BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030454
         (177 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3KLR|A Chain A, Bovine H-Protein At 0.88 Angstrom Resolution
          Length = 125

 Score = 32.0 bits (71), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 12/85 (14%)

Query: 30  LNKQQPQIGPDPICNPARFKTSGSSYSPLNDPSPNWSNRPPKET--IMLDGCDYQHWLIV 87
           LNKQ+     + +      K +   YSPL+       N+   E   ++   C    WLI 
Sbjct: 46  LNKQEEFGALESV------KAASELYSPLSGEVTEI-NKALAENPGLVNKSCYEDGWLIK 98

Query: 88  MEFPNPSELSE---EEMINAYVKTL 109
           M F NPSEL E   EE    Y+K++
Sbjct: 99  MTFSNPSELDELMSEEAYEKYIKSI 123


>pdb|3Q8D|A Chain A, E. Coli Reco Complex With Ssb C-terminus
 pdb|3Q8D|B Chain B, E. Coli Reco Complex With Ssb C-terminus
          Length = 242

 Score = 29.6 bits (65), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 14/81 (17%)

Query: 106 VKTLAAVVGSEEEAKKKI---------YSVCTTTYTGFGALIDEELSYKVKGQPGVLWVL 156
           +++LA V G+ E A ++          Y V  T   G G  +D+ ++Y+ + + G +   
Sbjct: 117 IQSLAGVTGTPEPALRRFELALLGHLGYGVNFTHCAGSGEPVDDTMTYRYREEKGFI--- 173

Query: 157 PDSYIDVPNKDYGGRYFLKLN 177
             + + + NK + GR    LN
Sbjct: 174 --ASVVIDNKTFTGRQLKALN 192


>pdb|2EDG|A Chain A, Solution Structure Of The Gcv_h Domain From Mouse Glycine
          Length = 130

 Score = 28.1 bits (61), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)

Query: 79  CDYQHWLIVMEFPNPSELSE---EEMINAYVKTL 109
           C    WLI M   +PSEL E   EE    YVK++
Sbjct: 95  CYEDGWLIKMTLSDPSELDELMSEEAYEKYVKSI 128


>pdb|3RCN|A Chain A, Crystal Structure Of Beta-N-Acetylhexosaminidase From
           Arthrobacter Aurescens
          Length = 543

 Score = 28.1 bits (61), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 46  ARFKTSGSSYSPLNDPSPNWSNRPPKE 72
           AR +  G  Y PL+ P+P W  RP  E
Sbjct: 504 ARLEAXGVEYRPLSGPAP-WQQRPGVE 529


>pdb|1QFX|A Chain A, Ph 2.5 Acid Phosphatase From Aspergillus Niger
 pdb|1QFX|B Chain B, Ph 2.5 Acid Phosphatase From Aspergillus Niger
          Length = 460

 Score = 26.9 bits (58), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 9/63 (14%)

Query: 117 EEAKKKIYSVCTTTYTGFGALIDE-------ELSYKVKGQPGVLWVLPDSYIDVPNKDYG 169
           EEA  K+YS+ TT Y G  A +++       E  Y  +   G    L D+Y      DY 
Sbjct: 77  EEALAKVYSINTTEYKGDLAFLNDWTYYVPNECYYNAETTSGPYAGLLDAYNH--GNDYK 134

Query: 170 GRY 172
            RY
Sbjct: 135 ARY 137


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.134    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,944,303
Number of Sequences: 62578
Number of extensions: 256819
Number of successful extensions: 464
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 462
Number of HSP's gapped (non-prelim): 10
length of query: 177
length of database: 14,973,337
effective HSP length: 92
effective length of query: 85
effective length of database: 9,216,161
effective search space: 783373685
effective search space used: 783373685
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)