Query 030455
Match_columns 177
No_of_seqs 151 out of 1127
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 22:46:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030455.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030455hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ckz_B C25, DNA-directed RNA p 100.0 3.6E-52 1.2E-56 335.0 21.6 172 1-177 1-211 (218)
2 3ayh_B DNA-directed RNA polyme 100.0 1.7E-51 5.7E-56 328.1 20.0 172 1-177 1-202 (203)
3 4ayb_E DNA-directed RNA polyme 100.0 2.2E-46 7.5E-51 293.0 16.6 160 1-177 1-175 (180)
4 3h0g_G DNA-directed RNA polyme 100.0 4.9E-41 1.7E-45 261.3 14.4 154 1-174 1-172 (172)
5 2c35_B Human RPB7, DNA-directe 100.0 1.9E-38 6.6E-43 246.4 19.3 157 1-175 1-172 (172)
6 1go3_E DNA-directed RNA polyme 100.0 3E-38 1E-42 248.2 18.9 161 1-177 1-176 (187)
7 1y14_B B16, RPB7, DNA-directed 100.0 7.1E-36 2.4E-40 231.9 17.3 154 1-174 1-171 (171)
8 2b8k_G B16, DNA-directed RNA p 100.0 1.6E-35 5.5E-40 237.5 16.9 155 1-175 1-172 (215)
9 2rf4_A DNA-directed RNA polyme 99.9 7.6E-27 2.6E-31 187.0 16.3 146 1-167 37-213 (214)
10 1wi5_A RRP5 protein homolog; S 99.0 2.9E-10 9.9E-15 82.5 4.6 81 63-173 18-99 (119)
11 1luz_A Protein K3, protein K2; 99.0 3.7E-10 1.2E-14 78.1 4.0 66 61-146 6-75 (88)
12 1kl9_A Eukaryotic translation 99.0 2.1E-09 7.1E-14 83.7 8.5 80 58-169 4-89 (182)
13 2k52_A Uncharacterized protein 98.9 9.6E-09 3.3E-13 69.3 9.3 62 62-145 1-63 (80)
14 2khi_A 30S ribosomal protein S 98.9 1.1E-08 3.9E-13 73.7 9.0 73 56-145 20-93 (115)
15 2cqo_A Nucleolar protein of 40 98.8 3.1E-09 1.1E-13 77.3 4.5 71 56-144 12-84 (119)
16 2eqs_A ATP-dependent RNA helic 98.8 5.8E-09 2E-13 73.9 5.8 66 61-143 7-76 (103)
17 2a19_A EIF-2- alpha, eukaryoti 98.8 2.4E-08 8.3E-13 77.2 9.6 74 64-169 13-89 (175)
18 2id0_A Exoribonuclease 2; RNAs 98.8 1.4E-08 4.8E-13 92.5 9.1 82 57-146 549-636 (644)
19 2k4k_A GSP13, general stress p 98.8 4.3E-08 1.5E-12 72.2 9.1 67 63-147 4-71 (130)
20 2khj_A 30S ribosomal protein S 98.7 5.7E-08 1.9E-12 69.2 8.5 66 62-145 27-93 (109)
21 2nn6_I 3'-5' exoribonuclease C 98.7 4.3E-08 1.5E-12 77.8 8.5 84 61-174 76-168 (209)
22 2je6_I RRP4, exosome complex R 98.7 6E-08 2.1E-12 78.9 8.5 84 61-174 69-153 (251)
23 2wp8_J Exosome complex exonucl 98.6 1.4E-08 4.8E-13 96.2 3.4 78 58-143 879-964 (977)
24 2ba0_A Archeal exosome RNA bin 98.6 1.8E-07 6.3E-12 75.1 8.5 81 62-174 53-134 (229)
25 3aev_A Translation initiation 98.5 5E-07 1.7E-11 74.4 9.2 64 64-145 9-75 (275)
26 2vnu_D Exosome complex exonucl 98.5 5E-08 1.7E-12 90.4 3.2 80 57-144 661-748 (760)
27 2z0s_A Probable exosome comple 98.5 2.5E-07 8.6E-12 74.5 6.8 84 62-174 62-146 (235)
28 1q8k_A Eukaryotic translation 98.5 6.4E-07 2.2E-11 74.9 9.4 74 64-169 11-87 (308)
29 3m7n_A Putative uncharacterize 98.4 6.5E-07 2.2E-11 69.2 6.4 75 62-174 54-139 (179)
30 2ja9_A Exosome complex exonucl 98.3 2.1E-06 7.2E-11 66.2 8.5 80 62-175 3-90 (175)
31 3psi_A Transcription elongatio 98.3 2.3E-06 7.8E-11 82.6 8.9 65 64-145 900-965 (1219)
32 2nn6_H Exosome complex exonucl 98.2 9.7E-07 3.3E-11 73.8 4.5 91 62-175 91-182 (308)
33 3bzc_A TEX; helix-turn-helix, 98.2 6E-07 2.1E-11 83.3 3.1 66 64-147 652-718 (785)
34 3cw2_C Translation initiation 98.2 9.5E-07 3.3E-11 72.4 3.3 64 63-144 8-74 (266)
35 3psf_A Transcription elongatio 98.1 4.8E-07 1.6E-11 86.0 0.0 65 64-145 903-968 (1030)
36 4aid_A Polyribonucleotide nucl 98.0 6.4E-07 2.2E-11 82.4 0.0 71 55-143 626-697 (726)
37 1e3p_A Guanosine pentaphosphat 97.9 1.2E-07 4.1E-12 87.6 -6.8 70 56-143 655-731 (757)
38 2bh8_A 1B11; transcription, mo 97.9 7.9E-06 2.7E-10 57.4 3.8 63 38-100 27-96 (101)
39 3cdi_A Polynucleotide phosphor 97.9 1.7E-06 5.8E-11 79.7 0.0 70 56-143 617-687 (723)
40 3go5_A Multidomain protein wit 97.7 0.00021 7.3E-09 58.9 9.2 67 65-171 151-219 (285)
41 1hh2_P NUSA, N utilization sub 97.4 0.00045 1.5E-08 58.4 7.7 58 63-144 131-188 (344)
42 1k0r_A NUSA; two component arr 97.1 0.0011 3.6E-08 56.5 6.6 95 11-145 91-193 (366)
43 2asb_A Transcription elongatio 96.9 0.0022 7.4E-08 51.9 6.9 61 61-145 2-70 (251)
44 2nn6_G Exosome complex exonucl 96.8 0.0028 9.6E-08 52.3 7.3 79 62-174 123-207 (289)
45 3go5_A Multidomain protein wit 95.9 0.012 4.2E-07 48.3 6.0 74 62-142 2-81 (285)
46 2bx2_L Ribonuclease E, RNAse E 94.8 0.059 2E-06 47.8 6.9 74 62-145 41-118 (517)
47 2r7d_A Ribonuclease II family 90.2 0.071 2.4E-06 46.6 0.8 60 58-146 395-454 (469)
48 3d0f_A Penicillin-binding 1 tr 61.0 23 0.00078 23.9 5.8 62 64-137 31-93 (106)
49 2l55_A SILB,silver efflux prot 56.5 9.7 0.00033 25.0 3.1 56 70-141 6-61 (82)
50 2vb2_X Copper protein, cation 56.0 12 0.00043 24.8 3.6 57 69-141 17-75 (88)
51 3ie4_A GRAM-negative binding p 51.2 17 0.00059 25.1 3.8 31 107-142 52-82 (107)
52 2qcp_X Cation efflux system pr 46.5 29 0.00098 22.5 4.2 56 70-141 10-67 (80)
53 2p9r_A Alpha-2-M, alpha-2-macr 34.7 30 0.001 22.8 2.9 19 125-143 10-28 (102)
54 2kha_A Beta-1,3-glucan-binding 34.3 44 0.0015 23.9 3.9 29 108-141 63-91 (130)
55 1cyx_A CYOA; electron transpor 25.0 53 0.0018 25.3 3.1 20 124-143 41-60 (205)
56 1iby_A Nitrosocyanin; RED copp 24.9 72 0.0025 21.1 3.6 22 121-142 35-56 (112)
57 2l74_A Putative uncharacterize 21.9 94 0.0032 22.0 3.8 33 53-87 34-66 (145)
58 1k0r_A NUSA; two component arr 20.5 2.5E+02 0.0085 23.5 6.6 56 31-86 123-200 (366)
59 3aqy_A Beta-1,3-glucan-binding 20.4 50 0.0017 22.6 1.9 29 108-141 54-82 (106)
No 1
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-52 Score=334.95 Aligned_cols=172 Identities=36% Similarity=0.681 Sum_probs=155.4
Q ss_pred CeEEEEeeeeEEECCCCCCccHHHHHHHHHHhHhcCc---------------ccccceeeeCCCCeeeEEEEEEEeeccC
Q 030455 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDK---------------EIEGGFVYPGEGASTHTVKFRLVVFRPF 65 (177)
Q Consensus 1 MF~~~~l~d~v~i~P~~~~~~~~~~i~~~L~~ky~~k---------------~i~~g~I~~g~G~~~~~V~f~~~~f~p~ 65 (177)
||++++++|+|+|||++|++++.++|+++|++||+|| ++++|+|.+|||+++|+|+|+|++|+||
T Consensus 1 MF~l~~l~d~V~I~P~~f~~~l~~~i~~~L~~kyegkv~~~~Gl~I~v~di~~i~eG~I~~GdG~~~~~V~fk~~~f~p~ 80 (218)
T 2ckz_B 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLKPGDGSSYINVTFRAVVFKPF 80 (218)
T ss_dssp CEEEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHTTEEETTTEEEEEEEEEEEECCCEECSSSSCEEEEEEEEEEEECCC
T ss_pred CeEEEEEEEEEEECHHHcCchHHHHHHHHHHHHhcCcCcCCccEEEEEEEeeeccCcEEeCCCCCEEEEEEEEEEEecCC
Confidence 9999999999999999999999999999999999998 7899999999999999999999999999
Q ss_pred CCCEEEEEEEeeeCCeeEEEe-cccceeEecCCCCCCCcccccCCCCCeeeeEEEEe-CCeeeEEcCCCEEEEEEEEEeC
Q 030455 66 VGEIIAAKLKESDANGLRLSL-GFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEF-GDTKYVIDGLDEIKFRVLSVNY 143 (177)
Q Consensus 66 ~gEv~~g~V~~v~~~Gifv~l-g~~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~-~~~~~~~~~G~~VRvrV~~v~~ 143 (177)
+||+++|+|++++++|+||+| ||+++++|+++++++++.| |++++. |+|.+ ++++++|++||.|||||.++++
T Consensus 81 vGEv~~G~Is~Vt~fGifVeL~g~~eglv~~s~l~~d~~~f--d~~~~~---~vg~~~e~t~~~~~~Gd~VrvrV~~v~~ 155 (218)
T 2ckz_B 81 LGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYY--TPEESA---WIWPMDEETKLYFDVNEKIRFRIEREVF 155 (218)
T ss_dssp TTCEEEEEEEEEETTEEEEECTTSCCCEEEETTTSCTTCEE--ETTTTE---EEEECC--CEEEECTTCEEEEEEEEEEE
T ss_pred CCCEEEEEEEEEccCcEEEEccCccceEEEcHHHCCCCcEE--cCcCce---EEeeccccCCcEEcCCCEEEEEEEEEEc
Confidence 999999999999999999999 9999999999999999999 999999 77766 6779999999999999999999
Q ss_pred CCCcc------cc----------------cCCCCCCCCeEEEEEecCCCCccccCC
Q 030455 144 PSIPI------EQ----------------AEGSKPFAPMVINGSIDYDGLGPVSWW 177 (177)
Q Consensus 144 ~~~~~------~~----------------~~~~~~~~~~~i~gs~~~~gLG~i~Ww 177 (177)
.++.. +. .+..+.+|||.|+|||+++|||+++||
T Consensus 156 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~gs~~~~GLG~~~ww 211 (218)
T 2ckz_B 156 VDVKPKSPKERELEERAQLENEIEGKNEETPQNEKPPAYALLGSCQTDGMGLVSWW 211 (218)
T ss_dssp CCCCC-------------------------------CSEEEEEECCSTTCEEGGGC
T ss_pred ccCCCCCccccccccccccccccccccccccccCCCCCeEEEEEecCCCCchhhhh
Confidence 88631 11 112346889999999999999999999
No 2
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-51 Score=328.07 Aligned_cols=172 Identities=33% Similarity=0.688 Sum_probs=156.4
Q ss_pred CeEEEEeeeeEEECCCCCCccHHHHHHHHHHhHhcCc---------------ccccceeeeCCCCeeeEEEEEEEeeccC
Q 030455 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDK---------------EIEGGFVYPGEGASTHTVKFRLVVFRPF 65 (177)
Q Consensus 1 MF~~~~l~d~v~i~P~~~~~~~~~~i~~~L~~ky~~k---------------~i~~g~I~~g~G~~~~~V~f~~~~f~p~ 65 (177)
||++++++|+|+|||++|++++.++|+++|+++|+|| ++++|+|.+|||+++|+|+|+|++|+||
T Consensus 1 MF~l~~l~d~V~i~P~~f~~~~~~~i~~~L~~~~egkv~~~~Gl~I~v~di~~i~~g~I~~GdG~~~~~V~fk~~~f~p~ 80 (203)
T 3ayh_B 1 MFLLSRFSDIISIHPSNFWKPTKEALAEEIHKKYANKVIQNIGLAICVYDFLKIGEGIIKYGDGSSYMNVVFRLIIFRPF 80 (203)
T ss_dssp CEEEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHTTEEETTTEEEEEEEEEEEECCCEECTTTCCEEEEEEEEEEEECCC
T ss_pred CeEEEEEEEEEEECHHHcCChHHHHHHHHhhhhhCCEEeCCccEEEEEEEeeEecccEEeCCCCCEEEEEEEEEEEEccC
Confidence 9999999999999999999999999999999999998 7899999999999999999999999999
Q ss_pred CCCEEEEEEEeeeCCeeEEEecccceeEecCCCCCCCcccccCCCCCeeeeEEEEe------CCeeeEEcCCCEEEEEEE
Q 030455 66 VGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEF------GDTKYVIDGLDEIKFRVL 139 (177)
Q Consensus 66 ~gEv~~g~V~~v~~~Gifv~lg~~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~------~~~~~~~~~G~~VRvrV~ 139 (177)
+||+++|+|++++++|+||+|||+++++|+++++++++.| |++++. |+|.+ ++++++|++||.|||||.
T Consensus 81 ~GEv~~G~Vs~vt~~GifV~lg~~eglv~~~~l~~d~~~f--d~~~~~---~v~~~~~~~~~~~~~~~~~~Gd~VrvrV~ 155 (203)
T 3ayh_B 81 RGEVMLGKIKSCSEEGIRVTISFFDDIFIPKDMLFDPCVF--RPDERA---WVWKIEGEDGSEGTELYFDIDEEIRFQIE 155 (203)
T ss_dssp TTCEEEEEEEEEETTEEEEECSSCCCEEEEGGGBCTTEEE--EGGGTE---EEEEECCCTTSCCEEEECCTTCEEEEEEE
T ss_pred CCCEEEEEEEEEeccEEEEEEeCceEEEEcHHhCCCCceE--CccCce---EEeecccccccccCCcEEcCCCEEEEEEE
Confidence 9999999999999999999999999999999999999999 999999 88877 888999999999999999
Q ss_pred EEeCCCCccccc---------CCCCCCCCeEEEEEecCCCCccccCC
Q 030455 140 SVNYPSIPIEQA---------EGSKPFAPMVINGSIDYDGLGPVSWW 177 (177)
Q Consensus 140 ~v~~~~~~~~~~---------~~~~~~~~~~i~gs~~~~gLG~i~Ww 177 (177)
++++.++....+ +..+..+||.|+|||++||||+++||
T Consensus 156 ~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~gs~~~~gLG~~~Ww 202 (203)
T 3ayh_B 156 SEDFVDISPKRNKNATAITGTEALESVSPYTLIASCSRDGLGIPAWW 202 (203)
T ss_dssp EEEECC--------------------CCSEEEEEEBCSTTCBCGGGG
T ss_pred EEEccccCCCCccccccccccccccCCCCeEEEEEecCCCCceeeec
Confidence 999977532111 11235679999999999999999999
No 3
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=100.00 E-value=2.2e-46 Score=293.03 Aligned_cols=160 Identities=26% Similarity=0.388 Sum_probs=148.3
Q ss_pred CeEEEEeeeeEEECCCCCCccHHHHHHHHHHhHhcCc---------------ccccceeeeCCCCeeeEEEEEEEeeccC
Q 030455 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDK---------------EIEGGFVYPGEGASTHTVKFRLVVFRPF 65 (177)
Q Consensus 1 MF~~~~l~d~v~i~P~~~~~~~~~~i~~~L~~ky~~k---------------~i~~g~I~~g~G~~~~~V~f~~~~f~p~ 65 (177)
||++++++|+|+|||++|++++.++|+++|+++|+|| ++++|+|.+|||+++++|+|+|++|+|+
T Consensus 1 Mf~l~~l~d~V~IpP~~f~~~~~~~i~~~L~~k~~~kv~~~~G~~I~v~di~~~~~g~I~~gdg~~~~~v~~~~iv~~p~ 80 (180)
T 4ayb_E 1 MYKLIKARSIVRIPPNEFGKPLNEIALNELRQQYQEKILKDLGLVLAILNVKTSEEGMLVFGDGATYHEVEFDMITYVPV 80 (180)
T ss_dssp CEEEEEEEEEEEECGGGTTSCHHHHHHHHHHHHTTTCBCSSSCEEEEEEEEEEEEEEEECSSCSSEEEEEEEEEEEECCC
T ss_pred CeEEEEEEEEEEECHHHhCccHHHHHHHHHHHHhcCeEcCCCcEEEEeeeEeecCceeEccCchHHHHHHhhheeeeecc
Confidence 9999999999999999999999999999999999988 6799999999999999999999999999
Q ss_pred CCCEEEEEEEeeeCCeeEEEecccceeEecCCCCCCCcccccCCCCCeeeeEEEEeCCeeeEEcCCCEEEEEEEEEeCCC
Q 030455 66 VGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPS 145 (177)
Q Consensus 66 ~gEv~~g~V~~v~~~Gifv~lg~~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~~~~~~~~~~G~~VRvrV~~v~~~~ 145 (177)
+||+++|+|++++++|+||++|++++++|+++++++++.| |++++. |.+++++.+|++||.|||||.+++...
T Consensus 81 ~Gev~~G~V~~v~~~G~fv~l~~~~glvh~s~l~~d~~~~--d~~~~~-----~~g~~~~~~~~~Gd~VrvkV~~v~~~~ 153 (180)
T 4ayb_E 81 VQEVVEGEVLQVDNYGVFVNLGPMDGLVHISQITDDTLKY--DNVRGI-----IFGEKSKKVIQKGDKVRARVISVASTV 153 (180)
T ss_dssp TTCEEEEEEEEEETTEEEEECSSSEEEEEGGGSCSSCEEE--CSSSCC-----EEETTTCCCCCTTCEEEEEEEEECC--
T ss_pred CCCEEEEEEeeeccceEEEEECCccceEEeeecCCCcccc--chhcce-----EEEeccCeEECCCCEEEEEEEEEeCCC
Confidence 9999999999999999999999999999999999999999 999988 677889999999999999999998643
Q ss_pred CcccccCCCCCCCCeEEEEEecCCCCccccCC
Q 030455 146 IPIEQAEGSKPFAPMVINGSIDYDGLGPVSWW 177 (177)
Q Consensus 146 ~~~~~~~~~~~~~~~~i~gs~~~~gLG~i~Ww 177 (177)
. ... .+|.+||++||||+++||
T Consensus 154 ~---~~~-------~rI~ls~k~~gLG~~~W~ 175 (180)
T 4ayb_E 154 T---GRL-------PRIALTMRQPYLGKLEWI 175 (180)
T ss_dssp ---------------CEEEECCSTTCEEHHHH
T ss_pred C---ccc-------CcEEEEcCCCCCCCChhH
Confidence 2 111 479999999999999999
No 4
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.9e-41 Score=261.34 Aligned_cols=154 Identities=21% Similarity=0.361 Sum_probs=138.5
Q ss_pred CeEEEEeee-eEEECCCCCCccHHHHHHHHHHhHhcCc-----------------ccccceeeeCCCCeeeEEEEEEEee
Q 030455 1 MFYLSKIEH-TLRLPPHLLRLPLNEAIKLELENVFLDK-----------------EIEGGFVYPGEGASTHTVKFRLVVF 62 (177)
Q Consensus 1 MF~~~~l~d-~v~i~P~~~~~~~~~~i~~~L~~ky~~k-----------------~i~~g~I~~g~G~~~~~V~f~~~~f 62 (177)
||++.+++| +|++||++|++++.++++.+|+++|+|+ ++++|+|.+|||+++|+|+|+|++|
T Consensus 1 Mf~l~~l~d~~i~ipp~~~~~~~~~~i~~~l~~~~~g~vi~~~G~~I~i~~idi~~i~~G~I~~gdg~~~~~v~f~~ivf 80 (172)
T 3h0g_G 1 MPFFLKELSLTISLHPSYFGPRMQDYLKAKLLADVEGTCSGQYGYIICVLDSNTIDIDKGRVVPGQGFAEFEVKYRAVLW 80 (172)
T ss_dssp --CEEEEEEEEEECCGGGCTTTHHHHHHHHHHHHHTTCEETTTEEEEEECTTTSEEECCCEECTTTCCEEEEEEEEEEEE
T ss_pred CeEEEEEecCeEEeCHHHhCccHHHHHHHHHHHHhCCcCcCCccEEEEEEeeeeeEeeCCEEECCCCcEEEEEEEEEeee
Confidence 999999999 9999999999999999999999999987 4579999999999999999999999
Q ss_pred ccCCCCEEEEEEEeeeCCeeEEEecccceeEecCCCCCCCcccccCCCCCeeeeEEEEeCCeeeEEcCCCEEEEEEEEEe
Q 030455 63 RPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVN 142 (177)
Q Consensus 63 ~p~~gEv~~g~V~~v~~~Gifv~lg~~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~~~~~~~~~~G~~VRvrV~~v~ 142 (177)
+|++||+++|+|++++++|+||++|++++++|.+++ ++++.| |++++. |+| ++++.++++||.|||||.+++
T Consensus 81 ~p~~Gev~~G~V~~v~~fG~FV~l~~~~glVh~s~l-~~~~~~--d~~~~~---~~~--~~~~~~~~~Gd~VrvkV~~vd 152 (172)
T 3h0g_G 81 RPFRGEVVDAIVTTVNKMGFFANIGPLNVFVSSHLV-PPDMKF--DPTANP---PNY--SGEDQVIEKGSNVRLKIVGTR 152 (172)
T ss_dssp CCCTTCEEECCCCEEETTEEECCBTTBCCEEEGGGS-CTTCCC--BSSSSS---CBE--ESSSCEECSSCCEEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEEcceEEEEeCCeEEEEEHHHC-CCcccc--Cccccc---ceE--ecCCcEECCCCEEEEEEEEEE
Confidence 999999999999999999999999999987777765 888999 987666 667 567789999999999999999
Q ss_pred CCCCcccccCCCCCCCCeEEEEEecCCCCccc
Q 030455 143 YPSIPIEQAEGSKPFAPMVINGSIDYDGLGPV 174 (177)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~i~gs~~~~gLG~i 174 (177)
+.++ .+.++|||++||||++
T Consensus 153 ~~~~------------~~~~Igtm~~~~LG~~ 172 (172)
T 3h0g_G 153 TDAT------------EIFAIATMKEDYLGVL 172 (172)
T ss_dssp ESSS------------CEEEEEECCSTTCEEC
T ss_pred CCCC------------CceEEEEcCCCCCCCC
Confidence 8542 1678889999999986
No 5
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=100.00 E-value=1.9e-38 Score=246.40 Aligned_cols=157 Identities=29% Similarity=0.422 Sum_probs=145.0
Q ss_pred CeEEEEeeeeEEECCCCCCccHHHHHHHHHHhHhcCc---------------ccccceeeeCCCCeeeEEEEEEEeeccC
Q 030455 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDK---------------EIEGGFVYPGEGASTHTVKFRLVVFRPF 65 (177)
Q Consensus 1 MF~~~~l~d~v~i~P~~~~~~~~~~i~~~L~~ky~~k---------------~i~~g~I~~g~G~~~~~V~f~~~~f~p~ 65 (177)
||++.+++++|++||++|++++.++++.+|+.+|.++ ++++|+|.+|||.++++++|++++|+|+
T Consensus 1 mfil~~m~~~I~~~p~~~~~~~~~~i~~~l~~~~~~~vi~~~G~~I~~~di~~i~~g~i~~~d~~~~~~~~~~~~~~~~~ 80 (172)
T 2c35_B 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPF 80 (172)
T ss_dssp CEEEEEEEEEEEECGGGCCSCHHHHHHHHHHHHHTTCEETTTEEEEEEEEEEEECCCBCCTTCSSEEEEEEEEEEEECCC
T ss_pred CcEEEEEeEEEEECHHHhCChHHHHHHHHHHHHHcCcCcCCceEEEEEEEeeecCCeEEeCCCCCEEEEEEEEEEEeeCC
Confidence 9999999999999999999999999999999999977 5678999999999999999999999999
Q ss_pred CCCEEEEEEEeeeCCeeEEEecccceeEecCCCCCCCcccccCCCCCeeeeEEEEeCCeeeEEcCCCEEEEEEEEEeCCC
Q 030455 66 VGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPS 145 (177)
Q Consensus 66 ~gEv~~g~V~~v~~~Gifv~lg~~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~~~~~~~~~~G~~VRvrV~~v~~~~ 145 (177)
+||+++|+|++++++|+||++|++++++|.+++ ++++.| |+.++. |+|.+++++.++++||.|||||.++++..
T Consensus 81 ~Gev~~G~V~~v~~fG~fV~l~~~~glvhis~l-~~~~~~--d~~~~~---~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~ 154 (172)
T 2c35_B 81 KGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSI-PSEMEF--DPNSNP---PCYKTMDEDIVIQQDDEIRLKIVGTRVDK 154 (172)
T ss_dssp TTCEEEEEEEEEETTEEEEEETTEEEEEEGGGS-CTTEEE--ESSSSS---CEEEETTSCSEEETTCEEEEEEEEEEEET
T ss_pred CCCEEEEEEEEEeCCEEEEEECCEEEEEEHHHC-CCCcEE--CCCCCc---cEEEeCCCCEEECCCCEEEEEEEEEEcCC
Confidence 999999999999999999999999987777755 888889 999988 88999998999999999999999999743
Q ss_pred CcccccCCCCCCCCeEEEEEecCCCCcccc
Q 030455 146 IPIEQAEGSKPFAPMVINGSIDYDGLGPVS 175 (177)
Q Consensus 146 ~~~~~~~~~~~~~~~~i~gs~~~~gLG~i~ 175 (177)
+ ++.++|||++||||+++
T Consensus 155 ~------------~~~~igsm~~~~LG~~~ 172 (172)
T 2c35_B 155 N------------DIFAIGSLMDDYLGLVS 172 (172)
T ss_dssp T------------EEEEEEECCSTTCEEC-
T ss_pred C------------CcEEEEEecCCCCCCCC
Confidence 2 37899999999999985
No 6
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=100.00 E-value=3e-38 Score=248.15 Aligned_cols=161 Identities=21% Similarity=0.321 Sum_probs=146.3
Q ss_pred CeEEEEeeeeEEECCCCCCccHHHHHHHHHHhHhcCc---------------ccccceeeeCCCCeeeEEEEEEEeeccC
Q 030455 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDK---------------EIEGGFVYPGEGASTHTVKFRLVVFRPF 65 (177)
Q Consensus 1 MF~~~~l~d~v~i~P~~~~~~~~~~i~~~L~~ky~~k---------------~i~~g~I~~g~G~~~~~V~f~~~~f~p~ 65 (177)
||++++++|+|+|||++|+..+.++|++.|+++|+|| ++++|+|.++||.+++++.|++++|+|+
T Consensus 1 Mf~~~~l~~~i~I~P~~~~~~i~~~I~~~L~~~~~gk~~~~~G~~i~~idi~~~g~~~I~~~d~~~~~~~~~~~i~~~~~ 80 (187)
T 1go3_E 1 MYKILEIADVVKVPPEEFGKDLKETVKKILMEKYEGRLDKDVGFVLSIVDVKDIGEGKVVHGDGSAYHPVVFETLVYIPE 80 (187)
T ss_dssp CEEEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHTTCEETTTEEEEEEEEEEEECCCBCCTTCCSEEEEEEEEEEEECCC
T ss_pred CcEEEEEEEEEEECHHHhCccHHHHHHHHHHHHhCCeEcCCccEEEEEEEEeeccCCEEeCCCccEEEEEEEEEEEEccC
Confidence 9999999999999999999999999999999999877 6789999999999999999999999999
Q ss_pred CCCEEEEEEEeeeCCeeEEEecccceeEecCCCCCCCcccccCCCCCeeeeEEEEeCCeeeEEcCCCEEEEEEEEEeCCC
Q 030455 66 VGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPS 145 (177)
Q Consensus 66 ~gEv~~g~V~~v~~~Gifv~lg~~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~~~~~~~~~~G~~VRvrV~~v~~~~ 145 (177)
+||+++|+|++++++|+||+++++++++|+++++++++.| |++++. |.+++.+.++++||.|||||.+++..+
T Consensus 81 ~Gev~~G~V~~v~~~G~fV~l~~~eglvhis~l~~~~~~~--d~~~~~-----~~~~~~~~~~~~Gd~V~vkV~~vd~~~ 153 (187)
T 1go3_E 81 MYELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDDYVSY--DPKREA-----IIGKETGKVLEIGDYVRARIVAISLKA 153 (187)
T ss_dssp TTCEEEEEEEEEETTEEEEECSSSEEEEEGGGSCSSCEEE--CCC--C-----EEETTTCCEECTTCEEEEEEEEEECCC
T ss_pred CCCEEEEEEEEEeCcEEEEEEcCccEEEEhHHhCCCcceE--CCccce-----EEecCCCeEEcCCCEEEEEEEEEEccc
Confidence 9999999999999999999999999999999999999999 999988 556777889999999999999999754
Q ss_pred CcccccCCCCCCCCeEEEEEecCCCCccccCC
Q 030455 146 IPIEQAEGSKPFAPMVINGSIDYDGLGPVSWW 177 (177)
Q Consensus 146 ~~~~~~~~~~~~~~~~i~gs~~~~gLG~i~Ww 177 (177)
+ .+. +++|.+||+++|||+++||
T Consensus 154 ~---~p~------~~~I~lS~k~~~LG~~~w~ 176 (187)
T 1go3_E 154 E---RKR------GSKIALTMRQPYLGKLEWI 176 (187)
T ss_dssp --------------CEEEEECCSTTCEEHHHH
T ss_pred C---CCC------ccEEEEEEcCCCCCcHHHH
Confidence 2 110 3699999999999999999
No 7
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=100.00 E-value=7.1e-36 Score=231.86 Aligned_cols=154 Identities=20% Similarity=0.366 Sum_probs=124.2
Q ss_pred CeEEEEeeeeEEECCCCCCccHHHHHHHHHHhHhcCc------------cc-----ccceeeeCCCCeeeEEEEEEEeec
Q 030455 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDK------------EI-----EGGFVYPGEGASTHTVKFRLVVFR 63 (177)
Q Consensus 1 MF~~~~l~d~v~i~P~~~~~~~~~~i~~~L~~ky~~k------------~i-----~~g~I~~g~G~~~~~V~f~~~~f~ 63 (177)
||++.+++++|++||++|++++.++++.+|+.+|.++ ++ ++|+|.+|||.+++++.|++++|+
T Consensus 1 mfil~~m~~~i~~pp~~l~~~~p~~i~~~i~~~~i~~vig~~G~~I~~~di~~~di~~g~i~~~d~~~~~~~~~~~~~~~ 80 (171)
T 1y14_B 1 MFFIKDLSLNITLHPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFK 80 (171)
T ss_dssp CEEEEEEEEECCCCTTSCSTTHHHHHHHHHHHHHTTEEETTTEEEEEECCGGGCBCC------------CEEEEEEEEEC
T ss_pred CeEEEEEEEEEEECHHHhCChHHHHHHHHHHHHHcCcCcCCceEEEEEEEecccccCccEEeCCCCCEEEEEEEEEEEcc
Confidence 9999999999999999999999999999999999876 33 479999999999999999999999
Q ss_pred cCCCCEEEEEEEeeeCCeeEEEecccceeEecCCCCCCCcccccCCCCCeeeeEEEEeCCeeeEEcCCCEEEEEEEEEeC
Q 030455 64 PFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY 143 (177)
Q Consensus 64 p~~gEv~~g~V~~v~~~Gifv~lg~~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~~~~~~~~~~G~~VRvrV~~v~~ 143 (177)
|++||+++|+|++++++|+||++++.|+++|.+++ ++++.| |+.++. |+|.+++ ..+++||.|||||.++++
T Consensus 81 ~~~Gev~~G~V~~v~~fG~FV~l~~~dglvhis~l-~~~~~~--d~~~~~---~~~~~~~--~~~~~Gd~V~vkV~~vd~ 152 (171)
T 1y14_B 81 PFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLM-PQDLTF--NAGSNP---PSYQSSE--DVITIKSRIRVKIEGCIS 152 (171)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETTEEEEEEGGGS-CTTCEE--CC--------CEECSS--CEECTTCEEEEEEEEEEE
T ss_pred CCCCCEEEEEEEEEecCEEEEEecCeEEEEEHHHC-CCCceE--CcccCc---eEEeccc--eEECCCCEEEEEEEEEEc
Confidence 99999999999999999999999998888877754 788899 999888 8898876 569999999999999998
Q ss_pred CCCcccccCCCCCCCCeEEEEEecCCCCccc
Q 030455 144 PSIPIEQAEGSKPFAPMVINGSIDYDGLGPV 174 (177)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~i~gs~~~~gLG~i 174 (177)
..+ ++.++|||++||||++
T Consensus 153 ~~~------------~~~~igsm~~~~LG~~ 171 (171)
T 1y14_B 153 QVS------------SIHAIGSIKEDYLGAI 171 (171)
T ss_dssp ETT------------EEEEEEECCSTTCEEC
T ss_pred CCC------------CcEEEEEcCCCCCCCC
Confidence 432 3899999999999985
No 8
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=100.00 E-value=1.6e-35 Score=237.48 Aligned_cols=155 Identities=21% Similarity=0.370 Sum_probs=141.0
Q ss_pred CeEEEEeeeeEEECCCCCCccHHHHHHHHHHhHhcCc------------ccc-----cceeeeCCCCeeeEEEEEEEeec
Q 030455 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDK------------EIE-----GGFVYPGEGASTHTVKFRLVVFR 63 (177)
Q Consensus 1 MF~~~~l~d~v~i~P~~~~~~~~~~i~~~L~~ky~~k------------~i~-----~g~I~~g~G~~~~~V~f~~~~f~ 63 (177)
||++.+++++|++||++|++++.++++.+|+.+|+|+ ++. +|+|.+|||.+++++.|++++|+
T Consensus 1 MfiL~~m~~~I~ipp~~~~~~~p~~i~~~I~~~~ig~vIg~~G~vI~~~dI~~~di~dG~I~~gdg~~~~~v~~~~i~~~ 80 (215)
T 2b8k_G 1 MFFIKDLSLNITLHPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFK 80 (215)
T ss_dssp CEEEECCEEEEEECGGGCSSSHHHHHHHHHHHSSTTCEETTTEEEEEECCSTTCBCCCEEECSSSCCEEEEEECCEEEEC
T ss_pred CEEeHHHHhhhhcCHHHHChhHhHHHHhcCCHHHCCeEcCCCCEEEEEEEeeecccccceEeCCCHHHHHHHHhhhheec
Confidence 9999999999999999999999999999999999876 444 79999999999999999999999
Q ss_pred cCCCCEEEEEEEeeeCCeeEEEecccceeEecCCCCCCCcccccCCCCCeeeeEEEEeCCeeeEEcCCCEEEEEEEEEeC
Q 030455 64 PFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY 143 (177)
Q Consensus 64 p~~gEv~~g~V~~v~~~Gifv~lg~~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~~~~~~~~~~G~~VRvrV~~v~~ 143 (177)
|++||+++|+|++++++|+||+||+.|+++|.++ |++++.| |+.++. |+|.+++ ..+++||.|||||.++++
T Consensus 81 p~vGev~~G~V~~vt~fG~FVelg~~dGlVhiS~-l~d~~~~--d~~~~~---w~~~~~~--~~~~~Gd~VrVkV~~vd~ 152 (215)
T 2b8k_G 81 PFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHL-MPQDLTF--NAGSNP---PSYQSSE--DVITIKSRIRVKIEGCIS 152 (215)
T ss_dssp CCTTEEEEEEEEEEETTEEEEECTTSEEEEEGGG-SCSSCCC--BSSCSS---CEEECSS--CEEETTCEEEEEEEEEEE
T ss_pred cCCCCEEEEEEEEEecceEEEEecCcEEEEEHHH-CCcccee--cccccc---ceeeccc--cEECCCCEEEEEEEEEEc
Confidence 9999999999999999999999999888888875 4788889 999998 9999876 579999999999999997
Q ss_pred CCCcccccCCCCCCCCeEEEEEecCCCCcccc
Q 030455 144 PSIPIEQAEGSKPFAPMVINGSIDYDGLGPVS 175 (177)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~i~gs~~~~gLG~i~ 175 (177)
..+ ++.++|||+++|||+++
T Consensus 153 ~~~------------~i~~IgSmk~~~LG~~~ 172 (215)
T 2b8k_G 153 QVS------------SIHAIGSIKEDYLGAIS 172 (215)
T ss_dssp ETT------------EEEEEEECCSTTCEEC-
T ss_pred CCC------------ccEEEEEcCCCCCCCcc
Confidence 432 37889999999999985
No 9
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=99.95 E-value=7.6e-27 Score=187.03 Aligned_cols=146 Identities=16% Similarity=0.202 Sum_probs=112.1
Q ss_pred CeEEEEeeeeEEECCCCCCccHHHHHHHHHHhH---hcCc------------ccc------------cceeeeCCCCeee
Q 030455 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENV---FLDK------------EIE------------GGFVYPGEGASTH 53 (177)
Q Consensus 1 MF~~~~l~d~v~i~P~~~~~~~~~~i~~~L~~k---y~~k------------~i~------------~g~I~~g~G~~~~ 53 (177)
||+++++++.|+|||++|++++..++.+.|+.+ |..+ .++ .|+|.+|+|.+++
T Consensus 37 mF~l~~~~~~V~L~P~~f~~~~~~i~~~~L~~ll~ky~~~~~Gv~la~~di~~~~~~~~~~d~~~~~~g~I~~~~g~~~~ 116 (214)
T 2rf4_A 37 CIVRVPIALYVSLAPMYLENPLQGVMKQHLNPLVMKYNNKVGGVVLGYEGLKILDADPLSKEDTSEKLIKITPDTPFGFT 116 (214)
T ss_dssp CEEEEEEEEEEECCGGGTTCHHHHHHHHHHHHHBTSEETTTTEEEEEEEEEETTSCCC-----------------CCCEE
T ss_pred cEEEEEEEEEEEECHHHhCChhHHHHHHHHHHHHhcccCCCCEEEEEEECeEeccCCCcCccccccceeEEeCCCceEEE
Confidence 999999999999999999988777777778774 3322 123 3799999999999
Q ss_pred EEEEEEEeeccCCCCEEEEEEEeeeCCeeEEE-ecccceeEecCCCCCCCcccccCCCC---CeeeeEEEEeCCeeeEEc
Q 030455 54 TVKFRLVVFRPFVGEIIAAKLKESDANGLRLS-LGFFEDIYVPSHLLPSPSRSEPDPYG---RYEVKWIWEFGDTKYVID 129 (177)
Q Consensus 54 ~V~f~~~~f~p~~gEv~~g~V~~v~~~Gifv~-lg~~~~i~i~~~~~~~~~~y~~d~~~---~~~~~w~~~~~~~~~~~~ 129 (177)
+|+|++++||||+||+++|+|+.+++.||.+. +|+|+ ++||++.+|+++.| +++. .. ++|+.+++..
T Consensus 117 ~V~~~~iVFrPf~GevL~G~V~~~s~~~Ig~~~~G~Fn-~~Ip~~~ip~~~~f--~~~~~~~~~---~~wv~~~~~~--- 187 (214)
T 2rf4_A 117 WCHVNLYVWQPQVGDVLEGYIFIQSASHIGLLIHDAFN-ASIKKNNIPVDWTF--VHNDGNRSL---GHWVDSNGEP--- 187 (214)
T ss_dssp EEEEEEEEECCCTTCEEEEEECCCCSSCEEEEETTTEE-EEECSTTSCSSCBC--CCCSCC-CC---CCCBCSSCCB---
T ss_pred EEEEEEEEEecCCCCEEEEEEEEECCCcEEEEEeCCEE-EEEcHHHCCCcccc--cccccccCC---CceEcCCCCC---
Confidence 99999999999999999999999999999985 59996 89999999999999 7765 22 3344443332
Q ss_pred CCCEEEEEEEEEeCCCCcccccCCCCCCCCeEEEEEec
Q 030455 130 GLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGSID 167 (177)
Q Consensus 130 ~G~~VRvrV~~v~~~~~~~~~~~~~~~~~~~~i~gs~~ 167 (177)
+|+.|||||.+++... + -+.|.|||-
T Consensus 188 ig~~IRFrV~~~~~~~------~------~lsI~Gsll 213 (214)
T 2rf4_A 188 IDGKLRFTVRNVHTTG------R------VVSVDGTLI 213 (214)
T ss_dssp CCSEEEEEEEEEECCS------S------SCEEEEECC
T ss_pred CCCEEEEEEEEEEecC------C------EEEEEEEec
Confidence 5999999999998632 1 168889874
No 10
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=98.99 E-value=2.9e-10 Score=82.50 Aligned_cols=81 Identities=11% Similarity=0.053 Sum_probs=62.4
Q ss_pred ccCCCCEEEEEEEeeeCCeeEEEec-ccceeEecCCCCCCCcccccCCCCCeeeeEEEEeCCeeeEEcCCCEEEEEEEEE
Q 030455 63 RPFVGEIIAAKLKESDANGLRLSLG-FFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSV 141 (177)
Q Consensus 63 ~p~~gEv~~g~V~~v~~~Gifv~lg-~~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~~~~~~~~~~G~~VRvrV~~v 141 (177)
...+|++++|+|++++++|+||+|+ .-.+.+|+++.+++++.| ++ .+..+++||.|+|+|.++
T Consensus 18 ~l~~G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~~~~~~~~--~~--------------~~~~~~~Gd~V~vkV~~v 81 (119)
T 1wi5_A 18 ALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQ--KN--------------KGAKLKVGQYLNCIVEKV 81 (119)
T ss_dssp TCCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHHHHHHH--HS--------------SSCCCCTTCEEEEEEEEC
T ss_pred cCCCCCEEEEEEEEEeCceEEEEECCCCeEEEEEEecccccccc--cC--------------ccCEeCCCCEEEEEEEEE
Confidence 3689999999999999999999998 334677777665544444 32 123799999999999998
Q ss_pred eCCCCcccccCCCCCCCCeEEEEEecCCCCcc
Q 030455 142 NYPSIPIEQAEGSKPFAPMVINGSIDYDGLGP 173 (177)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~i~gs~~~~gLG~ 173 (177)
+...+ +|..|++++.||.
T Consensus 82 d~~~~--------------~i~Lslk~~~l~~ 99 (119)
T 1wi5_A 82 KGNGG--------------VVSLSVGHSEVST 99 (119)
T ss_dssp CTTSC--------------EEEEECCCCCSCC
T ss_pred eCCCC--------------EEEEEEchhhccc
Confidence 75332 7888888888875
No 11
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=98.97 E-value=3.7e-10 Score=78.06 Aligned_cols=66 Identities=20% Similarity=0.228 Sum_probs=52.5
Q ss_pred eeccCCCCEEEEEEEeeeCCeeEEEec---ccceeEecC-CCCCCCcccccCCCCCeeeeEEEEeCCeeeEEcCCCEEEE
Q 030455 61 VFRPFVGEIIAAKLKESDANGLRLSLG---FFEDIYVPS-HLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKF 136 (177)
Q Consensus 61 ~f~p~~gEv~~g~V~~v~~~Gifv~lg---~~~~i~i~~-~~~~~~~~y~~d~~~~~~~~w~~~~~~~~~~~~~G~~VRv 136 (177)
++.|.+|++++|+|+ ++++|+||+|+ ..+|++|.+ ++..+++.+ . ...+ +||.|+|
T Consensus 6 y~~~~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~~~~~--~----------------~~~~-~Gd~V~V 65 (88)
T 1luz_A 6 YSLPNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMDRYVE--Y----------------RDKL-VGKTVKV 65 (88)
T ss_dssp SCCCCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHHHHHH--H----------------HHHH-TTCEEEE
T ss_pred ecCCCCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCcccccC--H----------------hHEe-CCCEEEE
Confidence 456999999999999 99999999994 589999999 875543333 1 1134 9999999
Q ss_pred EEEEEeCCCC
Q 030455 137 RVLSVNYPSI 146 (177)
Q Consensus 137 rV~~v~~~~~ 146 (177)
||.+++..++
T Consensus 66 kV~~vd~~~~ 75 (88)
T 1luz_A 66 KVIRVDYTKG 75 (88)
T ss_dssp EEEEEETTTT
T ss_pred EEEEEECCCC
Confidence 9999986443
No 12
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=98.96 E-value=2.1e-09 Score=83.72 Aligned_cols=80 Identities=16% Similarity=0.095 Sum_probs=57.9
Q ss_pred EEEeec---cCCCCEEEEEEEeeeCCeeEEEe---cccceeEecCCCCCCCcccccCCCCCeeeeEEEEeCCeeeEEcCC
Q 030455 58 RLVVFR---PFVGEIIAAKLKESDANGLRLSL---GFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGL 131 (177)
Q Consensus 58 ~~~~f~---p~~gEv~~g~V~~v~~~Gifv~l---g~~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~~~~~~~~~~G 131 (177)
+|-+|+ |.+|+++.|+|++++++|+||+| +.++|++|.+++..+.. ++....+++|
T Consensus 4 ~~~~~~~~~p~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~v------------------~~~~~~~~vG 65 (182)
T 1kl9_A 4 SCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRI------------------RSINKLIRIG 65 (182)
T ss_dssp CCCSSSSSSCCTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC------------------------------CTT
T ss_pred eeEeccccCCCCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCccc------------------CCHHHhcCCC
Confidence 455566 68999999999999999999999 67999999998754321 1223489999
Q ss_pred CEEEEEEEEEeCCCCcccccCCCCCCCCeEEEEEecCC
Q 030455 132 DEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGSIDYD 169 (177)
Q Consensus 132 ~~VRvrV~~v~~~~~~~~~~~~~~~~~~~~i~gs~~~~ 169 (177)
|.|+|+|.+++...+ +|..|+++.
T Consensus 66 d~V~VkVl~vD~~~~--------------rI~LSlk~~ 89 (182)
T 1kl9_A 66 RNECVVVIRVDKEKG--------------YIDLSKRRV 89 (182)
T ss_dssp CEEEEEEEEEETTTT--------------EEEEESTTC
T ss_pred CEEEEEEEEEECCCC--------------EEEEEEeec
Confidence 999999999986433 677777664
No 13
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=98.91 E-value=9.6e-09 Score=69.33 Aligned_cols=62 Identities=13% Similarity=0.142 Sum_probs=51.4
Q ss_pred eccCCCCEEEEEEEeeeCCeeEEEec-ccceeEecCCCCCCCcccccCCCCCeeeeEEEEeCCeeeEEcCCCEEEEEEEE
Q 030455 62 FRPFVGEIIAAKLKESDANGLRLSLG-FFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLS 140 (177)
Q Consensus 62 f~p~~gEv~~g~V~~v~~~Gifv~lg-~~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~~~~~~~~~~G~~VRvrV~~ 140 (177)
|.+.+|++++|+|++++++|+||+++ ..+++++.+++..+ + . ..+++||.|++||.+
T Consensus 1 m~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gllh~sel~~~---~--~-----------------~~~~~Gd~V~v~V~~ 58 (80)
T 2k52_A 1 MDVEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISL---R--L-----------------ENLNVGDEIIVQAID 58 (80)
T ss_dssp CCCCTTCEEEEEEEEEETTEEEEEEETTEEEEECGGGCSSC---C--G-----------------GGCCTTCEEEEEEEE
T ss_pred CCCCCCCEEEEEEEEEeCCEEEEEECCCCEEEEEHHHCCcc---c--c-----------------eeeCCCCEEEEEEEE
Confidence 46889999999999999999999996 78899888765432 1 0 268999999999999
Q ss_pred EeCCC
Q 030455 141 VNYPS 145 (177)
Q Consensus 141 v~~~~ 145 (177)
++...
T Consensus 59 vd~~~ 63 (80)
T 2k52_A 59 VRPEK 63 (80)
T ss_dssp EETTT
T ss_pred EECCC
Confidence 98643
No 14
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=98.87 E-value=1.1e-08 Score=73.66 Aligned_cols=73 Identities=12% Similarity=0.088 Sum_probs=56.2
Q ss_pred EEEEEeeccCCCCEEEEEEEeeeCCeeEEEec-ccceeEecCCCCCCCcccccCCCCCeeeeEEEEeCCeeeEEcCCCEE
Q 030455 56 KFRLVVFRPFVGEIIAAKLKESDANGLRLSLG-FFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEI 134 (177)
Q Consensus 56 ~f~~~~f~p~~gEv~~g~V~~v~~~Gifv~lg-~~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~~~~~~~~~~G~~V 134 (177)
.|..+..++.+|++++|+|++++++|+||+|+ ..+++++.+++..+. + . ++....+++||.|
T Consensus 20 p~~~~~~~~~~G~~~~G~V~~v~~~G~FV~l~~~~~Glvhisel~~~~--~--~-------------~~~~~~~~vGd~V 82 (115)
T 2khi_A 20 HWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTN--K--N-------------IHPSKVVNVGDVV 82 (115)
T ss_dssp -CCCSSCSSCSSCEEEEEEEEEETTEEEEECSTTCEEEEETTSSSCSS--T--T-------------CSSTTTCCTTCEE
T ss_pred CHHHHhhcCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCccc--c--c-------------cCcccEECCCCEE
Confidence 34445578999999999999999999999995 688999888763321 1 1 1223379999999
Q ss_pred EEEEEEEeCCC
Q 030455 135 KFRVLSVNYPS 145 (177)
Q Consensus 135 RvrV~~v~~~~ 145 (177)
++||.+++..+
T Consensus 83 ~vkV~~vd~~~ 93 (115)
T 2khi_A 83 EVMVLDIDEER 93 (115)
T ss_dssp EEEEEEEETTT
T ss_pred EEEEEEEECCC
Confidence 99999998644
No 15
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.82 E-value=3.1e-09 Score=77.27 Aligned_cols=71 Identities=8% Similarity=0.080 Sum_probs=57.3
Q ss_pred EEEEEeeccCCCCEEEEEEEeeeCCeeEEEecc--cceeEecCCCCCCCcccccCCCCCeeeeEEEEeCCeeeEEcCCCE
Q 030455 56 KFRLVVFRPFVGEIIAAKLKESDANGLRLSLGF--FEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDE 133 (177)
Q Consensus 56 ~f~~~~f~p~~gEv~~g~V~~v~~~Gifv~lg~--~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~~~~~~~~~~G~~ 133 (177)
+++.+...|.+|+++.|+|++++++|+||+|+. .++++|.+++..++ + ++....+++||.
T Consensus 12 ~~~~~~~~~~vG~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~~~--~----------------~~~~~~~~~Gd~ 73 (119)
T 2cqo_A 12 RPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCR--V----------------DKPSEIVDVGDK 73 (119)
T ss_dssp CCCCSCCSCCTTCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCSSC--C----------------SCHHHHCCTTCE
T ss_pred chhhhhcccCCCCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCccc--c----------------cChhhcCCCCCE
Confidence 455667889999999999999999999999953 59999998875431 1 122347999999
Q ss_pred EEEEEEEEeCC
Q 030455 134 IKFRVLSVNYP 144 (177)
Q Consensus 134 VRvrV~~v~~~ 144 (177)
|+|||++++..
T Consensus 74 V~VkV~~vd~~ 84 (119)
T 2cqo_A 74 VWVKLIGREMK 84 (119)
T ss_dssp EEEEEEEEEEC
T ss_pred EEEEEEEEecc
Confidence 99999999864
No 16
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.81 E-value=5.8e-09 Score=73.86 Aligned_cols=66 Identities=21% Similarity=0.187 Sum_probs=53.9
Q ss_pred eeccCCCCEEEEEEEeeeCCeeEEEec----ccceeEecCCCCCCCcccccCCCCCeeeeEEEEeCCeeeEEcCCCEEEE
Q 030455 61 VFRPFVGEIIAAKLKESDANGLRLSLG----FFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKF 136 (177)
Q Consensus 61 ~f~p~~gEv~~g~V~~v~~~Gifv~lg----~~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~~~~~~~~~~G~~VRv 136 (177)
.+.+.+|++++|+|++++++|+||+|+ ..++++|.+++..+. + . ++....+++||.|++
T Consensus 7 ~~~~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~--~--~-------------~~~~~~~~~Gd~V~V 69 (103)
T 2eqs_A 7 GEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREG--R--V-------------ANVADVVSKGQRVKV 69 (103)
T ss_dssp CSSCCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSS--C--C-------------CCHHHHCCTTCEEEE
T ss_pred cccCCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCc--c--c-------------CCcccEeCCCCEEEE
Confidence 467899999999999999999999997 689999998874431 1 1 233447999999999
Q ss_pred EEEEEeC
Q 030455 137 RVLSVNY 143 (177)
Q Consensus 137 rV~~v~~ 143 (177)
||.+++.
T Consensus 70 kV~~vd~ 76 (103)
T 2eqs_A 70 KVLSFTG 76 (103)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9999974
No 17
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=98.81 E-value=2.4e-08 Score=77.18 Aligned_cols=74 Identities=18% Similarity=0.093 Sum_probs=55.0
Q ss_pred cCCCCEEEEEEEeeeCCeeEEEe---cccceeEecCCCCCCCcccccCCCCCeeeeEEEEeCCeeeEEcCCCEEEEEEEE
Q 030455 64 PFVGEIIAAKLKESDANGLRLSL---GFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLS 140 (177)
Q Consensus 64 p~~gEv~~g~V~~v~~~Gifv~l---g~~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~~~~~~~~~~G~~VRvrV~~ 140 (177)
|.+|+++.|+|++++++|+||+| +.++|++|.+++..+.. ++....+++||.|+|+|.+
T Consensus 13 p~~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~~v------------------~~~~~~~~vGd~V~vkVl~ 74 (175)
T 2a19_A 13 PEIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRI------------------RSIQKLIRVGKNDVAVVLR 74 (175)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC--------------------------CCCCCCCTTSEEEEEEEE
T ss_pred CCCCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCCccc------------------CCHHHcCCCCCEEEEEEEE
Confidence 44899999999999999999999 67899999988754321 1223379999999999999
Q ss_pred EeCCCCcccccCCCCCCCCeEEEEEecCC
Q 030455 141 VNYPSIPIEQAEGSKPFAPMVINGSIDYD 169 (177)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~i~gs~~~~ 169 (177)
++...+ +|..|+++.
T Consensus 75 vd~~~~--------------~I~LSlk~~ 89 (175)
T 2a19_A 75 VDKEKG--------------YIDLSKRRV 89 (175)
T ss_dssp EETTTT--------------EEEEESTTC
T ss_pred EECCCC--------------eEEEEEEec
Confidence 986443 677777653
No 18
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=98.79 E-value=1.4e-08 Score=92.49 Aligned_cols=82 Identities=13% Similarity=0.078 Sum_probs=69.3
Q ss_pred EEEEeeccCCCC--EEEEEEEeeeCCeeEEEec--ccceeEecCCCCC--CCcccccCCCCCeeeeEEEEeCCeeeEEcC
Q 030455 57 FRLVVFRPFVGE--IIAAKLKESDANGLRLSLG--FFEDIYVPSHLLP--SPSRSEPDPYGRYEVKWIWEFGDTKYVIDG 130 (177)
Q Consensus 57 f~~~~f~p~~gE--v~~g~V~~v~~~Gifv~lg--~~~~i~i~~~~~~--~~~~y~~d~~~~~~~~w~~~~~~~~~~~~~ 130 (177)
++|.++++.+|| +++|+|++++++|+||+|. .++++++.+++.+ +++.| |+..+. +.. +++..+++
T Consensus 549 ~~~~~l~~~vGe~~~f~g~V~~V~~~G~fV~L~~~gieGlVhis~l~~~~d~~~~--d~~~~~-----l~~-~~~~~~~l 620 (644)
T 2id0_A 549 LYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVC--SQENGT-----VQI-KGETVYKV 620 (644)
T ss_dssp HHHHHHGGGTTSCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGGGEEE--ETTTTE-----EEE-TTEEEEET
T ss_pred HHHHHhhhccCCCceEEEEEEEEeCCceEEEEcCCcEEEEEEchhccCcCceeEE--cccccE-----EEe-cCCCEeCC
Confidence 345668899999 9999999999999999993 5899999988864 67788 998887 533 67789999
Q ss_pred CCEEEEEEEEEeCCCC
Q 030455 131 LDEIKFRVLSVNYPSI 146 (177)
Q Consensus 131 G~~VRvrV~~v~~~~~ 146 (177)
||+|+|||.+++..++
T Consensus 621 GD~V~VkV~~vd~~~~ 636 (644)
T 2id0_A 621 TDVIDVTIAEVRMETR 636 (644)
T ss_dssp TCEEEEEEEEEETTTT
T ss_pred CCEEEEEEEEEeCCCC
Confidence 9999999999997543
No 19
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=98.75 E-value=4.3e-08 Score=72.19 Aligned_cols=67 Identities=19% Similarity=0.146 Sum_probs=54.4
Q ss_pred ccCCCCEEEEEEEeeeCCeeEEEe-cccceeEecCCCCCCCcccccCCCCCeeeeEEEEeCCeeeEEcCCCEEEEEEEEE
Q 030455 63 RPFVGEIIAAKLKESDANGLRLSL-GFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSV 141 (177)
Q Consensus 63 ~p~~gEv~~g~V~~v~~~Gifv~l-g~~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~~~~~~~~~~G~~VRvrV~~v 141 (177)
.+.+|+++.|+|++++++|+||+| +.+++++|.+++.+++. . + ....+++||.|+|+|.++
T Consensus 4 ~~~vG~iv~G~V~~i~~~G~FV~l~~~~~Glihisel~~~~~-~--~---------------~~~~~~vGd~V~vkV~~v 65 (130)
T 2k4k_A 4 KFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFV-K--D---------------INEHLSVGDEVQVKVLAV 65 (130)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEETTEEEEEEGGGTSSSCC-S--C---------------GGGTCCTTCEEEEEEEEE
T ss_pred cCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEHHHCCcccc-c--C---------------ccccCCCCCEEEEEEEEE
Confidence 578999999999999999999999 57899999988765421 1 1 223799999999999999
Q ss_pred eCCCCc
Q 030455 142 NYPSIP 147 (177)
Q Consensus 142 ~~~~~~ 147 (177)
+...+.
T Consensus 66 d~~~~k 71 (130)
T 2k4k_A 66 DEEKGK 71 (130)
T ss_dssp ETTTTE
T ss_pred eCCCCE
Confidence 975543
No 20
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=98.72 E-value=5.7e-08 Score=69.23 Aligned_cols=66 Identities=21% Similarity=0.204 Sum_probs=52.3
Q ss_pred eccCCCCEEEEEEEeeeCCeeEEEec-ccceeEecCCCCCCCcccccCCCCCeeeeEEEEeCCeeeEEcCCCEEEEEEEE
Q 030455 62 FRPFVGEIIAAKLKESDANGLRLSLG-FFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLS 140 (177)
Q Consensus 62 f~p~~gEv~~g~V~~v~~~Gifv~lg-~~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~~~~~~~~~~G~~VRvrV~~ 140 (177)
..+.+|+++.|+|++++++|+||+|+ .++++++.+++.++ + . ++....+++||.|+++|.+
T Consensus 27 ~~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gll~~sel~~~---~--~-------------~~~~~~~~vGd~V~v~V~~ 88 (109)
T 2khj_A 27 ALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRD---R--V-------------EDATLVLSVGDEVEAKFTG 88 (109)
T ss_dssp TTCCSSSEEEEEEEEECSSCEEEECSTTCBCCBCTTCCCSS---S--S-------------SSGGGSCCTTCEEEEEEEE
T ss_pred hcCCCCCEEEEEEEEEECCeEEEEECCCCEEEEEHHHcCcc---c--c-------------cChhhccCCCCEEEEEEEE
Confidence 35789999999999999999999996 78888888766443 1 1 1223379999999999999
Q ss_pred EeCCC
Q 030455 141 VNYPS 145 (177)
Q Consensus 141 v~~~~ 145 (177)
++...
T Consensus 89 vd~~~ 93 (109)
T 2khj_A 89 VDRKN 93 (109)
T ss_dssp EETTT
T ss_pred EECCC
Confidence 98643
No 21
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=98.71 E-value=4.3e-08 Score=77.76 Aligned_cols=84 Identities=14% Similarity=0.099 Sum_probs=64.4
Q ss_pred eeccCCCCEEEEEEEeeeCCeeEEEec---------ccceeEecCCCCCCCcccccCCCCCeeeeEEEEeCCeeeEEcCC
Q 030455 61 VFRPFVGEIIAAKLKESDANGLRLSLG---------FFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGL 131 (177)
Q Consensus 61 ~f~p~~gEv~~g~V~~v~~~Gifv~lg---------~~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~~~~~~~~~~G 131 (177)
.+.|.+|+++.|+|++++++|+||+|+ .++|+++.++........ . +-...+++|
T Consensus 76 ~y~p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~--~--------------~~~~~l~~G 139 (209)
T 2nn6_I 76 QLLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDK--V--------------EIYKSFRPG 139 (209)
T ss_dssp CCCCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCC--C--------------CGGGTCCSS
T ss_pred cCCCCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHcccccccc--c--------------chhhhcCCC
Confidence 368999999999999999999999984 457787777665432111 0 112379999
Q ss_pred CEEEEEEEEEeCCCCcccccCCCCCCCCeEEEEEecCCCCccc
Q 030455 132 DEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGSIDYDGLGPV 174 (177)
Q Consensus 132 ~~VRvrV~~v~~~~~~~~~~~~~~~~~~~~i~gs~~~~gLG~i 174 (177)
|.|++||++++- .. -++..|+++++||.+
T Consensus 140 D~V~akVisi~~------~~--------~~i~LS~k~~~lGVv 168 (209)
T 2nn6_I 140 DIVLAKVISLGD------AQ--------SNYLLTTAENELGVV 168 (209)
T ss_dssp SEEEEEEEEEET------TT--------TEEEEECCSSSCEEC
T ss_pred CEEEEEEEEEeC------CC--------CeEEEEEecCCCcEE
Confidence 999999999862 11 279999999999986
No 22
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=98.67 E-value=6e-08 Score=78.94 Aligned_cols=84 Identities=17% Similarity=0.222 Sum_probs=67.0
Q ss_pred eeccCCCCEEEEEEEeeeCCeeEEEec-ccceeEecCCCCCCCcccccCCCCCeeeeEEEEeCCeeeEEcCCCEEEEEEE
Q 030455 61 VFRPFVGEIIAAKLKESDANGLRLSLG-FFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 139 (177)
Q Consensus 61 ~f~p~~gEv~~g~V~~v~~~Gifv~lg-~~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~~~~~~~~~~G~~VRvrV~ 139 (177)
.|.|.+|+++.|+|++++++|+||+++ .++++++.++........ | . +-...+++||.|++||.
T Consensus 69 ~y~p~~GDiV~G~V~~v~~~ga~VdI~~~~~GlL~isei~~~~~~~--~--~-----------~~~~~l~vGD~V~arVi 133 (251)
T 2je6_I 69 FYYPKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINV--G--E-----------DLRRYLDVGDYVIARIE 133 (251)
T ss_dssp CCCCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCT--T--C-----------CCSSSCCTTCEEEEEEE
T ss_pred ccCCCCCCEEEEEEEEEeCceEEEEcCCCeEEEEEHHHhcCCcccc--c--c-----------chhhcCCCCCEEEEEEE
Confidence 478999999999999999999999997 789999988775432111 2 1 12237999999999999
Q ss_pred EEeCCCCcccccCCCCCCCCeEEEEEecCCCCccc
Q 030455 140 SVNYPSIPIEQAEGSKPFAPMVINGSIDYDGLGPV 174 (177)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~i~gs~~~~gLG~i 174 (177)
+++- . ..+..|+++++||++
T Consensus 134 ~v~~-------~--------~~i~LS~r~~~lG~L 153 (251)
T 2je6_I 134 NFDR-------S--------IDPVLSVKGKDLGRV 153 (251)
T ss_dssp EEET-------T--------EEEEEECCSTTCEEC
T ss_pred EECC-------C--------CcEEEEEccccCCcc
Confidence 9872 1 478889999999965
No 23
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=98.61 E-value=1.4e-08 Score=96.21 Aligned_cols=78 Identities=17% Similarity=0.064 Sum_probs=68.4
Q ss_pred EEEeeccCCCCEEEEEEEeeeCCeeEEEec--ccceeEecCCCC--CCCcccccCCCCCeeeeEEEEeCC----eeeEEc
Q 030455 58 RLVVFRPFVGEIIAAKLKESDANGLRLSLG--FFEDIYVPSHLL--PSPSRSEPDPYGRYEVKWIWEFGD----TKYVID 129 (177)
Q Consensus 58 ~~~~f~p~~gEv~~g~V~~v~~~Gifv~lg--~~~~i~i~~~~~--~~~~~y~~d~~~~~~~~w~~~~~~----~~~~~~ 129 (177)
+|.+|++. |++++|+|++++++|+||.|. .++|+++.+++. ++++.| |+..+. +++++ .+..|+
T Consensus 879 ~~~~l~~~-ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis~L~~~~d~y~f--de~~~~-----L~g~~~~g~~~~~~~ 950 (977)
T 2wp8_J 879 VGQVMRNN-ESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAF--DEVEYK-----LTFVPTNSDKPRDVY 950 (977)
T ss_dssp HHHHHHHT-TCEEEEEEEEECSSEEEEECTTTCCEEEEEGGGTCSCGGGCEE--ETTTTE-----EEECCTTCCSCEEEE
T ss_pred Hhhhhccc-ceEEEEEEEEEcCCeEEEEEcCCCeEEEEEeccccCCCceeEE--cccccE-----EEeecCCCccCcEEc
Confidence 45567788 999999999999999999995 589999999987 678889 999988 88876 368999
Q ss_pred CCCEEEEEEEEEeC
Q 030455 130 GLDEIKFRVLSVNY 143 (177)
Q Consensus 130 ~G~~VRvrV~~v~~ 143 (177)
+||+|+|+|.+++-
T Consensus 951 lGD~V~VkV~~vd~ 964 (977)
T 2wp8_J 951 VFDKVEVQVRSVMD 964 (977)
T ss_dssp TTCEEEEEECCCCC
T ss_pred cCCEEEEEEEEEcC
Confidence 99999999999874
No 24
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.57 E-value=1.8e-07 Score=75.09 Aligned_cols=81 Identities=20% Similarity=0.280 Sum_probs=65.0
Q ss_pred eccCCCCEEEEEEEeeeCCeeEEEec-ccceeEecCCCCCCCcccccCCCCCeeeeEEEEeCCeeeEEcCCCEEEEEEEE
Q 030455 62 FRPFVGEIIAAKLKESDANGLRLSLG-FFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLS 140 (177)
Q Consensus 62 f~p~~gEv~~g~V~~v~~~Gifv~lg-~~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~~~~~~~~~~G~~VRvrV~~ 140 (177)
|.|.+|+++.|+|++++++|+||+++ +++++++.++...+. + . ++....+++||.|++||.+
T Consensus 53 y~p~~GDiV~G~V~~v~~~~a~V~I~~~~~g~l~isev~~~~--~--~-------------~~~~~~l~~GD~V~arVi~ 115 (229)
T 2ba0_A 53 YTPSVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMK--P--N-------------KKPNEVLDIGDAIIAKVLN 115 (229)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEGGGCTTCC--T--T-------------SCGGGTCCTTCEEEEEEEE
T ss_pred ccCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHccccc--c--c-------------cchhcccCCCCEEEEEEEE
Confidence 78999999999999999999999997 788998888765211 1 1 2233479999999999999
Q ss_pred EeCCCCcccccCCCCCCCCeEEEEEecCCCCccc
Q 030455 141 VNYPSIPIEQAEGSKPFAPMVINGSIDYDGLGPV 174 (177)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~i~gs~~~~gLG~i 174 (177)
++- . ..+..|+++++||++
T Consensus 116 v~~-------~--------~~i~LS~r~~~lG~L 134 (229)
T 2ba0_A 116 IDP-------K--------MKVTLTMKDRICRPI 134 (229)
T ss_dssp ECT-------T--------CCEEEECCSSSCEEE
T ss_pred ECC-------C--------CcEEEEEccccCCcc
Confidence 862 1 267789999999975
No 25
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=98.49 E-value=5e-07 Score=74.41 Aligned_cols=64 Identities=20% Similarity=0.191 Sum_probs=52.3
Q ss_pred cCCCCEEEEEEEeeeCCeeEEEec---ccceeEecCCCCCCCcccccCCCCCeeeeEEEEeCCeeeEEcCCCEEEEEEEE
Q 030455 64 PFVGEIIAAKLKESDANGLRLSLG---FFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLS 140 (177)
Q Consensus 64 p~~gEv~~g~V~~v~~~Gifv~lg---~~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~~~~~~~~~~G~~VRvrV~~ 140 (177)
|.+|+++.|+|++++++|+||+|+ .++|++|.+++..+... +....+++||.|+++|.+
T Consensus 9 p~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~v~------------------~~~~~~kvGd~V~vkVi~ 70 (275)
T 3aev_A 9 PEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVR------------------NIRDYLKEGQKVVAKVIR 70 (275)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSCCS------------------CGGGTCCTTCEEEEEEEE
T ss_pred CCCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCccccc------------------CHHhccCCCCEEEEEEEE
Confidence 668999999999999999999995 68999999987543211 122378999999999999
Q ss_pred EeCCC
Q 030455 141 VNYPS 145 (177)
Q Consensus 141 v~~~~ 145 (177)
++...
T Consensus 71 vD~~~ 75 (275)
T 3aev_A 71 VDPRK 75 (275)
T ss_dssp EETTT
T ss_pred EECCC
Confidence 98644
No 26
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=98.48 E-value=5e-08 Score=90.42 Aligned_cols=80 Identities=19% Similarity=0.121 Sum_probs=64.9
Q ss_pred EEEEeeccCCCCEEEEEEEeeeCCeeEEEec--ccceeEecCCCC--CCCcccccCCCCCeeeeEEEEeCCe----eeEE
Q 030455 57 FRLVVFRPFVGEIIAAKLKESDANGLRLSLG--FFEDIYVPSHLL--PSPSRSEPDPYGRYEVKWIWEFGDT----KYVI 128 (177)
Q Consensus 57 f~~~~f~p~~gEv~~g~V~~v~~~Gifv~lg--~~~~i~i~~~~~--~~~~~y~~d~~~~~~~~w~~~~~~~----~~~~ 128 (177)
++|.+|++.. ++++|+|++++++|+||.|. .++++++.+++. ++++.| |+..+. +.++++ +..|
T Consensus 661 ~~~~~l~~~~-~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~~~~d~~~f--d~~~~~-----l~g~~~~~~~~~~~ 732 (760)
T 2vnu_D 661 YVGQVMRNNE-STETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAF--DEVEYK-----LTFVPTNSDKPRDV 732 (760)
T ss_dssp HHHHHHHTCC-SEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHCSCGGGCEE--ETTTTE-----EEECCTTCSSCEEE
T ss_pred HHHHHhhcCc-eEEEEEEEEEECCeEEEEEeCCCcEEEEEeccccCCCceeEE--cccccE-----EEEecCCCccCcEE
Confidence 3455677877 99999999999999999995 589999999886 677888 999888 777764 6899
Q ss_pred cCCCEEEEEEEEEeCC
Q 030455 129 DGLDEIKFRVLSVNYP 144 (177)
Q Consensus 129 ~~G~~VRvrV~~v~~~ 144 (177)
++||+|+|+|.+++..
T Consensus 733 ~lGD~V~VkV~~vd~~ 748 (760)
T 2vnu_D 733 YVFDKVEVQVRSVMDP 748 (760)
T ss_dssp ETTCEEEEEEC-----
T ss_pred ecCCEEEEEEEEEECc
Confidence 9999999999999854
No 27
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=98.47 E-value=2.5e-07 Score=74.50 Aligned_cols=84 Identities=15% Similarity=0.264 Sum_probs=65.6
Q ss_pred eccCCCCEEEEEEEeeeCCeeEEEec-ccceeEecCCCCCCCcccccCCCCCeeeeEEEEeCCeeeEEcCCCEEEEEEEE
Q 030455 62 FRPFVGEIIAAKLKESDANGLRLSLG-FFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLS 140 (177)
Q Consensus 62 f~p~~gEv~~g~V~~v~~~Gifv~lg-~~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~~~~~~~~~~G~~VRvrV~~ 140 (177)
|.|.+|+++.|+|++++++|+||+++ .++++++.++...... +... .+-...+++||.|++||++
T Consensus 62 y~p~~GDiV~G~V~~v~~~~~~V~I~~~~~g~l~isei~~~~~----~~~~----------~~~~~~l~~GD~V~a~Vi~ 127 (235)
T 2z0s_A 62 YVPQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPF----NPAV----------DDMQSLLKVGDYIKAKVVA 127 (235)
T ss_dssp CCCCTTCCEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCC----CTTT----------TCCTTSSCTTCEEEEEEEE
T ss_pred cCCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHhCCCcc----ccch----------hhHhhcCCCCCEEEEEEEE
Confidence 78999999999999999999999997 7899999887764211 1111 1223379999999999999
Q ss_pred EeCCCCcccccCCCCCCCCeEEEEEecCCCCccc
Q 030455 141 VNYPSIPIEQAEGSKPFAPMVINGSIDYDGLGPV 174 (177)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~i~gs~~~~gLG~i 174 (177)
++- . ..+..|+++++||.+
T Consensus 128 v~~-------~--------~~i~LS~k~~~lG~l 146 (235)
T 2z0s_A 128 FDK-------T--------RSPLLTVQGEGLGRI 146 (235)
T ss_dssp ECT-------T--------SCEEEECCSSSCEEC
T ss_pred ECC-------C--------CcEEEEEecccCccc
Confidence 862 1 257789999999965
No 28
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=98.47 E-value=6.4e-07 Score=74.88 Aligned_cols=74 Identities=18% Similarity=0.071 Sum_probs=57.7
Q ss_pred cCCCCEEEEEEEeeeCCeeEEEec---ccceeEecCCCCCCCcccccCCCCCeeeeEEEEeCCeeeEEcCCCEEEEEEEE
Q 030455 64 PFVGEIIAAKLKESDANGLRLSLG---FFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLS 140 (177)
Q Consensus 64 p~~gEv~~g~V~~v~~~Gifv~lg---~~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~~~~~~~~~~G~~VRvrV~~ 140 (177)
|.+|+++.|+|++++++|+||+|+ .+++++|.+++..+ + . ++-...+++||.|+++|.+
T Consensus 11 ~~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~~---~--i-------------~~~~~~~kvGd~V~VkVl~ 72 (308)
T 1q8k_A 11 PEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRR---R--I-------------RSINKLIRIGRNECVKVIR 72 (308)
T ss_dssp CSSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCS---S--C-------------SCCTTTCSSSCEEEEEEEE
T ss_pred CCCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCcc---c--c-------------cCHHHhcCCCCEEEEEEEE
Confidence 459999999999999999999994 78999999887542 2 1 1122378999999999999
Q ss_pred EeCCCCcccccCCCCCCCCeEEEEEecCC
Q 030455 141 VNYPSIPIEQAEGSKPFAPMVINGSIDYD 169 (177)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~i~gs~~~~ 169 (177)
++...+ +|..|+++.
T Consensus 73 vD~~~~--------------rI~LSlK~~ 87 (308)
T 1q8k_A 73 VDKEKG--------------YIDLSKRRV 87 (308)
T ss_dssp EETTTT--------------EEEEECSSC
T ss_pred EeCCCC--------------EEEEEEEec
Confidence 986432 666777653
No 29
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=98.36 E-value=6.5e-07 Score=69.24 Aligned_cols=75 Identities=13% Similarity=0.056 Sum_probs=58.4
Q ss_pred eccCCCCEEEEEEEeeeCCeeEEEec-----------ccceeEecCCCCCCCcccccCCCCCeeeeEEEEeCCeeeEEcC
Q 030455 62 FRPFVGEIIAAKLKESDANGLRLSLG-----------FFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDG 130 (177)
Q Consensus 62 f~p~~gEv~~g~V~~v~~~Gifv~lg-----------~~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~~~~~~~~~~ 130 (177)
+.|. |+++.|+|++++++|+||+|+ .++++++.++...+ + . ++-...+++
T Consensus 54 y~p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~---~--~-------------~~~~~~~~~ 114 (179)
T 3m7n_A 54 EIVK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEG---Y--V-------------KEISEAVGY 114 (179)
T ss_dssp CCCT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSS---C--C-------------SSGGGTCCT
T ss_pred ccCC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcc---h--h-------------hCHhhcCCC
Confidence 6688 999999999999999999995 47888888776433 1 1 112237999
Q ss_pred CCEEEEEEEEEeCCCCcccccCCCCCCCCeEEEEEecCCCCccc
Q 030455 131 LDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGSIDYDGLGPV 174 (177)
Q Consensus 131 G~~VRvrV~~v~~~~~~~~~~~~~~~~~~~~i~gs~~~~gLG~i 174 (177)
||.|++||++ + .+..|++++.||.+
T Consensus 115 GD~V~akVi~-----~--------------~i~LS~k~~~lGvv 139 (179)
T 3m7n_A 115 LDILKARVIG-----D--------------NLRLSTKEEEMGVL 139 (179)
T ss_dssp TCEEEEEEEE-----T--------------TTEEECCSTTCEEE
T ss_pred CCEEEEEEEC-----C--------------eEEEEEecCCCCEE
Confidence 9999999998 1 35677888888875
No 30
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=98.32 E-value=2.1e-06 Score=66.24 Aligned_cols=80 Identities=11% Similarity=0.042 Sum_probs=61.0
Q ss_pred eccCCCCEEEEEEEeeeCCeeEEEecc--cceeEecCCCCCCCcccccCCCCCeeeeEEEEeCCeeeEEcCCCEEEEEEE
Q 030455 62 FRPFVGEIIAAKLKESDANGLRLSLGF--FEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 139 (177)
Q Consensus 62 f~p~~gEv~~g~V~~v~~~Gifv~lg~--~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~~~~~~~~~~G~~VRvrV~ 139 (177)
|.|.+|+++.|+|+++..++.+|.++. .+++.+.++ | +... ++.+..+++||.|+.||.
T Consensus 3 Y~P~~gDvViG~V~~v~~~~~~VdI~~~~~~a~L~~s~-------~--~g~~----------k~~r~~l~~GDlV~ArV~ 63 (175)
T 2ja9_A 3 YIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMA-------F--PNAS----------KKNRPTLQVGDLVYARVC 63 (175)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTS-------S--TTCC----------SSSCCCCCTTCEEEEEEE
T ss_pred ccCCCcCEEEEEEEEEECcEEEEEECCCCccEEEEHHH-------C--Cchh----------hhhhccCCCCCEEEEEEE
Confidence 789999999999999999999999976 666665542 3 3211 334558999999999999
Q ss_pred EEeCCCCcccccCCCCCCCCeEEEEE------ecCCCCcccc
Q 030455 140 SVNYPSIPIEQAEGSKPFAPMVINGS------IDYDGLGPVS 175 (177)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~i~gs------~~~~gLG~i~ 175 (177)
+++-. +.+..| ++++|||+++
T Consensus 64 ~~~~~---------------~~~~Ltc~~~~~~r~~~lG~L~ 90 (175)
T 2ja9_A 64 TAEKE---------------LEAEIECFDSTTGRDAGFGILE 90 (175)
T ss_dssp ECCTT---------------SCCEEESSCTTTCSCTTCEEEC
T ss_pred EecCC---------------CceEEEecccccccccCCcCcC
Confidence 97631 133445 8899999874
No 31
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=98.26 E-value=2.3e-06 Score=82.59 Aligned_cols=65 Identities=14% Similarity=0.131 Sum_probs=54.5
Q ss_pred cCCCCEEEEEEEeeeCCeeEEEec-ccceeEecCCCCCCCcccccCCCCCeeeeEEEEeCCeeeEEcCCCEEEEEEEEEe
Q 030455 64 PFVGEIIAAKLKESDANGLRLSLG-FFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVN 142 (177)
Q Consensus 64 p~~gEv~~g~V~~v~~~Gifv~lg-~~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~~~~~~~~~~G~~VRvrV~~v~ 142 (177)
..+|+++.|+|++++++|+||+|+ .++|++|.+++.++++.. ++.. .+++||.|+|||++++
T Consensus 900 l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~--~p~~---------------v~kvGd~V~vkVl~VD 962 (1219)
T 3psi_A 900 FFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRR--PANE---------------IYEIGKTYPAKVIYID 962 (1219)
T ss_dssp SCTTCEEEEEEEEECSSCEEEECTTSCEEEECTTSSSSTTSCS--CSTT---------------TSCTTCEEEEEEEEEE
T ss_pred CCCCCEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCCcccC--CHHH---------------cCCCCCEEEEEEEEEE
Confidence 568999999999999999999996 789999999887664344 5432 6899999999999998
Q ss_pred CCC
Q 030455 143 YPS 145 (177)
Q Consensus 143 ~~~ 145 (177)
...
T Consensus 963 ~~~ 965 (1219)
T 3psi_A 963 YAN 965 (1219)
T ss_dssp GGG
T ss_pred CCC
Confidence 644
No 32
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.20 E-value=9.7e-07 Score=73.78 Aligned_cols=91 Identities=12% Similarity=0.064 Sum_probs=63.0
Q ss_pred eccCCCCEEEEEEEeeeCCeeEEEec-ccceeEecCCCCCCCcccccCCCCCeeeeEEEEeCCeeeEEcCCCEEEEEEEE
Q 030455 62 FRPFVGEIIAAKLKESDANGLRLSLG-FFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLS 140 (177)
Q Consensus 62 f~p~~gEv~~g~V~~v~~~Gifv~lg-~~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~~~~~~~~~~G~~VRvrV~~ 140 (177)
|.|.+|+++.|+|++++++|+||+++ +.+++.+.+++..+.... +.. -.-...+....|++||.|++||.+
T Consensus 91 Y~P~vGDvViG~Vt~V~~~~a~VdI~s~~~~~l~iS~v~f~gg~i-----R~~---~~~D~~~m~~~l~vGDlV~ArVis 162 (308)
T 2nn6_H 91 YIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGEL-----RRR---SAEDELAMRGFLQEGDLISAEVQA 162 (308)
T ss_dssp CCCCSSBCCCEEEEEEETTEEEEECSSSSCEEEESSCCC---------------------CHHHHHHSCSSCEECCEEEE
T ss_pred cCCCCCCEEEEEEEEEeCceEEEEECCCcCCceechhhcccccee-----ecc---cchhhhhhhccCCCCCEEEEEEEE
Confidence 78999999999999999999999998 677776665543211100 010 000001224689999999999999
Q ss_pred EeCCCCcccccCCCCCCCCeEEEEEecCCCCcccc
Q 030455 141 VNYPSIPIEQAEGSKPFAPMVINGSIDYDGLGPVS 175 (177)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~i~gs~~~~gLG~i~ 175 (177)
+.- . ..+..|+++++||++.
T Consensus 163 v~~-------~--------~~i~LStr~~~LGkL~ 182 (308)
T 2nn6_H 163 VFS-------D--------GAVSLHTRSLKYGKLG 182 (308)
T ss_dssp EET-------T--------TEEEEECCSSTTCEEC
T ss_pred cCC-------C--------CCEEEEecCcCCcccC
Confidence 871 1 3678899999999763
No 33
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=98.18 E-value=6e-07 Score=83.26 Aligned_cols=66 Identities=20% Similarity=0.232 Sum_probs=54.5
Q ss_pred cCCCCEEEEEEEeeeCCeeEEEec-ccceeEecCCCCCCCcccccCCCCCeeeeEEEEeCCeeeEEcCCCEEEEEEEEEe
Q 030455 64 PFVGEIIAAKLKESDANGLRLSLG-FFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVN 142 (177)
Q Consensus 64 p~~gEv~~g~V~~v~~~Gifv~lg-~~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~~~~~~~~~~G~~VRvrV~~v~ 142 (177)
..+|++++|+|++++++|+||++| ..+|++|.+++.+ .+.+ |+ +..+++||.|+|||.+++
T Consensus 652 l~vG~iv~G~V~~V~~fGaFV~l~~~~eGLVhiS~Lsd-~~v~--d~---------------~~~~~vGd~V~VkVi~VD 713 (785)
T 3bzc_A 652 LKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSE-KFVK--DP---------------YEVVKAGDIVKVKVMEVD 713 (785)
T ss_dssp CCTTCBCCCEEEEEETTEEEEECSSSSEEEEETTTSCS-SCCS--CH---------------HHHCCTTCCCCCBEEEEE
T ss_pred cCCCCEEEEEEEEEecCCeEEEeCCCcEEEEEHHHcCc-cccC--Ch---------------hheeCCCCEEEEEEEEEE
Confidence 679999999999999999999997 6799999988754 3333 32 337999999999999999
Q ss_pred CCCCc
Q 030455 143 YPSIP 147 (177)
Q Consensus 143 ~~~~~ 147 (177)
.....
T Consensus 714 ~~~~r 718 (785)
T 3bzc_A 714 IPRNR 718 (785)
T ss_dssp TTTTE
T ss_pred CCCCE
Confidence 86543
No 34
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=98.15 E-value=9.5e-07 Score=72.39 Aligned_cols=64 Identities=22% Similarity=0.221 Sum_probs=51.9
Q ss_pred ccCCCCEEEEEEEeeeCCeeEEEe---cccceeEecCCCCCCCcccccCCCCCeeeeEEEEeCCeeeEEcCCCEEEEEEE
Q 030455 63 RPFVGEIIAAKLKESDANGLRLSL---GFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 139 (177)
Q Consensus 63 ~p~~gEv~~g~V~~v~~~Gifv~l---g~~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~~~~~~~~~~G~~VRvrV~ 139 (177)
.|.+|+++.|+|++++++|+||+| +..++++|.+++..+ + - ++....+++||.|+|||+
T Consensus 8 ~~~vG~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~~---~--v-------------~~~~~~~~vGd~V~VkVi 69 (266)
T 3cw2_C 8 LPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSK---W--V-------------KNIRDVLKENRKVIVKVI 69 (266)
T ss_dssp SCCTTCEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSCS---S--C-------------CCHHHHSCTTCEEEEEEC
T ss_pred cCCCCCEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCcc---c--c-------------cCHHHhCcCCCEEEEEEE
Confidence 478999999999999999999999 468899999887443 2 1 222347999999999999
Q ss_pred EEeCC
Q 030455 140 SVNYP 144 (177)
Q Consensus 140 ~v~~~ 144 (177)
+++-.
T Consensus 70 ~vd~~ 74 (266)
T 3cw2_C 70 RVDRR 74 (266)
T ss_dssp CCCSS
T ss_pred EEeCC
Confidence 98753
No 35
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=98.07 E-value=4.8e-07 Score=85.99 Aligned_cols=65 Identities=14% Similarity=0.122 Sum_probs=0.0
Q ss_pred cCCCCEEEEEEEeeeCCeeEEEec-ccceeEecCCCCCCCcccccCCCCCeeeeEEEEeCCeeeEEcCCCEEEEEEEEEe
Q 030455 64 PFVGEIIAAKLKESDANGLRLSLG-FFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVN 142 (177)
Q Consensus 64 p~~gEv~~g~V~~v~~~Gifv~lg-~~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~~~~~~~~~~G~~VRvrV~~v~ 142 (177)
..+|+++.|+|++++++|+||+|+ .++|++|.+++.++++.. ++. ..+++||.|+|||++++
T Consensus 903 l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~--~~~---------------~v~kvGd~V~vkVl~VD 965 (1030)
T 3psf_A 903 FFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRR--PAN---------------EIYEIGKTYPAKVIYID 965 (1030)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcCCCEEEEEEEEEccCeEEEEeCCCcEEEEEHHHcCCCcccC--CHH---------------HcCCCCCEEEEEEEEEE
Confidence 468999999999999999999996 679999998876553233 321 38999999999999998
Q ss_pred CCC
Q 030455 143 YPS 145 (177)
Q Consensus 143 ~~~ 145 (177)
...
T Consensus 966 ~~~ 968 (1030)
T 3psf_A 966 YAN 968 (1030)
T ss_dssp ---
T ss_pred CCC
Confidence 644
No 36
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=98.03 E-value=6.4e-07 Score=82.39 Aligned_cols=71 Identities=14% Similarity=0.125 Sum_probs=1.0
Q ss_pred EEEEEEeeccCCCCEEEEEEEeeeCCeeEEEe-cccceeEecCCCCCCCcccccCCCCCeeeeEEEEeCCeeeEEcCCCE
Q 030455 55 VKFRLVVFRPFVGEIIAAKLKESDANGLRLSL-GFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDE 133 (177)
Q Consensus 55 V~f~~~~f~p~~gEv~~g~V~~v~~~Gifv~l-g~~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~~~~~~~~~~G~~ 133 (177)
..++.++..|.+|++++|+|++++++|+||+| +..+|++|.+++..+. + ++....+++||.
T Consensus 626 ~~i~~i~~~~~vG~v~~G~V~~I~~fGaFVel~~g~eGLvHiSels~~r--v----------------~~~~d~~kvGD~ 687 (726)
T 4aid_A 626 DWIKSITDEAEVGKIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQISNER--V----------------AKPSDVLKEGQM 687 (726)
T ss_dssp HC------------------------------------------------------------------------------
T ss_pred HHHHHHhhhhcCCcEEEEEEEEEeccEEEEEECCCcEEEEEHHHcCccc--c----------------cCccccCCCCCE
Confidence 45778888999999999999999999999999 4689999998875431 1 122348999999
Q ss_pred EEEEEEEEeC
Q 030455 134 IKFRVLSVNY 143 (177)
Q Consensus 134 VRvrV~~v~~ 143 (177)
|+|||.+++-
T Consensus 688 V~VkVi~iD~ 697 (726)
T 4aid_A 688 VKVKLLGFDD 697 (726)
T ss_dssp ----------
T ss_pred EEEEEEEECC
Confidence 9999999985
No 37
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=97.93 E-value=1.2e-07 Score=87.63 Aligned_cols=70 Identities=14% Similarity=0.125 Sum_probs=33.8
Q ss_pred EEEEEe--eccCCCCEEEEEEEeeeCCeeEEEe-cccceeEecCCC----CCCCcccccCCCCCeeeeEEEEeCCeeeEE
Q 030455 56 KFRLVV--FRPFVGEIIAAKLKESDANGLRLSL-GFFEDIYVPSHL----LPSPSRSEPDPYGRYEVKWIWEFGDTKYVI 128 (177)
Q Consensus 56 ~f~~~~--f~p~~gEv~~g~V~~v~~~Gifv~l-g~~~~i~i~~~~----~~~~~~y~~d~~~~~~~~w~~~~~~~~~~~ 128 (177)
..+.+. ..+.+|++++|+|++++++|+||+| +..+|++|.+++ ..+ + - ++....+
T Consensus 655 ~i~~i~~p~~~~vG~i~~G~V~~i~~fGaFV~l~~g~eGLvHiSel~~~~s~~---r--v-------------~~~~~~~ 716 (757)
T 1e3p_A 655 TINGIANPTSPEVGERILGSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGK---R--V-------------ENVEDVL 716 (757)
T ss_dssp ------------------CBEEECC-CSCEECCC---CCCCC-------------------------------------C
T ss_pred HHHHhcchhhcccccEEEEEEEEccccEEEEEEcCCcEEEEEhHHhccccCCC---c--c-------------cCccccc
Confidence 345566 7899999999999999999999999 468999999887 332 1 1 2233479
Q ss_pred cCCCEEEEEEEEEeC
Q 030455 129 DGLDEIKFRVLSVNY 143 (177)
Q Consensus 129 ~~G~~VRvrV~~v~~ 143 (177)
++||+|+|||.+++.
T Consensus 717 ~vGd~V~VkVi~vd~ 731 (757)
T 1e3p_A 717 GVGQKVQVEIAEIDS 731 (757)
T ss_dssp CSSCBCCCCCCCCCS
T ss_pred CCCCEEEEEEEEECC
Confidence 999999999999985
No 38
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=97.91 E-value=7.9e-06 Score=57.44 Aligned_cols=63 Identities=22% Similarity=0.315 Sum_probs=56.5
Q ss_pred ccccceeeeCCCCeeeEEEEEEEe---e---ccCCCCEEEEEEEeeeCCeeEEEe-cccceeEecCCCCC
Q 030455 38 EIEGGFVYPGEGASTHTVKFRLVV---F---RPFVGEIIAAKLKESDANGLRLSL-GFFEDIYVPSHLLP 100 (177)
Q Consensus 38 ~i~~g~I~~g~G~~~~~V~f~~~~---f---~p~~gEv~~g~V~~v~~~Gifv~l-g~~~~i~i~~~~~~ 100 (177)
.-+.|.|.+.+|...+-|.++++. | +|..||++++.|+.++++|+||+| +.+++++|.+++..
T Consensus 27 ~kGfGFI~~~~gg~dvfvH~s~l~~~~~~~~~l~~Ge~V~g~V~~i~~fG~fv~l~~~~eGlvhis~i~~ 96 (101)
T 2bh8_A 27 DKGFGFITPDDGSKDVFVHFSAGSSGAAVRGNPQQGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISW 96 (101)
T ss_dssp GGTEEEEEESSSSCEEEEECCCSCSSSCCCCCCCTTCEEEEEEEECCSEEEEECTTSCEEEEEEEEEEEE
T ss_pred CCCCEEEEeCCCCcEEEEEEEEEecCCccccCCCCCCEEEEEEEEeCCcEEEEEcCCCceEEEEHHHCcc
Confidence 567899999999889999999998 4 689999999999999999999999 57899999987753
No 39
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=97.88 E-value=1.7e-06 Score=79.68 Aligned_cols=70 Identities=16% Similarity=0.137 Sum_probs=0.0
Q ss_pred EEEEEeeccCCCCEEEEEEEeeeCCeeEEEec-ccceeEecCCCCCCCcccccCCCCCeeeeEEEEeCCeeeEEcCCCEE
Q 030455 56 KFRLVVFRPFVGEIIAAKLKESDANGLRLSLG-FFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEI 134 (177)
Q Consensus 56 ~f~~~~f~p~~gEv~~g~V~~v~~~Gifv~lg-~~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~~~~~~~~~~G~~V 134 (177)
.++.+...+.+|++++|+|+++.++|+||+++ ..+|++|.+++..+ + - ++....+++||.|
T Consensus 617 ~i~~i~~~~~vG~i~~G~V~~i~~fGaFVel~~g~eGLvHiSel~~~---~--v-------------~~~~~~~~vGd~V 678 (723)
T 3cdi_A 617 RIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADK---R--V-------------EKVTDYLQMGQEV 678 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhhhhhcCcEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCc---c--c-------------cCcccccCCCCEE
Confidence 45667789999999999999999999999994 68999999887543 2 1 2233479999999
Q ss_pred EEEEEEEeC
Q 030455 135 KFRVLSVNY 143 (177)
Q Consensus 135 RvrV~~v~~ 143 (177)
+|||.+++.
T Consensus 679 ~VkVi~vd~ 687 (723)
T 3cdi_A 679 PVKVLEVDR 687 (723)
T ss_dssp ---------
T ss_pred EEEEEEECC
Confidence 999999985
No 40
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=97.66 E-value=0.00021 Score=58.93 Aligned_cols=67 Identities=12% Similarity=-0.015 Sum_probs=54.6
Q ss_pred CCCCEEEEEEEeeeCCeeEE-Ee-cccceeEecCCCCCCCcccccCCCCCeeeeEEEEeCCeeeEEcCCCEEEEEEEEEe
Q 030455 65 FVGEIIAAKLKESDANGLRL-SL-GFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVN 142 (177)
Q Consensus 65 ~~gEv~~g~V~~v~~~Gifv-~l-g~~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~~~~~~~~~~G~~VRvrV~~v~ 142 (177)
.+|++++|+|.+++++|+|| .+ +.++|++|.+++. + .+++||+|.++|.+++
T Consensus 151 ~~G~~V~g~V~~i~~~G~fV~~i~~g~~Glih~SEl~--------~------------------~l~~Gd~v~~~V~~id 204 (285)
T 3go5_A 151 MQNQNWPAIVYRLKLSGTFVYLPENNMLGFIHPSERY--------A------------------EPRLGQVLDARVIGFR 204 (285)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTTTEEEEECGGGCS--------S------------------CCCTTCEEEEEEEEEE
T ss_pred CCCCEEEEEEEEEeCCcEEEEEeCCCeEEEEEHHHcc--------c------------------cCCCCCEEEEEEEEEE
Confidence 48999999999999999999 99 4788999988652 1 3679999999999998
Q ss_pred CCCCcccccCCCCCCCCeEEEEEecCCCC
Q 030455 143 YPSIPIEQAEGSKPFAPMVINGSIDYDGL 171 (177)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~i~gs~~~~gL 171 (177)
-.++ +|-.|++..+-
T Consensus 205 ~~d~--------------kI~LSlk~~~~ 219 (285)
T 3go5_A 205 EVDR--------------TLNLSLKPRSF 219 (285)
T ss_dssp TTTT--------------EEEEECSCCCC
T ss_pred CCCC--------------eEEEEeChhhh
Confidence 5332 77777777653
No 41
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=97.38 E-value=0.00045 Score=58.42 Aligned_cols=58 Identities=16% Similarity=0.204 Sum_probs=49.3
Q ss_pred ccCCCCEEEEEEEeeeCCeeEEEecccceeEecCCCCCCCcccccCCCCCeeeeEEEEeCCeeeEEcCCCEEEEEEEEEe
Q 030455 63 RPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVN 142 (177)
Q Consensus 63 ~p~~gEv~~g~V~~v~~~Gifv~lg~~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~~~~~~~~~~G~~VRvrV~~v~ 142 (177)
+...|+++.|+|.++++.|+||.+|-.+++++.++++|.. .|++||.|++.|.+++
T Consensus 131 ~~~~GeIV~G~V~ri~~~~v~VDlGk~EgiLp~sE~ip~E------------------------~~~vGD~Vkv~V~~V~ 186 (344)
T 1hh2_P 131 SELKGTVTTAEVIRVMGEWADIRIGKLETRLPKKEWIPGE------------------------EIKAGDLVKVYIIDVV 186 (344)
T ss_dssp TCCTTCEEEEEEEEECSSEEEEEETTEEEEEEGGGSCTTC------------------------CCCTTCEEEEEEEEEE
T ss_pred hhcCCCEEEEEEEEEecCcEEEEeCCeEEEEeHHHcCCCc------------------------CCCCCCEEEEEEEEEE
Confidence 4678999999999999999999999889888887765420 5678999999999998
Q ss_pred CC
Q 030455 143 YP 144 (177)
Q Consensus 143 ~~ 144 (177)
-.
T Consensus 187 ~~ 188 (344)
T 1hh2_P 187 KT 188 (344)
T ss_dssp EE
T ss_pred cC
Confidence 54
No 42
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=97.06 E-value=0.0011 Score=56.49 Aligned_cols=95 Identities=16% Similarity=0.191 Sum_probs=64.8
Q ss_pred EEECCCCCCccHHHHHHHHHHhHhcCcccccceeeeCCCCeeeEEEEEEEeeccCCCCEEEEEEEe----eeCCeeEEEe
Q 030455 11 LRLPPHLLRLPLNEAIKLELENVFLDKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKE----SDANGLRLSL 86 (177)
Q Consensus 11 v~i~P~~~~~~~~~~i~~~L~~ky~~k~i~~g~I~~g~G~~~~~V~f~~~~f~p~~gEv~~g~V~~----v~~~Gifv~l 86 (177)
..+.|..||+--.++.++.|.++... .....++ --|+...||++.|+|.. +++.+++|.|
T Consensus 91 ~~~~~~~fgRiaaqtaKQvI~QkiRE--aEr~~i~--------------~ef~~r~GeIVtG~V~r~~~~v~~~~v~VdL 154 (366)
T 1k0r_A 91 WDDTPEGFGRIAATTARQVMLQRFRD--AENERTY--------------GEFSTREGEIVAGVIQRDSRANARGLVVVRI 154 (366)
T ss_dssp ECCCCTTSTTTTTTTTTHHHHHHHHC--CC----------------------CCCTTCEEEEEEECCHHHHHTTCEEEEE
T ss_pred EeCCHHHhCHHHHHHHHHHHHHHHHH--HHHHHHH--------------HHHHhcCCCEEEEEEEEccccccCCeEEEEe
Confidence 45778999875433333333333221 1111111 13678999999999999 9999999999
Q ss_pred cc----cceeEecCCCCCCCcccccCCCCCeeeeEEEEeCCeeeEEcCCCEEEEEEEEEeCCC
Q 030455 87 GF----FEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPS 145 (177)
Q Consensus 87 g~----~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~~~~~~~~~~G~~VRvrV~~v~~~~ 145 (177)
|- .++++++++++|. + .|++||.||+-|.+|+-..
T Consensus 155 G~~~~k~EgiLP~~EqiP~------E------------------~~~~GDrVkvyV~~V~~~~ 193 (366)
T 1k0r_A 155 GTETKASEGVIPAAEQVPG------E------------------SYEHGNRLRCYVVGVTRGA 193 (366)
T ss_dssp CCSSSCEEEEECGGGSCTT------C------------------CCCTTCEEEEEEEEEECCS
T ss_pred CCCccceEEEEcHHHcCCC------c------------------cCCCCCEEEEEEEEEecCC
Confidence 97 8988888877653 1 5678999999999998643
No 43
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=96.90 E-value=0.0022 Score=51.91 Aligned_cols=61 Identities=16% Similarity=0.274 Sum_probs=49.7
Q ss_pred eeccCCCCEEEEEEEe----eeCCeeEEEecc----cceeEecCCCCCCCcccccCCCCCeeeeEEEEeCCeeeEEcCCC
Q 030455 61 VFRPFVGEIIAAKLKE----SDANGLRLSLGF----FEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLD 132 (177)
Q Consensus 61 ~f~p~~gEv~~g~V~~----v~~~Gifv~lg~----~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~~~~~~~~~~G~ 132 (177)
-|+...||++.|+|.. +++..++|.||- .|+++.+++++|. + .|++||
T Consensus 2 ~~~~r~GeIVtG~V~r~~~~v~~~~ViVdlG~~~~k~EgiLP~~Eqip~------E------------------~~~~GD 57 (251)
T 2asb_A 2 EFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPG------E------------------SYEHGN 57 (251)
T ss_dssp --CCCTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGSCTT------C------------------CCCTTC
T ss_pred chhhcCCCEEEEEEEEccccccCCeEEEEeCCCCcceEEEEcHHHcCCC------c------------------cCCCCC
Confidence 3788999999999999 899999999997 8887777766542 1 567899
Q ss_pred EEEEEEEEEeCCC
Q 030455 133 EIKFRVLSVNYPS 145 (177)
Q Consensus 133 ~VRvrV~~v~~~~ 145 (177)
.||+-|.+++-..
T Consensus 58 rIkayV~~V~~~~ 70 (251)
T 2asb_A 58 RLRCYVVGVTRGA 70 (251)
T ss_dssp EEEEEEEEEECCS
T ss_pred EEEEEEEEEEcCC
Confidence 9999999998643
No 44
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=96.85 E-value=0.0028 Score=52.32 Aligned_cols=79 Identities=11% Similarity=0.090 Sum_probs=56.7
Q ss_pred eccCCCCEEEEEEEeeeCCeeEEEec-ccceeEecCCCCCCCcccccCCCCCeeeeEEEEeCCeeeEEcCCCEEEEEEEE
Q 030455 62 FRPFVGEIIAAKLKESDANGLRLSLG-FFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLS 140 (177)
Q Consensus 62 f~p~~gEv~~g~V~~v~~~Gifv~lg-~~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~~~~~~~~~~G~~VRvrV~~ 140 (177)
+.|.+|+++.|+|++++.....|.++ .+++++...+ | .... ++.+..|++||.|+.||.+
T Consensus 123 YiP~vGDiVIG~Vt~v~~~~~~VdI~s~~~a~L~~~~-------f--~Gat----------k~~r~~f~~GDlV~ArV~s 183 (289)
T 2nn6_G 123 YVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLS-------F--EGAT----------KRNRPNVQVGDLIYGQFVV 183 (289)
T ss_dssp CCCCSSEEEEEEEEEEETTEEEEECSSSSCCCEESCS-------S--SCCS----------SCSSSSSCTTCEEEEEEEE
T ss_pred CCCCCCCEEEEEEEEEeCcEEEEEECCCceeEEehhh-------c--Ccch----------hhhhhhcCCCCEEEEEEEE
Confidence 67999999999999999999999996 4444444332 2 1111 2233479999999999998
Q ss_pred EeCCCCcccccCCCCCCCCeEEEEEe-----cCCCCccc
Q 030455 141 VNYPSIPIEQAEGSKPFAPMVINGSI-----DYDGLGPV 174 (177)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~i~gs~-----~~~gLG~i 174 (177)
+.- . +....|+ ++.+||++
T Consensus 184 ~~~------~---------~~~eLsc~~~~~k~~~lG~L 207 (289)
T 2nn6_G 184 ANK------D---------MEPEMVCIDSCGRANGMGVI 207 (289)
T ss_dssp CCT------T---------SCCEEECSBTTTTBCCCCSC
T ss_pred cCC------C---------CceEEEecccccccccCCEe
Confidence 642 1 2334466 88999987
No 45
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=95.93 E-value=0.012 Score=48.28 Aligned_cols=74 Identities=7% Similarity=-0.134 Sum_probs=48.0
Q ss_pred eccCCCCEEEEEEEeeeCCeeEEEecccceeEecCCCCCC----Ccc-ccc-CCCCCeeeeEEEEeCCeeeEEcCCCEEE
Q 030455 62 FRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPS----PSR-SEP-DPYGRYEVKWIWEFGDTKYVIDGLDEIK 135 (177)
Q Consensus 62 f~p~~gEv~~g~V~~v~~~Gifv~lg~~~~i~i~~~~~~~----~~~-y~~-d~~~~~~~~w~~~~~~~~~~~~~G~~VR 135 (177)
|...+|++++|+|++++++|+|+.++-.+++++.+ .+|. ..+ |++ |.+.+. ......-.++.|+.+.
T Consensus 2 ~~~~~G~~v~g~V~~~~~~G~fv~~~g~egllp~s-e~~~~vGdevev~v~~d~~~r~------iat~~~p~~~~G~~~~ 74 (285)
T 3go5_A 2 MNTNLASFIVGLIIDENDRFYFVQKDGQTYALAKE-EGQHTVGDTVKGFAYTDMKQKL------RLTTLEVTATQDQFGW 74 (285)
T ss_dssp CCTTTTEEEEEEEEEECSSEEEEEETTEEEEEEGG-GCCCCTTSEEEEEEEECTTSCE------EEECSCCCSCSSSCEE
T ss_pred ccccCCCEEEEEEEEEECCEEEEEcCCeEEEEEHH-HCccccCCEEEEEEEECCCCCE------EEecccccccCCCEEE
Confidence 35678999999999999999999998666555554 4443 100 111 222221 1111123567899999
Q ss_pred EEEEEEe
Q 030455 136 FRVLSVN 142 (177)
Q Consensus 136 vrV~~v~ 142 (177)
.+|.++.
T Consensus 75 g~V~~v~ 81 (285)
T 3go5_A 75 GRVTEVR 81 (285)
T ss_dssp EEEEEEE
T ss_pred EEEEEEc
Confidence 9999986
No 46
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=94.84 E-value=0.059 Score=47.78 Aligned_cols=74 Identities=8% Similarity=-0.055 Sum_probs=50.7
Q ss_pred eccCCCCEEEEEEEeeeCC--eeEEEec-ccceeEecCCCCCCCcccccCCCCCeeeeEEEEe-CCeeeEEcCCCEEEEE
Q 030455 62 FRPFVGEIIAAKLKESDAN--GLRLSLG-FFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEF-GDTKYVIDGLDEIKFR 137 (177)
Q Consensus 62 f~p~~gEv~~g~V~~v~~~--Gifv~lg-~~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~-~~~~~~~~~G~~VRvr 137 (177)
-++.+|.++.|+|+++.++ |+||.+| --++++|.++..+++ + .... . ... .+-...++.||.|.|+
T Consensus 41 ~~~~vGnIY~GkV~rv~p~~~aAFVdiG~gk~gfLhisei~~~~--~--~~~~-~-----~~~~~~i~d~lk~Gq~VlVQ 110 (517)
T 2bx2_L 41 HEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREY--F--PANY-S-----AHGRPNIKDVLREGQEVIVQ 110 (517)
T ss_dssp SCCCTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSCGGG--C--C-------------CCCGGGTCCTTCEEEEE
T ss_pred CcCCCCCEEEEEEEEeccCCceEEEEeCCCcEEEEEHHHcChhh--h--cccc-c-----cccccchhhhccCCCEEEEE
Confidence 3467999999999999999 9999998 446788888774432 2 2110 0 000 1112358899999999
Q ss_pred EEEEeCCC
Q 030455 138 VLSVNYPS 145 (177)
Q Consensus 138 V~~v~~~~ 145 (177)
|.......
T Consensus 111 V~Ke~~g~ 118 (517)
T 2bx2_L 111 IDKEERGN 118 (517)
T ss_dssp EEECCCTT
T ss_pred EEeecccc
Confidence 99976543
No 47
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=90.25 E-value=0.071 Score=46.64 Aligned_cols=60 Identities=8% Similarity=0.084 Sum_probs=41.4
Q ss_pred EEEeeccCCCCEEEEEEEeeeCCeeEEEecccceeEecCCCCCCCcccccCCCCCeeeeEEEEeCCeeeEEcCCCEEEEE
Q 030455 58 RLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFR 137 (177)
Q Consensus 58 ~~~~f~p~~gEv~~g~V~~v~~~Gifv~lg~~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~~~~~~~~~~G~~VRvr 137 (177)
+|.+++..+|++++|+|..+... +++++.+++. + | .. .+..+++||.|+||
T Consensus 395 ~~~~l~~~~g~~f~g~vv~l~~~---------~glV~v~~l~-----~--d---~~----------~~~~~~lGd~V~V~ 445 (469)
T 2r7d_A 395 TLRFIAAQPERVWDAVVVDRRGA---------QATLLIPDLA-----F--D---VQ----------VNTPAAPGTALQVQ 445 (469)
T ss_dssp HHHHHHTCTTCCEEEEEEEEETT---------EEEEEEGGGT-----E--E---EE----------EECCCCTTCEEEEE
T ss_pred HHHHHHhCCCCEEEEEEEEEeCc---------EEEEEECCCC-----e--E---Ee----------cCCcCCCCCEEEEE
Confidence 45567789999999998765432 3455555432 1 2 11 12379999999999
Q ss_pred EEEEeCCCC
Q 030455 138 VLSVNYPSI 146 (177)
Q Consensus 138 V~~v~~~~~ 146 (177)
|.+++..++
T Consensus 446 v~~vd~~~~ 454 (469)
T 2r7d_A 446 FADIDLPQM 454 (469)
T ss_dssp EEEEETTTT
T ss_pred EEEEccCCC
Confidence 999998765
No 48
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=61.02 E-value=23 Score=23.89 Aligned_cols=62 Identities=15% Similarity=0.006 Sum_probs=38.3
Q ss_pred cCCCCEEEEEEEeeeCCeeEEEecccceeEecCCCCCCCcccccCCCCCeeeeEEEEeCC-eeeEEcCCCEEEEE
Q 030455 64 PFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGD-TKYVIDGLDEIKFR 137 (177)
Q Consensus 64 p~~gEv~~g~V~~v~~~Gifv~lg~~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~~~-~~~~~~~G~~VRvr 137 (177)
|..|+.+-|+|+++++.++.+.+.-=+...++.+-|.=--.| .. .. +. -...++.||.|+|+
T Consensus 31 ~~~~~~~~AvV~~v~~~~~~v~~~~g~~~~l~~~~~~WA~~~--~~--~~--------~~~~~~~l~~GdvI~V~ 93 (106)
T 3d0f_A 31 GNSDDILAAVVLSATPGAVEAFRKNGETIRITGDGLKAAHRF--LS--ND--------PKIGEKRIRPGALIRVK 93 (106)
T ss_dssp CTTTTCEEEEEEEEETTEEEEEETTSCEEEECGGGGSTTGGG--TT--TC--------TTTGGGSCCTTEEEEEE
T ss_pred CccCCeEEEEEEEeCCCeEEEEEcCCCeEEEcHHHChhhhhc--cc--cc--------ccchhccCCCCCEEEEE
Confidence 556889999999999999998883212344554332210011 10 01 12 23479999999998
No 49
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=56.49 E-value=9.7 Score=24.98 Aligned_cols=56 Identities=5% Similarity=-0.071 Sum_probs=34.3
Q ss_pred EEEEEEeeeCCeeEEEecccceeEecCCCCCCCcccccCCCCCeeeeEEEEeCCeeeEEcCCCEEEEEEEEE
Q 030455 70 IAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSV 141 (177)
Q Consensus 70 ~~g~V~~v~~~Gifv~lg~~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~~~~~~~~~~G~~VRvrV~~v 141 (177)
..|+|.+++...+-++-+++..+=-|.- -..| .-.... .-.-++.||+|+|.+...
T Consensus 6 ~~G~V~~vd~~~iTi~H~pI~~l~wPaM----TM~F--~v~~~~----------~l~~lk~Gd~V~F~~~~~ 61 (82)
T 2l55_A 6 AVGRIQSIGERSLIIAHEAIPSAQWGAM----TMEF--AAPPAG----------LPQGLKAGDRVAFSFRLD 61 (82)
T ss_dssp EEEEEEECCSSEEEEEECCCTTTTCCCE----EEEE--ECCTTC----------CCSSCSTTCEEEEEEEEE
T ss_pred EeEEEEEEccccEEEecCCccccCCCce----EEEE--EcCChh----------HhhcCCCCCEEEEEEEEC
Confidence 4899999999986566577754322221 1223 211111 123689999999999764
No 50
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=56.02 E-value=12 Score=24.77 Aligned_cols=57 Identities=12% Similarity=0.078 Sum_probs=34.6
Q ss_pred EEEEEEEeeeCCe--eEEEecccceeEecCCCCCCCcccccCCCCCeeeeEEEEeCCeeeEEcCCCEEEEEEEEE
Q 030455 69 IIAAKLKESDANG--LRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSV 141 (177)
Q Consensus 69 v~~g~V~~v~~~G--ifv~lg~~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~~~~~~~~~~G~~VRvrV~~v 141 (177)
...|+|.+++... +-++-|++..+=-|.-- ..| .-.... .-.-++.||+|+|.+...
T Consensus 17 ~~~G~V~~id~~~~~iTi~H~pI~~l~wpaMT----M~F--~v~~~~----------~l~~lk~Gd~V~F~~~~~ 75 (88)
T 2vb2_X 17 SATGVVKGIDLESKKITIHHDPIAAVNWPEMT----MRF--TITPQT----------KMSEIKTGDKVAFNFVQQ 75 (88)
T ss_dssp EEEEEEEEEETTTTEEEEEECCBGGGTBCSEE----EEE--ECCTTC----------EECCCCTTCEEEEEEEEE
T ss_pred EEEEEEEEEcCCCCEEEEecCCcccCCCCceE----EEE--EcCChh----------hhhcCCCCCEEEEEEEEe
Confidence 3789999999875 44454777543323211 223 211111 123689999999999764
No 51
>3ie4_A GRAM-negative binding protein 3; immunoglobulin fold, immune system; 1.45A {Drosophila melanogaster}
Probab=51.17 E-value=17 Score=25.10 Aligned_cols=31 Identities=13% Similarity=0.238 Sum_probs=23.1
Q ss_pred cCCCCCeeeeEEEEeCCeeeEEcCCCEEEEEEEEEe
Q 030455 107 PDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVN 142 (177)
Q Consensus 107 ~d~~~~~~~~w~~~~~~~~~~~~~G~~VRvrV~~v~ 142 (177)
....... |.+++.+..++.||+|...+.-..
T Consensus 52 t~~~~Gr-----W~~~d~~~~lk~GD~I~Ywv~V~~ 82 (107)
T 3ie4_A 52 VKAKNGR-----WTFRDRITALKPGDTLYYWTYVIY 82 (107)
T ss_dssp CCCBTTE-----EEEEESSCCCCTTCEEEEEEEEEE
T ss_pred eEecCCE-----EEEECCCceeCCCCEEEEEEEEEE
Confidence 3455666 556667789999999999887653
No 52
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=46.54 E-value=29 Score=22.46 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=34.2
Q ss_pred EEEEEEeeeCCe--eEEEecccceeEecCCCCCCCcccccCCCCCeeeeEEEEeCCeeeEEcCCCEEEEEEEEE
Q 030455 70 IAAKLKESDANG--LRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSV 141 (177)
Q Consensus 70 ~~g~V~~v~~~G--ifv~lg~~~~i~i~~~~~~~~~~y~~d~~~~~~~~w~~~~~~~~~~~~~G~~VRvrV~~v 141 (177)
..|+|.+++... +-++-|++..+=-|.-- ..| .-.... .-.-++.||+|+|.+...
T Consensus 10 ~~G~V~~id~~~~~iTi~H~pI~~l~wpaMT----M~F--~v~~~~----------~l~~lk~Gd~V~F~~~~~ 67 (80)
T 2qcp_X 10 ATGVVKGIDLESKKITIHHDPIAAVNWPEMT----MRF--TITPQT----------KMSEIKTGDKVAFNFVQQ 67 (80)
T ss_dssp EEEEEEEEETTTTEEEEEECCBGGGTBCSEE----EEE--ECCTTC----------EECCCCTTCEEEEEEEEE
T ss_pred EEEEEEEEcCCCCEEEEEcCCcccCCCCceE----EEE--EccChh----------hhhcCCCCCEEEEEEEEe
Confidence 689999999876 44555777543323211 223 211111 123689999999999764
No 53
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=34.67 E-value=30 Score=22.80 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=16.1
Q ss_pred eeEEcCCCEEEEEEEEEeC
Q 030455 125 KYVIDGLDEIKFRVLSVNY 143 (177)
Q Consensus 125 ~~~~~~G~~VRvrV~~v~~ 143 (177)
+-.|++||.|++|+...+-
T Consensus 10 r~iYrPGetV~~~~~~~~~ 28 (102)
T 2p9r_A 10 KSIYKPGQTVKFRVVSMDE 28 (102)
T ss_dssp CSEECTTCEEEEEEEEECG
T ss_pred CcccCCCCEEEEEEEEECC
Confidence 3489999999999998754
No 54
>2kha_A Beta-1,3-glucan-binding protein; glycoprotein, immune response, innate immunity, secreted, sugar binding protein; NMR {Plodia interpunctella}
Probab=34.32 E-value=44 Score=23.85 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=22.1
Q ss_pred CCCCCeeeeEEEEeCCeeeEEcCCCEEEEEEEEE
Q 030455 108 DPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSV 141 (177)
Q Consensus 108 d~~~~~~~~w~~~~~~~~~~~~~G~~VRvrV~~v 141 (177)
...... |.+++.+..++.||+|...+.-.
T Consensus 63 ~~~~Gr-----W~~~d~~~~Lk~GD~IyYw~~V~ 91 (130)
T 2kha_A 63 KPKEGR-----WTFRDRNAKLKLGDKIYFWTYVI 91 (130)
T ss_dssp SCSSSE-----EEEEETTCCCCTTCEEEEEEEEE
T ss_pred eecCCE-----EEEECCceeeCCCCEEEEEEEEE
Confidence 445566 55566677999999999998875
No 55
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=25.01 E-value=53 Score=25.30 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=17.3
Q ss_pred eeeEEcCCCEEEEEEEEEeC
Q 030455 124 TKYVIDGLDEIKFRVLSVNY 143 (177)
Q Consensus 124 ~~~~~~~G~~VRvrV~~v~~ 143 (177)
+.+.+-.|+.|||+|.+.+.
T Consensus 41 n~l~lP~g~~V~~~lTS~DV 60 (205)
T 1cyx_A 41 NEIAFPANTPVYFKVTSNSV 60 (205)
T ss_dssp SEEEEETTSCEEEEEEESSS
T ss_pred ceEEEeCCCEEEEEEecCCc
Confidence 46899999999999998654
No 56
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=24.93 E-value=72 Score=21.06 Aligned_cols=22 Identities=18% Similarity=0.104 Sum_probs=16.1
Q ss_pred eCCeeeEEcCCCEEEEEEEEEe
Q 030455 121 FGDTKYVIDGLDEIKFRVLSVN 142 (177)
Q Consensus 121 ~~~~~~~~~~G~~VRvrV~~v~ 142 (177)
+.-....++.|+.||+++.+.+
T Consensus 35 f~p~~i~v~~G~~V~~~~~n~d 56 (112)
T 1iby_A 35 NEPETLVVKKGDAVKVVVENKS 56 (112)
T ss_dssp EESCEEEEETTCEEEEEEEECS
T ss_pred EcCCEEEEeCCCEEEEEEEECC
Confidence 3445668888888888887754
No 57
>2l74_A Putative uncharacterized protein PA4608; PILZ, C-DI-GMP, unknown function, C-DI-GMP binding P; HET: C2E; NMR {Pseudomonas aeruginosa}
Probab=21.95 E-value=94 Score=22.00 Aligned_cols=33 Identities=6% Similarity=0.041 Sum_probs=24.7
Q ss_pred eEEEEEEEeeccCCCCEEEEEEEeeeCCeeEEEec
Q 030455 53 HTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 87 (177)
Q Consensus 53 ~~V~f~~~~f~p~~gEv~~g~V~~v~~~Gifv~lg 87 (177)
+.++..+.+..+ |..+.|++..++..|+.+++.
T Consensus 34 v~~~~~~~l~~~--g~~~~~~~~DiSl~G~~I~~~ 66 (145)
T 2l74_A 34 IAFDADSEILQG--ERRWEVLLHDVSLHGILVGQP 66 (145)
T ss_dssp CCCCEEEEEEET--TEEEEEEEEEEETTEEEEECC
T ss_pred EEEeeEEEEEEC--CEEEEEEEEEeccCCCEEEcC
Confidence 333444444444 999999999999999999873
No 58
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=20.48 E-value=2.5e+02 Score=23.47 Aligned_cols=56 Identities=16% Similarity=0.155 Sum_probs=34.4
Q ss_pred HhHhcCc--ccccceeee-----CCCCeeeEEE-----EEEEeec----c----CCCCEEEEEEEeeeCC--eeEEEe
Q 030455 31 ENVFLDK--EIEGGFVYP-----GEGASTHTVK-----FRLVVFR----P----FVGEIIAAKLKESDAN--GLRLSL 86 (177)
Q Consensus 31 ~~ky~~k--~i~~g~I~~-----g~G~~~~~V~-----f~~~~f~----p----~~gEv~~g~V~~v~~~--Gifv~l 86 (177)
.++|..+ ++-.|.|.. .++.++..+- -.++.-+ | ..|+.+.+.|.+|.+. |..+.|
T Consensus 123 ~~ef~~r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~EqiP~E~~~~GDrVkvyV~~V~~~~kgpqI~L 200 (366)
T 1k0r_A 123 YGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLITL 200 (366)
T ss_dssp ----CCCTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSCTTCCCCTTCEEEEEEEEEECCSSSCEEEE
T ss_pred HHHHHhcCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcCCCccCCCCCEEEEEEEEEecCCCccEEEE
Confidence 3456655 566666665 3466777775 3555532 2 3699999999999986 654444
No 59
>3aqy_A Beta-1,3-glucan-binding protein; beta-sandwich, immune receptor, sugar bindi protein; 1.58A {Plodia interpunctella} PDB: 3aqz_A* 3aqx_A* 2rqe_A
Probab=20.38 E-value=50 Score=22.63 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=21.8
Q ss_pred CCCCCeeeeEEEEeCCeeeEEcCCCEEEEEEEEE
Q 030455 108 DPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSV 141 (177)
Q Consensus 108 d~~~~~~~~w~~~~~~~~~~~~~G~~VRvrV~~v 141 (177)
...... |.+++.+..++.||+|...+.-.
T Consensus 54 ~~~~Gr-----W~~~d~~~~lk~GD~i~Yw~~V~ 82 (106)
T 3aqy_A 54 KPKEGR-----WTFRDRNVKLKLGDKIYFWTYVI 82 (106)
T ss_dssp CCBTTE-----EEEEECSCCCCTTCEEEEEEEEE
T ss_pred EecCCE-----EEEECCceEeCCCCEEEEEEEEE
Confidence 455566 55566677999999999998654
Done!