Query 030452
Match_columns 177
No_of_seqs 163 out of 976
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 22:41:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030452.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030452hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mhs_C SAGA-associated factor 27.7 25 0.00086 25.6 1.6 49 16-65 28-77 (99)
2 1r94_A Protein YFHF; tetrameri 11.1 61 0.0021 23.2 0.3 19 48-68 87-105 (118)
3 1s6w_A Hepcidin; two strand an 10.7 48 0.0016 18.5 -0.3 8 63-70 14-21 (26)
4 1m4f_A Hepcidin; strand-loop-s 10.3 46 0.0016 18.5 -0.4 8 63-70 18-25 (26)
5 1x0g_A ISCA; [2Fe-2S], biosynt 8.9 56 0.0019 23.1 -0.6 8 58-67 99-106 (112)
6 1nwb_A Hypothetical protein AQ 8.7 68 0.0023 23.2 -0.2 19 48-68 95-113 (124)
7 2d2a_A SUFA protein; iron-sulf 7.9 87 0.003 23.6 0.1 18 47-66 124-141 (145)
8 2hm3_A Nematocyst outer WALL a 7.7 1.1E+02 0.0038 17.3 0.4 9 59-67 7-16 (31)
9 1iqz_A Ferredoxin; iron-sulfer 6.8 96 0.0033 19.8 -0.1 14 57-71 8-21 (81)
10 2lg4_A Aurelin; antimicrobial 9.4 1E+02 0.0035 18.8 0.0 14 54-67 27-40 (40)
No 1
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=27.75 E-value=25 Score=25.57 Aligned_cols=49 Identities=16% Similarity=0.335 Sum_probs=32.8
Q ss_pred hhhccchhhhhhcCCCCcccCCCCCCccccccccccc-ccCCCCCchhhhh
Q 030452 16 AAQQRPQRRAKKLKKPNTKQNNKNSTSTSSSVGFGIE-KMEPLWRCVQGCG 65 (177)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~-~~~~~f~C~~~CG 65 (177)
.++.+-+.++-..+.|+.+.|.-...+..+..|-... .....|.|. .||
T Consensus 28 v~~e~~~~k~l~~r~p~~k~y~~~~~~~lDIfG~~~~~~~s~~~~C~-nC~ 77 (99)
T 3mhs_C 28 VARETTQQQLLKTRYPDLRSYYFDPNGSLDINGLQKQQESSQYIHCE-NCG 77 (99)
T ss_dssp HHHHHHHHHHHHHHCTTCCCCCCCTTSCSCTTSCCCCCTTSCEEECT-TTC
T ss_pred HHHHHHHHHHHhccCCCCCCceecCCCCcccCCCcCcccCCCeEECC-CCC
Confidence 4444555556677778888777777777777776555 556677885 765
No 2
>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A
Probab=11.12 E-value=61 Score=23.25 Aligned_cols=19 Identities=32% Similarity=0.693 Sum_probs=4.2
Q ss_pred cccccccCCCCCchhhhhhhc
Q 030452 48 GFGIEKMEPLWRCVQGCGACC 68 (177)
Q Consensus 48 gf~~~~~~~~f~C~~~CG~CC 68 (177)
||.-..-...-.| +||.--
T Consensus 87 gF~~~NPna~~~C--gCG~SF 105 (118)
T 1r94_A 87 GFKFTNPNVKDEC--GCGESF 105 (118)
T ss_dssp EEEEECTTCCC----------
T ss_pred ceEEeCCCCCCCC--CCCCCc
Confidence 4433332333568 677644
No 3
>1s6w_A Hepcidin; two strand antiparalell beta sheet, antibiotic; NMR {Synthetic} SCOP: j.3.1.8
Probab=10.67 E-value=48 Score=18.48 Aligned_cols=8 Identities=63% Similarity=2.182 Sum_probs=6.7
Q ss_pred hhhhhcCC
Q 030452 63 GCGACCKL 70 (177)
Q Consensus 63 ~CG~CC~~ 70 (177)
+||.||+.
T Consensus 14 gCG~CC~f 21 (26)
T 1s6w_A 14 GCGVCCRF 21 (26)
T ss_dssp SCEEECCC
T ss_pred eecCcccc
Confidence 59999985
No 4
>1m4f_A Hepcidin; strand-loop-strand, beta-sheet, hairpin loop, antimicrobial protein; NMR {Synthetic} SCOP: j.3.1.8 PDB: 2kef_A 3h0t_C
Probab=10.27 E-value=46 Score=18.53 Aligned_cols=8 Identities=63% Similarity=1.713 Sum_probs=6.3
Q ss_pred hhhhhcCC
Q 030452 63 GCGACCKL 70 (177)
Q Consensus 63 ~CG~CC~~ 70 (177)
+||.||+.
T Consensus 18 ~CG~cC~~ 25 (26)
T 1m4f_A 18 KCGMCCKT 25 (26)
T ss_dssp SEEEECCC
T ss_pred CcCCeeCC
Confidence 78888873
No 5
>1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S cluster, iron, iron-sulfur cluster protein, scaffold, sulfur; 2.50A {Thermosynechococcus elongatus}
Probab=8.92 E-value=56 Score=23.10 Aligned_cols=8 Identities=50% Similarity=1.377 Sum_probs=4.9
Q ss_pred CCchhhhhhh
Q 030452 58 WRCVQGCGAC 67 (177)
Q Consensus 58 f~C~~~CG~C 67 (177)
-.| +||.-
T Consensus 99 ~~C--gCG~S 106 (112)
T 1x0g_A 99 QTC--GCGMA 106 (112)
T ss_dssp EEC--SSSSE
T ss_pred cCC--CCCCc
Confidence 467 67654
No 6
>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} SCOP: b.124.1.1
Probab=8.74 E-value=68 Score=23.23 Aligned_cols=19 Identities=37% Similarity=0.835 Sum_probs=2.8
Q ss_pred cccccccCCCCCchhhhhhhc
Q 030452 48 GFGIEKMEPLWRCVQGCGACC 68 (177)
Q Consensus 48 gf~~~~~~~~f~C~~~CG~CC 68 (177)
||.-......-.| +||.--
T Consensus 95 gF~~~NPna~~~C--gCG~SF 113 (124)
T 1nwb_A 95 GFTIRNPNATGSC--GCGSSF 113 (124)
T ss_dssp EEEEECC--------------
T ss_pred eEEEeCCCCCcCC--CCCCCc
Confidence 5533333333567 676543
No 7
>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli}
Probab=7.95 E-value=87 Score=23.58 Aligned_cols=18 Identities=28% Similarity=0.604 Sum_probs=9.4
Q ss_pred ccccccccCCCCCchhhhhh
Q 030452 47 VGFGIEKMEPLWRCVQGCGA 66 (177)
Q Consensus 47 ~gf~~~~~~~~f~C~~~CG~ 66 (177)
.||.-......-.| +||.
T Consensus 124 ~gF~f~NPna~~~C--GCG~ 141 (145)
T 2d2a_A 124 QIFKFHNPKAQNEC--GCGE 141 (145)
T ss_dssp EEEEEECTTTCSCC--CCBC
T ss_pred ceEEEeCCCCCccc--CCCC
Confidence 35544333334568 7775
No 8
>2hm3_A Nematocyst outer WALL antigen; disulfide, evolution, cysteine rich, structural protein; NMR {Hydra vulgaris} PDB: 2hm4_A 2hm5_A 2hm6_A
Probab=7.67 E-value=1.1e+02 Score=17.29 Aligned_cols=9 Identities=56% Similarity=1.686 Sum_probs=5.5
Q ss_pred Cchhhh-hhh
Q 030452 59 RCVQGC-GAC 67 (177)
Q Consensus 59 ~C~~~C-G~C 67 (177)
.|+.+| |.|
T Consensus 7 tcpsgcsgdc 16 (31)
T 2hm3_A 7 TCPSGCSGDC 16 (31)
T ss_dssp CCCTTCCGGG
T ss_pred cCCCCcCccc
Confidence 566666 555
No 9
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*
Probab=6.85 E-value=96 Score=19.79 Aligned_cols=14 Identities=36% Similarity=0.871 Sum_probs=9.7
Q ss_pred CCCchhhhhhhcCCC
Q 030452 57 LWRCVQGCGACCKLD 71 (177)
Q Consensus 57 ~f~C~~~CG~CC~~~ 71 (177)
.-.|. +||.|=..-
T Consensus 8 ~~~Ci-gCg~C~~~C 21 (81)
T 1iqz_A 8 KETCI-ACGACGAAA 21 (81)
T ss_dssp TTTCC-CCSHHHHHC
T ss_pred cccCc-ccChhhHhC
Confidence 34795 999986643
No 10
>2lg4_A Aurelin; antimicrobial protein; NMR {Aurelia aurita}
Probab=9.38 E-value=1e+02 Score=18.81 Aligned_cols=14 Identities=29% Similarity=0.800 Sum_probs=10.6
Q ss_pred cCCCCCchhhhhhh
Q 030452 54 MEPLWRCVQGCGAC 67 (177)
Q Consensus 54 ~~~~f~C~~~CG~C 67 (177)
...+..|.+.||.|
T Consensus 27 ~~~r~~C~kTCG~C 40 (40)
T 2lg4_A 27 VKLRANCKKTCGLC 40 (40)
Confidence 34567898899987
Done!