BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030452
         (177 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2IGM|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
           Mutant
 pdb|2IGM|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
           Mutant
 pdb|2IGM|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
           Mutant
 pdb|2IGM|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
           Mutant
 pdb|2IGM|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
           Mutant
 pdb|2IGM|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
           Mutant
 pdb|2IGM|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
           Mutant
 pdb|2IGM|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
           Mutant
          Length = 623

 Score = 30.0 bits (66), Expect = 0.65,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 24/37 (64%)

Query: 124 VEPAVFLSLYGINKKKFNKEACNCCSDTIKAIYGSRS 160
           +EP + L+L G ++  F+++  NCC +T   ++G ++
Sbjct: 541 MEPGLVLNLGGTHRMGFDEKEDNCCVNTDSRVFGFKN 577


>pdb|3K4B|A Chain A, Pyranose 2-Oxidase T169s Mutant
 pdb|3LSK|A Chain A, Pyranose 2-Oxidase T169s Acetate Complex
 pdb|3LSK|B Chain B, Pyranose 2-Oxidase T169s Acetate Complex
 pdb|3LSK|C Chain C, Pyranose 2-Oxidase T169s Acetate Complex
 pdb|3LSK|D Chain D, Pyranose 2-Oxidase T169s Acetate Complex
          Length = 623

 Score = 29.6 bits (65), Expect = 0.98,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 119 PYFCRVEPAVFLSLYGINKKKFNKEACNCCSDTIKAIYGSRS 160
           P F  +EP + L L G ++  F+++  NCC +T   ++G ++
Sbjct: 538 PQF--MEPGLVLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKN 577


>pdb|2F5V|A Chain A, Reaction Geometry And Thermostability Mutant Of Pyranose
           2-Oxidase From The White-Rot Fungus Peniophora Sp
          Length = 595

 Score = 29.6 bits (65), Expect = 0.98,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 119 PYFCRVEPAVFLSLYGINKKKFNKEACNCCSDTIKAIYGSRS 160
           P F  +EP + L L G ++  F+++  NCC +T   ++G ++
Sbjct: 510 PQF--MEPGLVLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKN 549


>pdb|1TT0|A Chain A, Crystal Structure Of Pyranose 2-Oxidase
 pdb|1TT0|B Chain B, Crystal Structure Of Pyranose 2-Oxidase
 pdb|1TT0|C Chain C, Crystal Structure Of Pyranose 2-Oxidase
 pdb|1TT0|D Chain D, Crystal Structure Of Pyranose 2-Oxidase
 pdb|2IGK|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase
 pdb|2IGK|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase
 pdb|2IGK|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase
 pdb|2IGK|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase
 pdb|2IGK|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase
 pdb|2IGK|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase
 pdb|2IGK|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase
 pdb|2IGK|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase
          Length = 623

 Score = 29.6 bits (65), Expect = 0.99,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 119 PYFCRVEPAVFLSLYGINKKKFNKEACNCCSDTIKAIYGSRS 160
           P F  +EP + L L G ++  F+++  NCC +T   ++G ++
Sbjct: 538 PQF--MEPGLVLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKN 577


>pdb|3LSH|A Chain A, Pyranose 2-Oxidase T169a, Monoclinic
 pdb|3LSH|B Chain B, Pyranose 2-Oxidase T169a, Monoclinic
 pdb|3LSH|C Chain C, Pyranose 2-Oxidase T169a, Monoclinic
 pdb|3LSH|D Chain D, Pyranose 2-Oxidase T169a, Monoclinic
 pdb|3LSI|A Chain A, Pyranose 2-Oxidase T169a, Tetragonal
 pdb|3LSI|B Chain B, Pyranose 2-Oxidase T169a, Tetragonal
          Length = 623

 Score = 29.6 bits (65), Expect = 0.99,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 119 PYFCRVEPAVFLSLYGINKKKFNKEACNCCSDTIKAIYGSRS 160
           P F  +EP + L L G ++  F+++  NCC +T   ++G ++
Sbjct: 538 PQF--MEPGLVLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKN 577


>pdb|3K4N|A Chain A, Pyranose 2-Oxidase F454aS455AY456A MUTANT
 pdb|3K4N|B Chain B, Pyranose 2-Oxidase F454aS455AY456A MUTANT
          Length = 623

 Score = 29.6 bits (65), Expect = 0.99,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 119 PYFCRVEPAVFLSLYGINKKKFNKEACNCCSDTIKAIYGSRS 160
           P F  +EP + L L G ++  F+++  NCC +T   ++G ++
Sbjct: 538 PQF--MEPGLVLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKN 577


>pdb|3K4M|A Chain A, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
 pdb|3K4M|B Chain B, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
 pdb|3K4M|C Chain C, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
 pdb|3K4M|D Chain D, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
 pdb|3K4M|E Chain E, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
 pdb|3K4M|F Chain F, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
 pdb|3K4M|G Chain G, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
 pdb|3K4M|H Chain H, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
          Length = 623

 Score = 29.6 bits (65), Expect = 0.99,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 119 PYFCRVEPAVFLSLYGINKKKFNKEACNCCSDTIKAIYGSRS 160
           P F  +EP + L L G ++  F+++  NCC +T   ++G ++
Sbjct: 538 PQF--MEPGLVLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKN 577


>pdb|3K4K|A Chain A, Pyranose 2-Oxidase F454n Mutant
 pdb|3K4L|A Chain A, Pyranose 2-Oxidase F454n Mutant In Complex With 2fg
 pdb|3K4L|B Chain B, Pyranose 2-Oxidase F454n Mutant In Complex With 2fg
          Length = 623

 Score = 29.6 bits (65), Expect = 0.99,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 119 PYFCRVEPAVFLSLYGINKKKFNKEACNCCSDTIKAIYGSRS 160
           P F  +EP + L L G ++  F+++  NCC +T   ++G ++
Sbjct: 538 PQF--MEPGLVLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKN 577


>pdb|3BG7|A Chain A, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
 pdb|3BG7|B Chain B, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
 pdb|3BG7|C Chain C, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
 pdb|3BG7|D Chain D, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
 pdb|3BG7|E Chain E, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
 pdb|3BG7|F Chain F, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
 pdb|3BG7|G Chain G, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
 pdb|3BG7|H Chain H, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
          Length = 623

 Score = 29.6 bits (65), Expect = 0.99,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 119 PYFCRVEPAVFLSLYGINKKKFNKEACNCCSDTIKAIYGSRS 160
           P F  +EP + L L G ++  F+++  NCC +T   ++G ++
Sbjct: 538 PQF--MEPGLVLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKN 577


>pdb|3K4J|A Chain A, Pyranose 2-Oxidase H450q Mutant
          Length = 623

 Score = 29.6 bits (65), Expect = 1.00,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 23/37 (62%)

Query: 124 VEPAVFLSLYGINKKKFNKEACNCCSDTIKAIYGSRS 160
           +EP + L L G ++  F+++  NCC +T   ++G ++
Sbjct: 541 MEPGLVLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKN 577


>pdb|3K4C|A Chain A, Pyranose 2-Oxidase H167aT169G MUTANT
 pdb|3K4C|B Chain B, Pyranose 2-Oxidase H167aT169G MUTANT
 pdb|3K4C|C Chain C, Pyranose 2-Oxidase H167aT169G MUTANT
 pdb|3K4C|D Chain D, Pyranose 2-Oxidase H167aT169G MUTANT
          Length = 623

 Score = 29.6 bits (65), Expect = 1.00,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 23/37 (62%)

Query: 124 VEPAVFLSLYGINKKKFNKEACNCCSDTIKAIYGSRS 160
           +EP + L L G ++  F+++  NCC +T   ++G ++
Sbjct: 541 MEPGLVLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKN 577


>pdb|2IGN|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
           Mutant
 pdb|2IGN|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
           Mutant
 pdb|2IGN|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
           Mutant
 pdb|2IGN|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
           Mutant
 pdb|2IGN|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
           Mutant
 pdb|2IGN|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
           Mutant
 pdb|2IGN|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
           Mutant
 pdb|2IGN|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
           Mutant
 pdb|2IGO|A Chain A, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
           2- Fluoro-2-Deoxy-D-Glucose
 pdb|2IGO|B Chain B, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
           2- Fluoro-2-Deoxy-D-Glucose
 pdb|2IGO|D Chain D, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
           2- Fluoro-2-Deoxy-D-Glucose
 pdb|2IGO|C Chain C, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
           2- Fluoro-2-Deoxy-D-Glucose
 pdb|2IGO|E Chain E, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
           2- Fluoro-2-Deoxy-D-Glucose
 pdb|2IGO|F Chain F, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
           2- Fluoro-2-Deoxy-D-Glucose
 pdb|2IGO|H Chain H, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
           2- Fluoro-2-Deoxy-D-Glucose
 pdb|2IGO|G Chain G, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
           2- Fluoro-2-Deoxy-D-Glucose
 pdb|3LSM|A Chain A, Pyranose 2-Oxidase H167a Mutant With Flavin N(5) Sulfite
           Adduct
 pdb|3LSM|B Chain B, Pyranose 2-Oxidase H167a Mutant With Flavin N(5) Sulfite
           Adduct
 pdb|3PL8|A Chain A, Pyranose 2-Oxidase H167a Complex With
           3-Deoxy-3-Fluoro-Beta-D-Glucose
          Length = 623

 Score = 29.6 bits (65), Expect = 1.00,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 23/37 (62%)

Query: 124 VEPAVFLSLYGINKKKFNKEACNCCSDTIKAIYGSRS 160
           +EP + L L G ++  F+++  NCC +T   ++G ++
Sbjct: 541 MEPGLVLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKN 577


>pdb|1TZL|A Chain A, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
           Fungus Peniophora Sp.
 pdb|1TZL|B Chain B, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
           Fungus Peniophora Sp.
 pdb|1TZL|C Chain C, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
           Fungus Peniophora Sp.
 pdb|1TZL|D Chain D, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
           Fungus Peniophora Sp.
 pdb|1TZL|E Chain E, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
           Fungus Peniophora Sp.
 pdb|1TZL|F Chain F, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
           Fungus Peniophora Sp.
 pdb|1TZL|G Chain G, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
           Fungus Peniophora Sp.
 pdb|1TZL|H Chain H, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
           Fungus Peniophora Sp
          Length = 622

 Score = 29.3 bits (64), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 22/36 (61%)

Query: 125 EPAVFLSLYGINKKKFNKEACNCCSDTIKAIYGSRS 160
           EP + L L G ++  F+++  NCC +T   ++G ++
Sbjct: 541 EPGLVLHLGGTHRXGFDEKEDNCCVNTDSRVFGFKN 576


>pdb|3KAE|A Chain A, Cdc27 N-Terminus
 pdb|3KAE|B Chain B, Cdc27 N-Terminus
 pdb|3KAE|C Chain C, Cdc27 N-Terminus
 pdb|3KAE|D Chain D, Cdc27 N-Terminus
          Length = 242

 Score = 28.5 bits (62), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 69  KLDKGPDF-ATPEEIFDDPSDVELYRSLIG 97
           K+++ PD  A  +E+F DP D E + SL+G
Sbjct: 92  KVERDPDVDARIQEMFVDPGDEEFFESLLG 121


>pdb|3BLY|A Chain A, Pyranose 2-Oxidase From Trametes Multicolor, E542kL537W
          Length = 623

 Score = 27.7 bits (60), Expect = 3.2,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 119 PYFCRVEPAVFLSLYGINKKKFNKEACNCCSDTIKAIYGSRS 160
           P F  ++P + L L G ++  F+++  NCC +T   ++G ++
Sbjct: 538 PQF--MKPGLVLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKN 577


>pdb|2F6C|A Chain A, Reaction Geometry And Thermostability Of Pyranose
           2-Oxidase From The White-Rot Fungus Peniophora Sp.,
           Thermostability Mutant E542k
          Length = 595

 Score = 27.7 bits (60), Expect = 3.2,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 119 PYFCRVEPAVFLSLYGINKKKFNKEACNCCSDTIKAIYGSRS 160
           P F  ++P + L L G ++  F+++  NCC +T   ++G ++
Sbjct: 510 PQF--MKPGLVLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKN 549


>pdb|3BG6|A Chain A, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
 pdb|3BG6|B Chain B, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
 pdb|3BG6|C Chain C, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
 pdb|3BG6|D Chain D, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
 pdb|3BG6|E Chain E, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
 pdb|3BG6|F Chain F, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
 pdb|3BG6|G Chain G, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
 pdb|3BG6|H Chain H, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
          Length = 623

 Score = 27.7 bits (60), Expect = 3.3,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 119 PYFCRVEPAVFLSLYGINKKKFNKEACNCCSDTIKAIYGSRS 160
           P F  ++P + L L G ++  F+++  NCC +T   ++G ++
Sbjct: 538 PQF--MKPGLVLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKN 577


>pdb|3FDY|A Chain A, Pyranose 2-Oxidase Thermostable Triple Mutant,
           T169gE542KV546C
          Length = 623

 Score = 26.9 bits (58), Expect = 5.5,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 23/37 (62%)

Query: 124 VEPAVFLSLYGINKKKFNKEACNCCSDTIKAIYGSRS 160
           ++P + L L G ++  F+++  NCC +T   ++G ++
Sbjct: 541 MKPGLCLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKN 577


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.452 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,835,894
Number of Sequences: 62578
Number of extensions: 191787
Number of successful extensions: 294
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 277
Number of HSP's gapped (non-prelim): 18
length of query: 177
length of database: 14,973,337
effective HSP length: 92
effective length of query: 85
effective length of database: 9,216,161
effective search space: 783373685
effective search space used: 783373685
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)