BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030450
(177 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O32107|YUID_BACSU Uncharacterized membrane protein YuiD OS=Bacillus subtilis (strain
168) GN=yuiD PE=4 SV=1
Length = 158
Score = 97.1 bits (240), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 86/149 (57%), Gaps = 10/149 (6%)
Query: 35 NNLPLISAFLAFALAQFLKIFTTWYKEKRWDSKKMLDSGGMPSSHSATVSALAVAIGLQE 94
N PL+S+ A AQ +K+ + ++ D + +GGMPSSHSA V+AL+ + L+
Sbjct: 5 TNFPLLSSLAAIIFAQVIKVPIQFIVSRKLDWSLVTSTGGMPSSHSAAVTALSTGVALEH 64
Query: 95 GSGSPSFAIAVVLACIVMYDASGVRLHAGRQAELLNQIVC----------EFPPDHPLSS 144
G S FA++ + A I M+DA+GVR HAG QA ++N++V +FP
Sbjct: 65 GLDSSLFAVSAIFAVITMFDATGVRRHAGEQATVINKLVIDFNRFVNEAKDFPKAAEKEK 124
Query: 145 VRPLRELLGHTPLQVVAGGILGCVVAFLM 173
+ L+ELLGH P++V GG+ G ++ ++
Sbjct: 125 QKKLKELLGHQPIEVFFGGLTGILLTLVL 153
>sp|Q3B6F5|RL16_PELLD 50S ribosomal protein L16 OS=Pelodictyon luteolum (strain DSM 273)
GN=rplP PE=3 SV=1
Length = 139
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 83 VSALAVAIGLQEGSGSPSFAIAVVLACIVMYDASGVRLHAGRQA 126
VS A + G GSP F +AVV +M++A GV + +A
Sbjct: 74 VSKKAAETRMGSGKGSPEFWVAVVKPGRIMFEADGVPMEVATEA 117
>sp|P0CS12|TYSY_CRYNJ Thymidylate synthase OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=TMP1 PE=1
SV=1
Length = 317
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 24/108 (22%)
Query: 4 VITVGDAASFRSGQATSFLDSPPSSSSLFFPNNLPLISA---FLAFALAQFLKIFTTWYK 60
+I VG+ R+G T L +PPS N LPL++ FL +A+ L W+
Sbjct: 30 IINVGEVRPDRTGTGTVALFAPPSFRFSLADNTLPLLTTKRVFLRGVIAELL-----WFV 84
Query: 61 EKRWDSKKMLDSGGMPSSHSATVSALAVAIGLQEGSGSPSFAIAVVLA 108
D+ KML S G +G+ +G+GS F V L
Sbjct: 85 SGCTDA-KMLSSQG---------------VGIWDGNGSKEFLEKVGLG 116
>sp|P0CS13|TYSY_CRYNB Thymidylate synthase OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=TMP1 PE=3 SV=1
Length = 317
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 24/108 (22%)
Query: 4 VITVGDAASFRSGQATSFLDSPPSSSSLFFPNNLPLISA---FLAFALAQFLKIFTTWYK 60
+I VG+ R+G T L +PPS N LPL++ FL +A+ L W+
Sbjct: 30 IINVGEVRPDRTGTGTVALFAPPSFRFSLADNTLPLLTTKRVFLRGVIAELL-----WFV 84
Query: 61 EKRWDSKKMLDSGGMPSSHSATVSALAVAIGLQEGSGSPSFAIAVVLA 108
D+ KML S G +G+ +G+GS F V L
Sbjct: 85 SGCTDA-KMLSSQG---------------VGIWDGNGSKEFLEKVGLG 116
>sp|B3EGY3|RL16_CHLL2 50S ribosomal protein L16 OS=Chlorobium limicola (strain DSM 245 /
NBRC 103803) GN=rplP PE=3 SV=1
Length = 139
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 83 VSALAVAIGLQEGSGSPSFAIAVVLACIVMYDASGV 118
VS A + G GSP F +AVV +M++A GV
Sbjct: 74 VSKKAAETRMGSGKGSPEFWVAVVKPGRIMFEAEGV 109
>sp|A0A373|RK16_COFAR 50S ribosomal protein L16, chloroplastic OS=Coffea arabica GN=rpl16
PE=3 SV=1
Length = 135
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 83 VSALAVAIGLQEGSGSPSFAIAVVLACIVMYDASGVRLHAGRQA 126
++A + G GSP + +AVV ++Y+ GV H R+A
Sbjct: 74 ITARPAETRMGSGKGSPEYWVAVVKPGRILYEMGGVTEHIARRA 117
>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2
Length = 4834
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 124 RQAELLNQIVCEFPPDHPLSSVRPL-------RELLGHTPLQVVAGGILG 166
RQ L I+ FPP+HP+ V L E LGH L +V G LG
Sbjct: 1417 RQCHLTTPIM--FPPEHPVEEVGRLLLCCLLKHEDLGHVALSLVHAGALG 1464
>sp|Q9BVR0|HRC23_HUMAN Putative HERC2-like protein 3 OS=Homo sapiens GN=HERC2P3 PE=5 SV=2
Length = 1158
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 49/127 (38%), Gaps = 19/127 (14%)
Query: 50 QFLKIFTTWYKEKRWDSKKMLDSGGMPSSHSATVSALAVAIGLQEGSGSPSFAIAVVLAC 109
Q +I ++ +EK D GG P+S S S G S +F A+
Sbjct: 74 QTSQIHYSYNEEK--DEDHCSSPGGTPASKSRLCSHRRAL-----GDHSQAFLQAIADNN 126
Query: 110 IVMYDASGVRLHAGR---QAELLNQIVCEFPPDHPLSSVRPL-------RELLGHTPLQV 159
I ++ R Q L I+ FPP+HP+ V L E LGH L +
Sbjct: 127 IQDHNVKDFLCQIERYCRQCHLTTPIM--FPPEHPVEEVGRLLLCCLLKHEDLGHVALSL 184
Query: 160 VAGGILG 166
V G LG
Sbjct: 185 VHAGALG 191
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,421,681
Number of Sequences: 539616
Number of extensions: 2465920
Number of successful extensions: 6631
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 6623
Number of HSP's gapped (non-prelim): 12
length of query: 177
length of database: 191,569,459
effective HSP length: 110
effective length of query: 67
effective length of database: 132,211,699
effective search space: 8858183833
effective search space used: 8858183833
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)