Query 030452
Match_columns 177
No_of_seqs 163 out of 976
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 22:42:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030452.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030452hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dlqa2 g.37.1.1 (A:35-62) GLI 34.4 4.7 0.00035 21.3 0.3 11 57-68 1-11 (28)
2 d1nekb1 a.1.2.1 (B:107-238) Su 12.0 57 0.0042 21.7 2.3 15 54-69 37-51 (132)
3 d1rk8c_ b.72.3.1 (C:) Pym (Wit 11.0 12 0.00088 20.5 -1.4 18 12-29 8-28 (33)
4 d2c42a5 d.58.1.5 (A:669-785) P 11.0 25 0.0018 23.1 -0.0 14 56-70 73-86 (117)
5 d2dmda3 g.37.1.1 (A:62-90) Zin 10.7 35 0.0025 17.9 0.5 12 117-128 1-12 (29)
6 d1iqza_ d.58.1.4 (A:) Ferredox 8.4 34 0.0025 21.2 -0.1 14 57-71 8-21 (81)
7 d1bhia_ g.37.1.1 (A:) Transact 8.4 54 0.004 18.4 0.8 12 116-127 3-14 (38)
8 d1fxda_ d.58.1.4 (A:) Ferredox 7.8 37 0.0027 19.6 -0.1 13 59-72 7-19 (58)
9 d2bs2b1 a.1.2.1 (B:107-239) Fu 7.4 35 0.0025 22.7 -0.5 11 56-67 98-108 (133)
10 d3c7bb1 d.58.1.5 (B:197-261) D 7.1 42 0.0031 20.3 -0.1 12 57-69 42-53 (65)
No 1
>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.42 E-value=4.7 Score=21.33 Aligned_cols=11 Identities=36% Similarity=1.180 Sum_probs=8.6
Q ss_pred CCCchhhhhhhc
Q 030452 57 LWRCVQGCGACC 68 (177)
Q Consensus 57 ~f~C~~~CG~CC 68 (177)
+|.|. .||.|=
T Consensus 1 pf~c~-kcgkcy 11 (28)
T d2dlqa2 1 PFECP-KCGKCY 11 (28)
T ss_dssp SCBCT-TTCCBC
T ss_pred CCccc-cchhhh
Confidence 47895 999885
No 2
>d1nekb1 a.1.2.1 (B:107-238) Succinate dehydogenase {Escherichia coli [TaxId: 562]}
Probab=12.04 E-value=57 Score=21.65 Aligned_cols=15 Identities=27% Similarity=1.039 Sum_probs=10.9
Q ss_pred cCCCCCchhhhhhhcC
Q 030452 54 MEPLWRCVQGCGACCK 69 (177)
Q Consensus 54 ~~~~f~C~~~CG~CC~ 69 (177)
......|. .||.|=.
T Consensus 37 ~~~~~~CI-~CG~C~~ 51 (132)
T d1nekb1 37 LDGLYECI-LCACCST 51 (132)
T ss_dssp TTTTSCCC-CCCHHHH
T ss_pred HHhhHHHh-Hhhhhhh
Confidence 34567997 9999853
No 3
>d1rk8c_ b.72.3.1 (C:) Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=11.00 E-value=12 Score=20.53 Aligned_cols=18 Identities=33% Similarity=0.698 Sum_probs=13.6
Q ss_pred hhhhhhhccch---hhhhhcC
Q 030452 12 TVVLAAQQRPQ---RRAKKLK 29 (177)
Q Consensus 12 ~~~~~~~~~~~---~~~~~~~ 29 (177)
-..|+|.|||- +|+.+||
T Consensus 8 G~~i~atqRpDGtWRK~rrvk 28 (33)
T d1rk8c_ 8 GKFIPATKRPDGTWRKARRVK 28 (33)
T ss_dssp EEEECCEECTTSCEECCEECC
T ss_pred CcEeccccCCCCccccceecc
Confidence 45789999997 6666666
No 4
>d2c42a5 d.58.1.5 (A:669-785) Pyruvate-ferredoxin oxidoreductase, PFOR, domain V {Desulfovibrio africanus [TaxId: 873]}
Probab=10.97 E-value=25 Score=23.15 Aligned_cols=14 Identities=36% Similarity=1.179 Sum_probs=10.1
Q ss_pred CCCCchhhhhhhcCC
Q 030452 56 PLWRCVQGCGACCKL 70 (177)
Q Consensus 56 ~~f~C~~~CG~CC~~ 70 (177)
....|. +||+|=.-
T Consensus 73 ~~~~C~-~CG~C~~~ 86 (117)
T d2c42a5 73 NTLDCM-GCGNCADI 86 (117)
T ss_dssp CTTTCC-CCCHHHHH
T ss_pred ccccCC-ccCchhhh
Confidence 345796 99999653
No 5
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.69 E-value=35 Score=17.91 Aligned_cols=12 Identities=42% Similarity=1.007 Sum_probs=9.5
Q ss_pred CCCccccccchh
Q 030452 117 ERPYFCRVEPAV 128 (177)
Q Consensus 117 ~RP~~CR~yPf~ 128 (177)
.||+.|.+-++.
T Consensus 1 erpfkcqlcsy~ 12 (29)
T d2dmda3 1 ERPFKCQICPYA 12 (29)
T ss_dssp CCCEECSSSSCE
T ss_pred CCcceeeecccc
Confidence 389999998754
No 6
>d1iqza_ d.58.1.4 (A:) Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1427]}
Probab=8.44 E-value=34 Score=21.18 Aligned_cols=14 Identities=36% Similarity=0.871 Sum_probs=10.3
Q ss_pred CCCchhhhhhhcCCC
Q 030452 57 LWRCVQGCGACCKLD 71 (177)
Q Consensus 57 ~f~C~~~CG~CC~~~ 71 (177)
+-.|. +||.|=...
T Consensus 8 ~~~Ci-gCg~C~~~c 21 (81)
T d1iqza_ 8 KETCI-ACGACGAAA 21 (81)
T ss_dssp TTTCC-CCSHHHHHC
T ss_pred HHHCc-CcChHhHhC
Confidence 45796 999997643
No 7
>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.38 E-value=54 Score=18.36 Aligned_cols=12 Identities=17% Similarity=0.811 Sum_probs=9.8
Q ss_pred CCCCccccccch
Q 030452 116 PERPYFCRVEPA 127 (177)
Q Consensus 116 e~RP~~CR~yPf 127 (177)
+.||++|...+.
T Consensus 3 ddkPF~C~~pGC 14 (38)
T d1bhia_ 3 DDKPFLCTAPGC 14 (38)
T ss_dssp TCCCEECCCTTT
T ss_pred CCCceecCCCCc
Confidence 579999999763
No 8
>d1fxda_ d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [TaxId: 879]}
Probab=7.84 E-value=37 Score=19.64 Aligned_cols=13 Identities=31% Similarity=0.976 Sum_probs=9.5
Q ss_pred CchhhhhhhcCCCC
Q 030452 59 RCVQGCGACCKLDK 72 (177)
Q Consensus 59 ~C~~~CG~CC~~~~ 72 (177)
.|. +||.|=..-+
T Consensus 7 ~Ci-gCg~C~~~CP 19 (58)
T d1fxda_ 7 DCM-ACEACVEICP 19 (58)
T ss_dssp TCC-CCCHHHHHCT
T ss_pred cCc-ChhhHHHHcC
Confidence 586 9999977543
No 9
>d2bs2b1 a.1.2.1 (B:107-239) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}
Probab=7.41 E-value=35 Score=22.75 Aligned_cols=11 Identities=27% Similarity=0.691 Sum_probs=9.1
Q ss_pred CCCCchhhhhhh
Q 030452 56 PLWRCVQGCGAC 67 (177)
Q Consensus 56 ~~f~C~~~CG~C 67 (177)
..|.|+ +||.|
T Consensus 98 ~~~~Ct-~Cg~C 108 (133)
T d2bs2b1 98 GVFGCM-TLLAC 108 (133)
T ss_dssp TGGGCC-CCCHH
T ss_pred cchhCh-hhCCC
Confidence 457896 99999
No 10
>d3c7bb1 d.58.1.5 (B:197-261) DsrB insert domain {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=7.15 E-value=42 Score=20.28 Aligned_cols=12 Identities=33% Similarity=1.060 Sum_probs=8.9
Q ss_pred CCCchhhhhhhcC
Q 030452 57 LWRCVQGCGACCK 69 (177)
Q Consensus 57 ~f~C~~~CG~CC~ 69 (177)
.-.|. +||.|=.
T Consensus 42 ~~~Ci-gCg~C~~ 53 (65)
T d3c7bb1 42 VEKCM-YCGNCYT 53 (65)
T ss_dssp TTTCC-CCCHHHH
T ss_pred CCcCc-ccChhhh
Confidence 34796 9999954
Done!