BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030454
         (177 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9LKA5|UMP1_ARATH Uncharacterized protein At3g15000, mitochondrial OS=Arabidopsis
           thaliana GN=At3g15000 PE=1 SV=1
          Length = 395

 Score =  162 bits (411), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 75/119 (63%), Positives = 96/119 (80%), Gaps = 1/119 (0%)

Query: 56  SPLNDPSPNWSNRPPKETIMLDGCDYQHWLIVMEFPNPSELSEEEMINAYVKTLAAVVGS 115
           S LNDP+PNWSNRPPKETI+LDGCD++HWL+V+E P   E + +E+I++Y+KTLA +VGS
Sbjct: 72  SSLNDPNPNWSNRPPKETILLDGCDFEHWLVVVEPPQ-GEPTRDEIIDSYIKTLAQIVGS 130

Query: 116 EEEAKKKIYSVCTTTYTGFGALIDEELSYKVKGQPGVLWVLPDSYIDVPNKDYGGRYFL 174
           E+EA+ KIYSV T  Y  FGAL+ E+LS+K+K    V WVLPDSY+DV NKDYGG  F+
Sbjct: 131 EDEARMKIYSVSTRCYYAFGALVSEDLSHKLKELSNVRWVLPDSYLDVRNKDYGGEPFI 189


>sp|Q38732|DAG_ANTMA DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1
          Length = 230

 Score =  141 bits (356), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/102 (64%), Positives = 76/102 (74%)

Query: 73  TIMLDGCDYQHWLIVMEFPNPSELSEEEMINAYVKTLAAVVGSEEEAKKKIYSVCTTTYT 132
           TIML GCDY HWLIVMEFP     + E+MI+ Y+ TLA V+GS EEAKK +Y+  TTTYT
Sbjct: 78  TIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYT 137

Query: 133 GFGALIDEELSYKVKGQPGVLWVLPDSYIDVPNKDYGGRYFL 174
           GF   + EE S K KG PGVLWVLPDSYIDV NKDYGG  ++
Sbjct: 138 GFQCTVTEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYV 179


>sp|P20821|GCSH_BOVIN Glycine cleavage system H protein, mitochondrial OS=Bos taurus
           GN=GCSH PE=1 SV=1
          Length = 173

 Score = 32.0 bits (71), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 12/85 (14%)

Query: 30  LNKQQPQIGPDPICNPARFKTSGSSYSPLNDPSPNWSNRPPKET--IMLDGCDYQHWLIV 87
           LNKQ+     + +      K +   YSPL+       N+   E   ++   C    WLI 
Sbjct: 94  LNKQEEFGALESV------KAASELYSPLSGEVTE-INKALAENPGLVNKSCYEDGWLIK 146

Query: 88  MEFPNPSELSE---EEMINAYVKTL 109
           M F NPSEL E   EE    Y+K++
Sbjct: 147 MTFSNPSELDELMSEEAYEKYIKSI 171


>sp|Q9BWT7|CAR10_HUMAN Caspase recruitment domain-containing protein 10 OS=Homo sapiens
           GN=CARD10 PE=2 SV=2
          Length = 1032

 Score = 30.4 bits (67), Expect = 6.3,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 139 DEELSYKVKGQPGVLWVLPDSYIDVPNKDYG 169
           D EL  + +G   VLW LP S++ VP  ++G
Sbjct: 965 DSELLRQCRGSEQVLWGLPCSWVQVPAHEWG 995


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.134    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,289,412
Number of Sequences: 539616
Number of extensions: 3280761
Number of successful extensions: 6755
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 6748
Number of HSP's gapped (non-prelim): 25
length of query: 177
length of database: 191,569,459
effective HSP length: 110
effective length of query: 67
effective length of database: 132,211,699
effective search space: 8858183833
effective search space used: 8858183833
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)