864
No 157
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.74 E-value=60 Score=21.38 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=14.0
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+.+.
T Consensus 26 eLs~~~Gd~i~v~~~~ 41 (81)
T 2ysq_A 26 ELAFKAGDVIKVLDAS 41 (81)
T ss_dssp SCCCCTTCEEEEEECC
T ss_pred cCCCCCCCEEEEEEEc
Confidence 4789999999999875
No 158
>2ki8_A Tungsten formylmethanofuran dehydrogenase, subunit D (FWDD-2); beta-barrel, structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus}
Probab=21.58 E-value=50 Score=24.80 Aligned_cols=26 Identities=23% Similarity=0.167 Sum_probs=19.4
Q ss_pred CCcccCChhhhhhCCCCCCEEEEEec
Q 030447 138 PRMLKKDAIAQYYGLERGQVVKVTYS 163 (177)
Q Consensus 138 PrI~~sDPvary~Glk~GdVVKI~R~ 163 (177)
|.+..+---|+.+|++.||.|+|.-.
T Consensus 53 ~~v~inp~dA~~lGI~dGd~V~V~s~ 78 (146)
T 2ki8_A 53 NYAEINEEDWNALGLQEGDRVKVKTE 78 (146)
T ss_dssp SEEEECHHHHHHHTCCTTCEEEEECS
T ss_pred CEEEECHHHHHHcCCCCCCEEEEEeC
Confidence 44544545578899999999999754
No 159
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=21.46 E-value=1.1e+02 Score=20.95 Aligned_cols=43 Identities=16% Similarity=0.285 Sum_probs=31.2
Q ss_pred HHHHHhhcCCCcCCCC------------CcccCChhhhhhCCCCCCEEEEEecCC
Q 030447 123 KEKLLKKYSIEEKQLP------------RMLKKDAIAQYYGLERGQVVKVTYSGE 165 (177)
Q Consensus 123 k~~lL~~y~i~~~QLP------------rI~~sDPvary~Glk~GdVVKI~R~Se 165 (177)
|++|-.+.++.+.|.= +++..|--..+||++.|..|.++-..+
T Consensus 31 K~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~~P 85 (86)
T 4b6w_A 31 KENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDLQP 85 (86)
T ss_dssp HHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred HHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeCCC
Confidence 5555566677665533 456777788999999999999876544
No 160
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A
Probab=21.43 E-value=53 Score=21.85 Aligned_cols=17 Identities=18% Similarity=0.345 Sum_probs=14.4
Q ss_pred hhCCCCCCEEEEEecCC
Q 030447 149 YYGLERGQVVKVTYSGE 165 (177)
Q Consensus 149 y~Glk~GdVVKI~R~Se 165 (177)
.|.+++||+|.|+.++.
T Consensus 21 eLs~~~Gd~i~vl~~~~ 37 (79)
T 3cqt_A 21 DLSFHKGEKFQILNSSE 37 (79)
T ss_dssp BCCBCTTCEEEEEECTT
T ss_pred cCCCCCCCEEEEEEecC
Confidence 57899999999998653
No 161
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Probab=21.34 E-value=48 Score=21.07 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=14.3
Q ss_pred hhhCCCCCCEEEEEecC
Q 030447 148 QYYGLERGQVVKVTYSG 164 (177)
Q Consensus 148 ry~Glk~GdVVKI~R~S 164 (177)
..|.+++||+|.|+.+.
T Consensus 18 ~eLs~~~Gd~i~v~~~~ 34 (69)
T 1ruw_A 18 SELPLKKGDIVFISRDE 34 (69)
T ss_dssp TBCCBCTTCEEEEEEEC
T ss_pred CcccCCCCCEEEEEEec
Confidence 35778999999999875
No 162
>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A
Probab=21.31 E-value=42 Score=26.78 Aligned_cols=20 Identities=20% Similarity=0.089 Sum_probs=16.8
Q ss_pred hhhhhhCCCCCCEEEEEecC
Q 030447 145 AIAQYYGLERGQVVKVTYSG 164 (177)
Q Consensus 145 Pvary~Glk~GdVVKI~R~S 164 (177)
-....||+.+||+|.|+-+.
T Consensus 44 ~~m~~Lgl~~GD~V~I~Gkr 63 (187)
T 3tiw_A 44 PKMDELQLFRGDTVLLKGKK 63 (187)
T ss_dssp HHHHHHTCCTTCEEEEECST
T ss_pred HHHHHcCCCCCCEEEEECCC
Confidence 35678999999999999765
No 163
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.24 E-value=56 Score=21.41 Aligned_cols=16 Identities=0% Similarity=-0.066 Sum_probs=13.7
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+...
T Consensus 33 eLs~~~Gd~i~v~~~~ 48 (79)
T 1x69_A 33 EISFDPDDIITNIEMI 48 (79)
T ss_dssp BCCCCTTCEEEEEEEC
T ss_pred CcCcCCCCEEEEeEec
Confidence 5789999999998764
No 164
>1jb0_E Photosystem 1 reaction centre subunit IV; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: b.34.4.2 PDB: 3pcq_E*
Probab=21.22 E-value=39 Score=24.12 Aligned_cols=13 Identities=31% Similarity=0.501 Sum_probs=11.2
Q ss_pred CCCCCEEEEEecC
Q 030447 152 LERGQVVKVTYSG 164 (177)
Q Consensus 152 lk~GdVVKI~R~S 164 (177)
.++|+.|||-|+.
T Consensus 1 i~RGskVrIlR~E 13 (75)
T 1jb0_E 1 VQRGSKVKILRPE 13 (75)
T ss_dssp CCTTCEEEECCTT
T ss_pred CCCCCEEEEcccc
Confidence 4799999999984
No 165
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.21 E-value=56 Score=21.37 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=14.2
Q ss_pred hhCCCCCCEEEEEecCC
Q 030447 149 YYGLERGQVVKVTYSGE 165 (177)
Q Consensus 149 y~Glk~GdVVKI~R~Se 165 (177)
.|.+++||+|.|+.+..
T Consensus 23 eLs~~~Gd~i~v~~~~~ 39 (79)
T 2yun_A 23 ELNLEKGDIVIIHEKKE 39 (79)
T ss_dssp BCCBCTTCEEEEEECCS
T ss_pred CcCCCCCCEEEEEEcCC
Confidence 57899999999998753
No 166
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.71 E-value=51 Score=21.79 Aligned_cols=17 Identities=24% Similarity=0.161 Sum_probs=14.3
Q ss_pred hhCCCCCCEEEEEecCC
Q 030447 149 YYGLERGQVVKVTYSGE 165 (177)
Q Consensus 149 y~Glk~GdVVKI~R~Se 165 (177)
.|.+++||+|.|+.+..
T Consensus 24 eLs~~~Gd~i~vl~~~~ 40 (80)
T 2ekh_A 24 EISFPAGVEVQVLEKQE 40 (80)
T ss_dssp SCCBCTTCEEEEEEECT
T ss_pred ccCcCCCCEEEEEEeCC
Confidence 47789999999998764
No 167
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.67 E-value=70 Score=20.53 Aligned_cols=16 Identities=6% Similarity=0.306 Sum_probs=13.8
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+.+.
T Consensus 24 eLsf~~Gd~i~v~~~~ 39 (73)
T 2dl7_A 24 ELSFPEGAIIRILNKE 39 (73)
T ss_dssp BCCBCTTCEEEEEECC
T ss_pred cCCCCCCCEEEEEECC
Confidence 4788999999999874
No 168
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.62 E-value=57 Score=21.39 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=14.6
Q ss_pred hhCCCCCCEEEEEecCC
Q 030447 149 YYGLERGQVVKVTYSGE 165 (177)
Q Consensus 149 y~Glk~GdVVKI~R~Se 165 (177)
.|.+++||+|.|+.+..
T Consensus 29 eLs~~~Gd~i~v~~~~~ 45 (78)
T 2dl5_A 29 ELTIEEHEVLEVIEDGD 45 (78)
T ss_dssp BCCBCSSEEEEEEECCS
T ss_pred CCCCCCCCEEEEEeccC
Confidence 57789999999999864
No 169
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.52 E-value=46 Score=22.21 Aligned_cols=17 Identities=24% Similarity=0.141 Sum_probs=14.4
Q ss_pred hhCCCCCCEEEEEecCC
Q 030447 149 YYGLERGQVVKVTYSGE 165 (177)
Q Consensus 149 y~Glk~GdVVKI~R~Se 165 (177)
.|.+++||+|.|+.++.
T Consensus 35 eLs~~~Gd~i~v~~~~~ 51 (85)
T 2yuq_A 35 ELALRRNEEYCLLDSSE 51 (85)
T ss_dssp BCCCCBTEEEEEEECCS
T ss_pred cCCCCCCCEEEEEEecC
Confidence 47799999999998763
No 170
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}
Probab=20.49 E-value=55 Score=20.83 Aligned_cols=16 Identities=13% Similarity=0.142 Sum_probs=13.8
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+.++
T Consensus 23 eLs~~~Gd~i~v~~~~ 38 (68)
T 1wxt_A 23 ELTVVQGEKLEVLDHS 38 (68)
T ss_dssp BCCBCTTCEEEEEECS
T ss_pred cCCCCCCCEEEEEEcC
Confidence 5778999999999874
No 171
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=20.46 E-value=29 Score=25.53 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=22.3
Q ss_pred eecCHHHHHHHHhhcCCCcCCCCCcc
Q 030447 116 QVLTDQEKEKLLKKYSIEEKQLPRML 141 (177)
Q Consensus 116 ~vLs~eEk~~lL~~y~i~~~QLPrI~ 141 (177)
.-|+-+|-+++|++|+++++||-.|.
T Consensus 41 vnLpv~eFn~lL~~~~Lt~~Ql~lIr 66 (90)
T 2lz1_A 41 INLPVVDFNEMMSKEQFNEAQLALIR 66 (90)
T ss_dssp HHSCHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 35789999999999999999987663
No 172
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=20.44 E-value=2.2e+02 Score=19.75 Aligned_cols=47 Identities=28% Similarity=0.379 Sum_probs=31.0
Q ss_pred HHH-HHHHHhhc--CCCcCCC------CCcccCChhhhhhCCCCCCEEEEEecCCC
Q 030447 120 DQE-KEKLLKKY--SIEEKQL------PRMLKKDAIAQYYGLERGQVVKVTYSGEI 166 (177)
Q Consensus 120 ~eE-k~~lL~~y--~i~~~QL------PrI~~sDPvary~Glk~GdVVKI~R~Set 166 (177)
-.+ |+++-++. ++...++ -+++.+|-....||++.|+.|.+..+...
T Consensus 47 V~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g~~i~lv~~~~~ 102 (107)
T 1x1m_A 47 ISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTVHVLRKSWS 102 (107)
T ss_dssp HHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTCEEEEEESSCC
T ss_pred HHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCCCEEEEEeCCCC
Confidence 344 44555556 6766662 34556666677889999999988665443
No 173
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=20.41 E-value=49 Score=21.68 Aligned_cols=16 Identities=13% Similarity=0.148 Sum_probs=11.7
Q ss_pred hhhhhCCCCCCEEEEE
Q 030447 146 IAQYYGLERGQVVKVT 161 (177)
Q Consensus 146 vary~Glk~GdVVKI~ 161 (177)
.|..-|+++||+|-=+
T Consensus 40 pA~~aGl~~GD~I~~i 55 (90)
T 2eaq_A 40 PAEFSQLQVDDEIIAI 55 (90)
T ss_dssp HHHHTTCCTTCEEEEE
T ss_pred hHHHcCCCCCCEEEEE
Confidence 3445699999998544
No 174
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}
Probab=20.40 E-value=38 Score=21.79 Aligned_cols=16 Identities=13% Similarity=0.246 Sum_probs=13.7
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+.+.
T Consensus 17 eLs~~~Gd~i~v~~~~ 32 (65)
T 2fei_A 17 ELELKVGDIIDINEEV 32 (65)
T ss_dssp BCCCCTTCEEECCCCS
T ss_pred ccCCCCCCEEEEEEec
Confidence 5789999999998764
No 175
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=20.30 E-value=71 Score=20.07 Aligned_cols=36 Identities=17% Similarity=0.341 Sum_probs=29.9
Q ss_pred ecCHHHHHHHHhhcCCCcCCCCCcccCChhhhhhCCCCCCEEEEEecC
Q 030447 117 VLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 164 (177)
Q Consensus 117 vLs~eEk~~lL~~y~i~~~QLPrI~~sDPvary~Glk~GdVVKI~R~S 164 (177)
-.|+|.|++|.+. .+|-+++.+|..+.+|.-++..-
T Consensus 9 grt~eqK~~L~~~------------it~~~~~~lg~~~~~v~V~i~E~ 44 (62)
T 3m20_A 9 KLDVGKKREFVER------------LTSVAAEIYGMDRSAITILIHEP 44 (62)
T ss_dssp CCCHHHHHHHHHH------------HHHHHHHHHTCCTTSCEEEEECC
T ss_pred CCCHHHHHHHHHH------------HHHHHHHHhCcCcceEEEEEEEe
Confidence 3799999999885 46889999999999988777654
No 176
>3f8l_A HTH-type transcriptional repressor PHNF; GNTR, HUTC, regulator, UTRA, DNA-bindin transcription regulation; 1.90A {Mycobacterium smegmatis}
Probab=20.30 E-value=47 Score=25.52 Aligned_cols=25 Identities=16% Similarity=0.379 Sum_probs=18.9
Q ss_pred CcccCChhhhhhCCCCCC-EEEEEec
Q 030447 139 RMLKKDAIAQYYGLERGQ-VVKVTYS 163 (177)
Q Consensus 139 rI~~sDPvary~Glk~Gd-VVKI~R~ 163 (177)
.+..++.+|+.||+.+|+ |++|.|-
T Consensus 62 ~~~a~~~ia~~L~l~~g~~v~~i~Rl 87 (201)
T 3f8l_A 62 DLTADEVLAGVLGVDVGAPVLQLERV 87 (201)
T ss_dssp EEECCHHHHHHHTCCTTCEEEEEEEE
T ss_pred EEeCCHHHHHhcCcCCCCeEEEEEEE
Confidence 455667799999999987 6677663
No 177
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}
Probab=20.23 E-value=55 Score=20.87 Aligned_cols=16 Identities=13% Similarity=0.235 Sum_probs=13.8
Q ss_pred hhhCCCCCCEEEEEec
Q 030447 148 QYYGLERGQVVKVTYS 163 (177)
Q Consensus 148 ry~Glk~GdVVKI~R~ 163 (177)
..|.+++||+|.|...
T Consensus 22 ~eLsf~~Gd~i~v~~~ 37 (70)
T 2vkn_A 22 YEISFEQNEILQVSDI 37 (70)
T ss_dssp TBCCBCTTCEEEEECT
T ss_pred CcccCCCCCEEEEEEc
Confidence 4788999999999875
No 178
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.14 E-value=63 Score=21.68 Aligned_cols=16 Identities=13% Similarity=0.264 Sum_probs=13.8
Q ss_pred hhCCCCCCEEEEEecC
Q 030447 149 YYGLERGQVVKVTYSG 164 (177)
Q Consensus 149 y~Glk~GdVVKI~R~S 164 (177)
.|.+++||+|.|+.+.
T Consensus 33 eLsf~~Gd~i~v~~~~ 48 (88)
T 1x2q_A 33 ELTFKHGEIIIVLDDS 48 (88)
T ss_dssp CCCCCSSCEEEEEECS
T ss_pred ccCCCCCCEEEEEEeC
Confidence 4789999999999864
No 179
>2wkd_A ORF34P2; SSB, single-stranded DNA binding, DNA binding protein; 2.10A {Lactococcus phage P2} PDB: 2wkc_A
Probab=20.08 E-value=53 Score=25.16 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=15.5
Q ss_pred CCCCCEEEEEe--cCCCCccceEEEEeC
Q 030447 152 LERGQVVKVTY--SGEITESHVTYRCVW 177 (177)
Q Consensus 152 lk~GdVVKI~R--~SetaG~~v~YR~V~ 177 (177)
..+||+|-|+- ++++.|.|++|-.++
T Consensus 54 v~~GDivTvsgri~~ke~G~y~nyNf~f 81 (119)
T 2wkd_A 54 IQMGDTVTVSGRVQAKESGEYVNYNFVF 81 (119)
T ss_dssp CCTTCEEEEEEEEEEC------CEEEEE
T ss_pred ccCCcEEEEeceeeeeccCceEeeeeec
Confidence 48999999964 478999999997653
Done!