Query 030448
Match_columns 177
No_of_seqs 107 out of 841
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 22:36:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030448.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030448hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tjz_C Coatomer subunit zeta-1 100.0 2.1E-42 7.3E-47 263.3 18.4 145 2-150 8-152 (153)
2 1w63_Q Adapter-related protein 100.0 2.2E-38 7.7E-43 242.3 17.7 140 6-149 1-140 (158)
3 2vgl_S AP-2 complex subunit si 100.0 2.8E-36 9.7E-41 226.7 19.5 136 6-145 1-136 (142)
4 2vgl_M AP-2 complex subunit MU 100.0 2.1E-30 7.2E-35 225.8 19.0 139 6-150 1-139 (435)
5 1w63_M Adaptor-related protein 100.0 1E-30 3.4E-35 227.1 13.4 141 5-150 1-141 (423)
6 3cpt_A Mitogen-activated prote 96.6 0.062 2.1E-06 39.5 12.0 97 5-102 36-136 (143)
7 2nut_C Vesicle-trafficking pro 96.0 0.18 6.1E-06 38.6 12.7 98 6-105 2-102 (196)
8 4b93_A Vesicle-associated memb 95.8 0.092 3.1E-06 40.2 10.0 83 16-105 11-93 (189)
9 2vx8_A Nucleoporin-like protei 95.1 0.2 6.8E-06 37.8 9.8 83 16-105 53-135 (169)
10 3bw6_A Synaptobrevin homolog Y 95.0 0.7 2.4E-05 33.6 12.1 99 7-105 7-111 (144)
11 3kyq_A YKT6, synaptobrevin hom 94.5 1 3.6E-05 34.6 12.7 99 6-104 3-107 (199)
12 4afi_A AP-3 complex subunit de 94.3 0.48 1.6E-05 35.8 10.2 83 16-105 63-145 (173)
13 2j3t_C Trafficking protein par 93.6 0.66 2.2E-05 33.9 9.4 96 5-102 1-108 (145)
14 2j3w_A Sedlin, trafficking pro 89.2 4.8 0.00016 29.0 10.8 98 7-105 6-114 (142)
15 3cue_C Transport protein parti 88.5 2.8 9.7E-05 31.0 8.4 100 5-106 1-119 (159)
16 3cue_A Transport protein parti 73.6 30 0.001 26.9 13.0 24 5-28 1-24 (219)
17 2fh5_A Signal recognition part 67.2 36 0.0012 25.8 8.4 96 5-106 9-106 (185)
18 1nrj_A Signal recognition part 58.2 51 0.0018 24.0 10.7 76 6-81 1-93 (158)
19 2j3t_D Trafficking protein par 23.2 2.6E+02 0.0088 21.5 8.3 92 11-105 85-184 (219)
20 2j3t_D Trafficking protein par 20.1 82 0.0028 24.4 3.3 21 7-27 3-23 (219)
No 1
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=100.00 E-value=2.1e-42 Score=263.26 Aligned_cols=145 Identities=45% Similarity=0.770 Sum_probs=129.5
Q ss_pred CCccceeeEEEEcCCCCEeEEecCCCCCCChhHHHHHHHHHHHHhhhcCCcccCceEEecCeEEEEEEeCcEEEEEEecC
Q 030448 2 DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGE 81 (177)
Q Consensus 2 ~~~~mI~~i~iln~~G~~il~k~Y~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~ 81 (177)
.|++||+|++|+|++|+++++|||++++++.++|+++++.+++++.+ . ++|++.+++++++||++++|||+++++.
T Consensus 8 ~sl~mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~r-~---~~~i~~~~~~~~vy~~~~~Lyfv~~~~~ 83 (153)
T 3tjz_C 8 PSLYTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHR-T---DSEIALLEGLTVVYKSSIDLYFYVIGSS 83 (153)
T ss_dssp CCSBCEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHSS-C---CCCEEEETTEEEEEEECSSCEEEEEEET
T ss_pred ccHHHheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C---CCCEEEECCEEEEEEEECCEEEEEEEcC
Confidence 47889999999999999999999998766678899999999999743 2 3799999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHHHHHhhccCCCCHHHHHHhHHHHHHHHHHHhhCcEEeecCHHHHHHhhcCCCcC
Q 030448 82 DENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGIILETDANVIAGKVASHSVD 150 (177)
Q Consensus 82 ~eNel~l~e~L~~i~~~l~~~~~~~~~~~~i~~nf~~v~~lLDE~id~G~i~eTd~~~i~~~i~~~~~~ 150 (177)
++||++++++||+++++|++||++.+++.+|++||+++|++||||+|+|+|+|||++.|++++.+++.+
T Consensus 84 ~eNel~ile~L~~~ve~l~~yf~~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~I~~~v~~~~~~ 152 (153)
T 3tjz_C 84 YENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGED 152 (153)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHTC------
T ss_pred CCChHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHcCCEeeeCCHHHHHHHHhcccCC
Confidence 999999999999999999999955577778999999999999999999999999999999999987654
No 2
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=2.2e-38 Score=242.27 Aligned_cols=140 Identities=16% Similarity=0.288 Sum_probs=130.3
Q ss_pred ceeeEEEEcCCCCEeEEecCCCCCCChhHHHHHHHHHHHHhhhcCCcccCceEEecCeEEEEEEeCcEEEEEEecCCccH
Q 030448 6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENE 85 (177)
Q Consensus 6 mI~~i~iln~~G~~il~k~Y~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNe 85 (177)
||++++|+|++|+++++|||++. +.++|.++++.+++++..+++. .+|++.+++++++|+++++|||+++++.++||
T Consensus 1 MI~~i~Il~~~Gk~~lsk~y~~~--~~~~~~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Ne 77 (158)
T 1w63_Q 1 MMRFMLLFSRQGKLRLQKWYLAT--SDKERKKMVRELMQVVLARKPK-MCSFLEWRDLKVVYKRYASLYFCCAIEGQDNE 77 (158)
T ss_dssp CEEEEEEECSSSCEEEEEESSCC--CHHHHHHHHHHHHHHHHTSCSS-SCSEEEETTEEEEEEEETTEEEEEEECSSSCH
T ss_pred CeEEEEEECCCCCEEEEEeCCCC--CHHHHHHHHHHHHHHHhccCCC-CCCeEEECCEEEEEEEECCEEEEEEecCCCCH
Confidence 89999999999999999999986 5778889999999988776543 48999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCHHHHHHhHHHHHHHHHHHhhCcEEeecCHHHHHHhhcCCCc
Q 030448 86 LILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGIILETDANVIAGKVASHSV 149 (177)
Q Consensus 86 l~l~e~L~~i~~~l~~~~~~~~~~~~i~~nf~~v~~lLDE~id~G~i~eTd~~~i~~~i~~~~~ 149 (177)
++++++||+++++|++|||+ +++.+|++||+++|++||||+|+|+|++||++.|+++|.+++.
T Consensus 78 l~~le~L~~~vevl~~yf~~-v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~l~~~I~~~~~ 140 (158)
T 1w63_Q 78 LITLELIHRYVELLDKYFGS-VCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADL 140 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHHHTTEETTEESCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcc-CCHHHHHHhHHHHHHHHHHHHhCCEEEecCHHHHHHHHhcchh
Confidence 99999999999999999997 5666799999999999999999999999999999999988764
No 3
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=100.00 E-value=2.8e-36 Score=226.72 Aligned_cols=136 Identities=18% Similarity=0.285 Sum_probs=123.3
Q ss_pred ceeeEEEEcCCCCEeEEecCCCCCCChhHHHHHHHHHHHHhhhcCCcccCceEEecCeEEEEEEeCcEEEEEEecCCccH
Q 030448 6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENE 85 (177)
Q Consensus 6 mI~~i~iln~~G~~il~k~Y~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNe 85 (177)
||+|++|+|++|+++++|||++. +.+.++++++.+++++..++++ .+|++.+++++++|+++++|||+++++.++||
T Consensus 1 MI~~i~i~~~~Gk~~l~k~y~~~--~~~~~~~~~~~f~~~v~~~~~~-~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~ 77 (142)
T 2vgl_S 1 MIRFILIQNRAGKTRLAKWYMQF--DDDEKQKLIEEVHAVVTVRDAK-HTNFVEFRNFKIIYRRYAGLYFCICVDVNDNN 77 (142)
T ss_dssp CEEEEEEEETTSCEEEEEECSCC--CHHHHHHHHHHHHHHHHTCCTT-SCSEEEETTEEEEEEEETTEEEEEEECTTSCH
T ss_pred CeEEEEEEcCCCCEEEEEeCCCC--ChhhhHHHHHHHHHHHhcCCCC-CCCEEEECCEEEEEEEECCEEEEEEeCCCCCH
Confidence 89999999999999999999974 5778999999999998865433 58999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCHHHHHHhHHHHHHHHHHHhhCcEEeecCHHHHHHhhc
Q 030448 86 LILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGIILETDANVIAGKVA 145 (177)
Q Consensus 86 l~l~e~L~~i~~~l~~~~~~~~~~~~i~~nf~~v~~lLDE~id~G~i~eTd~~~i~~~i~ 145 (177)
++++++||+++++|++|||+ +++.+|++||+++|++||||+|+|+|++|++..+.+++.
T Consensus 78 l~~le~L~~~ve~l~~yf~~-v~E~~I~~Nf~~vy~lLDE~id~G~~~et~~~~il~~~~ 136 (142)
T 2vgl_S 78 LAYLEAIHNFVEVLNEYFHN-VCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLL 136 (142)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-CCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHHHH
Confidence 99999999999999999987 666679999999999999999999999997666666553
No 4
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=99.97 E-value=2.1e-30 Score=225.76 Aligned_cols=139 Identities=13% Similarity=0.224 Sum_probs=120.9
Q ss_pred ceeeEEEEcCCCCEeEEecCCCCCCChhHHHHHHHHHHHHhhhcCCcccCceEEecCeEEEEEEeCcEEEEEEecCCccH
Q 030448 6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENE 85 (177)
Q Consensus 6 mI~~i~iln~~G~~il~k~Y~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNe 85 (177)
||++++|+|++|+++++|||+++.+ ....+. +.+.+........+|++.++++.++|+++++|||+++++.++||
T Consensus 1 MI~~i~I~~~~Gk~~l~k~y~~~~~-~~~~~~----f~~~v~~~~~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~ 75 (435)
T 2vgl_M 1 MIGGLFIYNHKGEVLISRVYRDDIG-RNAVDA----FRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNA 75 (435)
T ss_dssp CCCEEEEECTTCCEEEEEECSSSCC-HHHHHH----HHHHTTTCSSCCCCSEEEETTEEEEEEEETTEEEEEEESSCCCH
T ss_pred CeEEEEEECCCCCEEEEEecCCCCC-hhHHHH----HHHHHhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCH
Confidence 8999999999999999999998633 333333 33444333222358999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCHHHHHHhHHHHHHHHHHHhhCcEEeecCHHHHHHhhcCCCcC
Q 030448 86 LILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGIILETDANVIAGKVASHSVD 150 (177)
Q Consensus 86 l~l~e~L~~i~~~l~~~~~~~~~~~~i~~nf~~v~~lLDE~id~G~i~eTd~~~i~~~i~~~~~~ 150 (177)
++++|+||+++++|++||++ +++.+|++||+++|++||||+|+|+|++||++.|++++.+++.+
T Consensus 76 l~~le~L~~~v~vl~~yf~~-v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~ 139 (435)
T 2vgl_M 76 AMVFEFLYKMCDVMAAYFGK-ISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIK 139 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHSS-CCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhc-cCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhcccccc
Confidence 99999999999999999997 66667999999999999999999999999999999999998865
No 5
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.97 E-value=1e-30 Score=227.08 Aligned_cols=141 Identities=18% Similarity=0.234 Sum_probs=123.2
Q ss_pred cceeeEEEEcCCCCEeEEecCCCCCCChhHHHHHHHHHHHHhhhcCCcccCceEEecCeEEEEEEeCcEEEEEEecCCcc
Q 030448 5 PSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDEN 84 (177)
Q Consensus 5 ~mI~~i~iln~~G~~il~k~Y~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eN 84 (177)
+||+|++|+|++|+++++|||+++.+ ....+.|++.+..+. +....+|++.++++.++|+++++|||+++++.++|
T Consensus 1 mMI~~i~I~~~~Gk~~l~k~y~~~~~-~~~~~~f~~~v~~~~---~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n 76 (423)
T 1w63_M 1 MSASAVYVLDLKGKVLICRNYRGDVD-MSEVEHFMPILMEKE---EEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNAC 76 (423)
T ss_dssp -CCCEEEEEETTTEECSCBCCSCSCT-TTTHHHHHHHHHHHH---HTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCC
T ss_pred CceEEEEEECCCCCEEEEEecCCCCC-hHHHHHHHHHHhhcc---ccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCC
Confidence 38999999999999999999998643 344556666655432 11224899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCHHHHHHhHHHHHHHHHHHhhCcEEeecCHHHHHHhhcCCCcC
Q 030448 85 ELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGIILETDANVIAGKVASHSVD 150 (177)
Q Consensus 85 el~l~e~L~~i~~~l~~~~~~~~~~~~i~~nf~~v~~lLDE~id~G~i~eTd~~~i~~~i~~~~~~ 150 (177)
|++++|+||+++++|++||++ +++++|++||+++|++||||+|+|+|++||++.|+++|.+++.+
T Consensus 77 ~l~~le~L~~~v~~l~~yf~~-v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~ 141 (423)
T 1w63_M 77 VSLVFSFLYKVVQVFSEYFKE-LEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEFITQEGHK 141 (423)
T ss_dssp THHHHHHHHHHHHHHHHHSSC-CSHHHHHHHHHHHHHHHHHHCSSSSCCCCCSTTTTTTCCSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhh-cCHHHHHHhHHHHHHHHHHHhcCCEEeecCHHHHHHhhcCCCcc
Confidence 999999999999999999976 66667999999999999999999999999999999999998865
No 6
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=96.57 E-value=0.062 Score=39.53 Aligned_cols=97 Identities=14% Similarity=0.142 Sum_probs=69.1
Q ss_pred cceeeEEEEcCCCCEeEEecCCCCCCChhHHHHHHHHHHHHh---hhcC-CcccCceEEecCeEEEEEEeCcEEEEEEec
Q 030448 5 PSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKT---QKTN-ARTEAEIAMLEGNVIVYKFVQDLHFFVTGG 80 (177)
Q Consensus 5 ~mI~~i~iln~~G~~il~k~Y~~~~~~~~~~~~~e~~i~~~~---~~~~-~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~ 80 (177)
.-+.+|+|.|++|-+++.-..... +...-+..|...+-..+ .|.+ +++..=|..++++.+|.....-+++.++++
T Consensus 36 ~Gl~aI~ItDrDGVpi~kv~~~~~-~e~~~r~s~lsTf~~A~dQ~sKLglGknksII~~Y~~yqvVq~n~~Plvit~Ias 114 (143)
T 3cpt_A 36 EGLHAIVVSDRDGVPVIKVANDNA-PEHALRPGFLSTFALATDQGSKLGLSKNKSIICYYNTYQVVQFNRLPLVVSFIAS 114 (143)
T ss_dssp TTEEEEEEECTTSCEEEEEECTTS-CGGGGSHHHHHHHHHHHHHHHHHTCCCEEEEEEECSSEEEEEEEETTEEEEEEEE
T ss_pred CCeEEEEEECCCCcEEEEecCCCC-chhhcccchhhhHHHHHHHHhhcCCCCCceEEEEecCeEEEEEecCCEEEEEEec
Confidence 357899999999999999888653 33344455655533222 1122 333234567899999999999999999999
Q ss_pred CCccHHHHHHHHHHHHHHHHhh
Q 030448 81 EDENELILATVLQGFFDAVGLL 102 (177)
Q Consensus 81 ~~eNel~l~e~L~~i~~~l~~~ 102 (177)
++.|--+++.+=+.+...++..
T Consensus 115 ~~aNtG~Il~Le~~L~p~l~~L 136 (143)
T 3cpt_A 115 SSANTGLIVSLEKELAPLFEEL 136 (143)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchhHhhhHHHHHHHHHHH
Confidence 9999988887766666655554
No 7
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=96.02 E-value=0.18 Score=38.61 Aligned_cols=98 Identities=8% Similarity=-0.002 Sum_probs=65.2
Q ss_pred ceeeEEEEcCCCCEeEEecCCCCCC---ChhHHHHHHHHHHHHhhhcCCcccCceEEecCeEEEEEEeCcEEEEEEecCC
Q 030448 6 SIKNILLLDSEGKRVAVKYYSNDWP---TNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGED 82 (177)
Q Consensus 6 mI~~i~iln~~G~~il~k~Y~~~~~---~~~~~~~~e~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~ 82 (177)
||...+|.-....++|+.++...-. ....-+.+.+.+.+++....+ .--.+..+++.+.|...+++.++++++.+
T Consensus 2 Mi~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~--~r~s~~~~~y~fhy~~~~gl~~l~i~d~~ 79 (196)
T 2nut_C 2 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSP--TRCTLEAGAMTFHYIIEQGVCYLVLCEAA 79 (196)
T ss_dssp CCCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSC--SEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred ceEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCC--CeEEEEeCCEEEEEEeCCCeEEEEEEcCC
Confidence 5666666554335666667653200 112234445555555543111 11346689999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHhhccC
Q 030448 83 ENELILATVLQGFFDAVGLLLRG 105 (177)
Q Consensus 83 eNel~l~e~L~~i~~~l~~~~~~ 105 (177)
...-..+.||+.+.+-+..-++.
T Consensus 80 yp~r~af~fL~~i~~~F~~~~~~ 102 (196)
T 2nut_C 80 FPKKLAFAYLEDLHSEFDEQHGK 102 (196)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHhccc
Confidence 99999999999998887765554
No 8
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=95.76 E-value=0.092 Score=40.18 Aligned_cols=83 Identities=8% Similarity=0.021 Sum_probs=59.4
Q ss_pred CCCEeEEecCCCCCCChhHHHHHHHHHHHHhhhcCCcccCceEEecCeEEEEEEeCcEEEEEEecCCccHHHHHHHHHHH
Q 030448 16 EGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGF 95 (177)
Q Consensus 16 ~G~~il~k~Y~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNel~l~e~L~~i 95 (177)
+|.++|+.|=.. ...-..+...+..++...+. --.+.++++.+-|...+++.++++++.+...-..+.||+.+
T Consensus 11 rg~~iLae~t~~----~gnf~~ia~~iL~kip~~~~---k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL~~i 83 (189)
T 4b93_A 11 RGTTILAKHAWC----GGNFLEVTEQILAKIPSENN---KLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEV 83 (189)
T ss_dssp ETTEEEEEEESS----EECHHHHHHHHHTTCCSSSE---EEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHH
T ss_pred eCCEEEEeCCCC----CCCHHHHHHHHHHhCCCCCC---eEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHHHHH
Confidence 699999997332 12222344444443321111 13467899999999999999999999999999999999999
Q ss_pred HHHHHhhccC
Q 030448 96 FDAVGLLLRG 105 (177)
Q Consensus 96 ~~~l~~~~~~ 105 (177)
.+-+..-++.
T Consensus 84 ~~eF~~~~~~ 93 (189)
T 4b93_A 84 KKRFQTTYGS 93 (189)
T ss_dssp HHHHHHHHGG
T ss_pred HHHHHhhccc
Confidence 9888766654
No 9
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=95.14 E-value=0.2 Score=37.76 Aligned_cols=83 Identities=8% Similarity=0.019 Sum_probs=61.3
Q ss_pred CCCEeEEecCCCCCCChhHHHHHHHHHHHHhhhcCCcccCceEEecCeEEEEEEeCcEEEEEEecCCccHHHHHHHHHHH
Q 030448 16 EGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGF 95 (177)
Q Consensus 16 ~G~~il~k~Y~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNel~l~e~L~~i 95 (177)
+|.++|+.|-... ......-+.+.+++...+. --.+..+++.+-|...+++.++++++.+..--..+.||+.+
T Consensus 53 RG~~VLae~t~~~----gnf~~iak~ll~kl~~~~~---r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fLedI 125 (169)
T 2vx8_A 53 RGTTILAKHAWCG----GNFLEVTEQILAKIPSENN---KLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEV 125 (169)
T ss_dssp ETTEEEEEEESSC----BSHHHHHHHHHTTSCSSCE---EEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHH
T ss_pred cCCEEEEEeccCC----CCHHHHHHHHHhhCCCCCC---ceEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHHHHH
Confidence 5778888874321 1233444555555443221 13467899999999999999999999999999999999999
Q ss_pred HHHHHhhccC
Q 030448 96 FDAVGLLLRG 105 (177)
Q Consensus 96 ~~~l~~~~~~ 105 (177)
.+-+..-+++
T Consensus 126 ~~eF~~~y~~ 135 (169)
T 2vx8_A 126 KKRFQTTYGS 135 (169)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhhh
Confidence 9988777665
No 10
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=94.96 E-value=0.7 Score=33.61 Aligned_cols=99 Identities=9% Similarity=-0.067 Sum_probs=65.3
Q ss_pred eeeEEEEcCCC--CEeEEecCCCC---CCChhHHHHHHHHHHHHhhhcCCcccCceEEecCeEEEEE-EeCcEEEEEEec
Q 030448 7 IKNILLLDSEG--KRVAVKYYSND---WPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYK-FVQDLHFFVTGG 80 (177)
Q Consensus 7 I~~i~iln~~G--~~il~k~Y~~~---~~~~~~~~~~e~~i~~~~~~~~~~~~~~i~~~~~~~ivy~-~~~dl~~~~v~~ 80 (177)
|-++.|+-..+ -++|+..++-. +......++|...+.+.+..+-....---+..+++.+-|. +.+++..+++++
T Consensus 7 l~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~~~R~sv~~~~y~fH~~~~~~gl~~l~i~D 86 (144)
T 3bw6_A 7 IYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGQRQSIEEGNYIGHVYARSEGICGVLITD 86 (144)
T ss_dssp EEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCTTEEEEEEETTEEEEEEECTTSEEEEEEEE
T ss_pred EEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCCCceEEEEeCCEEEEEEEecCCEEEEEEEC
Confidence 44554444332 56788877532 1112233556556666655543211123466799999888 789999999999
Q ss_pred CCccHHHHHHHHHHHHHHHHhhccC
Q 030448 81 EDENELILATVLQGFFDAVGLLLRG 105 (177)
Q Consensus 81 ~~eNel~l~e~L~~i~~~l~~~~~~ 105 (177)
.+...-..+.+|+.+.+-+..-++.
T Consensus 87 ~~yp~rvAF~~L~~i~~eF~~~y~~ 111 (144)
T 3bw6_A 87 KEYPVRPAYTLLNKILDEYLVAHPK 111 (144)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHSCG
T ss_pred CCCChhHHHHHHHHHHHHHHHHccc
Confidence 9999999999999988877665554
No 11
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=94.54 E-value=1 Score=34.59 Aligned_cols=99 Identities=10% Similarity=0.053 Sum_probs=67.9
Q ss_pred ceeeEEEEcCCCC--EeEEecCCCC---CCChhHHHHHHHHHHHHhhhcCCcccCceEEecCeEEE-EEEeCcEEEEEEe
Q 030448 6 SIKNILLLDSEGK--RVAVKYYSND---WPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIV-YKFVQDLHFFVTG 79 (177)
Q Consensus 6 mI~~i~iln~~G~--~il~k~Y~~~---~~~~~~~~~~e~~i~~~~~~~~~~~~~~i~~~~~~~iv-y~~~~dl~~~~v~ 79 (177)
-|-++.++...|. .+++..|+-. +.....-.+|....-+.+.++.....--.+..+++.+- |.+.+++.+++++
T Consensus 3 k~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~~~r~s~~~~~y~fH~y~~~~gl~yl~it 82 (199)
T 3kyq_A 3 KLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKGSRASVKEQEYLCHVYVRSDSLAGVVIA 82 (199)
T ss_dssp CEEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCTTEEEEEECSSEEEEEEECTTSEEEEEEE
T ss_pred eEEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCCCCeEEEEeCCEEEEEEEecCCEEEEEEE
Confidence 3557777765544 3567766521 12234455665555555555532211234668899888 8999999999999
Q ss_pred cCCccHHHHHHHHHHHHHHHHhhcc
Q 030448 80 GEDENELILATVLQGFFDAVGLLLR 104 (177)
Q Consensus 80 ~~~eNel~l~e~L~~i~~~l~~~~~ 104 (177)
+.+...-..+.+|+.+.+-+..-++
T Consensus 83 d~~yp~r~AF~fL~ei~~eF~~~~~ 107 (199)
T 3kyq_A 83 DSEYPSRVAFTLLEKVLDEFSKQVD 107 (199)
T ss_dssp ETTSCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999988877665
No 12
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=94.35 E-value=0.48 Score=35.78 Aligned_cols=83 Identities=8% Similarity=0.019 Sum_probs=58.8
Q ss_pred CCCEeEEecCCCCCCChhHHHHHHHHHHHHhhhcCCcccCceEEecCeEEEEEEeCcEEEEEEecCCccHHHHHHHHHHH
Q 030448 16 EGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGF 95 (177)
Q Consensus 16 ~G~~il~k~Y~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNel~l~e~L~~i 95 (177)
+|.++|+.|=... .+ -..+-+.+.+++...+ .--.+..+++.+-|...+++.++++++.+..--..+.||+.+
T Consensus 63 rg~tiLAE~t~~~-gn---f~~va~~iL~kip~~~---~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FLedI 135 (173)
T 4afi_A 63 RGTTILAKHAWCG-GN---FLEVTEQILAKIPSEN---NKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEV 135 (173)
T ss_dssp ETTEEEEEEESSC-CC---HHHHHHHHHTTSCSSS---EEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHH
T ss_pred CCCEEEEEccCCC-CC---HHHHHHHHHHhCCCCC---CeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHHHHH
Confidence 5889999885432 11 1233333333322211 113467899999999999999999999999999999999999
Q ss_pred HHHHHhhccC
Q 030448 96 FDAVGLLLRG 105 (177)
Q Consensus 96 ~~~l~~~~~~ 105 (177)
.+-+..-+++
T Consensus 136 ~~eF~~~yg~ 145 (173)
T 4afi_A 136 KKRFQTTYGS 145 (173)
T ss_dssp HHHHHHHHGG
T ss_pred HHHHHHHhch
Confidence 9888776664
No 13
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=93.56 E-value=0.66 Score=33.88 Aligned_cols=96 Identities=9% Similarity=0.096 Sum_probs=58.8
Q ss_pred cceeeEEEEcCCCCEeEEecCCCCC---CC-hhHHHHHHHHHHHH---hhhcCCc-ccC--ceEEecCe-EEEEEEeCcE
Q 030448 5 PSIKNILLLDSEGKRVAVKYYSNDW---PT-NSAKEAFEKAVFTK---TQKTNAR-TEA--EIAMLEGN-VIVYKFVQDL 73 (177)
Q Consensus 5 ~mI~~i~iln~~G~~il~k~Y~~~~---~~-~~~~~~~e~~i~~~---~~~~~~~-~~~--~i~~~~~~-~ivy~~~~dl 73 (177)
++|.++.|+|++|..|+.|-|.+.- .+ .++.+....-++.. +.+.... ... ..+..+++ .-.|..-.++
T Consensus 1 M~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~Tgi 80 (145)
T 2j3t_C 1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGI 80 (145)
T ss_dssp -CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSC
T ss_pred CeEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCC
Confidence 3688999999999999999996421 11 22333332222221 1111111 111 33456676 4455566789
Q ss_pred EEEEEecCCccHHHHHHHHHHHH-HHHHhh
Q 030448 74 HFFVTGGEDENELILATVLQGFF-DAVGLL 102 (177)
Q Consensus 74 ~~~~v~~~~eNel~l~e~L~~i~-~~l~~~ 102 (177)
-|+++++..+++ +-++|+.++ +...+|
T Consensus 81 KFvl~td~~~~~--i~~~l~~iy~~lYv~~ 108 (145)
T 2j3t_C 81 KVVMNTDLGVGP--IRDVLHHIYSALYVEF 108 (145)
T ss_dssp EEEEEECTTCCC--CHHHHHHHHHTTHHHH
T ss_pred EEEEEecCCcch--HHHHHHHHHHHHHHHH
Confidence 999999987665 668888888 677774
No 14
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=89.22 E-value=4.8 Score=28.98 Aligned_cols=98 Identities=5% Similarity=-0.001 Sum_probs=57.2
Q ss_pred eeeEEEEcCCCCEeEEecCCCCCCC-hhHHHHHHH-H-HHHH---hhhcC-CcccCceE---EecCe-EEEEEEeCcEEE
Q 030448 7 IKNILLLDSEGKRVAVKYYSNDWPT-NSAKEAFEK-A-VFTK---TQKTN-ARTEAEIA---MLEGN-VIVYKFVQDLHF 75 (177)
Q Consensus 7 I~~i~iln~~G~~il~k~Y~~~~~~-~~~~~~~e~-~-i~~~---~~~~~-~~~~~~i~---~~~~~-~ivy~~~~dl~~ 75 (177)
|.++.|+|++|++++.+-|.+.-.. .++..+... . ++.. +.+.. ...+.... ..+++ ...|..-.++-|
T Consensus 6 i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~~~~~l~~~~~~~~y~v~~~~T~tg~Kf 85 (142)
T 2j3w_A 6 SFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRF 85 (142)
T ss_dssp CEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTCCEE
T ss_pred EEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCCCcceeEeeecccceEEEEEEcCCCcEE
Confidence 6899999999999999999753110 011111111 1 2211 11111 11111122 23444 345556678889
Q ss_pred EEEecCCccHHHHHHHHHHHHHHHHhhccC
Q 030448 76 FVTGGEDENELILATVLQGFFDAVGLLLRG 105 (177)
Q Consensus 76 ~~v~~~~eNel~l~e~L~~i~~~l~~~~~~ 105 (177)
+++++.. ++-.+-++++.++++..++..+
T Consensus 86 vl~~d~~-~~~~i~~~~~~iy~~Y~~~v~N 114 (142)
T 2j3w_A 86 IMLHDVR-QEDGIKNFFTDVYDLYIKFAMN 114 (142)
T ss_dssp EEEESSC-CHHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEeCCC-CcHHHHHHHHHHHHHHHHHhcC
Confidence 9999863 5667888888888888777655
No 15
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=88.48 E-value=2.8 Score=30.96 Aligned_cols=100 Identities=12% Similarity=0.107 Sum_probs=55.9
Q ss_pred cceeeEEEEcCCCCEeEEecCCCC-------C---CChhHHHHHHHHHHHH---hhhcCCccc-C--ceEEecCeEE-EE
Q 030448 5 PSIKNILLLDSEGKRVAVKYYSND-------W---PTNSAKEAFEKAVFTK---TQKTNARTE-A--EIAMLEGNVI-VY 67 (177)
Q Consensus 5 ~mI~~i~iln~~G~~il~k~Y~~~-------~---~~~~~~~~~e~~i~~~---~~~~~~~~~-~--~i~~~~~~~i-vy 67 (177)
++|.+++|+|++|..|+.|-|.+. . ...++......-++.. +.+...... . ..+..+.+.+ .|
T Consensus 1 M~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~~~~~f~~~~T~~ykl~~~ 80 (159)
T 3cue_C 1 MGIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGSVKNDIRSISTGKYRVHTY 80 (159)
T ss_dssp CCCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSSSCCCEEEEECSSCBEEEE
T ss_pred CeEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEeeCCEEEEEE
Confidence 468899999999999999988531 0 0112222222222221 122111111 1 2233455543 34
Q ss_pred EEeCcEEEEEEecCCccHHHHHHHHHHHHH-HHHhhc-cCC
Q 030448 68 KFVQDLHFFVTGGEDENELILATVLQGFFD-AVGLLL-RGN 106 (177)
Q Consensus 68 ~~~~dl~~~~v~~~~eNel~l~e~L~~i~~-~l~~~~-~~~ 106 (177)
..-.++-|+++++..+++ +-++|+.+++ +..+|. +++
T Consensus 81 eT~TgiKFvl~td~~~~~--i~~~l~~iy~~lYv~yv~kNP 119 (159)
T 3cue_C 81 CTASGLWFVLLSDFKQQS--YTQVLQYIYSHIYVKYVSNNL 119 (159)
T ss_dssp CCSSCCEEEEECCSSSSC--THHHHHHHHHHHHHHHHHSCT
T ss_pred EeCCCCEEEEEeCCCcch--HHHHHHHHHHHHHHHHHHhCC
Confidence 455689999999987654 4477888886 777743 554
No 16
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=73.60 E-value=30 Score=26.93 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=20.8
Q ss_pred cceeeEEEEcCCCCEeEEecCCCC
Q 030448 5 PSIKNILLLDSEGKRVAVKYYSND 28 (177)
Q Consensus 5 ~mI~~i~iln~~G~~il~k~Y~~~ 28 (177)
++|..++|+|+.|..|+.|-|.+.
T Consensus 1 M~i~sl~IiNk~GglIY~r~~~~~ 24 (219)
T 3cue_A 1 MAIETILVINKSGGLIYQRNFTND 24 (219)
T ss_dssp -CEEEEEEECTTSCEEEEEECSSC
T ss_pred CeeEEEEEEeCCCCEEeehhhccC
Confidence 468999999999999999999743
No 17
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=67.19 E-value=36 Score=25.75 Aligned_cols=96 Identities=9% Similarity=0.027 Sum_probs=55.2
Q ss_pred cceeeEEEEcCCCCEeEEecCCCCCCChhHHHHHHHHHHHHhhhcCCcccCceEEecCeEEEEEEeCcE--EEEEEecCC
Q 030448 5 PSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDL--HFFVTGGED 82 (177)
Q Consensus 5 ~mI~~i~iln~~G~~il~k~Y~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl--~~~~v~~~~ 82 (177)
.|+..+.|++.-|=++-+ |.+.... ...-...+++.+.-.. +...+.+.++++.+-|+..+++ .|+++=..=
T Consensus 9 ~~~D~~~IfTkGGvVLWs--~~~~~~~---~~~~IN~LIr~VlLEE-R~~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~i 82 (185)
T 2fh5_A 9 SMVDFFTIFSKGGLVLWC--FQGVSDS---CTGPVNALIRSVLLQE-RGGNNSFTHEALTLKYKLDNQFELVFVVGFQKI 82 (185)
T ss_dssp CSCSEEEEEETTSBEEEE--EBTTTBS---CCCHHHHHHHHTGGGC--------CCCCCEEEEEEETTTTEEEEEEESCG
T ss_pred cceeEEEEEeCCeEEEEe--ecCCccc---ccchHHHHHHHhhhcc-ccCCCceeEcCeEEEEEEeccCCEEEEEEEccc
Confidence 489999999988888877 3222001 0112334444443322 2224668899999999988765 455554443
Q ss_pred ccHHHHHHHHHHHHHHHHhhccCC
Q 030448 83 ENELILATVLQGFFDAVGLLLRGN 106 (177)
Q Consensus 83 eNel~l~e~L~~i~~~l~~~~~~~ 106 (177)
-+-..+-++|+.+...+.+.+++.
T Consensus 83 L~L~YiD~LL~~v~~~Fv~~Y~~~ 106 (185)
T 2fh5_A 83 LTLTYVDKLIDDVHRLFRDKYRTE 106 (185)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHH
Confidence 455556677777777766666543
No 18
>1nrj_A Signal recognition particle receptor alpha subunit homolog; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: d.110.4.4
Probab=58.22 E-value=51 Score=24.04 Aligned_cols=76 Identities=12% Similarity=0.121 Sum_probs=45.9
Q ss_pred ceeeEEEEcCCCCEeEEecCCCCCCChhHHHHHHHHHHHHhhhcCC-----cc---cCceEEe-------cCeEEEEE--
Q 030448 6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNA-----RT---EAEIAML-------EGNVIVYK-- 68 (177)
Q Consensus 6 mI~~i~iln~~G~~il~k~Y~~~~~~~~~~~~~e~~i~~~~~~~~~-----~~---~~~i~~~-------~~~~ivy~-- 68 (177)
|+..+.|...+|++++.----+.-.++..-.+|.+.++..=..++. .. .-+++.+ +++.+.|+
T Consensus 1 M~dQf~IFTp~GqVLy~yn~l~kKf~e~qiN~fIS~LitsP~~~~~~~s~~~~~~~k~~~~~i~~~~k~~~~f~~~~~~s 80 (158)
T 1nrj_A 1 MFDQLAVFTPQGQVLYQYNCLGKKFSEIQINSFISQLITSPVTRKESVANANTDGFDFNLLTINSEHKNSPSFNALFYLN 80 (158)
T ss_dssp CCCEEEEECTTCBEEEEEETTSCCCCHHHHHHHHHHHHHSCCCGGGEECSGGGTTCCEEEEECC--------CEEEEEEE
T ss_pred CcceEEEeccCceEEEEecccCcchHHHHHHHHHHHHhcCCcccccccccccccccceeeEeecccccCCCCeeEEEEec
Confidence 8899999999999998644222112455667777777743111110 01 1256666 88888877
Q ss_pred EeCcEEEEEEecC
Q 030448 69 FVQDLHFFVTGGE 81 (177)
Q Consensus 69 ~~~dl~~~~v~~~ 81 (177)
+...||++++-.+
T Consensus 81 kQP~LyfVvtyae 93 (158)
T 1nrj_A 81 KQPELYFVVTFAE 93 (158)
T ss_dssp ETTEEEEEEEESS
T ss_pred CCCcEEEEEEecc
Confidence 5577887777654
No 19
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=23.15 E-value=2.6e+02 Score=21.51 Aligned_cols=92 Identities=11% Similarity=0.202 Sum_probs=54.7
Q ss_pred EEEcCCCCEeEEecCCCCCCChhHHHHHHHHHHH---HhhhcCCcc---cCceEEecCeEEE-EEEeCcEEEEEEecCCc
Q 030448 11 LLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFT---KTQKTNART---EAEIAMLEGNVIV-YKFVQDLHFFVTGGEDE 83 (177)
Q Consensus 11 ~iln~~G~~il~k~Y~~~~~~~~~~~~~e~~i~~---~~~~~~~~~---~~~i~~~~~~~iv-y~~~~dl~~~~v~~~~e 83 (177)
+|.+++..+++-|.+.+. .+..+...+-.-++. -..+.+... .-..+..+.+.+- |..-.++-|+++++..+
T Consensus 85 ~iigk~N~PLyir~f~~~-l~sn~~L~lag~lhSLd~i~~klsp~~~s~g~~~~~T~~ykl~~y~T~TgiKFVLltd~~~ 163 (219)
T 2j3t_D 85 YLGNPANYPVSIRFGRPR-LTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQ 163 (219)
T ss_dssp HTTCGGGCSEEEEEECCC-CCHHHHHHHHHHHHHHHHHHHHTCSSSSCCSCSEEEESSCEEEEEECTTSCEEEEEECTTC
T ss_pred eeecCCCCceEEEecCCC-CChhHHHHHHHHHHHHHHHHHHhCCCCCCCCeeEEecCceEEEEEEcCCCCEEEEEecCCc
Confidence 345677889999999875 233333333223332 112222111 1145566776554 45566899999999865
Q ss_pred cHHHHHHHHHHHHHHHHhh-ccC
Q 030448 84 NELILATVLQGFFDAVGLL-LRG 105 (177)
Q Consensus 84 Nel~l~e~L~~i~~~l~~~-~~~ 105 (177)
+. +-++|+.+++...+| .++
T Consensus 164 ~~--ir~~l~~IyelYvd~V~kN 184 (219)
T 2j3t_D 164 AG--IDSLLRKIYEIYSDFALKN 184 (219)
T ss_dssp CC--HHHHHHHHHHHHHHHHTTC
T ss_pred hH--HHHHHHHHHHHHHHHhccC
Confidence 44 558888888888887 544
No 20
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=20.13 E-value=82 Score=24.38 Aligned_cols=21 Identities=10% Similarity=0.070 Sum_probs=18.8
Q ss_pred eeeEEEEcCCCCEeEEecCCC
Q 030448 7 IKNILLLDSEGKRVAVKYYSN 27 (177)
Q Consensus 7 I~~i~iln~~G~~il~k~Y~~ 27 (177)
|.+++|+|+.|..|+.+.|..
T Consensus 3 iy~~yi~~~~~~liy~~~~~~ 23 (219)
T 2j3t_D 3 IFSVYVVNKAGGLIYQLDSYA 23 (219)
T ss_dssp EEEEEEECTTSCEEEEEECC-
T ss_pred EEEEEEEecCCceEEecccCC
Confidence 789999999999999998874
Done!