Query 030450
Match_columns 177
No_of_seqs 131 out of 488
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 22:40:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030450.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030450hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ipb_A PHON protein, class A n 99.3 5.1E-12 1.8E-16 104.1 7.9 92 47-175 97-198 (230)
2 1d2t_A Acid phosphatase; all a 99.3 5.7E-12 1.9E-16 104.1 6.4 93 47-176 109-211 (231)
3 1qi9_A Protein (vanadium bromo 98.9 5.2E-09 1.8E-13 97.8 9.8 96 46-175 374-507 (556)
4 1up8_A Vanadium-dependent brom 98.0 8.3E-06 2.8E-10 76.9 7.7 69 72-174 480-573 (598)
5 3bb0_A Vanadium chloroperoxida 97.8 1.4E-05 4.7E-10 75.5 5.2 45 50-94 350-419 (609)
6 2ju0_B Phosphatidylinositol 4- 37.5 35 0.0012 22.4 3.4 38 128-167 11-49 (52)
7 2lx0_A Membrane fusion protein 20.1 47 0.0016 19.5 1.4 11 154-164 3-13 (32)
8 2ckw_A RNA-directed RNA polyme 16.7 46 0.0016 30.0 1.3 14 71-84 294-307 (515)
9 2k1k_A Ephrin type-A receptor 15.7 1E+02 0.0036 18.5 2.4 14 157-170 10-23 (38)
10 3bso_A RNA dependent RNA polym 14.0 70 0.0024 28.8 1.8 14 71-84 294-307 (510)
No 1
>2ipb_A PHON protein, class A nonspecific acid phosphatase PHON; class-A bacterial non-specific acid phosphatase; 2.23A {Salmonella typhimurium} PDB: 2a96_A 2akc_A
Probab=99.29 E-value=5.1e-12 Score=104.09 Aligned_cols=92 Identities=17% Similarity=0.112 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhhhcccccc----cc-----ccccCCCCchhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcccc
Q 030450 47 ALAQFLKIFTTWYKEKRWDS----KK-----MLDSGGMPSSHSATVSALAVAIGLQEGSGSPSFAIAVVLACIVMYDASG 117 (177)
Q Consensus 47 ~~AQ~iK~~i~~lr~~~~d~----~~-----l~~sGGMPSSHSA~v~aLat~igl~~G~~s~~Faia~v~A~IVmyDA~G 117 (177)
++.+++|..++|.||...+. .. .-...+|||+|+++.+++++.+.+..+.. ....+.++..|+++
T Consensus 97 ~~~~~lK~~~~r~RP~~~~~~~~~~~~~~~~~~~~~SFPSGHa~~a~a~a~~l~~~~~~~---~~~~~~~a~~v~~S--- 170 (230)
T 2ipb_A 97 YATASAKKYYMRTRPFVLFNHSTCRPEDENTLRKDGSYPSGHDAYSTLLALVLSQARPER---AQELARRGWEFGQS--- 170 (230)
T ss_dssp TTTHHHHHHHCCCCHHHHTTCCCSCGGGHHHHHTSCCSSCHHHHHHHHHHHHHHHHCGGG---HHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhCCCCcCccCCCCeeccCcccCCCCCCCcChHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---
Confidence 67789999999888654221 11 12345999999999999999888765432 23346788999998
Q ss_pred hhhhhhhhhHHHHHHhhcCCCCCCCCCCCCccccCC-CChhHHHHHHHHHHHHHHhhcc
Q 030450 118 VRLHAGRQAELLNQIVCEFPPDHPLSSVRPLRELLG-HTPLQVVAGGILGCVVAFLMRN 175 (177)
Q Consensus 118 VRr~aG~qA~~lN~L~~~~~~~~~~~~~~~lre~lG-Htp~EVl~GallGivia~i~~~ 175 (177)
|.|+| |+|.||++|.++|++++..+++
T Consensus 171 -------------------------------Rv~~G~H~~sDVlaG~~lG~~~~~~~~~ 198 (230)
T 2ipb_A 171 -------------------------------RVICGAHWQSDVDAGRYVGAVEFARLQT 198 (230)
T ss_dssp -------------------------------HHHHTSSCHHHHHHHHHHHHHHHHHHTT
T ss_pred -------------------------------HHhcCcccHHHHHHHHHHHHHHHHHHHc
Confidence 99999 9999999999999999987765
No 2
>1d2t_A Acid phosphatase; all alpha, hydrolase; 1.90A {Escherichia blattae} SCOP: a.111.1.1 PDB: 1eoi_A 1iw8_A
Probab=99.26 E-value=5.7e-12 Score=104.06 Aligned_cols=93 Identities=15% Similarity=0.094 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhhhccccc----ccccc-----ccCCCCchhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcccc
Q 030450 47 ALAQFLKIFTTWYKEKRWD----SKKML-----DSGGMPSSHSATVSALAVAIGLQEGSGSPSFAIAVVLACIVMYDASG 117 (177)
Q Consensus 47 ~~AQ~iK~~i~~lr~~~~d----~~~l~-----~sGGMPSSHSA~v~aLat~igl~~G~~s~~Faia~v~A~IVmyDA~G 117 (177)
.+.+.+|..++|.||...+ +.... ...+|||+|++..+++++.+.+..+.. ....+.++..|.++
T Consensus 109 ~~~~~lK~~~~r~RP~~~~~~~~~~p~~~~~~~~~~SFPSGHa~~a~a~a~~l~~~~~~~---~~~~~~~a~~v~~S--- 182 (231)
T 1d2t_A 109 LATRSAKDHYMRIRPFAFYGVSTCNTTEQDKLSKNGSYPSGHTSIGWATALVLAEINPQR---QNEILKRGYELGQS--- 182 (231)
T ss_dssp TTTHHHHHHHCCCCHHHHHTCCCSCC--CCCCCSSCCSSCHHHHHHHHHHHHHHHHCGGG---HHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhCCCCcCccCCCCceecCCcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---
Confidence 6778999999988876422 22112 345999999999999999888875432 23346788999998
Q ss_pred hhhhhhhhhHHHHHHhhcCCCCCCCCCCCCccccCC-CChhHHHHHHHHHHHHHHhhccC
Q 030450 118 VRLHAGRQAELLNQIVCEFPPDHPLSSVRPLRELLG-HTPLQVVAGGILGCVVAFLMRNS 176 (177)
Q Consensus 118 VRr~aG~qA~~lN~L~~~~~~~~~~~~~~~lre~lG-Htp~EVl~GallGivia~i~~~~ 176 (177)
|.|+| |+|.||++|.++|..++..+++.
T Consensus 183 -------------------------------RvylGvH~psDVlaG~~lG~~~~~~~~~~ 211 (231)
T 1d2t_A 183 -------------------------------RVICGYHWQSDVDAARVVGSAVVATLHTN 211 (231)
T ss_dssp -------------------------------HHHHTSSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred -------------------------------HHhcCCcCHHHHHHHHHHHHHHHHHHHcC
Confidence 99999 99999999999999999877653
No 3
>1qi9_A Protein (vanadium bromoperoxidase); haloperoxidase, oxidoreductase; 2.05A {Ascophyllum nodosum} SCOP: a.111.1.2
Probab=98.89 E-value=5.2e-09 Score=97.80 Aligned_cols=96 Identities=23% Similarity=0.323 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHhhhccc--cccccccc---------cCCCCchhHHHHHHHHHHHHHHhCCC-------ch--------
Q 030450 46 FALAQFLKIFTTWYKEKR--WDSKKMLD---------SGGMPSSHSATVSALAVAIGLQEGSG-------SP-------- 99 (177)
Q Consensus 46 ~~~AQ~iK~~i~~lr~~~--~d~~~l~~---------sGGMPSSHSA~v~aLat~igl~~G~~-------s~-------- 99 (177)
|...|++|.++++-|+.. .+|..++. ..+|||+||+..+++++.+....+-+ .+
T Consensus 374 ~~~~~lLK~l~~RpRP~~~~~~~~~Ll~~~~~~~tp~~~SFPSGHAt~A~A~A~vL~~l~g~~~~~~~~~~r~~~~~~G~ 453 (556)
T 1qi9_A 374 LENAELLKRVAAINAAQNPNNEVTYLLPQAIQEGSPTHPSYPSGHATQNGAFATVLKALIGLDRGGDCYPDPVYPDDDGL 453 (556)
T ss_dssp HTCHHHHHHHHHHHHHHSGGGCCCCCCCBSSTTCSCSSCCSSCHHHHHHHHHHHHHHHHHCHHHHTSBCSSCEEECTTSS
T ss_pred hhhhhHHHhhhccCCCCCCccccceeeecccccCCCCCCCCChHHHHHHHHHHHHHHHHHhccccccccccccccccccc
Confidence 333579999999999864 34444432 33999999999999999998765311 10
Q ss_pred ----------HHH-HHHHHHHHHhhcccchhhhhhhhhHHHHHHhhcCCCCCCCCCCCCccccCC-CChhHHHHHHHHHH
Q 030450 100 ----------SFA-IAVVLACIVMYDASGVRLHAGRQAELLNQIVCEFPPDHPLSSVRPLRELLG-HTPLQVVAGGILGC 167 (177)
Q Consensus 100 ----------~Fa-ia~v~A~IVmyDA~GVRr~aG~qA~~lN~L~~~~~~~~~~~~~~~lre~lG-Htp~EVl~GallGi 167 (177)
.+. -...++..|.++ |.|+| |+|.||++|.++|.
T Consensus 454 ~r~~~~~~~l~~~~~l~~lA~lIg~S----------------------------------RVYlGVHYPSDVlaG~lLG~ 499 (556)
T 1qi9_A 454 KLIDFRGSCLTFEGEINKLAVNVAFG----------------------------------RQMLGIHYRFDGIQGLLLGE 499 (556)
T ss_dssp SEEECCSSCCBHHHHHHHHHHHHHHH----------------------------------HHHTTSCCHHHHHHHHHHHH
T ss_pred cccccccceeehhhHHHHHHHHHHHH----------------------------------HHeeCccCHHHHHHHHHHHH
Confidence 011 123478889988 99999 99999999999999
Q ss_pred HHHHhhcc
Q 030450 168 VVAFLMRN 175 (177)
Q Consensus 168 via~i~~~ 175 (177)
.++..+++
T Consensus 500 ~va~~vl~ 507 (556)
T 1qi9_A 500 TITVRTLH 507 (556)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99977643
No 4
>1up8_A Vanadium-dependent bromoperoxidase 1; haloperoxidase, vanadate; 2.20A {Corallina pilulifera} SCOP: a.111.1.2 PDB: 1qhb_A
Probab=98.04 E-value=8.3e-06 Score=76.91 Aligned_cols=69 Identities=20% Similarity=0.086 Sum_probs=55.1
Q ss_pred cCCCCchhHHHHHHHHHHHHHHhCCCc----h--------------------HHHHHHHHHHHHhhcccchhhhhhhhhH
Q 030450 72 SGGMPSSHSATVSALAVAIGLQEGSGS----P--------------------SFAIAVVLACIVMYDASGVRLHAGRQAE 127 (177)
Q Consensus 72 sGGMPSSHSA~v~aLat~igl~~G~~s----~--------------------~Faia~v~A~IVmyDA~GVRr~aG~qA~ 127 (177)
...+||.||+..+|.++.+....+-+. + +......+|..+.++
T Consensus 480 ~pSYPSGHAt~S~A~A~vL~~lf~~~~~~~~~~~~~~~G~~R~~p~~g~~ltv~~sl~~lA~eig~S------------- 546 (598)
T 1up8_A 480 HPSYGSGHAVVAGACVTILKAFFDSGIEIDQVFEVDKDEDKLVKSSFKGTLTVAGELNKLADNIAIG------------- 546 (598)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHHBTTTCBCSCCEEECSSSSSEEECCCCSCCBHHHHHHHHHHHHHHH-------------
T ss_pred CCCCChHHHHHHHHHHHHHHHHhccccccccccccccCcccccccccccchhHHHHHHHHHHHHHHH-------------
Confidence 449999999999999999988776432 1 112345677778877
Q ss_pred HHHHHhhcCCCCCCCCCCCCccccCC-CChhHHHHHHHHHHHHHHhhc
Q 030450 128 LLNQIVCEFPPDHPLSSVRPLRELLG-HTPLQVVAGGILGCVVAFLMR 174 (177)
Q Consensus 128 ~lN~L~~~~~~~~~~~~~~~lre~lG-Htp~EVl~GallGivia~i~~ 174 (177)
|.|+| |+|.+|++|..+|..++..+.
T Consensus 547 ---------------------RVYlGVHypSDVlAG~~LG~aVa~~vl 573 (598)
T 1up8_A 547 ---------------------RNMAGVHYFSDQFESLLLGEQVAIGIL 573 (598)
T ss_dssp ---------------------HHHHTSCCHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------hheeeeecHHHHHHHHHHHHHHHHHHH
Confidence 99999 999999999999999987653
No 5
>3bb0_A Vanadium chloroperoxidase; protein phosphate-intermediate complex, phospatase activity, chloride, metal-binding, oxidoreductase, secreted; 1.50A {Curvularia inaequalis} PDB: 1vns_A 1vnc_A 1vni_A 1idq_A 1vne_A 1vnf_A 1idu_A 1vng_A 1vnh_A
Probab=97.83 E-value=1.4e-05 Score=75.51 Aligned_cols=45 Identities=11% Similarity=-0.137 Sum_probs=34.5
Q ss_pred HHHHHHHHhhhcc------------ccccccccc-------------cCCCCchhHHHHHHHHHHHHHHh
Q 030450 50 QFLKIFTTWYKEK------------RWDSKKMLD-------------SGGMPSSHSATVSALAVAIGLQE 94 (177)
Q Consensus 50 Q~iK~~i~~lr~~------------~~d~~~l~~-------------sGGMPSSHSA~v~aLat~igl~~ 94 (177)
-..|..++|+|+. ..+|..+.. ..++||+||++.+|.++.+....
T Consensus 350 w~~K~~y~R~RP~taI~~~~~~~~~dp~w~~l~~~~~~~~~~~~tP~~pSYPSGHAt~s~A~A~vL~~~f 419 (609)
T 3bb0_A 350 WKEKWEFEFWRPLSGVRDDGRPDHGDPFWLTLGAPATNTNDIPFKPPFPAYPSGHATFGGAVFQMVRRYY 419 (609)
T ss_dssp HHHHHHHCBCCHHHHHHTCCCTTTCCTTCCBCCBCCTTSSSCCBCCSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhcCCCcCchhhcccccccCCccchhhcccccccccccCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4579999998873 224554431 24999999999999999999887
No 6
>2ju0_B Phosphatidylinositol 4-kinase PIK1; EF-hand, calcium, ptdins 4-kinase, frequenin, yeast, lipoprotein, membrane, myristate, nucleus; NMR {Saccharomyces cerevisiae}
Probab=37.54 E-value=35 Score=22.37 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=24.5
Q ss_pred HHHHHhhcCCCCCCC-CCCCCccccCCCChhHHHHHHHHHH
Q 030450 128 LLNQIVCEFPPDHPL-SSVRPLRELLGHTPLQVVAGGILGC 167 (177)
Q Consensus 128 ~lN~L~~~~~~~~~~-~~~~~lre~lGHtp~EVl~GallGi 167 (177)
++|+|-.-+-..++. ...++.||. =.|.=|++|++++-
T Consensus 11 ~~NklQ~ilFn~~~~~~~~~k~~EN--v~PalVL~s~v~sS 49 (52)
T 2ju0_B 11 VLNNLQTNLFNTSSGSDKNVKIHEN--VAPALVLSSMIMSA 49 (52)
T ss_dssp HHHHHTCCSSCSSCCCCTTCCSSCS--HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCccccchHHhhcc--ccHHHHHHHHHHHH
Confidence 788886655433322 233455555 47999999998864
No 7
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=20.13 E-value=47 Score=19.49 Aligned_cols=11 Identities=45% Similarity=0.640 Sum_probs=9.6
Q ss_pred CChhHHHHHHH
Q 030450 154 HTPLQVVAGGI 164 (177)
Q Consensus 154 Htp~EVl~Gal 164 (177)
||--||++|.+
T Consensus 3 htiweviaglv 13 (32)
T 2lx0_A 3 HTIWEVIAGLV 13 (32)
T ss_dssp SSSHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 89999999954
No 8
>2ckw_A RNA-directed RNA polymerase; hydrolase, nucleotide-binding, nucleotidyltransferase, covalent protein-RNA linkage, RNA elongation; 2.3A {Sapporo virus} PDB: 2uuw_A 2wk4_A 2uut_A
Probab=16.69 E-value=46 Score=29.97 Aligned_cols=14 Identities=36% Similarity=0.555 Sum_probs=12.5
Q ss_pred ccCCCCchhHHHHH
Q 030450 71 DSGGMPSSHSATVS 84 (177)
Q Consensus 71 ~sGGMPSSHSA~v~ 84 (177)
..|||||+|.+++.
T Consensus 294 ~~~G~PSG~p~Tsi 307 (515)
T 2ckw_A 294 TRGGLPSGMPFTSV 307 (515)
T ss_dssp CSSSCCTTSTTHHH
T ss_pred EeCcccCCCCeeec
Confidence 58899999999887
No 9
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=15.65 E-value=1e+02 Score=18.53 Aligned_cols=14 Identities=14% Similarity=0.199 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHH
Q 030450 157 LQVVAGGILGCVVA 170 (177)
Q Consensus 157 ~EVl~GallGivia 170 (177)
.-.++|+++|.+++
T Consensus 10 ~GaIAGiVvG~v~g 23 (38)
T 2k1k_A 10 GGEIVAVIFGLLLG 23 (38)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCceeeeehHHHHH
Confidence 44557777777655
No 10
>3bso_A RNA dependent RNA polymerase; RNA-dependent RNA polymerase, viral replication, antiviral E inhibitor, helicase, hydrolase; HET: CTP; 1.74A {Norwalk virus} PDB: 3bsn_A* 3h5x_A* 3h5y_A* 1sh0_A 1sh2_A 1sh3_A 2b43_A
Probab=14.02 E-value=70 Score=28.76 Aligned_cols=14 Identities=29% Similarity=0.394 Sum_probs=12.3
Q ss_pred ccCCCCchhHHHHH
Q 030450 71 DSGGMPSSHSATVS 84 (177)
Q Consensus 71 ~sGGMPSSHSA~v~ 84 (177)
..|||||+|..++.
T Consensus 294 ~~~G~PSG~p~Tsi 307 (510)
T 3bso_A 294 INEGLPSGVPCTSQ 307 (510)
T ss_dssp ECSSCCTTSTTHHH
T ss_pred EeCcccCCCCeeec
Confidence 58899999998876
Done!