BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030453
(177 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M015|Y5161_ARATH Uncharacterized protein At5g01610 OS=Arabidopsis thaliana
GN=At5g01610 PE=1 SV=1
Length = 170
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 8/125 (6%)
Query: 25 QESIYEILKEHGLPMGLLPKGIDEFSID-GTGNFEVFLEQACNAKFE--SELHYDRNVSG 81
Q+ + E+LKE+ LP+G+ P + D T V + C ++ S L + V+G
Sbjct: 51 QKPLPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTG 110
Query: 82 TLSYGQMGSLSGISAQELFLWFPVKGIRVDIPSSGLIYFDVGVVRKQFSLSLFETPRDCM 141
L G++ + GI + + +W V I D + +YF G ++K S +E R+ +
Sbjct: 111 HLEKGKLTDVEGIKTK-VMIWVKVTSISTD---ASKVYFTAG-MKKSRSRDAYEVQRNGL 165
Query: 142 AVRSY 146
V +
Sbjct: 166 RVDKF 170
>sp|P94417|AK3_BACSU Aspartokinase 3 OS=Bacillus subtilis (strain 168) GN=yclM PE=1 SV=1
Length = 454
Score = 33.5 bits (75), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 30 EILKEHGLPMGLLPKGIDEFSID-GTGNFEVFLEQACNAKFESELHYD 76
+IL+EHGL +P GID+ +I G + E++ + E +LH D
Sbjct: 329 QILEEHGLTYEHVPSGIDDMTIILRQGQMDAATERSVIKRIEEDLHAD 376
>sp|Q9BXT8|RNF17_HUMAN RING finger protein 17 OS=Homo sapiens GN=RNF17 PE=1 SV=3
Length = 1623
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 21/120 (17%)
Query: 11 LSFLTLSISNVNSKQESIYEILKEHGLPMGLLPKGIDEF--SIDGTGNFEVFL---EQAC 65
++ +++++ ++NS + ++++ GL + L K I+EF S DG N E+ +QAC
Sbjct: 677 MTDVSVTVCHINSPGDFYLQLIE--GLDILFLLKTIEEFYKSEDGE-NLEILCPVQDQAC 733
Query: 66 NAKFESELHYDRNVSG-------TLSYGQMGSLSGISAQEL------FLWFPVKGIRVDI 112
AKFE + Y V G + Y G+ + I+ +++ FL P K I+ +
Sbjct: 734 VAKFEDGIWYRAKVIGLPGHQEVEVKYVDFGNTAKITIKDVRKIKDEFLNAPEKAIKCKL 793
>sp|A4SNE3|MNMC_AERS4 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Aeromonas salmonicida (strain A449)
GN=mnmC PE=3 SV=1
Length = 672
Score = 31.6 bits (70), Expect = 2.5, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 13 FLTLSISNVNSKQESIYEILKEHGLPMGLLPKGIDEFSIDGTG-----NF----EVFLEQ 63
F + SN N E+ Y L+++GLP D F I TG NF + FLEQ
Sbjct: 31 FGDVYFSNDNGLSETRYVFLQQNGLPARFSHHNSDSFVIGETGFGTGLNFLATMKAFLEQ 90
Query: 64 ACNAKFESELHY 75
A + LH+
Sbjct: 91 APQTGNGARLHF 102
>sp|Q4R3G4|RNF17_MACFA RING finger protein 17 OS=Macaca fascicularis GN=RNF17 PE=2 SV=2
Length = 1534
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 19/119 (15%)
Query: 11 LSFLTLSISNVNSKQESIYEILKEHGLPMGLLPKGIDEFSIDGTG-NFEVFL---EQACN 66
++ +++++ ++NS + ++++ GL L K I+EF + G N E+ +Q C
Sbjct: 588 MTDVSVTVCHINSPGDFYLQLIE--GLDFLFLLKTIEEFYKNEAGENLEILCPVQDQVCV 645
Query: 67 AKFESELHYDRNVSG-------TLSYGQMGSLSGISAQEL------FLWFPVKGIRVDI 112
AKFE + Y V G + Y G+ + I+ +++ FL P K I+ +
Sbjct: 646 AKFEDGIWYRAKVIGLPGHQEVEVKYVDFGNTAKITIKDVRKIKDEFLTAPEKAIKCKL 704
>sp|Q8RWB8|UPL6_ARATH E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana GN=UPL6
PE=2 SV=1
Length = 1029
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 18/82 (21%)
Query: 45 GIDEFSIDGTGNFEVFLEQACNAKFESELHYDRNVSGTLSYGQMGS-------------L 91
G++E IDG G F+ F+E+ A F+ + + + + Y GS L
Sbjct: 705 GVEEAGIDGGGIFKDFMEKITRAAFDVQYGLFKETADHMLYPNPGSGMIHEQHLQFFHFL 764
Query: 92 SGISAQELFLWFPVKGIRVDIP 113
+ A+ +F +GI VDIP
Sbjct: 765 GSLLAKAMF-----EGILVDIP 781
>sp|B7GHS8|CCA_ANOFW CCA-adding enzyme OS=Anoxybacillus flavithermus (strain DSM 21510 /
WK1) GN=cca PE=3 SV=1
Length = 397
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Query: 86 GQMGSLSGISAQELFLWFPVKGIRVDIPSSGL------IYFDVGVVRKQFSLSLFETPRD 139
G + + QE+ FP + + V I + I ++V RK+ + P+D
Sbjct: 39 GDIDIATSAHPQEVMAIFP-RTVPVGIAHGTVMVIERGISYEVTTFRKEGRYEDYRRPKD 97
Query: 140 CMAVRSYNDDVLNGELSAEALYKRKYG 166
VRS N+D+ + + A+ +YG
Sbjct: 98 VTFVRSLNEDLQRRDFTMNAIAMNEYG 124
>sp|Q765N2|FAS2_LACKL Fatty acid synthase subunit alpha OS=Lachancea kluyveri GN=FAS2 PE=3
SV=1
Length = 1888
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 23 SKQESIYEILKEHGLPMGLLPKGIDEFSIDGTGNFEVFLEQACNAKFESELHYDRNVSGT 82
+ +E+ + EHG +D F I TG F V L + L +DR V+G
Sbjct: 1136 ASKETAEQFKHEHG-------DKVDIFEIPETGEFSVRLLKGATLYIPKALRFDRLVAGQ 1188
Query: 83 LSYGQMGSLSGIS 95
+ G GIS
Sbjct: 1189 IPTGWNAKTYGIS 1201
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.139 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,891,895
Number of Sequences: 539616
Number of extensions: 2753976
Number of successful extensions: 6195
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 6194
Number of HSP's gapped (non-prelim): 10
length of query: 177
length of database: 191,569,459
effective HSP length: 110
effective length of query: 67
effective length of database: 132,211,699
effective search space: 8858183833
effective search space used: 8858183833
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)