Query 030452
Match_columns 177
No_of_seqs 163 out of 976
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 13:56:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030452.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030452hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03692 CxxCxxCC: Putative zi 99.6 1.7E-16 3.6E-21 112.7 2.8 67 59-128 1-72 (85)
2 COG0727 Predicted Fe-S-cluster 99.4 4.5E-14 9.9E-19 108.3 0.2 90 53-153 6-107 (132)
3 PRK05170 hypothetical protein; 97.3 6.4E-05 1.4E-09 60.3 0.3 46 59-120 23-68 (147)
4 PF11307 DUF3109: Protein of u 94.0 0.029 6.2E-07 46.7 1.7 79 51-129 11-129 (183)
5 COG2983 Uncharacterized conser 93.2 0.026 5.6E-07 45.4 0.1 20 101-120 54-73 (153)
6 COG1143 NuoI Formate hydrogenl 38.4 25 0.00054 28.8 2.2 45 24-70 22-66 (172)
7 PRK08348 NADH-plastoquinone ox 30.3 38 0.00082 25.3 1.9 37 32-69 16-52 (120)
8 PF12797 Fer4_2: 4Fe-4S bindin 26.5 23 0.00049 19.8 0.1 10 58-68 8-17 (22)
9 PRK08222 hydrogenase 4 subunit 22.0 56 0.0012 26.6 1.6 37 31-70 13-49 (181)
10 PF06446 Hepcidin: Hepcidin; 21.6 20 0.00044 24.4 -0.9 7 63-69 50-56 (57)
No 1
>PF03692 CxxCxxCC: Putative zinc- or iron-chelating domain; InterPro: IPR005358 This family of proteins contain 8 conserved cysteines that may form a zinc binding site. The function of these proteins is unknown.
Probab=99.62 E-value=1.7e-16 Score=112.68 Aligned_cols=67 Identities=34% Similarity=0.621 Sum_probs=51.3
Q ss_pred CchhhhhhhcCCCCCCCcCCHHHhhcChhhHHhh-----hcccCCCCccccccCCCCCCcccCCCCccccccchh
Q 030452 59 RCVQGCGACCKLDKGPDFATPEEIFDDPSDVELY-----RSLIGPDGWCINYEKSTRKCSIYPERPYFCRVEPAV 128 (177)
Q Consensus 59 ~C~~~CG~CC~~~~~~i~lt~~ei~~l~e~~~~y-----~~l~~~dG~C~FLD~~~~~CtIYe~RP~~CR~yPf~ 128 (177)
.|. +||.||+. ..+.|+..|+.++....... ......+|+|+||++++++|+||++||++||.||++
T Consensus 1 ~C~-~Cg~CC~~--~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~C~fL~~~~~~C~Iy~~RP~~CR~~p~~ 72 (85)
T PF03692_consen 1 KCR-QCGACCRG--YRVPLTPEEIERIAEHLGIEEEFFLERYAREDGPCPFLDEDNGRCSIYEVRPLICRTYPFW 72 (85)
T ss_pred Ccc-cHhHHHcC--CCcCCCHHHHHHHHHHhcCchhhhHHHhhccCCCCcCcCCCCCccCCcCccCHhHeeCccc
Confidence 585 89999993 35778999987776433211 112237789999997767999999999999999988
No 2
>COG0727 Predicted Fe-S-cluster oxidoreductase [General function prediction only]
Probab=99.39 E-value=4.5e-14 Score=108.28 Aligned_cols=90 Identities=27% Similarity=0.410 Sum_probs=57.4
Q ss_pred ccCCCCCchhhhhhhcCCCCCCCcCCHHHhhcCh--------hhHHhhhc----ccCCCCccccccCCCCCCcccCCCCc
Q 030452 53 KMEPLWRCVQGCGACCKLDKGPDFATPEEIFDDP--------SDVELYRS----LIGPDGWCINYEKSTRKCSIYPERPY 120 (177)
Q Consensus 53 ~~~~~f~C~~~CG~CC~~~~~~i~lt~~ei~~l~--------e~~~~y~~----l~~~dG~C~FLD~~~~~CtIYe~RP~ 120 (177)
.+...+.| ..||+||........ ..++.++. .....+.. ....+++|+|||.+++.|+||++||.
T Consensus 6 ~~~~~~~c-~~Cg~cC~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~fl~~~~~~C~Iy~~RP~ 82 (132)
T COG0727 6 FKFIFFCC-EGCGACCCAIEVSLP--EPGFDRGELKGYPADTEALPKYLRCKLLDVDINGRCVFLDGETKLCRIYEIRPL 82 (132)
T ss_pred hhhhhhhH-HHhhHHhcCCCCCcc--hhhhhHHHhcCCCccceeecccceeeeecccCCCCCEEecCCCCceeecCcCch
Confidence 34556789 599999996543332 22222221 01122222 22455699999987778999999999
Q ss_pred cccccchhhhhhhCCCchhhHHHHhhhCccccc
Q 030452 121 FCRVEPAVFLSLYGINKKKFNKEACNCCSDTIK 153 (177)
Q Consensus 121 ~CR~yPf~~~~~~g~~~~e~~~~a~~~Cpg~i~ 153 (177)
+||+||++.....+ .....|++...
T Consensus 83 ~Cr~~P~~~~~~~~--------~~~~~C~~~~~ 107 (132)
T COG0727 83 ACRTFPFVEERGTG--------EADELCPGIRL 107 (132)
T ss_pred hheecceEEeccce--------eehhhCchhhh
Confidence 99999998765432 34456666554
No 3
>PRK05170 hypothetical protein; Provisional
Probab=97.29 E-value=6.4e-05 Score=60.26 Aligned_cols=46 Identities=28% Similarity=0.546 Sum_probs=31.8
Q ss_pred CchhhhhhhcCCCCCCCcCCHHHhhcChhhHHhhhcccCCCCccccccCCCCCCcccCCCCc
Q 030452 59 RCVQGCGACCKLDKGPDFATPEEIFDDPSDVELYRSLIGPDGWCINYEKSTRKCSIYPERPY 120 (177)
Q Consensus 59 ~C~~~CG~CC~~~~~~i~lt~~ei~~l~e~~~~y~~l~~~dG~C~FLD~~~~~CtIYe~RP~ 120 (177)
-| .|||.||-+- +..+|- ..+...+..|.+||.++.+|++|+.|=.
T Consensus 23 LC-DgCG~CCl~K-----leDedt----------gei~~T~vaC~lLD~~T~~C~~Y~~R~~ 68 (147)
T PRK05170 23 LC-DGCGKCCLHK-----LEDEDT----------GEIYYTNVACRLLDIKTCQCSDYENRFE 68 (147)
T ss_pred Hh-hhhhHHhcee-----eeccCC----------CcEEEcceecccccCCCCCCCChhhhcc
Confidence 49 5999999742 222220 1122345689999988999999999954
No 4
>PF11307 DUF3109: Protein of unknown function (DUF3109); InterPro: IPR021458 This bacterial family of proteins has no known function.
Probab=94.03 E-value=0.029 Score=46.65 Aligned_cols=79 Identities=24% Similarity=0.384 Sum_probs=49.5
Q ss_pred ccccCCCCCc-hhhh-hhhcCCCCCCCcCCHHHhhcChh---hHHhhhc-------------ccC----------CCCcc
Q 030452 51 IEKMEPLWRC-VQGC-GACCKLDKGPDFATPEEIFDDPS---DVELYRS-------------LIG----------PDGWC 102 (177)
Q Consensus 51 ~~~~~~~f~C-~~~C-G~CC~~~~~~i~lt~~ei~~l~e---~~~~y~~-------------l~~----------~dG~C 102 (177)
.+.-...|.| ...| |+||-.-....+|+.+|+..|.+ .+..|++ ... .++.|
T Consensus 11 ~di~~~~F~CdL~~CkG~CCvEGd~GAPl~~~E~~~le~~~~~v~~~L~~~~~~~I~~qG~~~~d~~Gd~~T~~v~g~eC 90 (183)
T PF11307_consen 11 EDILEEKFVCDLSACKGACCVEGDAGAPLEEEEIAILEEIYPKVKPYLSPEGIAAIERQGVAYEDEDGDLVTPIVNGKEC 90 (183)
T ss_pred HHHHhhcccCchhcCCCCCccCCCcCCCCCHHHHHHHHHHhHHHhhhcCHHHHHHHHHcCceEEecCCCEEeeeEcCCee
Confidence 4455667888 3488 99997322357788988765543 2222221 001 23359
Q ss_pred ccccC-CC--CCCcccC---------CCCccccccchhh
Q 030452 103 INYEK-ST--RKCSIYP---------ERPYFCRVEPAVF 129 (177)
Q Consensus 103 ~FLD~-~~--~~CtIYe---------~RP~~CR~yPf~~ 129 (177)
+|.-- ++ -.|.|.. .+|..|++||--.
T Consensus 91 vf~~~~e~G~~~CaiE~Ay~~G~~~~~KPISChLYPIRv 129 (183)
T PF11307_consen 91 VFTCYDENGICLCAIEKAYREGKIDFKKPISCHLYPIRV 129 (183)
T ss_pred EEEEEccCCEEEEHHHHHHHcCCCCCCCCceEeecceEE
Confidence 99854 33 3788765 7999999999433
No 5
>COG2983 Uncharacterized conserved protein [Function unknown]
Probab=93.23 E-value=0.026 Score=45.39 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=17.3
Q ss_pred ccccccCCCCCCcccCCCCc
Q 030452 101 WCINYEKSTRKCSIYPERPY 120 (177)
Q Consensus 101 ~C~FLD~~~~~CtIYe~RP~ 120 (177)
.|.+||.++.+|+.|+.|-.
T Consensus 54 aC~lLd~etcrC~~Y~~Rf~ 73 (153)
T COG2983 54 ACELLDPETCRCKDYENRFK 73 (153)
T ss_pred eeeecCccccccccHHhhhc
Confidence 49999998999999998843
No 6
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=38.42 E-value=25 Score=28.82 Aligned_cols=45 Identities=22% Similarity=0.361 Sum_probs=32.9
Q ss_pred hhhhcCCCCcccCCCCCCcccccccccccccCCCCCchhhhhhhcCC
Q 030452 24 RAKKLKKPNTKQNNKNSTSTSSSVGFGIEKMEPLWRCVQGCGACCKL 70 (177)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~f~C~~~CG~CC~~ 70 (177)
..|.+-++-.|++=|....+.+ -+|..........|. +|+.|=.-
T Consensus 22 ~~K~~fk~~vT~~YP~e~~~~~-~rfRG~~~l~~~~CI-gC~lCa~i 66 (172)
T COG1143 22 TLKNLFKKPVTIEYPEEKIPLS-PRFRGRHVLDRDKCI-GCGLCANI 66 (172)
T ss_pred HHHHHhCCCchhhCccccCCCC-CCccceeeccccCCc-chhHHHhh
Confidence 3445555567777787776655 788888888888897 99999764
No 7
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=30.33 E-value=38 Score=25.31 Aligned_cols=37 Identities=16% Similarity=0.321 Sum_probs=21.3
Q ss_pred CcccCCCCCCcccccccccccccCCCCCchhhhhhhcC
Q 030452 32 NTKQNNKNSTSTSSSVGFGIEKMEPLWRCVQGCGACCK 69 (177)
Q Consensus 32 ~~~~~~~~~~~~~~~~gf~~~~~~~~f~C~~~CG~CC~ 69 (177)
..|...|-.++.....+|........-.|. +||.|=.
T Consensus 16 ~~t~~~p~~~~~~~~~~~~g~i~i~~~~Ci-~C~~C~~ 52 (120)
T PRK08348 16 PATNLFPATEPVPVPEDFRGKILYDVDKCV-GCRMCVT 52 (120)
T ss_pred CccccCCccCCCCCCccccceEEECcccCc-CcccHHH
Confidence 344444544333434456555566666895 9999855
No 8
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=26.46 E-value=23 Score=19.81 Aligned_cols=10 Identities=70% Similarity=1.684 Sum_probs=7.4
Q ss_pred CCchhhhhhhc
Q 030452 58 WRCVQGCGACC 68 (177)
Q Consensus 58 f~C~~~CG~CC 68 (177)
-.|. |||+|=
T Consensus 8 ~rCi-GC~~C~ 17 (22)
T PF12797_consen 8 ERCI-GCGACE 17 (22)
T ss_pred cccc-CchhHH
Confidence 4686 999883
No 9
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=21.98 E-value=56 Score=26.56 Aligned_cols=37 Identities=24% Similarity=0.321 Sum_probs=25.1
Q ss_pred CCcccCCCCCCcccccccccccccCCCCCchhhhhhhcCC
Q 030452 31 PNTKQNNKNSTSTSSSVGFGIEKMEPLWRCVQGCGACCKL 70 (177)
Q Consensus 31 ~~~~~~~~~~~~~~~~~gf~~~~~~~~f~C~~~CG~CC~~ 70 (177)
+.|..| |+.. ....-||........-.|. +||.|=..
T Consensus 13 ~~T~~y-P~~~-~~~p~~~rG~~~~d~~~Ci-~Cg~Cv~a 49 (181)
T PRK08222 13 TATVKY-PFAP-LEVSPGFRGKPDLMPSQCI-ACGACTCA 49 (181)
T ss_pred CccccC-CCcc-cCCCCCccCceEeChhhCc-chhHHHHh
Confidence 344444 6654 5677788777777777895 99998653
No 10
>PF06446 Hepcidin: Hepcidin; InterPro: IPR010500 Hepcidin is a antibacterial and anti-fungal protein expressed in the liver and is also a signalling molecule in iron metabolism. The hepcidin protein is cysteine-rich and forms a distorted beta-sheet with an unusual disulphide bond found at the turn of the hairpin [].; GO: 0006879 cellular iron ion homeostasis, 0005576 extracellular region; PDB: 1M4E_A 2KEF_A 1M4F_A 3H0T_C 1S6W_A.
Probab=21.58 E-value=20 Score=24.37 Aligned_cols=7 Identities=71% Similarity=2.399 Sum_probs=4.3
Q ss_pred hhhhhcC
Q 030452 63 GCGACCK 69 (177)
Q Consensus 63 ~CG~CC~ 69 (177)
+||.||+
T Consensus 50 gCG~CC~ 56 (57)
T PF06446_consen 50 GCGVCCR 56 (57)
T ss_dssp SEEEEE-
T ss_pred CCCcccC
Confidence 6677775
Done!