BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030455
(177 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y535|RPC8_HUMAN DNA-directed RNA polymerase III subunit RPC8 OS=Homo sapiens
GN=POLR3H PE=1 SV=1
Length = 204
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 102/206 (49%), Gaps = 34/206 (16%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDK---------------EIEGGFVY 45
MF L ++ T+R+PP LN++I EL +K ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 46 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 105
PG+GAS V FR VVF PF+ EI+ K+K G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK- 119
Query: 106 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIP------IEQA 151
+ E W+WE+ G +D +EI+FRV+ ++ P+ P
Sbjct: 120 ----FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADATTSSE 175
Query: 152 EGSKPFAPMVINGSIDYDGLGPVSWW 177
E K AP + GSI GLG +SWW
Sbjct: 176 ELPKKEAPYTLVGSISEPGLGLLSWW 201
>sp|Q9D2C6|RPC8_MOUSE DNA-directed RNA polymerase III subunit RPC8 OS=Mus musculus
GN=Polr3h PE=2 SV=2
Length = 204
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 102/206 (49%), Gaps = 34/206 (16%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDK---------------EIEGGFVY 45
MF L ++ T+R+PP LN++I EL +K ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 46 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 105
PG+GAS V FR VVF PF+ EI+ K+K G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK- 119
Query: 106 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGS--- 154
+ E W+WE+ G +D +EI+FRV+ ++ P+ P S
Sbjct: 120 ----FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEAASSSE 175
Query: 155 ---KPFAPMVINGSIDYDGLGPVSWW 177
K AP + GSI GLG +SWW
Sbjct: 176 ELPKKEAPYTLVGSISEPGLGLLSWW 201
>sp|Q2T9X1|RPC8_BOVIN DNA-directed RNA polymerase III subunit RPC8 OS=Bos taurus
GN=POLR3H PE=2 SV=1
Length = 204
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 102/206 (49%), Gaps = 34/206 (16%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDK---------------EIEGGFVY 45
MF L ++ T+R+PP LN++I EL +K ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIDEELNKKLANKVMYNVGLCICLFDITKLEDAYVF 60
Query: 46 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 105
PG+GAS V FR VVF PF+ EI+ K+K G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK- 119
Query: 106 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGS--- 154
+ E W+WE+ G +D +E++FRV+ ++ P+ P S
Sbjct: 120 ----FDEAEQVWVWEYETEEGAHDLYMDIGEEVRFRVVDESFVDTSPTGPSSAEAASSSE 175
Query: 155 ---KPFAPMVINGSIDYDGLGPVSWW 177
K AP + GSI GLG +SWW
Sbjct: 176 ELPKKEAPYTLMGSISEPGLGLLSWW 201
>sp|O94285|RPC8_SCHPO DNA-directed RNA polymerase III subunit rpc8 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpc25 PE=1 SV=1
Length = 203
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 95/207 (45%), Gaps = 35/207 (16%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKEIEG---------------GFVY 45
MF LS+ + + P P EA+ E+ + +K I+ G +
Sbjct: 1 MFLLSRFSDIISIHPSNFWKPTKEALAEEIHKKYANKVIQNIGLAICVYDFLKIGEGIIK 60
Query: 46 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 105
G+G+S V FRL++FRPF GE++ K+K G+R+++ FF+DI++P +L P
Sbjct: 61 YGDGSSYMNVVFRLIIFRPFRGEVMLGKIKSCSEEGIRVTISFFDDIFIPKDMLFDPCVF 120
Query: 106 EPDPYGRYEVKWIWEF------GDTKYVIDGLDEIKFRVLSVNYPSI---------PIEQ 150
PD E W+W+ T+ D +EI+F++ S ++ I I
Sbjct: 121 RPD-----ERAWVWKIEGEDGSEGTELYFDIDEEIRFQIESEDFVDISPKRNKNATAITG 175
Query: 151 AEGSKPFAPMVINGSIDYDGLGPVSWW 177
E + +P + S DGLG +WW
Sbjct: 176 TEALESVSPYTLIASCSRDGLGIPAWW 202
>sp|P35718|RPC8_YEAST DNA-directed RNA polymerase III subunit RPC8 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPC25 PE=1
SV=1
Length = 212
Score = 90.5 bits (223), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 99/216 (45%), Gaps = 44/216 (20%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDK---------------EIEGGFVY 45
MF LSKI +R+PP AI +L N F +K +E G +
Sbjct: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60
Query: 46 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLS-LGFFEDIYVPSHLLPSPSR 104
PG+G+S V FR VVF+PF+GEI+ + + A G+++S LG F+DI++P ++L
Sbjct: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCY 120
Query: 105 SEPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNY----PSIPIE---------- 149
P+ E WIW +TK D ++I+FR+ + P P E
Sbjct: 121 YTPE-----ESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDVKPKSPKERELEERAQLE 175
Query: 150 -QAEGSKPFAPM-------VINGSIDYDGLGPVSWW 177
+ EG P + GS DG+G VSWW
Sbjct: 176 NEIEGKNEETPQNEKPPAYALLGSCQTDGMGLVSWW 211
>sp|Q557J3|RPC8_DICDI DNA-directed RNA polymerase III subunit rpc8 OS=Dictyostelium
discoideum GN=polr3h-1 PE=2 SV=1
Length = 252
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 100/220 (45%), Gaps = 49/220 (22%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDK------------EIEG---GFVY 45
MF+L IE +R+ P + + I+ E+E + K +I G +V+
Sbjct: 1 MFHLITIEDKVRIAPSQFNNEV-QTIEDEIEKKYTSKVVLNAGLFVALYDILGTGDSYVH 59
Query: 46 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 105
G+G + V+FR+VVF+PF GE++ +K+S +++SLGFF +IY+ LP+PS
Sbjct: 60 SGDGGAHLMVRFRMVVFKPFKGEVLEGVIKKSSRQSIQISLGFFHEIYLNPIELPNPSN- 118
Query: 106 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY--------PSIPIEQAEGSKPF 157
Y + E W WE+ + + + ++F++ V + PS E +
Sbjct: 119 ----YNQEEGLWYWEWNENQLFFEDGGRVRFKIDQVEFNPEISQPAPSPKNVNTEAMDSY 174
Query: 158 A--------------------PMVINGSIDYDGLGPVSWW 177
+ P+++ S+ GLG VSWW
Sbjct: 175 SLREYKEKQIENENLLKQVKSPLILKVSMREAGLGMVSWW 214
>sp|P62489|RPB7_RAT DNA-directed RNA polymerase II subunit RPB7 OS=Rattus norvegicus
GN=Polr2g PE=2 SV=1
Length = 172
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 21/154 (13%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIK----LELENVFLDK-----------EIEGGFVY 45
MFY +EH + L P L +K E+E K I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 46 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 105
PG G + VK++ +VFRPF GE++ A + + + GL +G ++ H +PS
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHSIPSEMEF 119
Query: 106 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 139
+P+ ++ D VI DEI+ +++
Sbjct: 120 DPNSN-----PPCYKTMDEDIVIQQDDEIRLKIV 148
>sp|P62488|RPB7_MOUSE DNA-directed RNA polymerase II subunit RPB7 OS=Mus musculus
GN=Polr2g PE=2 SV=1
Length = 172
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 21/154 (13%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIK----LELENVFLDK-----------EIEGGFVY 45
MFY +EH + L P L +K E+E K I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 46 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 105
PG G + VK++ +VFRPF GE++ A + + + GL +G ++ H +PS
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHSIPSEMEF 119
Query: 106 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 139
+P+ ++ D VI DEI+ +++
Sbjct: 120 DPNSN-----PPCYKTMDEDIVIQQDDEIRLKIV 148
>sp|P62487|RPB7_HUMAN DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens
GN=POLR2G PE=1 SV=1
Length = 172
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 21/154 (13%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIK----LELENVFLDK-----------EIEGGFVY 45
MFY +EH + L P L +K E+E K I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 46 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 105
PG G + VK++ +VFRPF GE++ A + + + GL +G ++ H +PS
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHSIPSEMEF 119
Query: 106 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 139
+P+ ++ D VI DEI+ +++
Sbjct: 120 DPNSN-----PPCYKTMDEDIVIQQDDEIRLKIV 148
>sp|Q5E9B8|RPB7_BOVIN DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus GN=POLR2G
PE=2 SV=1
Length = 172
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 21/154 (13%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIK----LELENVFLDK-----------EIEGGFVY 45
MFY +EH + L P L +K E+E K I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 46 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 105
PG G + VK++ +VFRPF GE++ A + + + GL +G ++ H +PS
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHSIPSEMEF 119
Query: 106 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 139
+P+ ++ D VI DEI+ +++
Sbjct: 120 DPNSN-----PPCYKTMDEDIVIQQDDEIRLKIV 148
>sp|Q7ZW41|RPB7_DANRE DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio
GN=polr2g PE=2 SV=1
Length = 172
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 21/154 (13%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIK----LELENVFLDK-----------EIEGGFVY 45
MFY +EH + L P L +K E+E K I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 46 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 105
PG G + VK++ +VFRPF GE++ A + + + GL +G ++ H +PS
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHSIPSEMEF 119
Query: 106 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 139
+P+ ++ D VI DEI+ +++
Sbjct: 120 DPNSN-----PPCYKTVDEDVVIQQDDEIRLKIV 148
>sp|O14459|RPB7_SCHPO DNA-directed RNA polymerase II subunit rpb7 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb7 PE=1 SV=1
Length = 172
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 38 EIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSH 97
+I+ G V PG+G + VK+R V++RPF GE++ A + + G ++G +++V SH
Sbjct: 56 DIDKGRVVPGQGFAEFEVKYRAVLWRPFRGEVVDAIVTTVNKMGFFANIGPL-NVFVSSH 114
Query: 98 LLPSPSRSEP 107
L+P + +P
Sbjct: 115 LVPPDMKFDP 124
>sp|P34087|RPB7_YEAST DNA-directed RNA polymerase II subunit RPB7 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPB7 PE=1
SV=1
Length = 171
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 28 LELENVFLDKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 87
L+ +N+ +I+ G + P +G++ VK+R VVF+PF GE++ + +G + +G
Sbjct: 49 LDYDNI----DIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVG 104
Query: 88 FFEDIYVPSHLLPS 101
+ ++V HL+P
Sbjct: 105 PMK-VFVTKHLMPQ 117
>sp|P39466|RPOE_SULAC DNA-directed RNA polymerase subunit E OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoE PE=1 SV=2
Length = 183
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 17/103 (16%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNE-AIKLELENVFLDKEI---------------EGGFV 44
MF L + + +R+PP ++E AIK+ L + +K I E GF+
Sbjct: 1 MFKLVRAKGIVRIPPEYFGQSVDEIAIKI-LRQEYQEKLIKDIGVVLGIVNAKASEEGFI 59
Query: 45 YPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 87
G+GA+ H V+F ++V+ P + E+I ++ + D G+ +++G
Sbjct: 60 IFGDGATYHEVEFDMLVYTPIIHEVIEGEVSQVDNYGVYVNMG 102
>sp|P38421|RPB7_ARATH DNA-directed RNA polymerase II subunit RPB7 OS=Arabidopsis thaliana
GN=RPB19 PE=1 SV=1
Length = 176
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 36/125 (28%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKEIEG------------------- 41
MF+ +E ++L P L E + +L K++EG
Sbjct: 1 MFFHIVLERNMQLHPRFFGRNLKENLVSKLM-----KDVEGTCSGRHGFVVAITGIDTIG 55
Query: 42 -GFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVP 95
G + G G T VK++ VVFRPF GEI+ A + L +GFF + I+V
Sbjct: 56 KGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVT------LVNKMGFFAEAGPVQIFVS 109
Query: 96 SHLLP 100
HL+P
Sbjct: 110 KHLIP 114
>sp|P46279|RPB7_SOYBN DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max PE=2
SV=1
Length = 176
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 11/69 (15%)
Query: 37 KEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED----- 91
+ I G + G G T VK++ VVFRPF GEI+ A + + +GFF +
Sbjct: 52 ENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVN------KMGFFAEAGPVQ 105
Query: 92 IYVPSHLLP 100
I+V +HL+P
Sbjct: 106 IFVSNHLIP 114
>sp|Q54P04|RPB7_DICDI DNA-directed RNA polymerase II subunit rpb7 OS=Dictyostelium
discoideum GN=polr2g PE=3 SV=1
Length = 172
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 11/65 (16%)
Query: 42 GFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPS 96
G V G VK++ ++F+PF GE++ A + + +LGFF + I+V +
Sbjct: 57 GKVLESSGYVVFNVKYKAIIFKPFKGEVLDAIVTKVT------NLGFFAEAGPLSIFVST 110
Query: 97 HLLPS 101
L+PS
Sbjct: 111 QLIPS 115
>sp|P33075|KAD1_SCHPO Adenylate kinase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=adk1 PE=3 SV=1
Length = 220
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 18 LRLPLNEAIKLELENVFLDKEIEGGFVYPGEGASTH 53
L+L LN ++L++++ L + I G V+PG G S H
Sbjct: 107 LKLDLNTVLELQVDDELLVRRITGRLVHPGSGRSYH 142
>sp|A5DC72|KAD1_PICGU Adenylate kinase 1 OS=Meyerozyma guilliermondii (strain ATCC 6260 /
CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324)
GN=ADK1 PE=3 SV=1
Length = 247
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 19 RLPLNEAIKLELENVFLDKEIEGGFVYPGEGASTHTV 55
+ PL +A++L++E+ L I G V+P G S H +
Sbjct: 137 KTPLQKAVELKIEDQLLVDRITGRLVHPASGRSYHKL 173
>sp|Q9HE76|KAD1_NEUCR Adenylate kinase 1 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=adk-1
PE=3 SV=2
Length = 278
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 20 LPLNEAIKLELENVFLDKEIEGGFVYPGEGASTHTV 55
LPL A++L++++ L I G V+P G S H +
Sbjct: 146 LPLQHAVELKIDDSLLVARITGRLVHPASGRSYHRI 181
>sp|Q57840|RPOE1_METJA DNA-directed RNA polymerase subunit E' OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoE1 PE=1 SV=1
Length = 187
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 80/177 (45%), Gaps = 29/177 (16%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVF---LDKEI-------------EGGFV 44
M+ + +I +++PP L E +K L + LDK++ EG V
Sbjct: 1 MYKILEIADVVKVPPEEFGKDLKETVKKILMEKYEGRLDKDVGFVLSIVDVKDIGEGKVV 60
Query: 45 YPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSR 104
+ G+G++ H V F +V+ P + E+I ++ + G + LG + + S ++
Sbjct: 61 H-GDGSAYHPVVFETLVYIPEMYELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIM----- 114
Query: 105 SEPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPM 160
D Y Y+ K G +T V++ D ++ R++++ S+ E+ GSK M
Sbjct: 115 ---DDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAI---SLKAERKRGSKIALTM 165
>sp|Q0V3D5|KAD1_PHANO Adenylate kinase 1 OS=Phaeosphaeria nodorum (strain SN15 / ATCC
MYA-4574 / FGSC 10173) GN=ADK1 PE=3 SV=1
Length = 277
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 21 PLNEAIKLELENVFLDKEIEGGFVYPGEGASTHTV 55
PL A++L++++ L I G V+P G S H +
Sbjct: 150 PLQHAVELQIDDQLLVSRITGRLVHPASGRSYHKI 184
>sp|A5E598|KAD1_LODEL Adenylate kinase 1 OS=Lodderomyces elongisporus (strain ATCC 11503
/ CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239)
GN=ADK1 PE=3 SV=1
Length = 252
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 19 RLPLNEAIKLELENVFLDKEIEGGFVYPGEGASTHTV 55
+ PL AI+L++++ L I G V+P G S H +
Sbjct: 142 KTPLENAIELKIDDELLVDRITGRLVHPASGRSYHKI 178
>sp|Q5HG29|CVFB_STAAC Conserved virulence factor B OS=Staphylococcus aureus (strain COL)
GN=cvfB PE=3 SV=1
Length = 300
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 11 LRLPPHLLRLPLNEAIKLELENVFLDKEIEGG-----FVYPGEGASTHTVKFRLVVFRPF 65
L+ +LL+ P E +KL + D E+E G F+YP + + +
Sbjct: 19 LQGSTYLLKGPNGENVKLNQSEMNDDDELEVGEEYSFFIYPNRSGELFATQNMPDITKD- 77
Query: 66 VGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDP 109
+ AK+ ++D +G R+ +G ++ VP LP P P
Sbjct: 78 --KYDFAKVLKTDRDGARIDVGLPREVLVPWEDLPKVKSLWPQP 119
>sp|Q2FYP3|CVFB_STAA8 Conserved virulence factor B OS=Staphylococcus aureus (strain NCTC
8325) GN=cvfB PE=1 SV=1
Length = 300
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 11 LRLPPHLLRLPLNEAIKLELENVFLDKEIEGG-----FVYPGEGASTHTVKFRLVVFRPF 65
L+ +LL+ P E +KL + D E+E G F+YP + + +
Sbjct: 19 LQGSTYLLKGPNGENVKLNQSEMNDDDELEVGEEYSFFIYPNRSGELFATQNMPDITKD- 77
Query: 66 VGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDP 109
+ AK+ ++D +G R+ +G ++ VP LP P P
Sbjct: 78 --KYDFAKVLKTDRDGARIDVGLPREVLVPWEDLPKVKSLWPQP 119
>sp|Q2FH47|CVFB_STAA3 Conserved virulence factor B OS=Staphylococcus aureus (strain
USA300) GN=cvfB PE=3 SV=1
Length = 300
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 11 LRLPPHLLRLPLNEAIKLELENVFLDKEIEGG-----FVYPGEGASTHTVKFRLVVFRPF 65
L+ +LL+ P E +KL + D E+E G F+YP + + +
Sbjct: 19 LQGSTYLLKGPNGENVKLNQSEMNDDDELEVGEEYSFFIYPNRSGELFATQNMPDITKD- 77
Query: 66 VGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDP 109
+ AK+ ++D +G R+ +G ++ VP LP P P
Sbjct: 78 --KYDFAKVLKTDRDGARIDVGLPREVLVPWEDLPKVKSLWPQP 119
>sp|Q8NWS9|CVFB_STAAW Conserved virulence factor B OS=Staphylococcus aureus (strain MW2)
GN=cvfB PE=3 SV=1
Length = 300
Score = 30.0 bits (66), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 11 LRLPPHLLRLPLNEAIKLELENVFLDKEIEGG-----FVYPGEGASTHTVKFRLVVFRPF 65
L+ +LL+ P E +KL + D E+E G F+YP + + +
Sbjct: 19 LQGSTYLLKGPNGENVKLNQSEMNDDDELEVGEEYSFFIYPNRSGELFATQNMPDITKD- 77
Query: 66 VGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDP 109
+ AK+ ++D +G R+ +G ++ VP LP P P
Sbjct: 78 --KYDFAKVLKTDRDGARIDVGLPREVLVPWEDLPKVKSLWPQP 119
>sp|Q6G9H0|CVFB_STAAS Conserved virulence factor B OS=Staphylococcus aureus (strain
MSSA476) GN=cvfB PE=3 SV=1
Length = 300
Score = 30.0 bits (66), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 11 LRLPPHLLRLPLNEAIKLELENVFLDKEIEGG-----FVYPGEGASTHTVKFRLVVFRPF 65
L+ +LL+ P E +KL + D E+E G F+YP + + +
Sbjct: 19 LQGSTYLLKGPNGENVKLNQSEMNDDDELEVGEEYSFFIYPNRSGELFATQNMPDITKD- 77
Query: 66 VGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDP 109
+ AK+ ++D +G R+ +G ++ VP LP P P
Sbjct: 78 --KYDFAKVLKTDRDGARIDVGLPREVLVPWEDLPKVKSLWPQP 119
>sp|Q6CK57|KAD1_KLULA Adenylate kinase 1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=ADK1 PE=3 SV=1
Length = 227
Score = 30.0 bits (66), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 21 PLNEAIKLELENVFLDKEIEGGFVYPGEGASTHTV 55
PL +A++L++++ L I G V+P G S H V
Sbjct: 118 PLEKAVELKIDDELLVSRITGRLVHPASGRSYHKV 152
>sp|Q7A5Q1|CVFB_STAAN Conserved virulence factor B OS=Staphylococcus aureus (strain N315)
GN=cvfB PE=1 SV=1
Length = 300
Score = 30.0 bits (66), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 11 LRLPPHLLRLPLNEAIKLELENVFLDKEIEGG-----FVYPGEGASTHTVKFRLVVFRPF 65
L+ +LL+ P E +KL + D E+E G F+YP + + +
Sbjct: 19 LQGSTYLLKGPNGENVKLNQSEMNDDDELEVGEEYSFFIYPNRSGELFATQNMPDITKD- 77
Query: 66 VGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDP 109
+ AK+ ++D +G R+ +G ++ VP LP P P
Sbjct: 78 --KYDFAKVLKTDRDGARIDVGLPREVLVPWEDLPKVKSLWPQP 119
>sp|Q99U93|CVFB_STAAM Conserved virulence factor B OS=Staphylococcus aureus (strain Mu50
/ ATCC 700699) GN=cvfB PE=1 SV=1
Length = 300
Score = 30.0 bits (66), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 11 LRLPPHLLRLPLNEAIKLELENVFLDKEIEGG-----FVYPGEGASTHTVKFRLVVFRPF 65
L+ +LL+ P E +KL + D E+E G F+YP + + +
Sbjct: 19 LQGSTYLLKGPNGENVKLNQSEMNDDDELEVGEEYSFFIYPNRSGELFATQNMPDITKD- 77
Query: 66 VGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDP 109
+ AK+ ++D +G R+ +G ++ VP LP P P
Sbjct: 78 --KYDFAKVLKTDRDGARIDVGLPREVLVPWEDLPKVKSLWPQP 119
>sp|Q2YXX8|CVFB_STAAB Conserved virulence factor B OS=Staphylococcus aureus (strain
bovine RF122 / ET3-1) GN=cvfB PE=3 SV=1
Length = 300
Score = 30.0 bits (66), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 11 LRLPPHLLRLPLNEAIKLELENVFLDKEIEGG-----FVYPGEGASTHTVKFRLVVFRPF 65
L+ +LL+ P E +KL + D E+E G F+YP + + +
Sbjct: 19 LQGSTYLLKGPNGENVKLNQSEMNDDDELEVGEEYSFFIYPNRSGELFATQNMPDITKD- 77
Query: 66 VGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDP 109
+ AK+ ++D +G R+ +G ++ VP LP P P
Sbjct: 78 --KYDFAKVLKTDRDGARIDVGLPREVLVPWEDLPKVKSLWPQP 119
>sp|Q6GH17|CVFB_STAAR Conserved virulence factor B OS=Staphylococcus aureus (strain
MRSA252) GN=cvfB PE=3 SV=1
Length = 300
Score = 30.0 bits (66), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 11 LRLPPHLLRLPLNEAIKLELENVFLDKEIEGG-----FVYPGEGASTHTVKFRLVVFRPF 65
L+ +LL+ P E +KL + D E+E G F+YP + + +
Sbjct: 19 LQGSTYLLKGPNGENVKLNQSEMNDDDELEVGEEYSFFIYPNRSGELFATQNMPDITKD- 77
Query: 66 VGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDP 109
+ AK+ ++D +G R+ +G ++ VP LP P P
Sbjct: 78 --KYDFAKVLKTDRDGARIDVGLPREVLVPWEDLPKVKSLWPQP 119
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.143 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,067,625
Number of Sequences: 539616
Number of extensions: 3323627
Number of successful extensions: 6358
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 6312
Number of HSP's gapped (non-prelim): 35
length of query: 177
length of database: 191,569,459
effective HSP length: 110
effective length of query: 67
effective length of database: 132,211,699
effective search space: 8858183833
effective search space used: 8858183833
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)