BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030449
(177 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MIL|A Chain A, Crystal Structure Of Isoamyl Acetate-Hydrolyzing Esterase
From Saccharomyces Cerevisiae
pdb|3MIL|B Chain B, Crystal Structure Of Isoamyl Acetate-Hydrolyzing Esterase
From Saccharomyces Cerevisiae
Length = 240
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 69/121 (57%), Gaps = 17/121 (14%)
Query: 4 QIVLFGDSITQQSFGSA---------GWGAALADAYCRKADVLLRGYGGYNTRWALFLLH 54
+ +LFGDSIT+ +F + GAAL + Y RK D+L RG+ GY +RWAL +L
Sbjct: 5 KFLLFGDSITEFAFNTRPIEDGKDQYALGAALVNEYTRKMDILQRGFKGYTSRWALKILP 64
Query: 55 HIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLK--RLSPIM 112
I L + + V TIF GANDA G Q VP+ E+ DN++ MV +K + PI+
Sbjct: 65 EI--LKHESNIVMATIFLGANDACSAG----PQSVPLPEFIDNIRQMVSLMKSYHIRPII 118
Query: 113 L 113
+
Sbjct: 119 I 119
>pdb|1YZF|A Chain A, Crystal Structure Of The LipaseACYLHYDROLASE FROM
ENTEROCOCCUS Faecalis
Length = 195
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 58/134 (43%), Gaps = 22/134 (16%)
Query: 4 QIVLFGDSITQQSFGSAGWGAALADAYCR--------KADVLLRGYGGYNTRWALFLLHH 55
+IVLFGDSIT A L D R + V+ G G T L L+
Sbjct: 3 KIVLFGDSITAGYLDEA-VSPVLVDLVKRDIAAMGLEEVAVINAGMPGDTTEDGLKRLNK 61
Query: 56 IFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVV 115
++ P IFFGANDA+L +++ V + +NL+ M+ + V+
Sbjct: 62 EVLIEK---PDEVVIFFGANDASL------DRNITVATFRENLETMIHEIGSEK----VI 108
Query: 116 LITPPPVDEDGRME 129
LITPP D R E
Sbjct: 109 LITPPYADSGRRPE 122
>pdb|2HSJ|A Chain A, The Structure Of A Putative Platelet Activating Factor
From Streptococcus Pneumonia.
pdb|2HSJ|B Chain B, The Structure Of A Putative Platelet Activating Factor
From Streptococcus Pneumonia.
pdb|2HSJ|C Chain C, The Structure Of A Putative Platelet Activating Factor
From Streptococcus Pneumonia.
pdb|2HSJ|D Chain D, The Structure Of A Putative Platelet Activating Factor
From Streptococcus Pneumonia
Length = 214
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 33/147 (22%)
Query: 1 MRPQIVLFGDSIT-----QQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHH 55
+ P I+ GDSI Q+ FG++ ++ RG GY T L
Sbjct: 33 VEPNILFIGDSIVEYYPLQELFGTS-------------KTIVNRGIRGYQTGLLL----- 74
Query: 56 IFPLDNSNPPVATTIFFGANDAA--LFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIML 113
+ ++ GA D L G + VPV E +NL+ ++Q + R P+
Sbjct: 75 --------ENLDAHLYGGAVDKIFLLIGTNDIGKDVPVNEALNNLEAIIQSVARDYPLTE 126
Query: 114 VVLITPPPVDEDGRMEYAKYVNSSPYI 140
+ L++ PV+E + A Y+ S+ I
Sbjct: 127 IKLLSILPVNEREEYQQAVYIRSNEKI 153
>pdb|3C0K|A Chain A, Crystal Structure Of A Ribosomal Rna Methyltranferase
pdb|3C0K|B Chain B, Crystal Structure Of A Ribosomal Rna Methyltranferase
Length = 396
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 11/56 (19%)
Query: 89 VPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDE-DGRMEYAKYVNSSPYINCF 143
+P+EE+G L + +QH + T +D+ D R+ +YV + +NCF
Sbjct: 183 LPIEEHGXKLLVDIQHGHK----------TGYYLDQRDSRLATRRYVENKRVLNCF 228
>pdb|3IZ6|D Chain D, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 265
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 123 DEDGRMEYAKYVNSS------PYINCFLGRPPKYPQPIGK 156
DED + + K + PY+N + GR +YP PI K
Sbjct: 116 DEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIK 155
>pdb|3DT6|A Chain A, Crystal Structure Of Bovin Brain Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Paraoxon
pdb|3DT9|A Chain A, Crystal Structure Of Bovin Brain Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Soman
Length = 232
Score = 26.2 bits (56), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 24/133 (18%)
Query: 2 RPQIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDN 61
P++V GDS+ Q S W + + L G GG +T+ L+ L + L++
Sbjct: 38 EPEVVFIGDSLVQLMHQSEIWRELFSPLHA-----LNFGIGGDSTQHVLWRLEN-GELEH 91
Query: 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLI---- 117
P + ++ G N+ G T+ E+ +K +VQ + P VV++
Sbjct: 92 IRPKI-VVVWVGTNN---HGHTA-------EQVTGGIKAIVQLVNERQPQARVVVLGLLP 140
Query: 118 ---TPPPVDEDGR 127
P P+ E R
Sbjct: 141 RGQHPNPLREKNR 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.142 0.454
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,867,866
Number of Sequences: 62578
Number of extensions: 239658
Number of successful extensions: 614
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 606
Number of HSP's gapped (non-prelim): 8
length of query: 177
length of database: 14,973,337
effective HSP length: 92
effective length of query: 85
effective length of database: 9,216,161
effective search space: 783373685
effective search space used: 783373685
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 48 (23.1 bits)