BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030448
(177 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q940S5|COPZ1_ARATH Coatomer subunit zeta-1 OS=Arabidopsis thaliana GN=At1g60970 PE=2
SV=1
Length = 177
Score = 297 bits (760), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 141/177 (79%), Positives = 158/177 (89%)
Query: 1 MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAML 60
M+ P +KNILLLDSEGKRVAVKYYS+DWPTNSA+EAFEK+VFTKTQKTNARTE E+ L
Sbjct: 1 MELPPKVKNILLLDSEGKRVAVKYYSDDWPTNSAQEAFEKSVFTKTQKTNARTEVEVTAL 60
Query: 61 EGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLIL 120
E N++VYKFVQDLHFFVTGGE+ENELILA+VL+G FDAV LLLR NVDK+EAL+NLDLI
Sbjct: 61 ENNIVVYKFVQDLHFFVTGGEEENELILASVLEGLFDAVTLLLRSNVDKREALDNLDLIF 120
Query: 121 LCLDEIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 177
L DEI+DGGI+LETDANVIAGK +S D APLSEQTISQALATAREHLTRSL+K
Sbjct: 121 LSFDEIIDGGIVLETDANVIAGKAGINSTDPNAPLSEQTISQALATAREHLTRSLMK 177
>sp|Q6Z844|COPZ2_ORYSJ Coatomer subunit zeta-2 OS=Oryza sativa subsp. japonica GN=COPZ2
PE=2 SV=1
Length = 182
Score = 290 bits (741), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 137/176 (77%), Positives = 161/176 (91%)
Query: 2 DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLE 61
++CPS+KNILLLDSEGKRVAVKY+S+DW +N++K AFEK+VFTKT KTNAR+EAEI + +
Sbjct: 7 ESCPSVKNILLLDSEGKRVAVKYFSDDWSSNASKLAFEKSVFTKTLKTNARSEAEITLFD 66
Query: 62 GNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILL 121
G ++VYKFVQDLHFFVT G+DENELI+A VLQGF D+VGLLLRG+V+K+ ALENLDLILL
Sbjct: 67 GYIVVYKFVQDLHFFVTAGDDENELIIANVLQGFSDSVGLLLRGDVEKRTALENLDLILL 126
Query: 122 CLDEIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 177
C+DEIVDGGIILETDAN IAGKVA+++VD AP SEQTISQALATAREHL RSLLK
Sbjct: 127 CIDEIVDGGIILETDANTIAGKVATNAVDGSAPFSEQTISQALATAREHLARSLLK 182
>sp|Q84LG4|COPZ2_ARATH Coatomer subunit zeta-2 OS=Arabidopsis thaliana GN=At3g09800 PE=2
SV=1
Length = 179
Score = 288 bits (736), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 136/175 (77%), Positives = 154/175 (88%)
Query: 2 DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLE 61
D+CP +KNILLLDSEGKRVAVKYYS+DWPTN+AK +FEK VF+KT KTNARTEAEI +L+
Sbjct: 4 DSCPLVKNILLLDSEGKRVAVKYYSDDWPTNAAKLSFEKYVFSKTSKTNARTEAEITLLD 63
Query: 62 GNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILL 121
N+IVYKF QDLHFFVTGGE+ENELILA+VLQGFFDAV LLLR NV+K EALENLDLI L
Sbjct: 64 SNIIVYKFAQDLHFFVTGGENENELILASVLQGFFDAVALLLRSNVEKMEALENLDLIFL 123
Query: 122 CLDEIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLL 176
CLDE+VD G++LETD NVIAGKVA S + LSEQT++QALATAREHL RSLL
Sbjct: 124 CLDEMVDQGVVLETDPNVIAGKVAMQSTEASGSLSEQTLTQALATAREHLARSLL 178
>sp|Q8H1F4|COPZ3_ARATH Coatomer subunit zeta-3 OS=Arabidopsis thaliana GN=At4g08520 PE=2
SV=1
Length = 181
Score = 285 bits (730), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 134/175 (76%), Positives = 154/175 (88%)
Query: 2 DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLE 61
D+CP +KNILLLDSEGKRVAVKYYS+DW TN++K AFEK VF+KT KTNARTEAEI +LE
Sbjct: 6 DSCPLVKNILLLDSEGKRVAVKYYSDDWATNASKLAFEKYVFSKTSKTNARTEAEITLLE 65
Query: 62 GNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILL 121
N++VYKF QDLHFFVTGGE+ENEL+L++VLQGFFDAV LLLR NV+K EALENLDLI L
Sbjct: 66 SNIVVYKFAQDLHFFVTGGENENELVLSSVLQGFFDAVALLLRNNVEKMEALENLDLIFL 125
Query: 122 CLDEIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLL 176
CLDE+VD G++LETDANVIAGKVA S + LSEQT++QALATAREHL RSLL
Sbjct: 126 CLDEMVDQGMVLETDANVIAGKVAMQSAEASGSLSEQTLTQALATAREHLARSLL 180
>sp|Q9MAX5|COPZ1_ORYSJ Coatomer subunit zeta-1 OS=Oryza sativa subsp. japonica GN=COPZ1
PE=2 SV=1
Length = 177
Score = 274 bits (700), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 129/176 (73%), Positives = 154/176 (87%)
Query: 1 MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAML 60
M++CPS+KNILLLDSEGKRVAVKYY++DWPT SAK AFEK+VF KTQK A EAEI M
Sbjct: 1 MESCPSVKNILLLDSEGKRVAVKYYTDDWPTLSAKLAFEKSVFVKTQKATAGAEAEIVMF 60
Query: 61 EGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLIL 120
+G+++VYKF+QDLHFFVTGGE+ENELILA+VLQGF DAV ++LR NVDK+ ALENLDLIL
Sbjct: 61 DGHIVVYKFIQDLHFFVTGGEEENELILASVLQGFTDAVDIILRNNVDKRTALENLDLIL 120
Query: 121 LCLDEIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLL 176
LCLDEIVDGGI+LET+ +VIA KV++H ++ L+EQTI QAL TAREHLT+SLL
Sbjct: 121 LCLDEIVDGGIVLETEGSVIAEKVSAHGIEGATSLAEQTIVQALTTAREHLTKSLL 176
>sp|Q5NA06|COPZ3_ORYSJ Coatomer subunit zeta-3 OS=Oryza sativa subsp. japonica
GN=Os01g0838800 PE=2 SV=1
Length = 177
Score = 258 bits (658), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 118/176 (67%), Positives = 146/176 (82%)
Query: 1 MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAML 60
M++CPS+KNIL+LDSEGKRVAVKYYS+DWP+ S+K+AFEK+VF KTQKT+ARTEAEI M
Sbjct: 1 MESCPSVKNILVLDSEGKRVAVKYYSDDWPSLSSKQAFEKSVFAKTQKTSARTEAEIVMF 60
Query: 61 EGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLIL 120
+ +VYKF+QDLHFFVTGG++ENELILA+VLQGF +A+ LLR V ++ ALENLDLI
Sbjct: 61 DSYFVVYKFIQDLHFFVTGGDEENELILASVLQGFSEAIDYLLRNKVHRRAALENLDLIF 120
Query: 121 LCLDEIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLL 176
LCLDE+VDGGI+LETDA I KV+ H ++ L+EQ +S ALATAREH RS+
Sbjct: 121 LCLDEVVDGGIVLETDAKAILEKVSGHGLEGSGSLTEQKLSSALATAREHFARSIF 176
>sp|P35604|COPZ1_BOVIN Coatomer subunit zeta-1 OS=Bos taurus GN=COPZ1 PE=1 SV=2
Length = 177
Score = 159 bits (402), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 81/172 (47%), Positives = 119/172 (69%), Gaps = 6/172 (3%)
Query: 6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
++K IL+LD++G R+ KYY + +P+ ++AFEK +F KT RT++EIA+LEG +
Sbjct: 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67
Query: 66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDE 125
VYK DL+F+V G ENEL+L TVL FD++ +LR NV+K+ LEN++ + L +DE
Sbjct: 68 VYKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 127
Query: 126 IVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 177
IVDGG+ILE+D + +VA DV PL+EQT+SQ L +A+E + SLL+
Sbjct: 128 IVDGGVILESDPQQVVHRVALRGEDV--PLTEQTVSQVLQSAKEQIKWSLLR 177
>sp|Q5R5F2|COPZ1_PONAB Coatomer subunit zeta-1 OS=Pongo abelii GN=COPZ1 PE=2 SV=1
Length = 177
Score = 157 bits (397), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 118/172 (68%), Gaps = 6/172 (3%)
Query: 6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
++K IL+LD++G R+ KYY + +P+ ++AFEK +F KT RT++EIA+LEG +
Sbjct: 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67
Query: 66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDE 125
VYK DL+F+V G ENEL+L VL FD++ +LR NV+K+ LEN++ + L +DE
Sbjct: 68 VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 127
Query: 126 IVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 177
IVDGG+ILE+D + +VA DV PL+EQT+SQ L +A+E + SLL+
Sbjct: 128 IVDGGVILESDPQQVVHRVALRGEDV--PLTEQTVSQVLQSAKEQIKWSLLR 177
>sp|P61924|COPZ1_MOUSE Coatomer subunit zeta-1 OS=Mus musculus GN=Copz1 PE=2 SV=1
Length = 177
Score = 157 bits (397), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 118/172 (68%), Gaps = 6/172 (3%)
Query: 6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
++K IL+LD++G R+ KYY + +P+ ++AFEK +F KT RT++EIA+LEG +
Sbjct: 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67
Query: 66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDE 125
VYK DL+F+V G ENEL+L VL FD++ +LR NV+K+ LEN++ + L +DE
Sbjct: 68 VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 127
Query: 126 IVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 177
IVDGG+ILE+D + +VA DV PL+EQT+SQ L +A+E + SLL+
Sbjct: 128 IVDGGVILESDPQQVVHRVALRGEDV--PLTEQTVSQVLQSAKEQIKWSLLR 177
>sp|P61923|COPZ1_HUMAN Coatomer subunit zeta-1 OS=Homo sapiens GN=COPZ1 PE=1 SV=1
Length = 177
Score = 157 bits (397), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 118/172 (68%), Gaps = 6/172 (3%)
Query: 6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
++K IL+LD++G R+ KYY + +P+ ++AFEK +F KT RT++EIA+LEG +
Sbjct: 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67
Query: 66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDE 125
VYK DL+F+V G ENEL+L VL FD++ +LR NV+K+ LEN++ + L +DE
Sbjct: 68 VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 127
Query: 126 IVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 177
IVDGG+ILE+D + +VA DV PL+EQT+SQ L +A+E + SLL+
Sbjct: 128 IVDGGVILESDPQQVVHRVALRGEDV--PLTEQTVSQVLQSAKEQIKWSLLR 177
>sp|Q9JHH9|COPZ2_MOUSE Coatomer subunit zeta-2 OS=Mus musculus GN=Copz2 PE=2 SV=1
Length = 205
Score = 144 bits (363), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 111/172 (64%), Gaps = 6/172 (3%)
Query: 6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
+IK + +LD++G+R+ KYY + +P+ + FEK VF KT +RTE+EIA L G I
Sbjct: 40 TIKAVFILDNDGRRLLAKYYDDTFPSVKEQMVFEKNVFNKT----SRTESEIAFLGGMTI 95
Query: 66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDE 125
VYK D+ +V G ENEL+L +VL FD++ +LR NV+K+ LEN+D L LDE
Sbjct: 96 VYKSSIDIFLYVVGSSSENELMLMSVLACLFDSLSHILRKNVEKRWLLENMDGAFLVLDE 155
Query: 126 IVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 177
VDGG+ILE+D + KV + D G L+EQ+++Q L +A+E + SLLK
Sbjct: 156 TVDGGVILESDPQQVIQKVNFRTDDSG--LTEQSVAQVLQSAKEQIKWSLLK 205
>sp|Q9P299|COPZ2_HUMAN Coatomer subunit zeta-2 OS=Homo sapiens GN=COPZ2 PE=2 SV=1
Length = 210
Score = 142 bits (358), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 111/172 (64%), Gaps = 6/172 (3%)
Query: 6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
+IK + +LD++G+R+ KYY + +P+ + FEK VF KT +RTE+EIA G I
Sbjct: 45 TIKAVFILDNDGRRLLAKYYDDTFPSMKEQMVFEKNVFNKT----SRTESEIAFFGGMTI 100
Query: 66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDE 125
VYK DL +V G ENEL+L +VL F+++ +LR NV+K+ LEN+D L LDE
Sbjct: 101 VYKNSIDLFLYVVGSSYENELMLMSVLTCLFESLNHMLRKNVEKRWLLENMDGAFLVLDE 160
Query: 126 IVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 177
IVDGG+ILE+D + KV + D G L+EQ+++Q L +A+E + SLLK
Sbjct: 161 IVDGGVILESDPQQVIQKVNFRADDGG--LTEQSVAQVLQSAKEQIKWSLLK 210
>sp|O17901|COPZ_CAEEL Probable coatomer subunit zeta OS=Caenorhabditis elegans
GN=F59E10.3 PE=3 SV=1
Length = 184
Score = 126 bits (316), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 112/186 (60%), Gaps = 14/186 (7%)
Query: 1 MDTCP----SIKNILLLDSEGKRVAVKYYSND-WPTNSAKEAFEKAVFTKTQKTNARTEA 55
DT P SIK I++LD +G RV KYY + T ++AFEK++F+KT + T A
Sbjct: 4 FDTNPTSLYSIKGIVILDQDGNRVLAKYYDRTTFGTVKEQKAFEKSLFSKTSRN---TSA 60
Query: 56 EIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALEN 115
+I +L+G +Y+ DL+F+V G ENEL L L +DAV ++LR NV+KK +++
Sbjct: 61 DILLLDGVTCLYRSNVDLYFYVLGSTRENELFLDATLTCLYDAVSVVLRKNVEKKALIDS 120
Query: 116 LDLILLCLDEIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQA----LATAREHL 171
+D I+L +DEI D GII+ETDA + + A S +V S+Q++SQ + +A E
Sbjct: 121 MDTIMLIIDEICDEGIIMETDAQAVVQRTALKSDEV--SFSDQSVSQIGFSFMKSANEQF 178
Query: 172 TRSLLK 177
SLLK
Sbjct: 179 KWSLLK 184
>sp|Q54HD4|COPZA_DICDI Probable coatomer subunit zeta-A OS=Dictyostelium discoideum
GN=copZa PE=3 SV=1
Length = 175
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 107/175 (61%), Gaps = 12/175 (6%)
Query: 6 SIKNILLLDS-EGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNV 64
++ + +LDS +G+RV KYY+ND+ T ++AFEK VF KT K N EI +L+ +
Sbjct: 7 TVTSFFILDSSKGERVIAKYYNNDFDTLQKQKAFEKKVFDKTSKVNFG--GEITLLDNYL 64
Query: 65 IVYKFVQDLHFFVTGGEDENELILATVLQGFFDAV-GLLLRGNVDKKEALENLDLILLCL 123
+VYK ++ ++ G +++NE+ L VL F D + L ++KK L+ ++ LL L
Sbjct: 65 VVYKSFSNIIIYMVGDQNQNEIALLYVLNSFIDTLQNLFENSQINKKLILDGINYTLLTL 124
Query: 124 DEIVDGGIILETDANVIAGKVASHSVDVGAPLS---EQTISQALATAREHLTRSL 175
DEI+DGGII+E+D+ VIA +V + AP + +++I++A+ + +E L L
Sbjct: 125 DEIIDGGIIMESDSAVIADRVG-----IKAPDNDDLDESINKAVTSVKEQLFNFL 174
>sp|O74891|COPZ_SCHPO Probable coatomer subunit zeta OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ret3 PE=3 SV=1
Length = 190
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 100/188 (53%), Gaps = 17/188 (9%)
Query: 3 TCPSIKNILLLDSEGKRVAVKYYSNDWPT-------NSAKE--AFEKAVFTKTQKTNART 53
T ++ L+LDS GKR+ KYY+ NS KE FEK +F KT KT
Sbjct: 4 TLYAVNAFLILDSSGKRIFTKYYAPPHLKEGEGGVFNSVKEEKTFEKGLFEKTWKT---- 59
Query: 54 EAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAL 113
+ +I +G ++V V D+ F++ GG +ENE++L L+ DA+ LL + DK+ L
Sbjct: 60 QNDILTYDGKLVVMLTVMDVIFYIVGGMEENEVMLYECLRSIRDALELLFKYVPDKRTLL 119
Query: 114 ENLDLILLCLDEIVDGGIILETDANVIAGKVASHSVD----VGAPLSEQTISQALATARE 169
EN D +++ +DE +D G+ILET+ +IA +V V + + E + ARE
Sbjct: 120 ENYDQLVIVVDETIDDGVILETEPALIAARVTKGPVSEAQAIVSDFKEMGFMNSFQKARE 179
Query: 170 HLTRSLLK 177
+T +LK
Sbjct: 180 KITERILK 187
>sp|P53600|COPZ_YEAST Coatomer subunit zeta OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RET3 PE=1 SV=1
Length = 189
Score = 94.0 bits (232), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 87/150 (58%), Gaps = 14/150 (9%)
Query: 6 SIKNILLLDSEGKRVAVKYYSNDWPT--------NSAKEA--FEKAVFTKTQKTNARTEA 55
+++ +L+LD +G+R+ KYY + NS K+ FEK ++ KT K ++
Sbjct: 8 TVQAVLILDQQGERIYAKYYQPPHRSDEGHQLLFNSVKKQKEFEKQLYRKTHKQDS---- 63
Query: 56 EIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALEN 115
EI + E ++++YK D+ ++ +ENE++L A+ L+L +DKK EN
Sbjct: 64 EILIFEDHLVLYKEYIDITIYLVASLEENEIVLQQGFSAIRGALDLILNSGMDKKNIQEN 123
Query: 116 LDLILLCLDEIVDGGIILETDANVIAGKVA 145
D++LL +DE +D G+ILETD+N IA +V+
Sbjct: 124 YDMVLLAIDETIDNGVILETDSNTIASRVS 153
>sp|Q54CA7|COPZB_DICDI Probable coatomer subunit zeta-B OS=Dictyostelium discoideum
GN=copZb PE=3 SV=1
Length = 178
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 90/182 (49%), Gaps = 28/182 (15%)
Query: 2 DTCPSIKNILLLDSEGKRVAVKYYSNDWPTN-----SAKEAFEKAVFTKTQKTNARTEAE 56
+T IK I++LD+ GKR+ +Y D P + K+ FEK +F K + +N E
Sbjct: 3 ETVYQIKAIIVLDNNGKRLCSCFY--DPPGTPITPLTEKDKFEKLIFEKCKTSNC----E 56
Query: 57 IAMLEGNVIVYKFVQDLHFFVTGGE-DENEL----ILATVLQGFFDAVGLLLRGNVDKKE 111
+ +++ V++ D+ FV G + NEL +L T++ F A + KK
Sbjct: 57 LEIIDNKVVIGSKQSDVWIFVVGNSLNSNELALLDVLNTLISLFKKACATDESIMITKKT 116
Query: 112 ALENLDLILLCLDEIVDGGIILETDANVIAGKVASHSVDVGAPLSE---QTISQALATAR 168
LEN LI L +DEIV GII E D I +V P+++ Q++++A+ A+
Sbjct: 117 FLENYALIRLYIDEIVSDGIIFEVDEETILNRV---------PIADNAAQSLNEAIEMAK 167
Query: 169 EH 170
E
Sbjct: 168 EK 169
>sp|Q553S2|AP3S_DICDI AP-3 complex subunit sigma OS=Dictyostelium discoideum GN=ap3s1
PE=3 SV=1
Length = 171
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 16/144 (11%)
Query: 7 IKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLE-GN-- 63
IK+IL++++ GK +K+Y + + ++ + +F K RTE LE GN
Sbjct: 2 IKSILIINNHGKPRLIKFY--EHYSEEKQQQIIRELFLLVSK---RTERSCNFLEIGNNS 56
Query: 64 -------VIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENL 116
I+Y+ L F E+EL + ++Q F +++ NV + + + ++
Sbjct: 57 NIFDKDTKIIYRHYATLFFIFCVDSSESELSIIDLIQTFVESLDKCFE-NVCELDLIFHI 115
Query: 117 DLILLCLDEIVDGGIILETDANVI 140
D + LDE+V GG++LET+ +I
Sbjct: 116 DKVHYILDEMVMGGLVLETNPTII 139
>sp|O82201|AP4S_ARATH AP-4 complex subunit sigma OS=Arabidopsis thaliana GN=At2g19790
PE=2 SV=1
Length = 143
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 9/138 (6%)
Query: 7 IKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGN--V 64
I+ IL+++ +G+ +YY +W T + A E + +K AR + + + +E
Sbjct: 3 IRFILMVNKQGQTRLAQYY--EWLTLEERRALEGEI---VRKCLARNDQQCSFVEHRNYK 57
Query: 65 IVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLD 124
IVY+ L F V +DENEL + + + + GNV + + + +L+ L+
Sbjct: 58 IVYRRYASLFFMVGVDDDENELAILEFIHLLVETMDKHF-GNVCELDIMFHLEKAHFMLE 116
Query: 125 EIVDGGIILETD-ANVIA 141
E+V G I+ET AN+++
Sbjct: 117 EMVMNGCIVETSKANILS 134
>sp|Q8VZ37|AP3S_ARATH AP-3 complex subunit sigma OS=Arabidopsis thaliana GN=At3g50860
PE=2 SV=1
Length = 166
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 67/135 (49%), Gaps = 7/135 (5%)
Query: 7 IKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTK--TQKTNARTEAEIAMLEG-- 62
IK +++++++GK K+Y D+ ++ + VF+ ++ N EI L G
Sbjct: 2 IKAVMMMNTQGKPRLAKFY--DYLPVEKQQELIRGVFSVLCSRPENVSNFLEIESLFGPD 59
Query: 63 NVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLC 122
+ +VYK L+F + ENEL + ++Q + + NV + + + N +
Sbjct: 60 SRLVYKHYATLYFVLVFDGSENELAMLDLIQVLVETLDKCF-SNVCELDIVFNYSKMHAV 118
Query: 123 LDEIVDGGIILETDA 137
LDEIV GG +LET +
Sbjct: 119 LDEIVFGGQVLETSS 133
>sp|Q9DCR2|AP3S1_MOUSE AP-3 complex subunit sigma-1 OS=Mus musculus GN=Ap3s1 PE=1 SV=2
Length = 193
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 20/149 (13%)
Query: 7 IKNILLLDSEGKRVAVKYY---SNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEG- 62
IK IL+ ++ GK K+Y S D +E F + R E LEG
Sbjct: 2 IKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETF--------HLVSKRDENVCNFLEGG 53
Query: 63 -------NVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALEN 115
N ++Y+ L+F E+EL + ++Q F + + NV + + + +
Sbjct: 54 LLIGGSDNKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFE-NVCELDLIFH 112
Query: 116 LDLILLCLDEIVDGGIILETDANVIAGKV 144
+D + L E+V GG++LET+ N I ++
Sbjct: 113 VDKVHNILAEMVMGGMVLETNMNEIVTQI 141
>sp|Q92572|AP3S1_HUMAN AP-3 complex subunit sigma-1 OS=Homo sapiens GN=AP3S1 PE=1 SV=1
Length = 193
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 20/149 (13%)
Query: 7 IKNILLLDSEGKRVAVKYY---SNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEG- 62
IK IL+ ++ GK K+Y S D +E F + R E LEG
Sbjct: 2 IKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETF--------HLVSKRDENVCNFLEGG 53
Query: 63 -------NVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALEN 115
N ++Y+ L+F E+EL + ++Q F + + NV + + + +
Sbjct: 54 LLIGGSDNKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFE-NVCELDLIFH 112
Query: 116 LDLILLCLDEIVDGGIILETDANVIAGKV 144
+D + L E+V GG++LET+ N I ++
Sbjct: 113 VDKVHNILAEMVMGGMVLETNMNEIVTQI 141
>sp|Q2YDH6|AP3S1_BOVIN AP-3 complex subunit sigma-1 OS=Bos taurus GN=AP3S1 PE=2 SV=1
Length = 193
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 20/149 (13%)
Query: 7 IKNILLLDSEGKRVAVKYY---SNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEG- 62
IK IL+ ++ GK K+Y S D +E F + R E LEG
Sbjct: 2 IKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETF--------HLVSKRDENVCNFLEGG 53
Query: 63 -------NVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALEN 115
N ++Y+ L+F E+EL + ++Q F + + NV + + + +
Sbjct: 54 LLIGGSDNKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFE-NVCELDLIFH 112
Query: 116 LDLILLCLDEIVDGGIILETDANVIAGKV 144
+D + L E+V GG++LET+ N I ++
Sbjct: 113 VDKVHNILAEMVMGGMVLETNMNEIVTQI 141
>sp|Q5RDP9|AP3S2_PONAB AP-3 complex subunit sigma-2 OS=Pongo abelii GN=AP3S2 PE=2 SV=1
Length = 193
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 72/151 (47%), Gaps = 16/151 (10%)
Query: 7 IKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIA-MLEGNVI 65
I+ IL+ ++ GK V++Y +P E ++ + +T + + I LEG +
Sbjct: 2 IQAILVFNNHGKPRLVRFYQR-FP-----EEIQQQIVRETFHLVLKRDDNICNFLEGGSL 55
Query: 66 V--------YKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLD 117
+ Y+ L+F E+EL + ++Q F + + NV + + + ++D
Sbjct: 56 IGGSDYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFE-NVCELDLIFHMD 114
Query: 118 LILLCLDEIVDGGIILETDANVIAGKVASHS 148
+ L E+V GG++LET+ N I ++ + +
Sbjct: 115 KVHYILQEVVMGGMVLETNMNEIVAQIEAQN 145
>sp|Q8BSZ2|AP3S2_MOUSE AP-3 complex subunit sigma-2 OS=Mus musculus GN=Ap3s2 PE=1 SV=1
Length = 193
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 72/151 (47%), Gaps = 16/151 (10%)
Query: 7 IKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIA-MLEGNVI 65
I+ IL+ ++ GK V++Y +P E ++ + +T + + I LEG +
Sbjct: 2 IQAILVFNNHGKPRLVRFYQR-FP-----EEIQQQIVRETFHLVLKRDDNICNFLEGGSL 55
Query: 66 V--------YKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLD 117
+ Y+ L+F E+EL + ++Q F + + NV + + + ++D
Sbjct: 56 IGGSDYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFE-NVCELDLIFHMD 114
Query: 118 LILLCLDEIVDGGIILETDANVIAGKVASHS 148
+ L E+V GG++LET+ N I ++ + +
Sbjct: 115 KVHYILQEVVMGGMVLETNMNEIVAQIEAQN 145
>sp|P59780|AP3S2_HUMAN AP-3 complex subunit sigma-2 OS=Homo sapiens GN=AP3S2 PE=2 SV=1
Length = 193
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 72/151 (47%), Gaps = 16/151 (10%)
Query: 7 IKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIA-MLEGNVI 65
I+ IL+ ++ GK V++Y +P E ++ + +T + + I LEG +
Sbjct: 2 IQAILVFNNHGKPRLVRFYQR-FP-----EEIQQQIVRETFHLVLKRDDNICNFLEGGSL 55
Query: 66 V--------YKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLD 117
+ Y+ L+F E+EL + ++Q F + + NV + + + ++D
Sbjct: 56 IGGSDYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFE-NVCELDLIFHMD 114
Query: 118 LILLCLDEIVDGGIILETDANVIAGKVASHS 148
+ L E+V GG++LET+ N I ++ + +
Sbjct: 115 KVHYILQEVVMGGMVLETNMNEIVAQIEAQN 145
>sp|Q1JQA3|AP3S2_BOVIN AP-3 complex subunit sigma-2 OS=Bos taurus GN=AP3S2 PE=2 SV=1
Length = 193
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 72/151 (47%), Gaps = 16/151 (10%)
Query: 7 IKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIA-MLEGNVI 65
I+ IL+ ++ GK V++Y +P E ++ + +T + + I LEG +
Sbjct: 2 IQAILVFNNHGKPRLVRFYQR-FP-----EEIQQQIVRETFHLVLKRDDNICNFLEGGSL 55
Query: 66 V--------YKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLD 117
+ Y+ L+F E+EL + ++Q F + + NV + + + ++D
Sbjct: 56 IGGSDYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFE-NVCELDLIFHMD 114
Query: 118 LILLCLDEIVDGGIILETDANVIAGKVASHS 148
+ L E+V GG++LET+ N I ++ + +
Sbjct: 115 KVHYILQEVVMGGMVLETNMNEIVAQIEAQN 145
>sp|B0G185|AP1S2_DICDI AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum GN=ap1s2
PE=3 SV=1
Length = 154
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 7/147 (4%)
Query: 10 ILLLDSEGKRVAVKYYSNDWP-TNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYK 68
+LLL +GK K+YS P TN K F + + + + E +I +K
Sbjct: 6 LLLLSRQGKTRLTKWYS---PFTNKEKSRFTREIGNMVLNRPPKLCNFLEWKEYKII-FK 61
Query: 69 FVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVD 128
L+F V ++NELI+ ++ F + + GNV + + + N LDE++
Sbjct: 62 RYASLYFVVCCDREDNELIVLEIIHHFVEILDRYF-GNVCELDLIFNFHKAYYILDELIM 120
Query: 129 GGIILETDANVIAGKVASHSVDV-GAP 154
G + ET + ++ + G P
Sbjct: 121 AGELQETSKKTVLRLISQQDTLLEGGP 147
>sp|Q09905|AP3S_SCHPO AP-3 complex subunit sigma OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=aps3 PE=3 SV=1
Length = 165
Score = 37.4 bits (85), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 12/140 (8%)
Query: 7 IKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI- 65
I + + +++GK K+Y+ P + + + +K + + R LE N+I
Sbjct: 2 IYAVFIFNNKGKPRLTKFYT---PIDESIQ--QKLIGDIYAAVSTRPPTACNFLESNLIA 56
Query: 66 -----VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLIL 120
+Y+ L+F E E+EL + ++Q F +A+ NV + + + I
Sbjct: 57 GKNRIIYRQYATLYFVFVVDEGESELGILDLIQVFVEALDRCF-NNVCELDLVFKFQEIH 115
Query: 121 LCLDEIVDGGIILETDANVI 140
L E+V GG++LET+ N I
Sbjct: 116 AILAEVVSGGLVLETNLNEI 135
>sp|P47064|AP3S_YEAST AP-3 complex subunit sigma OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=APS3 PE=1 SV=1
Length = 194
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 65 IVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLD 124
I+YK L+F + E+EL + ++Q F +++ V++ + + N + L+
Sbjct: 75 IIYKNYATLYFTFIVDDQESELAILDLIQTFVESLDRCFT-EVNELDLIFNWQTLESVLE 133
Query: 125 EIVDGGIILETDANVIAGKV 144
EIV GG+++ET+ N I V
Sbjct: 134 EIVQGGMVIETNVNRIVASV 153
>sp|Q09718|AP2M_SCHPO AP-2 complex subunit mu OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=apm4 PE=1 SV=1
Length = 446
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 60/139 (43%), Gaps = 7/139 (5%)
Query: 7 IKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIV 66
I + + + +G + K + +D S E F A+ T T + I + + +
Sbjct: 2 ISGLFIFNLKGDTLICKTFRHDL-KKSVTEIFRVAILTNTDYRHP-----IVSIGSSTYI 55
Query: 67 YKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEI 126
Y +DL+ + N +I+ L+ + G +++ +N+ I LDE+
Sbjct: 56 YTKHEDLYVVAITKGNPNVMIVLEFLESLIQDLTHYF-GKLNENTVKDNVSFIFELLDEM 114
Query: 127 VDGGIILETDANVIAGKVA 145
+D GII T+ + +A V+
Sbjct: 115 IDYGIIQTTEPDALARSVS 133
>sp|Q9P7N2|AP1S1_SCHPO AP-1 complex subunit sigma-1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=vas2 PE=1 SV=1
Length = 162
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 7/142 (4%)
Query: 6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
SIK LL+ +GK K+++ AK + + T+K E +G I
Sbjct: 2 SIKFFLLVSRQGKVRLAKWFNTLSIKERAKIIRDVSSLVITRKPKMCNFVE---YKGEKI 58
Query: 66 VYKFVQDLHFFVTGGE-DENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLD 124
VY+ L FFV G E D+NELI+ V+ F + + GNV + + + N + ++
Sbjct: 59 VYRRYASL-FFVCGIEQDDNELIILEVIHKFVECLDKYF-GNVCELDLIFNFEKAYYVME 116
Query: 125 EIVDGGIILETD-ANVIAGKVA 145
E++ G + E+ NV++ +A
Sbjct: 117 ELLLAGELQESSKTNVLSAVLA 138
>sp|F1QH17|MCA3A_DANRE Protein-methionine sulfoxide oxidase mical3a OS=Danio rerio
GN=mical3a PE=2 SV=2
Length = 1994
Score = 34.3 bits (77), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 63 NVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKK 110
N++ YK D H+FV + ++ L +L + D LL R NVD+K
Sbjct: 292 NIVYYK--DDTHYFVMTAKKQSLLEKGVILHDYADTEMLLSRANVDQK 337
>sp|Q9Y7L6|AP2S_SCHPO AP-2 complex subunit sigma OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=aps2 PE=3 SV=1
Length = 143
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 65/141 (46%), Gaps = 5/141 (3%)
Query: 7 IKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKA-VFTKTQKTNARTEAEIAMLEGNVI 65
I+ IL+ + GK KYY P + ++ KA + + N + +A E + +
Sbjct: 2 IQFILIQNRHGKNRLSKYYV---PFDDDEKVRLKARIHQLISQRNQKFQANFLEWENSKL 58
Query: 66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDE 125
VY+ L+F +N+L + ++ F + + GNV + + + N + LDE
Sbjct: 59 VYRRYAGLYFCFCVDSTDNDLAILEMIHFFVEILDSFF-GNVCELDLIFNFYKVSAILDE 117
Query: 126 IVDGGIILETDANVIAGKVAS 146
I+ GG I E++ + ++ +
Sbjct: 118 IILGGEIGESNKKSVLERIEA 138
>sp|Q75F71|AP3S_ASHGO AP-3 complex subunit sigma OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=APS3 PE=3 SV=1
Length = 185
Score = 33.9 bits (76), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 65 IVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLD 124
I+YK L+F + E+EL + ++Q F +A+ V++ + + N + L+
Sbjct: 71 IIYKNYATLYFTFIVDDQESELAILDLIQTFVEALDRCF-AEVNELDLIFNWQTLESVLE 129
Query: 125 EIVDGGIILETDANVIAGKV 144
EI+ GG+++ET+ I V
Sbjct: 130 EIIQGGMVIETNVKKIVETV 149
>sp|Q9WVL1|AP4S1_MOUSE AP-4 complex subunit sigma-1 OS=Mus musculus GN=Ap4s1 PE=2 SV=1
Length = 144
Score = 33.9 bits (76), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 66/137 (48%), Gaps = 7/137 (5%)
Query: 7 IKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIV 66
IK L+++ +G+ KYY + + K A + +K+ + + + + ++
Sbjct: 2 IKFFLMVNKQGQTRLSKYYEH---VDINKRALLETEVSKSCLSRSSEQCSFIEYKDFKLI 58
Query: 67 YKFVQDLHFFVTGGEDENELILATVLQGFFDAV-GLLLRGNVDKKEALENLDLILLCLDE 125
Y+ L V + ENE+ + + F + + G R V + + + NLD + + LDE
Sbjct: 59 YRQYAALFVVVGVNDTENEMAIYEFIHNFVEVLDGYFSR--VSELDIMFNLDKVHIILDE 116
Query: 126 IVDGGIILETD-ANVIA 141
+V G I+ET+ A ++A
Sbjct: 117 MVLNGCIVETNRARILA 133
>sp|Q5FFD8|RPOC_EHRRG DNA-directed RNA polymerase subunit beta' OS=Ehrlichia ruminantium
(strain Gardel) GN=rpoC PE=3 SV=1
Length = 1411
Score = 33.1 bits (74), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 121 LCLDEIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQA 163
+ ++DGG ++ET N+I G+VA +VD+ P++E+ + A
Sbjct: 815 FAMRSVIDGGTVVETLDNIILGRVA--AVDIYNPITEELLVNA 855
>sp|Q96PC3|AP1S3_HUMAN AP-1 complex subunit sigma-3 OS=Homo sapiens GN=AP1S3 PE=2 SV=1
Length = 154
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 68/160 (42%), Gaps = 10/160 (6%)
Query: 7 IKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIV 66
I ILL +GK K+Y + ++ + + RT + + E +V
Sbjct: 2 IHFILLFSRQGKLRLQKWYIT--LPDKERKKITREIVQIILSRGHRTSSFVDWKELK-LV 58
Query: 67 YKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEI 126
YK L+F +NEL+ ++ + + + GNV + + + N + LDE
Sbjct: 59 YKRYASLYFCCAIENQDNELLTLEIVHRYVELLDKYF-GNVCELDIIFNFEKAYFILDEF 117
Query: 127 VDGGIILETDANVIAGKVASHSVDVGAPLSE-QTISQALA 165
+ GG I ET + K+A +++ L E T+SQ +
Sbjct: 118 IIGGEIQET-----SKKIAVKAIEDSDMLQEVSTVSQTMG 152
>sp|Q2GFP4|RPOC_EHRCR DNA-directed RNA polymerase subunit beta' OS=Ehrlichia chaffeensis
(strain Arkansas) GN=rpoC PE=3 SV=1
Length = 1410
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 121 LCLDEIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQA 163
+ +V+GG ++ET N+I G+VA +VDV P++E+ + +A
Sbjct: 816 FAIRSVVEGGTVVETLDNIILGRVA--AVDVYNPITEELLVKA 856
>sp|Q3YST4|RPOC_EHRCJ DNA-directed RNA polymerase subunit beta' OS=Ehrlichia canis
(strain Jake) GN=rpoC PE=3 SV=1
Length = 1410
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 121 LCLDEIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQA 163
+ +V+GG ++ET N+I G+VA +VDV P++E+ + +A
Sbjct: 816 FAIRSVVEGGAVVETLDNIILGRVA--AVDVYNPITEELLVKA 856
>sp|Q7TN05|AP1S3_MOUSE AP-1 complex subunit sigma-3 OS=Mus musculus GN=Ap1s3 PE=2 SV=1
Length = 154
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 4/129 (3%)
Query: 7 IKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIV 66
I ILL +GK K+Y+ + ++ + + RT + I E +V
Sbjct: 2 IHFILLFSRQGKLRLQKWYTT--LPDKERKKITRDIIQTVLSRGHRTSSFIDWKELK-LV 58
Query: 67 YKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEI 126
YK L+F +NEL+ ++ + + + GNV + + + N + LDE
Sbjct: 59 YKRYASLYFCCAIENQDNELLTLEIVHRYVELLDKYF-GNVCELDIIFNFEKAYFILDEF 117
Query: 127 VDGGIILET 135
+ GG I ET
Sbjct: 118 IIGGEIQET 126
>sp|Q4ICG5|AP2S_GIBZE AP-2 complex subunit sigma OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=APS2 PE=3 SV=1
Length = 143
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 5/136 (3%)
Query: 10 ILLLDSEGKRVAVKYYSNDWP-TNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYK 68
IL+ + +GK K+Y+ P ++ K + V + + ++ N IVY+
Sbjct: 5 ILIQNRQGKTRLAKWYA---PFSDEQKIKLKGEVHRLVAPRDQKYQSNFVEFRNNKIVYR 61
Query: 69 FVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVD 128
L F ++NEL + F + + GNV + + + N + LDE+
Sbjct: 62 RYAGLFFCACVDTNDNELAFLEAIHFFVEVLDAFF-GNVCELDLVFNFYKVYAILDEVFL 120
Query: 129 GGIILETDANVIAGKV 144
G I ET V+ ++
Sbjct: 121 AGEIEETSKQVVLTRL 136
>sp|C6A317|SYG_THESM Glycine--tRNA ligase OS=Thermococcus sibiricus (strain MM 739 / DSM
12597) GN=glyS PE=3 SV=1
Length = 570
Score = 32.0 bits (71), Expect = 2.3, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 113 LENLDLILLCLDEIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLT 172
L+NL +I L LDE V G ++ T V +D+G P ++ Q L R H +
Sbjct: 248 LKNLGMIELTLDEAVKKGYVMNTFFAYYMAMVKRILLDIGIPANKIRFRQQLPEERAHYS 307
>sp|P35585|AP1M1_MOUSE AP-1 complex subunit mu-1 OS=Mus musculus GN=Ap1m1 PE=1 SV=3
Length = 423
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 114 ENLDLILLCLDEIVDGGIILETDANVIAGKVAS--HSVDVGAPLSEQTISQALATARE 169
+N +I LDE++D G TD+ ++ + H ++ GAP T++ A++ E
Sbjct: 105 DNFVIIYELLDELMDFGYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSE 162
>sp|Q32Q06|AP1M1_RAT AP-1 complex subunit mu-1 OS=Rattus norvegicus GN=Ap1m1 PE=1 SV=3
Length = 423
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 114 ENLDLILLCLDEIVDGGIILETDANVIAGKVAS--HSVDVGAPLSEQTISQALATARE 169
+N +I LDE++D G TD+ ++ + H ++ GAP T++ A++ E
Sbjct: 105 DNFVIIYELLDELMDFGYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSE 162
>sp|Q9BXS5|AP1M1_HUMAN AP-1 complex subunit mu-1 OS=Homo sapiens GN=AP1M1 PE=1 SV=3
Length = 423
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 114 ENLDLILLCLDEIVDGGIILETDANVIAGKVAS--HSVDVGAPLSEQTISQALATARE 169
+N +I LDE++D G TD+ ++ + H ++ GAP T++ A++ E
Sbjct: 105 DNFVIIYELLDELMDFGYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSE 162
>sp|Q2KJ81|AP1M1_BOVIN AP-1 complex subunit mu-1 OS=Bos taurus GN=AP1M1 PE=1 SV=3
Length = 423
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 114 ENLDLILLCLDEIVDGGIILETDANVIAGKVAS--HSVDVGAPLSEQTISQALATARE 169
+N +I LDE++D G TD+ ++ + H ++ GAP T++ A++ E
Sbjct: 105 DNFVIIYELLDELMDFGYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSE 162
>sp|Q5HC04|RPOC_EHRRW DNA-directed RNA polymerase subunit beta' OS=Ehrlichia ruminantium
(strain Welgevonden) GN=rpoC PE=3 SV=1
Length = 1411
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 121 LCLDEIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQA 163
+ ++DGG ++ET N+I G+VA +VD+ P++++ + A
Sbjct: 815 FAMRSVIDGGTVVETLDNIILGRVA--AVDIYNPITKELLVNA 855
>sp|Q8CJ19|MICA3_MOUSE Protein-methionine sulfoxide oxidase MICAL3 OS=Mus musculus
GN=Mical3 PE=1 SV=2
Length = 1993
Score = 31.6 bits (70), Expect = 3.1, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 63 NVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALEN 115
N++ YK D H+FV + ++ L +L + D LL R NVD +EAL N
Sbjct: 288 NIVYYK--DDTHYFVMTAKKQSLLDKGVILHDYTDTELLLSRENVD-QEALLN 337
>sp|E7F9T0|MICA1_DANRE Protein-methionine sulfoxide oxidase mical1 OS=Danio rerio
GN=mical1 PE=3 SV=1
Length = 1214
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 54 EAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAL 113
++EI + N++ YK D H+FV + + L + Q F DA LL NV+ +EAL
Sbjct: 273 QSEIGVDLENIVYYK--DDTHYFVMTAKKASLLKKGVIKQDFSDADKLLAPSNVN-QEAL 329
Query: 114 EN 115
++
Sbjct: 330 QD 331
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,291,386
Number of Sequences: 539616
Number of extensions: 2305298
Number of successful extensions: 7027
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 6968
Number of HSP's gapped (non-prelim): 73
length of query: 177
length of database: 191,569,459
effective HSP length: 110
effective length of query: 67
effective length of database: 132,211,699
effective search space: 8858183833
effective search space used: 8858183833
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)