Query 030456
Match_columns 177
No_of_seqs 119 out of 1048
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 14:00:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030456.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030456hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0868 Glutathione S-transfer 100.0 6.7E-37 1.5E-41 203.7 14.6 174 2-176 6-180 (217)
2 PRK09481 sspA stringent starva 100.0 4.4E-36 9.6E-41 214.7 18.4 164 1-176 10-173 (211)
3 PRK15113 glutathione S-transfe 100.0 1.3E-35 2.9E-40 212.7 16.5 173 1-175 5-182 (214)
4 PLN02473 glutathione S-transfe 100.0 5.3E-34 1.1E-38 204.5 19.6 169 2-172 3-177 (214)
5 TIGR01262 maiA maleylacetoacet 100.0 9.2E-34 2E-38 202.7 19.6 173 3-175 1-176 (210)
6 PRK13972 GSH-dependent disulfi 100.0 3E-34 6.6E-39 205.9 15.8 167 1-172 1-174 (215)
7 COG0625 Gst Glutathione S-tran 100.0 3E-33 6.5E-38 200.2 18.2 171 2-175 1-176 (211)
8 PLN02395 glutathione S-transfe 100.0 4.9E-32 1.1E-36 194.4 19.3 168 2-172 3-176 (215)
9 PRK11752 putative S-transferas 100.0 3.5E-32 7.5E-37 200.3 18.8 166 1-172 44-220 (264)
10 PRK10542 glutathionine S-trans 100.0 3.4E-32 7.4E-37 193.3 15.7 167 2-176 1-170 (201)
11 PRK10357 putative glutathione 100.0 1.4E-31 3.1E-36 190.3 17.3 166 2-173 1-167 (202)
12 KOG0406 Glutathione S-transfer 100.0 6.8E-31 1.5E-35 185.0 16.3 161 2-172 10-172 (231)
13 KOG0867 Glutathione S-transfer 100.0 1.7E-29 3.6E-34 181.9 15.5 169 1-171 2-174 (226)
14 PRK10387 glutaredoxin 2; Provi 100.0 1.3E-28 2.9E-33 176.0 13.7 163 2-174 1-185 (210)
15 PLN02378 glutathione S-transfe 100.0 1.8E-27 3.8E-32 170.5 17.0 146 6-171 16-161 (213)
16 TIGR00862 O-ClC intracellular 100.0 3.5E-27 7.5E-32 169.8 17.0 149 8-173 17-184 (236)
17 PTZ00057 glutathione s-transfe 100.0 6.4E-27 1.4E-31 166.7 17.6 161 1-172 4-167 (205)
18 PLN02817 glutathione dehydroge 100.0 8.1E-27 1.7E-31 171.2 17.3 145 7-172 70-214 (265)
19 TIGR02182 GRXB Glutaredoxin, G 99.9 5.7E-27 1.2E-31 167.3 13.3 162 3-174 1-184 (209)
20 KOG1695 Glutathione S-transfer 99.9 1E-25 2.2E-30 157.8 14.4 164 2-173 4-168 (206)
21 KOG4420 Uncharacterized conser 99.9 8.2E-25 1.8E-29 154.1 13.1 175 2-176 27-255 (325)
22 KOG1422 Intracellular Cl- chan 99.9 2E-21 4.4E-26 133.2 12.4 148 9-172 20-168 (221)
23 cd03052 GST_N_GDAP1 GST_N fami 99.9 5.4E-22 1.2E-26 118.4 8.0 73 2-74 1-73 (73)
24 cd03048 GST_N_Ure2p_like GST_N 99.9 8.8E-22 1.9E-26 120.1 8.9 77 1-78 1-80 (81)
25 cd03041 GST_N_2GST_N GST_N fam 99.9 6.8E-22 1.5E-26 119.4 7.3 75 1-77 1-77 (77)
26 PF13417 GST_N_3: Glutathione 99.9 1E-21 2.2E-26 118.1 7.9 74 4-80 1-74 (75)
27 cd03045 GST_N_Delta_Epsilon GS 99.9 3.5E-21 7.5E-26 115.5 8.1 74 2-75 1-74 (74)
28 cd03050 GST_N_Theta GST_N fami 99.9 5.7E-21 1.2E-25 115.1 8.7 76 2-77 1-76 (76)
29 cd03053 GST_N_Phi GST_N family 99.8 8.7E-21 1.9E-25 114.3 8.4 75 2-76 2-76 (76)
30 cd03056 GST_N_4 GST_N family, 99.8 1.7E-20 3.7E-25 112.1 7.9 73 2-74 1-73 (73)
31 PLN02907 glutamate-tRNA ligase 99.8 1.1E-19 2.4E-24 148.5 15.2 128 2-171 3-131 (722)
32 cd03059 GST_N_SspA GST_N famil 99.8 2.4E-20 5.1E-25 111.5 8.2 73 2-77 1-73 (73)
33 cd03061 GST_N_CLIC GST_N famil 99.8 2.9E-20 6.2E-25 114.2 8.2 70 8-80 20-89 (91)
34 cd03051 GST_N_GTT2_like GST_N 99.8 2.4E-20 5.1E-25 111.7 7.4 73 2-74 1-74 (74)
35 cd03042 GST_N_Zeta GST_N famil 99.8 3.6E-20 7.7E-25 110.7 8.0 73 2-74 1-73 (73)
36 cd03058 GST_N_Tau GST_N family 99.8 4.3E-20 9.4E-25 110.7 8.2 73 2-77 1-74 (74)
37 cd03047 GST_N_2 GST_N family, 99.8 3.9E-20 8.5E-25 110.6 7.9 73 2-74 1-73 (73)
38 cd03057 GST_N_Beta GST_N famil 99.8 6.1E-20 1.3E-24 110.9 8.5 76 2-78 1-77 (77)
39 cd03046 GST_N_GTT1_like GST_N 99.8 9E-20 1.9E-24 109.8 8.7 76 2-78 1-76 (76)
40 PF02798 GST_N: Glutathione S- 99.8 2.6E-19 5.6E-24 107.7 8.5 74 2-75 1-76 (76)
41 cd03044 GST_N_EF1Bgamma GST_N 99.8 2E-19 4.4E-24 108.0 7.8 73 2-75 1-74 (75)
42 cd03080 GST_N_Metaxin_like GST 99.8 3.5E-19 7.5E-24 107.0 7.7 68 1-78 1-75 (75)
43 cd03076 GST_N_Pi GST_N family, 99.8 2.1E-19 4.5E-24 107.4 6.6 72 2-76 2-73 (73)
44 cd03060 GST_N_Omega_like GST_N 99.8 3.9E-19 8.4E-24 105.6 7.6 68 3-73 2-70 (71)
45 cd03055 GST_N_Omega GST_N fami 99.8 5.8E-19 1.2E-23 109.4 7.5 71 1-74 18-89 (89)
46 cd03039 GST_N_Sigma_like GST_N 99.8 3.7E-19 8E-24 106.1 6.3 72 2-75 1-72 (72)
47 cd03037 GST_N_GRX2 GST_N famil 99.8 4.9E-19 1.1E-23 105.2 6.8 70 2-75 1-71 (71)
48 cd03038 GST_N_etherase_LigE GS 99.8 1.1E-18 2.5E-23 107.0 7.6 70 8-78 14-84 (84)
49 PF13409 GST_N_2: Glutathione 99.8 1.5E-18 3.3E-23 102.7 7.3 68 9-76 1-70 (70)
50 cd03075 GST_N_Mu GST_N family, 99.8 2E-18 4.3E-23 105.3 7.9 75 3-77 2-82 (82)
51 cd03049 GST_N_3 GST_N family, 99.8 1.5E-18 3.2E-23 103.7 6.9 70 2-74 1-73 (73)
52 cd03077 GST_N_Alpha GST_N fami 99.7 1E-17 2.2E-22 101.5 7.8 71 2-78 2-77 (79)
53 cd03040 GST_N_mPGES2 GST_N fam 99.7 1.2E-17 2.6E-22 100.8 7.3 71 2-77 2-76 (77)
54 COG2999 GrxB Glutaredoxin 2 [P 99.7 6.3E-17 1.4E-21 108.4 10.5 161 2-172 1-183 (215)
55 KOG3029 Glutathione S-transfer 99.7 1.2E-16 2.6E-21 114.4 12.6 167 2-174 91-333 (370)
56 cd03043 GST_N_1 GST_N family, 99.7 3.3E-17 7.2E-22 97.7 7.6 68 6-74 6-73 (73)
57 cd00570 GST_N_family Glutathio 99.7 1.1E-16 2.3E-21 94.4 7.6 71 2-74 1-71 (71)
58 cd03054 GST_N_Metaxin GST_N fa 99.6 6.7E-16 1.4E-20 91.9 7.0 58 9-76 15-72 (72)
59 KOG4244 Failed axon connection 99.6 1.3E-14 2.9E-19 103.3 12.3 152 8-173 59-246 (281)
60 COG0435 ECM4 Predicted glutath 99.6 5.3E-14 1.1E-18 100.8 10.3 160 2-171 52-246 (324)
61 KOG3027 Mitochondrial outer me 99.5 1.9E-12 4.1E-17 89.1 14.3 157 8-177 32-224 (257)
62 cd03079 GST_N_Metaxin2 GST_N f 99.5 1.5E-13 3.3E-18 81.2 7.1 60 8-76 15-74 (74)
63 KOG2903 Predicted glutathione 99.4 7.2E-13 1.6E-17 94.2 7.1 161 2-171 38-246 (319)
64 cd03189 GST_C_GTT1_like GST_C 99.3 2.5E-11 5.4E-16 79.0 8.8 90 84-175 2-99 (119)
65 TIGR02190 GlrX-dom Glutaredoxi 99.3 2.1E-11 4.6E-16 73.7 6.3 71 1-74 9-79 (79)
66 cd03191 GST_C_Zeta GST_C famil 99.3 8.4E-11 1.8E-15 76.8 9.6 89 88-176 2-92 (121)
67 PRK10638 glutaredoxin 3; Provi 99.2 3.7E-11 8.1E-16 73.3 6.4 72 2-75 4-75 (83)
68 cd03182 GST_C_GTT2_like GST_C 99.2 1.6E-10 3.4E-15 74.9 8.3 89 86-176 1-95 (117)
69 cd03178 GST_C_Ure2p_like GST_C 99.2 1.2E-10 2.6E-15 75.1 7.4 85 89-175 1-85 (113)
70 cd03029 GRX_hybridPRX5 Glutare 99.2 1.2E-10 2.6E-15 69.1 6.8 71 1-74 2-72 (72)
71 cd03078 GST_N_Metaxin1_like GS 99.2 1.6E-10 3.5E-15 68.6 6.5 59 8-76 14-72 (73)
72 cd03186 GST_C_SspA GST_N famil 99.2 2.5E-10 5.5E-15 72.9 7.8 79 88-175 2-80 (107)
73 cd03181 GST_C_EFB1gamma GST_C 99.1 2.5E-10 5.5E-15 74.6 7.9 81 90-172 2-82 (123)
74 cd03180 GST_C_2 GST_C family, 99.1 4.8E-10 1E-14 71.8 8.7 81 89-171 2-84 (110)
75 cd03188 GST_C_Beta GST_C famil 99.1 1.8E-10 3.9E-15 74.2 6.6 85 89-175 2-88 (114)
76 KOG3028 Translocase of outer m 99.1 1.7E-08 3.6E-13 74.2 16.7 155 9-175 16-208 (313)
77 cd03179 GST_C_1 GST_C family, 99.1 1.8E-10 4E-15 73.1 5.6 86 89-176 2-89 (105)
78 cd03187 GST_C_Phi GST_C family 99.1 8E-10 1.7E-14 71.7 8.3 82 89-172 2-87 (118)
79 PF13410 GST_C_2: Glutathione 99.1 5E-10 1.1E-14 65.8 6.4 50 124-175 2-51 (69)
80 cd03196 GST_C_5 GST_C family, 99.1 7.1E-10 1.5E-14 71.8 7.0 81 86-172 3-83 (115)
81 cd03177 GST_C_Delta_Epsilon GS 99.1 1.1E-09 2.4E-14 71.2 7.8 80 89-173 2-81 (118)
82 TIGR02196 GlrX_YruB Glutaredox 99.1 5.1E-10 1.1E-14 66.3 5.7 71 1-73 1-73 (74)
83 cd03200 GST_C_JTV1 GST_C famil 99.1 6.6E-10 1.4E-14 69.6 6.2 76 70-171 1-76 (96)
84 cd03185 GST_C_Tau GST_C family 99.1 9.2E-10 2E-14 72.3 7.3 76 88-172 2-77 (126)
85 cd03190 GST_C_ECM4_like GST_C 99.0 3E-09 6.5E-14 71.5 8.5 76 88-171 3-78 (142)
86 cd03027 GRX_DEP Glutaredoxin ( 99.0 1.4E-09 3E-14 64.6 5.8 68 2-71 3-70 (73)
87 cd03184 GST_C_Omega GST_C fami 99.0 1.6E-09 3.5E-14 71.1 6.3 76 89-173 2-77 (124)
88 cd03183 GST_C_Theta GST_C fami 98.9 5.7E-09 1.2E-13 68.6 7.8 85 90-175 2-91 (126)
89 cd00299 GST_C_family Glutathio 98.9 2E-09 4.4E-14 67.4 5.1 80 94-175 2-81 (100)
90 PRK10329 glutaredoxin-like pro 98.9 2.6E-09 5.7E-14 64.7 5.2 61 1-64 2-62 (81)
91 cd03195 GST_C_4 GST_C family, 98.9 3.1E-09 6.8E-14 68.7 5.1 86 88-176 2-88 (114)
92 PF14497 GST_C_3: Glutathione 98.9 2.6E-09 5.6E-14 67.3 4.3 51 123-173 30-80 (99)
93 cd02066 GRX_family Glutaredoxi 98.9 7.1E-09 1.5E-13 60.9 5.7 69 2-72 2-70 (72)
94 cd02976 NrdH NrdH-redoxin (Nrd 98.9 5.4E-09 1.2E-13 61.7 4.9 62 2-65 2-63 (73)
95 cd03206 GST_C_7 GST_C family, 98.8 1.6E-08 3.4E-13 63.8 6.6 75 94-173 2-76 (100)
96 cd03192 GST_C_Sigma_like GST_C 98.8 1.4E-08 3E-13 64.4 6.4 85 89-175 2-86 (104)
97 PF00043 GST_C: Glutathione S- 98.8 1.2E-08 2.6E-13 63.5 5.9 52 123-176 23-74 (95)
98 COG0695 GrxC Glutaredoxin and 98.8 1.9E-08 4.1E-13 60.7 5.9 70 1-71 2-72 (80)
99 cd03418 GRX_GRXb_1_3_like Glut 98.8 2E-08 4.2E-13 59.9 5.9 71 2-74 2-73 (75)
100 PF14834 GST_C_4: Glutathione 98.8 5.5E-08 1.2E-12 61.4 8.0 89 86-176 1-89 (117)
101 TIGR02181 GRX_bact Glutaredoxi 98.7 3E-08 6.5E-13 59.7 5.7 72 2-75 1-72 (79)
102 cd03204 GST_C_GDAP1 GST_C fami 98.7 3.8E-08 8.3E-13 63.0 6.4 55 122-176 23-85 (111)
103 cd03210 GST_C_Pi GST_C family, 98.7 5.6E-08 1.2E-12 63.9 7.3 49 125-173 32-81 (126)
104 cd03208 GST_C_Alpha GST_C fami 98.7 5E-08 1.1E-12 65.1 6.8 47 127-173 38-84 (137)
105 cd03209 GST_C_Mu GST_C family, 98.7 6.5E-08 1.4E-12 63.1 7.3 77 89-173 2-78 (121)
106 TIGR02200 GlrX_actino Glutared 98.7 5.1E-08 1.1E-12 58.2 5.6 70 2-73 2-75 (77)
107 cd03207 GST_C_8 GST_C family, 98.7 2.1E-08 4.5E-13 63.5 3.6 49 125-175 27-75 (103)
108 cd03193 GST_C_Metaxin GST_C fa 98.7 9E-08 2E-12 58.8 6.4 44 128-173 19-62 (88)
109 PF00462 Glutaredoxin: Glutare 98.7 2.4E-08 5.2E-13 56.9 3.4 60 2-63 1-60 (60)
110 cd03194 GST_C_3 GST_C family, 98.7 4.1E-08 8.9E-13 63.4 4.9 51 125-176 38-89 (114)
111 TIGR02194 GlrX_NrdH Glutaredox 98.7 4.8E-08 1E-12 57.8 4.7 57 2-61 1-57 (72)
112 TIGR02183 GRXA Glutaredoxin, G 98.7 1.6E-07 3.4E-12 57.6 6.9 75 2-78 2-83 (86)
113 PRK11200 grxA glutaredoxin 1; 98.7 1.3E-07 2.8E-12 57.8 6.5 75 2-78 3-84 (85)
114 cd03198 GST_C_CLIC GST_C famil 98.6 9.9E-08 2.2E-12 63.1 6.1 51 122-172 23-87 (134)
115 cd03419 GRX_GRXh_1_2_like Glut 98.6 2.4E-07 5.1E-12 56.1 6.4 74 2-75 2-76 (82)
116 TIGR02189 GlrX-like_plant Glut 98.6 2.2E-07 4.8E-12 58.4 5.9 72 2-73 10-82 (99)
117 cd03202 GST_C_etherase_LigE GS 98.6 1.9E-07 4.1E-12 61.3 5.7 47 126-174 56-102 (124)
118 PHA03050 glutaredoxin; Provisi 98.5 5.2E-07 1.1E-11 57.6 6.1 70 2-71 15-88 (108)
119 cd03211 GST_C_Metaxin2 GST_C f 98.5 8.1E-07 1.8E-11 58.4 7.1 49 124-174 53-101 (126)
120 cd03203 GST_C_Lambda GST_C fam 98.5 1.3E-06 2.9E-11 56.9 7.8 73 86-172 1-74 (120)
121 cd03205 GST_C_6 GST_C family, 98.5 1E-06 2.2E-11 55.2 6.8 50 119-173 28-77 (98)
122 cd03201 GST_C_DHAR GST_C famil 98.4 1.5E-06 3.3E-11 56.7 7.3 45 127-172 29-73 (121)
123 PF10568 Tom37: Outer mitochon 98.3 2.9E-06 6.3E-11 50.0 6.5 56 8-73 12-71 (72)
124 TIGR02180 GRX_euk Glutaredoxin 98.3 2.1E-06 4.5E-11 52.1 6.1 74 2-75 1-77 (84)
125 cd03212 GST_C_Metaxin1_3 GST_C 98.3 2.4E-06 5.1E-11 57.0 6.4 49 124-174 60-108 (137)
126 TIGR00365 monothiol glutaredox 98.3 2.8E-06 6E-11 53.2 6.1 64 8-73 25-88 (97)
127 cd03197 GST_C_mPGES2 GST_C fam 98.2 4.5E-06 9.8E-11 55.9 6.2 47 127-174 78-124 (149)
128 cd03028 GRX_PICOT_like Glutare 98.2 6E-06 1.3E-10 51.0 6.1 64 8-73 21-84 (90)
129 cd03031 GRX_GRX_like Glutaredo 98.0 2.4E-05 5.3E-10 52.6 6.0 70 2-73 2-81 (147)
130 PRK12759 bifunctional gluaredo 97.8 6.1E-05 1.3E-09 59.2 6.2 67 2-71 4-79 (410)
131 PRK01655 spxA transcriptional 97.7 4.3E-05 9.2E-10 50.5 3.7 33 1-33 1-33 (131)
132 cd03032 ArsC_Spx Arsenate Redu 97.7 5.9E-05 1.3E-09 48.7 3.6 33 1-33 1-33 (115)
133 PRK10824 glutaredoxin-4; Provi 97.6 0.00027 5.9E-09 45.5 6.0 64 8-73 28-91 (115)
134 cd02973 TRX_GRX_like Thioredox 97.6 0.00031 6.6E-09 40.5 5.5 58 1-64 2-64 (67)
135 PRK13344 spxA transcriptional 97.5 0.00012 2.5E-09 48.5 3.7 33 1-33 1-33 (132)
136 PRK12559 transcriptional regul 97.5 0.00013 2.8E-09 48.2 3.8 34 1-34 1-34 (131)
137 KOG1752 Glutaredoxin and relat 97.4 0.00073 1.6E-08 42.7 6.2 73 3-75 17-90 (104)
138 cd03036 ArsC_like Arsenate Red 97.3 0.00028 6.1E-09 45.3 3.1 33 2-34 1-33 (111)
139 PTZ00062 glutaredoxin; Provisi 97.3 0.00099 2.1E-08 47.4 6.0 64 8-73 126-189 (204)
140 cd02977 ArsC_family Arsenate R 97.2 0.00044 9.6E-09 43.8 3.4 32 2-33 1-32 (105)
141 cd03030 GRX_SH3BGR Glutaredoxi 97.2 0.002 4.3E-08 39.8 6.0 68 2-71 2-79 (92)
142 PRK10853 putative reductase; P 97.2 0.00054 1.2E-08 44.4 3.6 33 1-33 1-33 (118)
143 COG1393 ArsC Arsenate reductas 97.0 0.00091 2E-08 43.2 3.6 33 1-33 2-34 (117)
144 COG4545 Glutaredoxin-related p 96.9 0.0032 7E-08 36.7 4.6 64 1-64 3-77 (85)
145 TIGR01617 arsC_related transcr 96.9 0.0013 2.9E-08 42.5 3.3 32 2-33 1-32 (117)
146 PHA02125 thioredoxin-like prot 96.8 0.0054 1.2E-07 36.3 5.2 52 1-58 1-52 (75)
147 cd03035 ArsC_Yffb Arsenate Red 96.7 0.002 4.3E-08 40.9 3.3 32 2-33 1-32 (105)
148 cd03033 ArsC_15kD Arsenate Red 96.6 0.0025 5.4E-08 41.0 3.4 32 2-33 2-33 (113)
149 PRK10026 arsenate reductase; P 96.6 0.0026 5.6E-08 42.5 3.4 33 1-33 3-35 (141)
150 TIGR00412 redox_disulf_2 small 96.5 0.02 4.4E-07 33.9 6.3 54 2-63 3-60 (76)
151 KOG1147 Glutamyl-tRNA syntheta 96.4 0.0048 1E-07 49.4 4.0 85 58-170 43-128 (712)
152 TIGR00411 redox_disulf_1 small 96.3 0.02 4.4E-07 34.0 5.8 57 1-61 2-62 (82)
153 PF05768 DUF836: Glutaredoxin- 96.0 0.033 7.1E-07 33.4 5.7 54 2-60 2-57 (81)
154 COG0278 Glutaredoxin-related p 96.0 0.037 8E-07 34.4 5.6 68 7-75 27-94 (105)
155 TIGR01616 nitro_assoc nitrogen 95.9 0.011 2.4E-07 38.7 3.5 32 2-33 3-34 (126)
156 PF04399 Glutaredoxin2_C: Glut 95.8 0.075 1.6E-06 35.1 7.1 43 127-172 58-100 (132)
157 cd03026 AhpF_NTD_C TRX-GRX-lik 95.7 0.047 1E-06 33.4 5.5 57 2-64 16-77 (89)
158 cd03034 ArsC_ArsC Arsenate Red 95.6 0.016 3.5E-07 37.1 3.3 32 2-33 1-32 (112)
159 TIGR00014 arsC arsenate reduct 95.5 0.018 3.9E-07 37.1 3.3 32 2-33 1-32 (114)
160 PF11287 DUF3088: Protein of u 95.0 0.11 2.3E-06 33.0 5.5 67 9-78 23-108 (112)
161 PF11801 Tom37_C: Tom37 C-term 94.8 0.12 2.5E-06 35.7 5.8 41 132-174 112-156 (168)
162 PF04908 SH3BGR: SH3-binding, 94.4 0.12 2.5E-06 32.4 4.5 69 2-72 3-86 (99)
163 cd01659 TRX_superfamily Thiore 94.1 0.099 2.2E-06 28.4 3.7 54 2-58 1-59 (69)
164 cd03199 GST_C_GRX2 GST_C famil 94.0 0.083 1.8E-06 34.7 3.5 42 128-172 60-101 (128)
165 PF13192 Thioredoxin_3: Thiore 93.8 0.4 8.7E-06 28.2 5.9 56 3-66 4-63 (76)
166 PF03960 ArsC: ArsC family; I 90.6 0.26 5.6E-06 31.4 2.5 29 5-33 1-29 (110)
167 cd02947 TRX_family TRX family; 88.3 3 6.5E-05 24.4 6.0 53 3-61 15-74 (93)
168 cd02949 TRX_NTR TRX domain, no 87.1 2.3 5.1E-05 26.0 5.0 58 2-63 17-80 (97)
169 TIGR03143 AhpF_homolog putativ 87.0 2 4.3E-05 35.6 5.9 57 2-64 480-541 (555)
170 TIGR01295 PedC_BrcD bacterioci 86.5 5 0.00011 26.0 6.5 31 3-33 28-62 (122)
171 COG3019 Predicted metal-bindin 84.7 4.8 0.0001 26.8 5.6 70 2-77 28-104 (149)
172 PF09635 MetRS-N: MetRS-N bind 84.4 0.99 2.2E-05 29.2 2.3 27 52-78 35-63 (122)
173 cd02953 DsbDgamma DsbD gamma f 84.3 1.9 4.2E-05 26.7 3.7 55 2-57 15-77 (104)
174 PRK15317 alkyl hydroperoxide r 82.1 1.8 3.9E-05 35.5 3.5 71 2-76 120-197 (517)
175 KOG2824 Glutaredoxin-related p 81.8 2.1 4.5E-05 31.8 3.4 59 12-72 149-211 (281)
176 TIGR03140 AhpF alkyl hydropero 80.8 1.7 3.7E-05 35.5 3.1 74 2-76 121-198 (515)
177 cd02989 Phd_like_TxnDC9 Phosdu 80.7 12 0.00026 23.8 6.8 57 4-64 28-89 (113)
178 KOG0911 Glutaredoxin-related p 80.7 4.3 9.3E-05 29.3 4.6 67 7-75 151-217 (227)
179 cd02975 PfPDO_like_N Pyrococcu 80.3 5.4 0.00012 25.4 4.7 50 5-58 29-81 (113)
180 PF00085 Thioredoxin: Thioredo 78.8 12 0.00026 22.6 8.1 70 2-75 21-102 (103)
181 TIGR02187 GlrX_arch Glutaredox 76.7 12 0.00026 26.8 6.1 54 2-59 137-193 (215)
182 COG5494 Predicted thioredoxin/ 75.2 9.2 0.0002 27.5 4.8 58 1-63 12-70 (265)
183 PTZ00051 thioredoxin; Provisio 74.5 13 0.00029 22.4 5.2 56 3-62 23-83 (98)
184 cd02963 TRX_DnaJ TRX domain, D 68.6 26 0.00057 22.0 5.8 56 3-62 29-91 (111)
185 PF04134 DUF393: Protein of un 67.3 21 0.00045 22.5 5.0 72 4-76 1-77 (114)
186 cd02984 TRX_PICOT TRX domain, 66.8 25 0.00054 21.0 6.0 57 3-63 19-81 (97)
187 PHA03075 glutaredoxin-like pro 63.5 13 0.00028 24.0 3.3 66 2-77 5-70 (123)
188 TIGR02681 phage_pRha phage reg 61.5 11 0.00024 23.9 2.8 26 53-78 2-28 (108)
189 TIGR02187 GlrX_arch Glutaredox 61.3 35 0.00076 24.4 5.8 53 3-57 24-82 (215)
190 PHA02278 thioredoxin-like prot 60.0 40 0.00087 21.1 6.8 59 5-63 21-85 (103)
191 PF06110 DUF953: Eukaryotic pr 58.1 34 0.00074 22.2 4.7 61 6-66 34-105 (119)
192 cd02951 SoxW SoxW family; SoxW 58.1 36 0.00077 21.7 4.9 17 2-18 18-34 (125)
193 PRK09381 trxA thioredoxin; Pro 57.5 43 0.00093 20.6 6.6 56 4-63 27-88 (109)
194 KOG3425 Uncharacterized conser 54.1 60 0.0013 21.2 5.9 69 6-75 41-121 (128)
195 cd02952 TRP14_like Human TRX-r 53.1 60 0.0013 21.0 5.9 50 8-57 38-95 (119)
196 PRK09266 hypothetical protein; 51.8 15 0.00033 27.2 2.6 60 19-78 200-259 (266)
197 cd02997 PDI_a_PDIR PDIa family 51.3 28 0.0006 21.0 3.5 53 3-57 22-80 (104)
198 cd04911 ACT_AKiii-YclM-BS_1 AC 51.0 20 0.00043 21.2 2.5 27 8-34 13-39 (76)
199 cd03003 PDI_a_ERdj5_N PDIa fam 50.8 55 0.0012 19.8 5.2 50 4-57 24-77 (101)
200 PF04705 TSNR_N: Thiostrepton- 50.5 1.6 3.4E-05 27.2 -2.3 35 2-36 51-85 (115)
201 cd02956 ybbN ybbN protein fami 49.3 55 0.0012 19.5 6.2 55 4-62 18-78 (96)
202 cd02962 TMX2 TMX2 family; comp 49.1 81 0.0018 21.3 6.3 57 4-64 53-122 (152)
203 cd03020 DsbA_DsbC_DsbG DsbA fa 48.8 22 0.00048 24.9 3.0 21 2-22 81-101 (197)
204 cd02954 DIM1 Dim1 family; Dim1 48.5 71 0.0015 20.5 5.4 55 5-63 21-81 (114)
205 PF14595 Thioredoxin_9: Thiore 47.3 18 0.00039 23.7 2.2 52 3-57 46-102 (129)
206 cd02959 ERp19 Endoplasmic reti 47.2 74 0.0016 20.3 5.1 59 4-64 25-91 (117)
207 PF09413 DUF2007: Domain of un 47.0 16 0.00034 20.6 1.7 31 3-33 2-32 (67)
208 KOG2501 Thioredoxin, nucleored 47.0 31 0.00067 23.6 3.3 35 3-37 37-79 (157)
209 cd02955 SSP411 TRX domain, SSP 45.7 79 0.0017 20.6 5.0 63 4-66 21-97 (124)
210 cd02957 Phd_like Phosducin (Ph 45.4 41 0.0009 21.1 3.6 58 3-65 29-91 (113)
211 PF04564 U-box: U-box domain; 45.4 60 0.0013 18.7 4.9 27 51-78 14-40 (73)
212 COG3011 Predicted thiol-disulf 45.0 88 0.0019 20.9 5.1 75 1-77 9-87 (137)
213 PF13728 TraF: F plasmid trans 44.7 75 0.0016 22.9 5.2 31 3-33 125-159 (215)
214 PF01323 DSBA: DSBA-like thior 43.2 38 0.00083 23.3 3.5 34 2-35 2-40 (193)
215 PRK11657 dsbG disulfide isomer 42.9 31 0.00067 25.5 3.1 20 2-21 121-140 (251)
216 cd03024 DsbA_FrnE DsbA family, 40.3 35 0.00075 23.8 2.9 33 2-34 1-41 (201)
217 cd02948 TRX_NDPK TRX domain, T 40.3 39 0.00086 20.7 2.9 56 3-63 22-84 (102)
218 PF13098 Thioredoxin_2: Thiore 40.2 24 0.00053 21.8 1.9 33 3-35 10-49 (112)
219 COG5515 Uncharacterized conser 39.6 21 0.00046 20.1 1.3 21 2-22 3-27 (70)
220 cd02972 DsbA_family DsbA famil 38.2 35 0.00076 19.9 2.4 22 2-23 1-22 (98)
221 cd03004 PDI_a_ERdj5_C PDIa fam 37.5 75 0.0016 19.3 3.9 51 3-57 24-78 (104)
222 PRK10996 thioredoxin 2; Provis 37.1 1.2E+02 0.0026 19.9 8.6 57 3-63 57-119 (139)
223 TIGR01162 purE phosphoribosyla 35.8 34 0.00073 23.4 2.1 36 10-45 11-46 (156)
224 cd02994 PDI_a_TMX PDIa family, 35.4 1E+02 0.0022 18.5 5.2 51 3-57 21-76 (101)
225 PRK10877 protein disulfide iso 35.0 69 0.0015 23.4 3.8 21 2-22 111-131 (232)
226 cd02965 HyaE HyaE family; HyaE 34.3 1.3E+02 0.0028 19.3 4.5 58 4-65 33-98 (111)
227 cd02996 PDI_a_ERp44 PDIa famil 34.1 1.1E+02 0.0024 18.7 4.3 54 4-61 24-89 (108)
228 PF00731 AIRC: AIR carboxylase 33.1 48 0.001 22.5 2.5 28 9-36 12-39 (150)
229 cd02987 Phd_like_Phd Phosducin 33.1 1.1E+02 0.0023 21.3 4.3 57 4-65 89-150 (175)
230 PRK14476 nitrogenase molybdenu 32.9 2.7E+02 0.0059 22.7 7.5 36 67-102 246-281 (455)
231 cd02999 PDI_a_ERp44_like PDIa 32.7 43 0.00094 20.6 2.2 51 4-57 24-77 (100)
232 cd02978 KaiB_like KaiB-like fa 32.4 1.1E+02 0.0024 17.9 3.7 52 2-57 4-60 (72)
233 PF09314 DUF1972: Domain of un 32.3 47 0.001 23.4 2.5 20 59-78 154-173 (185)
234 cd02950 TxlA TRX-like protein 31.9 1.5E+02 0.0033 19.5 6.1 58 4-63 26-90 (142)
235 cd03002 PDI_a_MPD1_like PDI fa 31.8 79 0.0017 19.3 3.3 53 3-57 23-79 (109)
236 cd00449 PLPDE_IV PyridoxaL 5'- 30.8 52 0.0011 24.0 2.7 57 19-75 196-254 (256)
237 TIGR01068 thioredoxin thioredo 30.7 1.2E+02 0.0026 17.9 7.9 54 4-61 20-79 (101)
238 TIGR01126 pdi_dom protein disu 30.6 62 0.0013 19.3 2.6 52 2-57 17-74 (102)
239 cd02985 TRX_CDSP32 TRX family, 30.4 1.1E+02 0.0024 18.7 3.7 59 4-63 21-84 (103)
240 PTZ00102 disulphide isomerase; 30.4 2.9E+02 0.0063 22.2 7.6 72 3-78 54-139 (477)
241 cd02993 PDI_a_APS_reductase PD 29.9 91 0.002 19.3 3.3 52 3-57 26-83 (109)
242 cd02961 PDI_a_family Protein D 29.7 1.2E+02 0.0026 17.6 5.1 52 2-57 19-76 (101)
243 cd08200 catalase_peroxidase_2 29.2 1.1E+02 0.0025 23.3 4.1 39 133-171 74-112 (297)
244 PRK06092 4-amino-4-deoxychoris 29.1 75 0.0016 23.5 3.2 57 19-76 208-264 (268)
245 TIGR01764 excise DNA binding d 28.8 86 0.0019 15.7 3.3 25 50-74 24-48 (49)
246 cd03005 PDI_a_ERp46 PDIa famil 28.3 1.4E+02 0.003 17.8 5.3 51 3-57 21-78 (102)
247 cd03021 DsbA_GSTK DsbA family, 28.2 84 0.0018 22.2 3.3 33 2-34 3-39 (209)
248 cd01557 BCAT_beta_family BCAT_ 27.2 40 0.00087 25.2 1.5 57 19-75 211-271 (279)
249 PRK15371 effector protein YopJ 26.4 1.9E+02 0.0041 22.1 4.8 42 127-171 22-63 (287)
250 cd03000 PDI_a_TMX3 PDIa family 26.4 1.6E+02 0.0034 17.9 4.7 51 3-57 20-77 (104)
251 PF08534 Redoxin: Redoxin; In 26.0 92 0.002 20.3 3.0 54 4-59 35-93 (146)
252 cd02966 TlpA_like_family TlpA- 25.8 34 0.00074 20.6 0.8 19 3-21 24-42 (116)
253 TIGR01285 nifN nitrogenase mol 25.6 3.6E+02 0.0078 21.8 7.5 14 67-80 246-259 (432)
254 PRK13356 aminotransferase; Pro 25.6 64 0.0014 24.2 2.4 56 19-75 221-276 (286)
255 cd02992 PDI_a_QSOX PDIa family 25.6 1E+02 0.0023 19.4 3.1 52 4-57 25-83 (114)
256 PF15471 TMEM171: Transmembran 25.5 1.1E+02 0.0024 23.0 3.4 45 128-172 73-121 (319)
257 PRK00293 dipZ thiol:disulfide 25.4 3.8E+02 0.0082 22.6 7.0 52 5-57 481-539 (571)
258 PF00392 GntR: Bacterial regul 25.4 1.3E+02 0.0028 16.6 3.3 28 135-164 4-32 (64)
259 PRK06606 branched-chain amino 24.9 65 0.0014 24.5 2.3 46 19-64 228-273 (306)
260 PF12728 HTH_17: Helix-turn-he 24.9 1.1E+02 0.0025 15.8 3.6 28 49-76 23-50 (51)
261 COG2975 Uncharacterized protei 24.8 1.4E+02 0.003 16.8 2.9 34 63-99 3-36 (64)
262 cd03006 PDI_a_EFP1_N PDIa fami 24.2 1.4E+02 0.003 19.0 3.4 51 3-57 34-89 (113)
263 PF15608 PELOTA_1: PELOTA RNA 24.2 1.3E+02 0.0029 18.8 3.2 25 6-30 62-86 (100)
264 TIGR03412 iscX_yfhJ FeS assemb 24.1 82 0.0018 17.9 2.0 17 63-79 2-18 (63)
265 cd02995 PDI_a_PDI_a'_C PDIa fa 24.0 45 0.00097 20.1 1.1 51 2-57 22-78 (104)
266 cd03022 DsbA_HCCA_Iso DsbA fam 23.9 96 0.0021 21.2 2.9 33 2-34 1-37 (192)
267 TIGR00198 cat_per_HPI catalase 23.7 1.8E+02 0.0039 25.3 4.7 38 132-175 121-158 (716)
268 cd02998 PDI_a_ERp38 PDIa famil 23.5 1E+02 0.0023 18.3 2.8 52 3-57 23-80 (105)
269 PF12062 HSNSD: heparan sulfat 23.5 1.1E+02 0.0025 24.9 3.4 50 3-67 64-118 (487)
270 COG0429 Predicted hydrolase of 23.4 3.5E+02 0.0075 21.3 5.8 65 6-82 86-150 (345)
271 PF12437 GSIII_N: Glutamine sy 22.7 2.2E+02 0.0048 19.6 4.2 37 136-177 24-60 (164)
272 PF01063 Aminotran_4: Aminotra 22.4 50 0.0011 23.6 1.2 60 16-76 171-230 (231)
273 cd00649 catalase_peroxidase_1 22.2 1.9E+02 0.004 23.3 4.3 41 129-175 108-148 (409)
274 KOG0190 Protein disulfide isom 22.1 3.3E+02 0.0071 22.6 5.7 71 4-78 48-133 (493)
275 PRK07544 branched-chain amino 22.1 79 0.0017 23.8 2.3 45 19-63 225-269 (292)
276 PRK07650 4-amino-4-deoxychoris 22.0 93 0.002 23.3 2.6 45 19-63 212-256 (283)
277 cd03572 ENTH_epsin_related ENT 22.0 2.4E+02 0.0052 18.4 6.6 41 64-109 34-74 (122)
278 smart00422 HTH_MERR helix_turn 21.9 1E+02 0.0022 17.1 2.3 22 156-177 38-59 (70)
279 PRK13703 conjugal pilus assemb 21.8 1.3E+02 0.0029 22.3 3.3 31 3-33 148-182 (248)
280 TIGR01121 D_amino_aminoT D-ami 21.6 85 0.0018 23.4 2.3 57 19-75 211-269 (276)
281 PF14811 TPD: Protein of unkno 21.3 55 0.0012 21.9 1.1 49 16-77 39-87 (139)
282 cd03011 TlpA_like_ScsD_MtbDsbE 21.2 39 0.00085 21.2 0.4 31 4-34 26-56 (123)
283 TIGR01130 ER_PDI_fam protein d 21.0 4.3E+02 0.0093 21.0 7.4 72 3-78 23-110 (462)
284 PF12972 NAGLU_C: Alpha-N-acet 20.9 3E+02 0.0065 20.6 5.1 31 123-154 122-152 (267)
285 TIGR02739 TraF type-F conjugat 20.9 1.4E+02 0.0031 22.3 3.3 31 3-33 155-189 (256)
286 COG0041 PurE Phosphoribosylcar 20.6 1.2E+02 0.0025 20.9 2.5 35 11-45 16-50 (162)
287 TIGR01122 ilvE_I branched-chai 20.6 90 0.0019 23.6 2.3 46 19-64 220-265 (298)
288 cd04763 HTH_MlrA-like Helix-Tu 20.3 1.2E+02 0.0026 16.9 2.3 22 156-177 38-59 (68)
289 PF00148 Oxidored_nitro: Nitro 20.0 1.5E+02 0.0034 23.2 3.6 137 11-176 158-295 (398)
No 1
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-37 Score=203.70 Aligned_cols=174 Identities=48% Similarity=0.785 Sum_probs=159.2
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCC-CCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHHhhCCCC
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKG-EQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQP 80 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~-~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~~~~~~~ 80 (177)
.+||.+..|.+++|||++|..|||+|+.+.|++..+ +....+|.+.||.++||+|++||.+++||.||++||++.||++
T Consensus 6 piLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeEt~P~p 85 (217)
T KOG0868|consen 6 PILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLEETYPDP 85 (217)
T ss_pred chhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHHhcCCCC
Confidence 369999999999999999999999999999999876 4557899999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHH
Q 030456 81 PLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLI 160 (177)
Q Consensus 81 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~a 160 (177)
+|+|.++..|+.++++...+.+.+.+.....+..+.+.+.. .....|+...+.+.+..||+.|..+.++|-+||++|+|
T Consensus 86 pLLP~d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l~ek~~-~~~~~W~q~~ItkGF~ALEklL~~~aGkycvGDevtiA 164 (217)
T KOG0868|consen 86 PLLPKDPHKRAKARAISLLIASGIQPLQNLSVLKMLNEKEP-GYGDQWAQHFITKGFTALEKLLKSHAGKYCVGDEVTIA 164 (217)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhccccc-chhhHHHHHHHHHhHHHHHHHHHHccCCcccCceeehh
Confidence 99999999999999999999999999998888887766542 33378888999999999999999888999999999999
Q ss_pred HHHHHHHHHHhhcCCC
Q 030456 161 CIWHRSFMQRSTGSTL 176 (177)
Q Consensus 161 Di~l~~~l~~~~~~~~ 176 (177)
|+.+.+.++.++.+.+
T Consensus 165 Dl~L~pqv~nA~rf~v 180 (217)
T KOG0868|consen 165 DLCLPPQVYNANRFHV 180 (217)
T ss_pred hhccchhhhhhhhccc
Confidence 9999999999877654
No 2
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=100.00 E-value=4.4e-36 Score=214.74 Aligned_cols=164 Identities=25% Similarity=0.385 Sum_probs=139.6
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHHhhCCCC
Q 030456 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQP 80 (177)
Q Consensus 1 m~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~~~~~~~ 80 (177)
||+||+++.||+|++++++|+++|++|+.+.++.. +++++|+++||.|+||+|++||.+++||.||++||+++||+.
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~---~~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL~~~~~~~ 86 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKD---NLPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLDERFPHP 86 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcc---cCCHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHHHHhCCCC
Confidence 79999999999999999999999999999999864 467899999999999999999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHH
Q 030456 81 PLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLI 160 (177)
Q Consensus 81 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~a 160 (177)
+++|.++.+++.++.|..++...+..... .. ....+...+...+.+.+.+..+|++|++ ++|++|+++|+|
T Consensus 87 ~l~p~~~~~ra~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~l~~~l~~le~~L~~--~~~l~G~~~t~A 157 (211)
T PRK09481 87 PLMPVYPVARGESRLMMHRIEKDWYSLMN----KI---VNGSASEADAARKQLREELLAIAPVFGE--KPYFMSEEFSLV 157 (211)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHH----HH---hcCCHHHHHHHHHHHHHHHHHHHHHhcc--CCcccCCCccHH
Confidence 89999999999999998877653322211 11 1122344566778899999999999987 899999999999
Q ss_pred HHHHHHHHHHhhcCCC
Q 030456 161 CIWHRSFMQRSTGSTL 176 (177)
Q Consensus 161 Di~l~~~l~~~~~~~~ 176 (177)
|+++++.+.++...|+
T Consensus 158 D~~l~~~~~~~~~~~~ 173 (211)
T PRK09481 158 DCYLAPLLWRLPVLGI 173 (211)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999988765553
No 3
>PRK15113 glutathione S-transferase; Provisional
Probab=100.00 E-value=1.3e-35 Score=212.72 Aligned_cols=173 Identities=27% Similarity=0.315 Sum_probs=141.0
Q ss_pred CeeecccC--CCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHHhhCC
Q 030456 1 MLKLFSYW--RSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYP 78 (177)
Q Consensus 1 m~~Ly~~~--~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~~~~~ 78 (177)
||+||+.+ .||+|++++++|+++||+|+.+.+++.++++..++|++.||.|+||+|++||.+++||.+|++||+++++
T Consensus 5 ~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~~~~~ 84 (214)
T PRK15113 5 AITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLEERFA 84 (214)
T ss_pred eEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHHHHHcC
Confidence 89999875 7999999999999999999999999988877889999999999999999999999999999999999998
Q ss_pred CCC---CCCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccC
Q 030456 79 QPP---LLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGD 155 (177)
Q Consensus 79 ~~~---l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~ 155 (177)
+.. ++|.++.+++++++|+.++...+.+................+...+...+.+.+.++.+|++|++ ++.|++|+
T Consensus 85 ~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~~l~G~ 163 (214)
T PRK15113 85 PPAWERIYPADLQARARARQIQAWLRSDLMPLREERPTDVVFAGAKKAPLSEAGKAAAEKLFAVAERLLAP-GQPNLFGE 163 (214)
T ss_pred CCCccccCCCCHHHHHHHHHHHHHHHhhhHHHhccCccchhccCCCCCcccHHHHHHHHHHHHHHHHHHhc-CCCEeeCC
Confidence 765 99999999999999999987654432211000000011112333456677789999999999985 25799996
Q ss_pred CchHHHHHHHHHHHHhhcCC
Q 030456 156 EVFLICIWHRSFMQRSTGST 175 (177)
Q Consensus 156 ~~t~aDi~l~~~l~~~~~~~ 175 (177)
+|+|||++++.+.++...+
T Consensus 164 -~TlADi~l~~~l~~~~~~~ 182 (214)
T PRK15113 164 -WCIADTDLALMLNRLVLHG 182 (214)
T ss_pred -ccHHHHHHHHHHHHHHHcC
Confidence 9999999999998876554
No 4
>PLN02473 glutathione S-transferase
Probab=100.00 E-value=5.3e-34 Score=204.49 Aligned_cols=169 Identities=27% Similarity=0.318 Sum_probs=142.1
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHHhhCCCC-
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQP- 80 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~~~~~~~- 80 (177)
||||+++.||+++|++++|+++|++|+.+.++...+++.++++.++||.|+||+|++||.+++||.+|++||++++|+.
T Consensus 3 ~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL~~~~~~~~ 82 (214)
T PLN02473 3 VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARYYATKYADQG 82 (214)
T ss_pred eEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHHHHHHcCCcC
Confidence 6999999999999999999999999999999988777889999999999999999999999999999999999999743
Q ss_pred -CCCCCCHHHHHHHHHHHHHHhccccchhHHHHHH-HHH---hhcCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccC
Q 030456 81 -PLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVK-YIE---EKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGD 155 (177)
Q Consensus 81 -~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~ 155 (177)
+++|.++.+++.+++|..++.+.+.+........ ... ......+..+....++.+.++.+|++|++ ++|++|+
T Consensus 83 ~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~Gd 160 (214)
T PLN02473 83 TDLLGKTLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLAT--NRYLGGD 160 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhcc--CCcccCC
Confidence 6899999999999999999887765543222211 111 11112345566778899999999999987 7899999
Q ss_pred CchHHHHHHHHHHHHhh
Q 030456 156 EVFLICIWHRSFMQRST 172 (177)
Q Consensus 156 ~~t~aDi~l~~~l~~~~ 172 (177)
++|+|||++++.+.++.
T Consensus 161 ~~t~ADi~~~~~~~~~~ 177 (214)
T PLN02473 161 EFTLADLTHMPGMRYIM 177 (214)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999887754
No 5
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=100.00 E-value=9.2e-34 Score=202.66 Aligned_cols=173 Identities=47% Similarity=0.776 Sum_probs=141.2
Q ss_pred eecccCCCchhHHHHHHHHHcCCcceEEEeecCC-CCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHHhhCCCCC
Q 030456 3 KLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVK-GEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQPP 81 (177)
Q Consensus 3 ~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~-~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~~~~~~~~ 81 (177)
+||++..||+++++|++|+++||+|+.+.++... +++..+++.+.||.|++|+|++||.+++||.+|++||++++++.+
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~~ 80 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLEETYPDPP 80 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHHHhCCCCC
Confidence 5899999999999999999999999999998632 345678899999999999999999999999999999999999878
Q ss_pred CCCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHhh--cCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchH
Q 030456 82 LLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEK--AGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFL 159 (177)
Q Consensus 82 l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ 159 (177)
+.|.++.+++.+++|..++...+.+............. .......+...+.+.+.|+.+|++|++++++|++|+++|+
T Consensus 81 l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~ 160 (210)
T TIGR01262 81 LLPADPIKRARVRALALLIACDIHPLNNLRVLQYLREKLGVEEEARNRWYQHWISKGFAALEALLQPHAGAFCVGDTPTL 160 (210)
T ss_pred CCCCCHHHHHHHHHHHHHHhcccChhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEeeCCCCCH
Confidence 99999999999999999987665543222222221111 1122334556677999999999999875567999999999
Q ss_pred HHHHHHHHHHHhhcCC
Q 030456 160 ICIWHRSFMQRSTGST 175 (177)
Q Consensus 160 aDi~l~~~l~~~~~~~ 175 (177)
|||++++.+.++...+
T Consensus 161 ADi~~~~~l~~~~~~~ 176 (210)
T TIGR01262 161 ADLCLVPQVYNAERFG 176 (210)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999998876554
No 6
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=100.00 E-value=3e-34 Score=205.86 Aligned_cols=167 Identities=24% Similarity=0.313 Sum_probs=135.2
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEe-----CC--eeeeeHHHHHHHH
Q 030456 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVD-----GD--FVVSDSFAILMYL 73 (177)
Q Consensus 1 m~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~-----~~--~~l~es~~I~~~l 73 (177)
|||||+.+ +++|++|+++|+++|+||+.+.+++..+++..++|+++||.|+||+|++ || .+++||.||++||
T Consensus 1 m~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 1 MIDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred CeEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 89999665 8999999999999999999999998877777899999999999999996 45 4799999999999
Q ss_pred HhhCCCCCCCCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHhccCCCccc
Q 030456 74 EEKYPQPPLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYAT 153 (177)
Q Consensus 74 ~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~ 153 (177)
++++| .+.|.++.+++.++.|+.|....+.+.+..............+...+.....+.+.++.+|++|.+ ++|++
T Consensus 80 ~~~~~--~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~ 155 (215)
T PRK13972 80 AEKTG--LFLSHETRERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLEN--SPWLG 155 (215)
T ss_pred HHhcC--CCCCCCHHHHHHHHHHHHHHhhccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHHHHHhcc--Ccccc
Confidence 99986 477888999999999999988777654421100000011112344566677789999999999987 79999
Q ss_pred cCCchHHHHHHHHHHHHhh
Q 030456 154 GDEVFLICIWHRSFMQRST 172 (177)
Q Consensus 154 G~~~t~aDi~l~~~l~~~~ 172 (177)
|+++|+|||++++.+..+.
T Consensus 156 Gd~~t~ADi~l~~~~~~~~ 174 (215)
T PRK13972 156 GENYSIADIACWPWVNAWT 174 (215)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999988775443
No 7
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-33 Score=200.18 Aligned_cols=171 Identities=37% Similarity=0.491 Sum_probs=147.5
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCe-eeeeHHHHHHHHHhhCCCC
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDF-VVSDSFAILMYLEEKYPQP 80 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~-~l~es~~I~~~l~~~~~~~ 80 (177)
|+||++..||+|+|++++|.++|++|+.+.|+... +.+.++|..+||.|+||+|++++. +++||.+|++||+++||++
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~-~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~ 79 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDA-EQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERYPGP 79 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCccc-ccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhhCCCC
Confidence 68999999999999999999999999999999987 778999999999999999998765 8999999999999999976
Q ss_pred CCCCCCHH---HHHHHHHHHHHHhccccchhHHHHHHHHHhhcC-ccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCC
Q 030456 81 PLLPSDLK---RKAINYQAANIVSSSIQPLQNLAVVKYIEEKAG-ADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDE 156 (177)
Q Consensus 81 ~l~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~ 156 (177)
+++|.++. +++.+..|+.++...+.+.+............. .....+...+.+...++.+|+.|++ ++|++|++
T Consensus 80 ~l~p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~ 157 (211)
T COG0625 80 PLLPADPLARRARALLLWWLFFAASDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALLEALLAD--GPYLAGDR 157 (211)
T ss_pred CcCCCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHhcc--CCcccCCC
Confidence 69998874 888888999999888877765554443111222 3466788889999999999999998 99999999
Q ss_pred chHHHHHHHHHHHHhhcCC
Q 030456 157 VFLICIWHRSFMQRSTGST 175 (177)
Q Consensus 157 ~t~aDi~l~~~l~~~~~~~ 175 (177)
+|+||+++++.+.++...+
T Consensus 158 ~tiAD~~~~~~~~~~~~~~ 176 (211)
T COG0625 158 FTIADIALAPLLWRLALLG 176 (211)
T ss_pred CCHHHHHHHHHHHHhhhcC
Confidence 9999999999999876554
No 8
>PLN02395 glutathione S-transferase
Probab=100.00 E-value=4.9e-32 Score=194.42 Aligned_cols=168 Identities=28% Similarity=0.416 Sum_probs=138.5
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHHhhCCC--
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQ-- 79 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~~~~~~-- 79 (177)
+|||+. .+++++|++++|+++|++|+.+.++...+++++++|.+.||.|+||+|+++|.+++||.+|++||++++++
T Consensus 3 ~~ly~~-~~~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~~~~~~~~ 81 (215)
T PLN02395 3 LKVYGP-AFASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYAEKYRSQG 81 (215)
T ss_pred EEEEcC-CcCcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHHHcCCCC
Confidence 589974 55679999999999999999999998777778899999999999999999999999999999999999974
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhccccchhHHHHHHH-HH---hhcCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccC
Q 030456 80 PPLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKY-IE---EKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGD 155 (177)
Q Consensus 80 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~ 155 (177)
++++|.++.+++.+++|+.+....+.+.+....... .. .....++..+...+.+.+.++.+|++|++ ++|++|+
T Consensus 82 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~ 159 (215)
T PLN02395 82 PDLLGKTIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARLSK--SKYLAGD 159 (215)
T ss_pred cCcCCCChhHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcC--CccccCC
Confidence 369999999999999999998877665432222111 11 11122344566778899999999999987 7999999
Q ss_pred CchHHHHHHHHHHHHhh
Q 030456 156 EVFLICIWHRSFMQRST 172 (177)
Q Consensus 156 ~~t~aDi~l~~~l~~~~ 172 (177)
++|+||+++++++.++.
T Consensus 160 ~~s~ADi~l~~~~~~~~ 176 (215)
T PLN02395 160 FVSLADLAHLPFTEYLV 176 (215)
T ss_pred CcCHHHHHHHHHHHHHh
Confidence 99999999999887763
No 9
>PRK11752 putative S-transferase; Provisional
Probab=100.00 E-value=3.5e-32 Score=200.29 Aligned_cols=166 Identities=26% Similarity=0.339 Sum_probs=133.7
Q ss_pred CeeecccCCCchhHHHHHHHHHc------CCcceEEEeecCCCCCCChhhhhcCCCCccceEEeC----CeeeeeHHHHH
Q 030456 1 MLKLFSYWRSSCSHRVRIGLNLK------GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDG----DFVVSDSFAIL 70 (177)
Q Consensus 1 m~~Ly~~~~s~~~~~v~~~L~~~------gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~----~~~l~es~~I~ 70 (177)
||+||+. .||+|+||+++|+++ |++|+.+.|++..+++..++|.++||.|+||+|+++ +.+++||.+|+
T Consensus 44 ~~~Ly~~-~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~AIl 122 (264)
T PRK11752 44 PLQLYSL-GTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESGAIL 122 (264)
T ss_pred CeEEecC-CCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHHHHH
Confidence 7899975 599999999999997 999999999988777788999999999999999974 36899999999
Q ss_pred HHHHhhCCCCCCCCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHH-hhcCccHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030456 71 MYLEEKYPQPPLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIE-EKAGADERDIWAKTHIGKGFAALEKLLKDYAG 149 (177)
Q Consensus 71 ~~l~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~ 149 (177)
+||+++|+ +++|.++.+++++++|+.+....+. ........... .....+...+...+++.+.|+.+|++|++ +
T Consensus 123 ~YL~~~~~--~L~P~~~~era~v~~wl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~le~~L~~--~ 197 (264)
T PRK11752 123 LYLAEKFG--AFLPKDLAARTETLNWLFWQQGSAP-FLGGGFGHFYAYAPEKIEYAINRFTMEAKRQLDVLDKQLAE--H 197 (264)
T ss_pred HHHHHhcC--CcCCCCHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHhcc--C
Confidence 99999997 4999999999999999998765432 11111111111 11112234566677889999999999987 7
Q ss_pred CccccCCchHHHHHHHHHHHHhh
Q 030456 150 KYATGDEVFLICIWHRSFMQRST 172 (177)
Q Consensus 150 ~~l~G~~~t~aDi~l~~~l~~~~ 172 (177)
+|++|+++|+|||++++.+.++.
T Consensus 198 ~fl~Gd~~TlADi~l~~~l~~l~ 220 (264)
T PRK11752 198 EYIAGDEYTIADIAIWPWYGNLV 220 (264)
T ss_pred CCCCCCccCHHHHHHHHHHHHHh
Confidence 89999999999999999887653
No 10
>PRK10542 glutathionine S-transferase; Provisional
Probab=100.00 E-value=3.4e-32 Score=193.30 Aligned_cols=167 Identities=23% Similarity=0.375 Sum_probs=135.8
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCC-CCChhhhhcCCCCccceEE-eCCeeeeeHHHHHHHHHhhCCC
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGE-QFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLEEKYPQ 79 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~-~~~~~~~~~~p~~~~P~L~-~~~~~l~es~~I~~~l~~~~~~ 79 (177)
|+||+...| ++++++++|+++||+|+.+.+++.+++ ...++|.++||.|+||+|+ +||.+++||.+|++||++++|+
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~~~~~ 79 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLADSVPD 79 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHHHhCcc
Confidence 589987755 799999999999999999999987653 4568999999999999998 5889999999999999999997
Q ss_pred CCCC-CCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCch
Q 030456 80 PPLL-PSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVF 158 (177)
Q Consensus 80 ~~l~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t 158 (177)
++++ |.++.+++.++.|+.++...+.+.+.... . ....+...+...+.+.+.++.+|++|++ ++|++|+++|
T Consensus 80 ~~l~~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~s 152 (201)
T PRK10542 80 RQLLAPVGSLSRYHTIEWLNYIATELHKGFTPLF----R-PDTPEEYKPTVRAQLEKKFQYVDEALAD--EQWICGQRFT 152 (201)
T ss_pred cccCCCCCcHHHHHHHHHHHHHHhhhhhhhhhcc----C-CCChHHHHHHHHHHHHHHHHHHHHHhcC--CCeeeCCCCc
Confidence 7766 56788999999999988766554332111 1 1112233456677899999999999987 7899999999
Q ss_pred HHHHHHHHHHHHhhcCCC
Q 030456 159 LICIWHRSFMQRSTGSTL 176 (177)
Q Consensus 159 ~aDi~l~~~l~~~~~~~~ 176 (177)
+|||++++.+.++...++
T Consensus 153 ~ADi~l~~~~~~~~~~~~ 170 (201)
T PRK10542 153 IADAYLFTVLRWAYAVKL 170 (201)
T ss_pred HHhHHHHHHHHHhhccCC
Confidence 999999999998866553
No 11
>PRK10357 putative glutathione S-transferase; Provisional
Probab=100.00 E-value=1.4e-31 Score=190.29 Aligned_cols=166 Identities=22% Similarity=0.222 Sum_probs=132.8
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEE-eCCeeeeeHHHHHHHHHhhCCCC
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLEEKYPQP 80 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~-~~~~~l~es~~I~~~l~~~~~~~ 80 (177)
|+||++..||++++|+++|+++|++|+.+.++... ...++.+.||.|++|+|+ ++|.+++||.+|++||++++++.
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~---~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~ 77 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYN---ADNGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIELLNVAP 77 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCC---CchhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHHHhCCCC
Confidence 58999999999999999999999999999888653 345677789999999998 67899999999999999999877
Q ss_pred CCCCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHH
Q 030456 81 PLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLI 160 (177)
Q Consensus 81 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~a 160 (177)
+++|.++.+++.+++|..+..+.+..................++..+...+.+.+.|+.+|++|++ ++ ++|+++|+|
T Consensus 78 ~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~--~~-l~Gd~~t~A 154 (202)
T PRK10357 78 AMLPRDPLAALRVRQLEALADGIMDAALVSVREQARPAAQQSEDELLRQREKINRSLDALEGYLVD--GT-LKTDTVNLA 154 (202)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHhhcc--Cc-ccCCCcCHH
Confidence 799999999999999988876554433222111111111112334456777899999999999987 66 999999999
Q ss_pred HHHHHHHHHHhhc
Q 030456 161 CIWHRSFMQRSTG 173 (177)
Q Consensus 161 Di~l~~~l~~~~~ 173 (177)
||++++.+.++..
T Consensus 155 Di~l~~~l~~~~~ 167 (202)
T PRK10357 155 TIAIACAVGYLNF 167 (202)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887643
No 12
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=6.8e-31 Score=185.01 Aligned_cols=161 Identities=29% Similarity=0.413 Sum_probs=140.1
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcC-CCCccceEEeCCeeeeeHHHHHHHHHhhCC-C
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKIN-PIGYVPALVDGDFVVSDSFAILMYLEEKYP-Q 79 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~-p~~~~P~L~~~~~~l~es~~I~~~l~~~~~-~ 79 (177)
++||++..|||++|++++|++|||||+.+..++.+ +++++++.| +.++||||+++|..++||..|++|||+.+| +
T Consensus 10 vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~---Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~~ 86 (231)
T KOG0406|consen 10 VKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTN---KSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPSG 86 (231)
T ss_pred EEEEEeecChHHHHHHHHHHhcCCceEEEecCCCC---CCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccCC
Confidence 58999999999999999999999999999999875 899999999 679999999999999999999999999999 6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchH
Q 030456 80 PPLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFL 159 (177)
Q Consensus 80 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ 159 (177)
.+++|.|+-+|+..+.|.++++..+......... ....+..+...+.+.+.|..+|+.|.. +++|+.|+++++
T Consensus 87 ~~iLP~DPy~Ra~arfwa~~id~~~~~~~~~~~~------~~~~e~~~~~~~e~~e~l~~lE~el~k-~k~~fgG~~~G~ 159 (231)
T KOG0406|consen 87 PPILPSDPYERAQARFWAEYIDKKVFFVGRFVVA------AKGGEEQEAAKEELREALKVLEEELGK-GKDFFGGETIGF 159 (231)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHh------hcCchHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCcCH
Confidence 8999999999999999999999755433322221 113356778888899999999999993 489999999999
Q ss_pred HHHHHHHHHHHhh
Q 030456 160 ICIWHRSFMQRST 172 (177)
Q Consensus 160 aDi~l~~~l~~~~ 172 (177)
.|+++++.+.++.
T Consensus 160 vDi~~~p~~~~~~ 172 (231)
T KOG0406|consen 160 VDIAIGPSFERWL 172 (231)
T ss_pred hhhhHHhhHHHHH
Confidence 9999997776654
No 13
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.7e-29 Score=181.90 Aligned_cols=169 Identities=36% Similarity=0.466 Sum_probs=149.9
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHHhhCC-C
Q 030456 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYP-Q 79 (177)
Q Consensus 1 m~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~~~~~-~ 79 (177)
.++||++..|+.|+++.+++.++|++|+.+.++...+++++++|+++||.++||+|+++|..++||.||+.||.++|. .
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl~~ky~~~ 81 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYLAEKYGPL 81 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHHHHHcCCC
Confidence 378999999999999999999999999999999999999999999999999999999999999999999999999996 4
Q ss_pred CC-CCCCCHHHHHHHHHHHHHHhccccchh--HHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCC
Q 030456 80 PP-LLPSDLKRKAINYQAANIVSSSIQPLQ--NLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDE 156 (177)
Q Consensus 80 ~~-l~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~ 156 (177)
.+ ++|.+..+++.+++|+.+..+.+.+.. .....+..-...-.....+.....+...++.+|+.|.+ +.|+.|++
T Consensus 82 ~~~l~p~~~~~ra~v~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~--~~yl~g~~ 159 (226)
T KOG0867|consen 82 GGILLPKDLKERAIVDQWLEFENGVLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLKT--QVYLAGDQ 159 (226)
T ss_pred CcccCCcCHHHHHHHHHHHHhhhcccccccccceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHcc--CCcccCCc
Confidence 44 999999999999999999999888763 33333322222224567788889999999999999998 99999999
Q ss_pred chHHHHHHHHHHHHh
Q 030456 157 VFLICIWHRSFMQRS 171 (177)
Q Consensus 157 ~t~aDi~l~~~l~~~ 171 (177)
+|+||+.+.+.+..+
T Consensus 160 ~tlADl~~~~~~~~~ 174 (226)
T KOG0867|consen 160 LTLADLSLASTLSQF 174 (226)
T ss_pred ccHHHHHHhhHHHHH
Confidence 999999999998876
No 14
>PRK10387 glutaredoxin 2; Provisional
Probab=99.96 E-value=1.3e-28 Score=176.00 Aligned_cols=163 Identities=20% Similarity=0.174 Sum_probs=119.8
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEE-eCCeeeeeHHHHHHHHHhhCCCC
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLEEKYPQP 80 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~-~~~~~l~es~~I~~~l~~~~~~~ 80 (177)
||||++..||+|+|++++|+++|++|+.+.++... ... -.+.||.++||+|+ +||.+++||.+|++||+++||++
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~--~~~--~~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~ 76 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDD--EAT--PIRMIGQKQVPILQKDDGSYMPESLDIVHYIDELDGKP 76 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCc--hhh--HHHhcCCcccceEEecCCeEecCHHHHHHHHHHhCCCc
Confidence 68999999999999999999999999998876432 222 25789999999995 78999999999999999999965
Q ss_pred CCCCCCHHHHHHHHHHHHHHhccccchhHHHHHH-------------H----HHhhcCcc----HHHHHHHHHHHHHHHH
Q 030456 81 PLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVK-------------Y----IEEKAGAD----ERDIWAKTHIGKGFAA 139 (177)
Q Consensus 81 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~----~~~~~~~~----~~~~~~~~~~~~~l~~ 139 (177)
.+.+ .+++.++.|+.++...+...+...... . .....+.. ...+...+++.+.|+.
T Consensus 77 ~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 153 (210)
T PRK10387 77 LLTG---KRSPAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADLRA 153 (210)
T ss_pred cCCC---cccHHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHHHH
Confidence 4432 246678888877755443222110000 0 00000000 0113556789999999
Q ss_pred HHHHHhccCCCccccCCchHHHHHHHHHHHHhhcC
Q 030456 140 LEKLLKDYAGKYATGDEVFLICIWHRSFMQRSTGS 174 (177)
Q Consensus 140 le~~L~~~~~~~l~G~~~t~aDi~l~~~l~~~~~~ 174 (177)
+|++|+ ++|++|+++|+||+++++.+.++...
T Consensus 154 le~~L~---~~~l~G~~~s~ADi~l~~~l~~~~~~ 185 (210)
T PRK10387 154 LDPLIV---KPNAVNGELSTDDIHLFPILRNLTLV 185 (210)
T ss_pred HHHHhc---CccccCCCCCHHHHHHHHHHhcceee
Confidence 999985 38999999999999999999998753
No 15
>PLN02378 glutathione S-transferase DHAR1
Probab=99.96 E-value=1.8e-27 Score=170.49 Aligned_cols=146 Identities=27% Similarity=0.282 Sum_probs=112.6
Q ss_pred ccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHHhhCCCCCCCCC
Q 030456 6 SYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQPPLLPS 85 (177)
Q Consensus 6 ~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~~~~~~~~l~p~ 85 (177)
.+..||+|+|++++|+++|++|+.+.+++.. ++++|++.||.|+||+|++||.+++||.+|++||+++||+..+.
T Consensus 16 ~~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~---~~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~~l~-- 90 (213)
T PLN02378 16 HLGDCPFSQRALLTLEEKSLTYKIHLINLSD---KPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDPPLK-- 90 (213)
T ss_pred CCCCCcchHHHHHHHHHcCCCCeEEEeCccc---CCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHhCCCCCCC--
Confidence 3566999999999999999999999999864 56799999999999999999999999999999999999875553
Q ss_pred CHHHHHHHHHHHHHHhccccchhHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHHHH
Q 030456 86 DLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLICIWHR 165 (177)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~ 165 (177)
++.+++.+...+.. .+.. ...... ..+.....+.+.|..+|++|++++++|++|+++|+||++++
T Consensus 91 ~~~~~a~i~~~~~~-------~~~~----~~~~~~----~~~~~~~~~~~~l~~le~~L~~~~~~fl~Gd~~T~ADi~l~ 155 (213)
T PLN02378 91 TPAEFASVGSNIFG-------TFGT----FLKSKD----SNDGSEHALLVELEALENHLKSHDGPFIAGERVSAVDLSLA 155 (213)
T ss_pred CHHHHHHHHHHHHH-------HHHH----HHhcCC----hhhHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCchhhHHHH
Confidence 45566655442211 1111 111111 11233456778899999999854479999999999999999
Q ss_pred HHHHHh
Q 030456 166 SFMQRS 171 (177)
Q Consensus 166 ~~l~~~ 171 (177)
+.+.++
T Consensus 156 ~~~~~l 161 (213)
T PLN02378 156 PKLYHL 161 (213)
T ss_pred HHHHHH
Confidence 998765
No 16
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.96 E-value=3.5e-27 Score=169.82 Aligned_cols=149 Identities=21% Similarity=0.207 Sum_probs=115.5
Q ss_pred CCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHHhhCCC---CCCCC
Q 030456 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQ---PPLLP 84 (177)
Q Consensus 8 ~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~~~~~~---~~l~p 84 (177)
..||+|++++++|+++|++|+.+.+++.. ++++|+++||.|++|+|+++|.+++||.+|++||+++|+. +++.|
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~---~~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p~l~p 93 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLKR---KPEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPKLSP 93 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCCC---CCHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHHHHcCCCCCCCCCC
Confidence 56899999999999999999999999874 5799999999999999999999999999999999999974 44666
Q ss_pred CCHHHHHHHHHHHHHHhccccchhHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHhc----------------cC
Q 030456 85 SDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKD----------------YA 148 (177)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~----------------~~ 148 (177)
.++..++....+. ..+.. +... ..+...+...+.+.+.+..||++|.+ ++
T Consensus 94 ~~~~~~~~~~~l~--------~~~~~----~~~~--~~~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~~~~~~ 159 (236)
T TIGR00862 94 KHPESNTAGLDIF--------AKFSA----YIKN--SNPEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAEDEKVSR 159 (236)
T ss_pred CCHHHHHHHHHHH--------HHHHH----HHHc--CCHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccC
Confidence 6655444321111 11111 1111 12233455666789999999999973 14
Q ss_pred CCccccCCchHHHHHHHHHHHHhhc
Q 030456 149 GKYATGDEVFLICIWHRSFMQRSTG 173 (177)
Q Consensus 149 ~~~l~G~~~t~aDi~l~~~l~~~~~ 173 (177)
++|+.|+++|+|||++++.+.++..
T Consensus 160 ~~f~~Gd~~tlaD~~l~p~l~~l~~ 184 (236)
T TIGR00862 160 RKFLDGDELTLADCNLLPKLHIVKV 184 (236)
T ss_pred CCcccCCccchhhHHHHHHHHHHHH
Confidence 7999999999999999999998874
No 17
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.95 E-value=6.4e-27 Score=166.70 Aligned_cols=161 Identities=17% Similarity=0.171 Sum_probs=114.1
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCC-CChhhh--hcCCCCccceEEeCCeeeeeHHHHHHHHHhhC
Q 030456 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQ-FSPDFL--KINPIGYVPALVDGDFVVSDSFAILMYLEEKY 77 (177)
Q Consensus 1 m~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~-~~~~~~--~~~p~~~~P~L~~~~~~l~es~~I~~~l~~~~ 77 (177)
+++||++..+++++++|++|+++|++|+.+.++....+. ..+++. +.||.|++|+|++||.+++||.||++||++++
T Consensus 4 ~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~YLa~~~ 83 (205)
T PTZ00057 4 EIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRYLSKKY 83 (205)
T ss_pred ceEEEecCCCcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHHHHHHc
Confidence 378999999999999999999999999998764211000 011122 47999999999999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCc
Q 030456 78 PQPPLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEV 157 (177)
Q Consensus 78 ~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~ 157 (177)
| +.+.+..++..+..+...+.+........ ... .+...+...+.+.+.+..+|++|++++++|++|+++
T Consensus 84 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~Gd~~ 152 (205)
T PTZ00057 84 K---ICGESELNEFYADMIFCGVQDIHYKFNNT---NLF-----KQNETTFLNEELPKWSGYFENILKKNHCNYFVGDNL 152 (205)
T ss_pred C---CCCCCHHHHHHHHHHHHHHHHHHHHHhhh---HHH-----HHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCcc
Confidence 7 44555544444443332221111111000 000 012234566788999999999998744589999999
Q ss_pred hHHHHHHHHHHHHhh
Q 030456 158 FLICIWHRSFMQRST 172 (177)
Q Consensus 158 t~aDi~l~~~l~~~~ 172 (177)
|+||+++++.+.++.
T Consensus 153 T~AD~~l~~~~~~~~ 167 (205)
T PTZ00057 153 TYADLAVFNLYDDIE 167 (205)
T ss_pred cHHHHHHHHHHHHHH
Confidence 999999999988764
No 18
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.95 E-value=8.1e-27 Score=171.22 Aligned_cols=145 Identities=25% Similarity=0.305 Sum_probs=113.5
Q ss_pred cCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHHhhCCCCCCCCCC
Q 030456 7 YWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQPPLLPSD 86 (177)
Q Consensus 7 ~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~~~~~~~~l~p~~ 86 (177)
...||+|+|++++|+++|++|+.+.+++.+ ++++|.++||.|++|+|+++|.+++||.+|++||+++||+..+. +
T Consensus 70 ~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~---~~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~~L~--~ 144 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEKHLPYDMKLVDLTN---KPEWFLKISPEGKVPVVKLDEKWVADSDVITQALEEKYPDPPLA--T 144 (265)
T ss_pred CCCCcHHHHHHHHHHHcCCCCEEEEeCcCc---CCHHHHhhCCCCCCCEEEECCEEEecHHHHHHHHHHHCCCCCCC--C
Confidence 445999999999999999999999998753 67899999999999999999999999999999999999976664 5
Q ss_pred HHHHHHHHHHHHHHhccccchhHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHHHHH
Q 030456 87 LKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLICIWHRS 166 (177)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~~ 166 (177)
+.+++.+..++... + ....... .+ .+...+.+.+.++.+|++|++ +++|++|+++|+|||++++
T Consensus 145 ~~era~i~~~l~~~-------~----~~~~~~~--~~--~~~~~~~l~~~l~~LE~~L~~-~g~yl~Gd~~SlADi~l~p 208 (265)
T PLN02817 145 PPEKASVGSKIFST-------F----IGFLKSK--DP--GDGTEQALLDELTSFDDYIKE-NGPFINGEKISAADLSLGP 208 (265)
T ss_pred HHHHHHHHHHHHHH-------H----HHHhccC--Cc--chHHHHHHHHHHHHHHHHHhc-CCCeeCCCCCCHHHHHHHH
Confidence 66777776643211 1 0111111 11 112235677889999999985 3699999999999999999
Q ss_pred HHHHhh
Q 030456 167 FMQRST 172 (177)
Q Consensus 167 ~l~~~~ 172 (177)
.+.++.
T Consensus 209 ~L~~l~ 214 (265)
T PLN02817 209 KLYHLE 214 (265)
T ss_pred HHHHHH
Confidence 987664
No 19
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.95 E-value=5.7e-27 Score=167.34 Aligned_cols=162 Identities=19% Similarity=0.173 Sum_probs=115.6
Q ss_pred eecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEE-eCCeeeeeHHHHHHHHHhhCCCCC
Q 030456 3 KLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLEEKYPQPP 81 (177)
Q Consensus 3 ~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~-~~~~~l~es~~I~~~l~~~~~~~~ 81 (177)
|||++..||+|+|+|++|+++|++|+.+.+... +. ....+.||.|++|+|+ +||.+++||.+|++||+++||.+.
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~--~~--~~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~ 76 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLND--DE--ETPIRMIGAKQVPILQKDDGRAMPESLDIVAYFDKLDGEPL 76 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCC--cc--hhHHHhcCCCCcceEEeeCCeEeccHHHHHHHHHHhCCCcc
Confidence 689999999999999999999999998766432 22 2337899999999998 889999999999999999998643
Q ss_pred CCCCCHHHHHHHHHHHHHHhccccchhHHHHH-------------H-HHHhh---cCcc----HHHHHHHHHHHHHHHHH
Q 030456 82 LLPSDLKRKAINYQAANIVSSSIQPLQNLAVV-------------K-YIEEK---AGAD----ERDIWAKTHIGKGFAAL 140 (177)
Q Consensus 82 l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~-~~~~~---~~~~----~~~~~~~~~~~~~l~~l 140 (177)
+.|. .++.+++|+.++...+...+..... . +.... .+.. ...+...+.+.+.|+.+
T Consensus 77 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~l 153 (209)
T TIGR02182 77 LTGK---VSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEEL 153 (209)
T ss_pred CCCC---ChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHHH
Confidence 4332 3456667766544433222110000 0 00000 0000 00134567789999999
Q ss_pred HHHHhccCCCccccCCchHHHHHHHHHHHHhhcC
Q 030456 141 EKLLKDYAGKYATGDEVFLICIWHRSFMQRSTGS 174 (177)
Q Consensus 141 e~~L~~~~~~~l~G~~~t~aDi~l~~~l~~~~~~ 174 (177)
|++|++ ++|+.| ++|+||+++++.+.++...
T Consensus 154 e~~L~~--~~~l~g-~~TiADi~l~~~l~~~~~~ 184 (209)
T TIGR02182 154 DKLIDG--PNAVNG-ELSEDDILVFPLLRNLTLV 184 (209)
T ss_pred HHHHhC--ccccCC-CCCHHHHHHHHHhcCeeee
Confidence 999998 899965 6999999999999988764
No 20
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1e-25 Score=157.80 Aligned_cols=164 Identities=18% Similarity=0.161 Sum_probs=135.7
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHHhhCCCCC
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQPP 81 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~~~~~~~~ 81 (177)
+||+++...+.+..+|++++..|++|+.+.+...+. +.......|.|++|+|..||..+.+|.||++||+++++
T Consensus 4 ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~---w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyLArk~g--- 77 (206)
T KOG1695|consen 4 YKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDA---WEELKDKMPFGQLPVLEVDGKKLVQSRAILRYLARKFG--- 77 (206)
T ss_pred eEEEecCcchhHHHHHHHHHhcCCCcceeeeccccc---hhhhcccCCCCCCCEEeECCEeeccHHHHHHHHHHHhC---
Confidence 589999999999999999999999999999997642 45555668999999999999999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHhhcCccHHHH-HHHHHHHHHHHHHHHHHhccCCCccccCCchHH
Q 030456 82 LLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDI-WAKTHIGKGFAALEKLLKDYAGKYATGDEVFLI 160 (177)
Q Consensus 82 l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~a 160 (177)
+.++++.+++.++.+.+.+.+....++...+.....+.. +...+ .......+.+..+++.|..+++.||+||++|+|
T Consensus 78 l~Gkt~~E~a~vD~i~d~~~D~~~~~~~~~~~~~~~g~~--~~~~~~~~~Pa~~~~~~~~~~~L~~~~sgflvGd~lT~a 155 (206)
T KOG1695|consen 78 LAGKTEEEEAWVDMIVDQFKDFRWEIFRQPYTAPEAGKS--EEELDKLYLPAKPKYFKILEKILKKNKSGFLVGDKLTWA 155 (206)
T ss_pred cCCCCHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhccc--hhhhhhhhccchHHHHHHHHHHHHhCCCCeeecCcccHH
Confidence 999999999999999988887666544443332222221 12122 666778889999999999777899999999999
Q ss_pred HHHHHHHHHHhhc
Q 030456 161 CIWHRSFMQRSTG 173 (177)
Q Consensus 161 Di~l~~~l~~~~~ 173 (177)
|+.++..+..+..
T Consensus 156 Dl~i~e~l~~l~~ 168 (206)
T KOG1695|consen 156 DLVIAEHLDTLEE 168 (206)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887765
No 21
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.93 E-value=8.2e-25 Score=154.12 Aligned_cols=175 Identities=23% Similarity=0.268 Sum_probs=129.2
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHHhhCC-CC
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYP-QP 80 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~~~~~-~~ 80 (177)
+.||.++.|-.++|||+++++|||.|+...|++..++++.+||.++||.|.||||++++.+|.|+..|++|+++++- +.
T Consensus 27 ~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvErtf~ger 106 (325)
T KOG4420|consen 27 LVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVERTFTGER 106 (325)
T ss_pred ceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEecCCeecccHHHHHHHHHHhhcccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999986 45
Q ss_pred CCCCC-CHHHHHHHHHHHH---------HHhcc----------ccchhH---HHH-------HHHHH-h-----------
Q 030456 81 PLLPS-DLKRKAINYQAAN---------IVSSS----------IQPLQN---LAV-------VKYIE-E----------- 118 (177)
Q Consensus 81 ~l~p~-~~~~~~~~~~~~~---------~~~~~----------~~~~~~---~~~-------~~~~~-~----------- 118 (177)
.|.|+ +.....++..... +..++ +-|... ... ..... .
T Consensus 107 ~l~pe~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~s~iP~~~~iR~~~~k~~~~v~~l~~~e~pdla~ay~ak 186 (325)
T KOG4420|consen 107 VLMPEVGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTTDSMIPKYAEIRRHLAKATTDVMKLDHEEEPDLAEAYLAK 186 (325)
T ss_pred cccccccccccHHHHHHHHHHHhcCcchhhccccccchhhccccCcccHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHH
Confidence 57776 2222222222211 11111 000000 000 00000 0
Q ss_pred ---------hcCccHHHHHHHHHHHHHHHHHHHHHhcc--CCCccccCCchHHHHHHHHHHHHhhcCCC
Q 030456 119 ---------KAGADERDIWAKTHIGKGFAALEKLLKDY--AGKYATGDEVFLICIWHRSFMQRSTGSTL 176 (177)
Q Consensus 119 ---------~~~~~~~~~~~~~~~~~~l~~le~~L~~~--~~~~l~G~~~t~aDi~l~~~l~~~~~~~~ 176 (177)
+-.+....+.+...+...|+.+|+.|.++ ...||||+.+|.||+++.+.|+++..+|+
T Consensus 187 qkkl~~kl~~hdd~s~lkkild~l~~~Ld~VEteLe~r~~~~~wL~G~efslADVsLg~~LhRL~~Lg~ 255 (325)
T KOG4420|consen 187 QKKLMAKLLEHDDVSYLKKILDELAMVLDQVETELEKRKLCELWLCGCEFSLADVSLGATLHRLKFLGL 255 (325)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhccccceeeccccchHHHHHHHHHHHHHHHccc
Confidence 00112334566667888888888888874 26899999999999999999999999886
No 22
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=99.87 E-value=2e-21 Score=133.25 Aligned_cols=148 Identities=24% Similarity=0.230 Sum_probs=114.4
Q ss_pred CCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHHhhCCCCCCCCCCHH
Q 030456 9 RSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQPPLLPSDLK 88 (177)
Q Consensus 9 ~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~~~~~~~~l~p~~~~ 88 (177)
.||+|+++.|.|+++|++|.++.|++.+ ++++|+++.|.+++|+|..|+..++||..|.++|++++|.+++---.+.
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~~---kp~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p~~~~~~~~ 96 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLSR---KPEWFLDISPGGKPPVLKFDEKWVTDSDKIEEFLEEKLPPPKLPTLAPP 96 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecCC---CcHHHHhhCCCCCCCeEEeCCceeccHHHHHHHHHHhcCCCCCcccCCH
Confidence 4899999999999999999999999885 7899999999999999999999999999999999999996553221122
Q ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHhc-cCCCccccCCchHHHHHHHHH
Q 030456 89 RKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKD-YAGKYATGDEVFLICIWHRSF 167 (177)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~~~l~G~~~t~aDi~l~~~ 167 (177)
+.+.+ ...++..+..... ...+++.+.....+-..|..|+++|.. +.++|+.||++|.|||.++|-
T Consensus 97 E~asa----------g~diF~kF~~fi~---ksk~~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~aDcsLlPK 163 (221)
T KOG1422|consen 97 ESASA----------GSDIFAKFSAFIK---KSKDAANDGLEKALLKELEKLDDYLKSPSRRKFLDGDKLTLADCSLLPK 163 (221)
T ss_pred HHHhh----------HHHHHHHHHHHHh---CchhhccchHHHHHHHHHHHHHHHhcCccCCccccCCeeeeehhhhchh
Confidence 22111 1112211111111 112345566667788888999999997 679999999999999999999
Q ss_pred HHHhh
Q 030456 168 MQRST 172 (177)
Q Consensus 168 l~~~~ 172 (177)
|+.++
T Consensus 164 L~~i~ 168 (221)
T KOG1422|consen 164 LHHIK 168 (221)
T ss_pred HHHHH
Confidence 98775
No 23
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.87 E-value=5.4e-22 Score=118.40 Aligned_cols=73 Identities=38% Similarity=0.606 Sum_probs=68.9
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHH
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~ 74 (177)
++||++..|++|+|++++|+++|++|+.+.++...++++.++|.++||.|++|+|++||.+++||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 4799999999999999999999999999999987777778899999999999999999999999999999985
No 24
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.87 E-value=8.8e-22 Score=120.12 Aligned_cols=77 Identities=47% Similarity=0.709 Sum_probs=71.5
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeC---CeeeeeHHHHHHHHHhhC
Q 030456 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDG---DFVVSDSFAILMYLEEKY 77 (177)
Q Consensus 1 m~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~---~~~l~es~~I~~~l~~~~ 77 (177)
|++||+++. |+|++++++|+++|++|+.+.++...++...++|.+.||.+++|+|+++ |..++||.+|++||++++
T Consensus 1 ~~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~ 79 (81)
T cd03048 1 MITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEKY 79 (81)
T ss_pred CeEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHHh
Confidence 899998875 9999999999999999999999987666778999999999999999987 899999999999999998
Q ss_pred C
Q 030456 78 P 78 (177)
Q Consensus 78 ~ 78 (177)
+
T Consensus 80 ~ 80 (81)
T cd03048 80 D 80 (81)
T ss_pred C
Confidence 6
No 25
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.87 E-value=6.8e-22 Score=119.38 Aligned_cols=75 Identities=28% Similarity=0.278 Sum_probs=67.1
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEe--CCeeeeeHHHHHHHHHhhC
Q 030456 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVD--GDFVVSDSFAILMYLEEKY 77 (177)
Q Consensus 1 m~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~--~~~~l~es~~I~~~l~~~~ 77 (177)
|++||+++.||+|+|++++|+++|+||+.+.++ .++...+++.+.||.+++|+|++ +|.+++||.+|++||+++|
T Consensus 1 ~~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~--~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 1 PLELYEFEGSPFCRLVREVLTELELDVILYPCP--KGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred CceEecCCCCchHHHHHHHHHHcCCcEEEEECC--CChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 899999999999999999999999999998775 33345678999999999999996 4689999999999999875
No 26
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.87 E-value=1e-21 Score=118.05 Aligned_cols=74 Identities=47% Similarity=0.785 Sum_probs=69.5
Q ss_pred ecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHHhhCCCC
Q 030456 4 LFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQP 80 (177)
Q Consensus 4 Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~~~~~~~ 80 (177)
||++..||+|+|+|++|+++||+|+.+.++... ..+++.+.||.+++|+|++||.+++||.+|++||+++|+++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~---~~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEE---KRPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTS---TSHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCccc---chhHHHhhcccccceEEEECCEEEeCHHHHHHHHHHHcCCC
Confidence 799999999999999999999999999998653 47999999999999999999999999999999999999864
No 27
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.85 E-value=3.5e-21 Score=115.47 Aligned_cols=74 Identities=45% Similarity=0.671 Sum_probs=69.8
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHHh
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEE 75 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~~ 75 (177)
|+||+++.||+|++++++|+++|++|+.+.+++..+++..+++.+.||.+++|+|+++|.+++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHHhC
Confidence 68999999999999999999999999999999877777789999999999999999999999999999999974
No 28
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.85 E-value=5.7e-21 Score=115.11 Aligned_cols=76 Identities=49% Similarity=0.751 Sum_probs=70.9
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHHhhC
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKY 77 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~~~~ 77 (177)
++||+++.|++|++++++|+++|++|+.+.++...++...+++.+.||.+++|+|+++|.+++||.+|++||+++|
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 5899999999999999999999999999999987766667899999999999999999999999999999999875
No 29
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.85 E-value=8.7e-21 Score=114.32 Aligned_cols=75 Identities=48% Similarity=0.725 Sum_probs=70.1
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHHhh
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEK 76 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~~~ 76 (177)
++||+++.||+|+++|++|+++|++|+.+.++...++.+.+++.+.||.+++|+|+++|..++||.+|++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 789999999999999999999999999999988766667889999999999999999999999999999999864
No 30
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.84 E-value=1.7e-20 Score=112.12 Aligned_cols=73 Identities=41% Similarity=0.666 Sum_probs=68.6
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHH
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~ 74 (177)
++||+++.||+|++++++|+++|++|+.+.++...++++.+++.+.||.+++|+|+++|.+++||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999887666788999999999999999999999999999999984
No 31
>PLN02907 glutamate-tRNA ligase
Probab=99.84 E-value=1.1e-19 Score=148.49 Aligned_cols=128 Identities=13% Similarity=0.074 Sum_probs=106.9
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEE-eCCeeeeeHHHHHHHHHhhCCCC
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLEEKYPQP 80 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~-~~~~~l~es~~I~~~l~~~~~~~ 80 (177)
++||+.+.| .+.++.++|++.|++|+.+. .+|.|++|+|+ +||..++||.||++||++.+++.
T Consensus 3 ~kLy~~~~S-~~~~v~~~L~~lgv~~e~~~---------------~~p~GkVPvLv~ddG~~L~ES~AIl~YLa~~~p~~ 66 (722)
T PLN02907 3 AKLSFPPDS-PPLAVIAAAKVAGVPLTIDP---------------SLKSGSAPTLLFSSGEKLTGTNVLLRYIARSASLP 66 (722)
T ss_pred EEEEECCCC-ChHHHHHHHHHcCCCcEEee---------------cCCCCCCcEEEECCCCEEECHHHHHHHHHHhCCCc
Confidence 489966655 46689999999999999863 25899999999 58899999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHH
Q 030456 81 PLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLI 160 (177)
Q Consensus 81 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~a 160 (177)
.|+|.++.+++.+++|+.+...... . ..+...++.+|++|+. ++||+|+++|+|
T Consensus 67 ~L~p~d~~erAqV~qWL~~~~~~~~------------------~------~~l~~~L~~LE~~L~~--rtYLvGd~lTLA 120 (722)
T PLN02907 67 GFYGQDAFESSQVDEWLDYAPTFSS------------------G------SEFENACEYVDGYLAS--RTFLVGYSLTIA 120 (722)
T ss_pred CCCCCCHHHHHHHHHHHHHHhhccc------------------H------HHHHHHHHHHHHHhcc--CCeecCCCCCHH
Confidence 8999999999999999998753110 0 1245678999999987 899999999999
Q ss_pred HHHHHHHHHHh
Q 030456 161 CIWHRSFMQRS 171 (177)
Q Consensus 161 Di~l~~~l~~~ 171 (177)
||++++.+..+
T Consensus 121 DIaL~~~L~~~ 131 (722)
T PLN02907 121 DIAIWSGLAGS 131 (722)
T ss_pred HHHHHHHHHhh
Confidence 99999887554
No 32
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.83 E-value=2.4e-20 Score=111.52 Aligned_cols=73 Identities=40% Similarity=0.567 Sum_probs=67.8
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHHhhC
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKY 77 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~~~~ 77 (177)
|+||+.+.||+|++++++|+++|++|+.+.++.. +..+++.+.||.+++|+|+++|..++||.+|++||+++|
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPD---NPPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCC---CCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 6899999999999999999999999999988865 356899999999999999999999999999999999875
No 33
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.83 E-value=2.9e-20 Score=114.21 Aligned_cols=70 Identities=24% Similarity=0.295 Sum_probs=65.0
Q ss_pred CCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHHhhCCCC
Q 030456 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQP 80 (177)
Q Consensus 8 ~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~~~~~~~ 80 (177)
..||||+|+|++|++||++|+.+.+++.+ ++++|.++||.|++|+|+++|.+++||.+|++||+++++.+
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~---~p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLde~~~~~ 89 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKR---KPEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLEETLCPP 89 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCC---CCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHHccCC
Confidence 45899999999999999999999999764 67999999999999999999999999999999999998754
No 34
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.83 E-value=2.4e-20 Score=111.74 Aligned_cols=73 Identities=44% Similarity=0.626 Sum_probs=67.4
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEE-eCCeeeeeHHHHHHHHH
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLE 74 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~-~~~~~l~es~~I~~~l~ 74 (177)
|+||+++.||+|+|++++|+++|++|+.+.++...++...+++.+.||.+++|+|+ ++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHHhC
Confidence 58999999999999999999999999999999876666778999999999999999 57889999999999985
No 35
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.83 E-value=3.6e-20 Score=110.73 Aligned_cols=73 Identities=58% Similarity=0.955 Sum_probs=68.8
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHH
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~ 74 (177)
|+||++..|++|+++|++|+++|++|+.+.+++..+++..+++.+.||.+++|+|+++|..++||.+|++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999987766778999999999999999999999999999999985
No 36
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.83 E-value=4.3e-20 Score=110.67 Aligned_cols=73 Identities=36% Similarity=0.606 Sum_probs=66.9
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCC-CccceEEeCCeeeeeHHHHHHHHHhhC
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPI-GYVPALVDGDFVVSDSFAILMYLEEKY 77 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~-~~~P~L~~~~~~l~es~~I~~~l~~~~ 77 (177)
|+||++..||+|+|++++|+++|++|+.+.++.. .+.+++.+.||. +++|+|+++|.+++||.+|++||++++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~---~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLG---NKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcc---cCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 6899999999999999999999999999988765 367889999996 999999999999999999999999864
No 37
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.83 E-value=3.9e-20 Score=110.57 Aligned_cols=73 Identities=40% Similarity=0.513 Sum_probs=67.4
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHH
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~ 74 (177)
|+||+++.|+++++++++|+++|++|+.+.++...++.+.+++.+.||.+++|+|+++|..++||.+|++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHHhC
Confidence 5899999999999999999999999999998865555677899999999999999999999999999999984
No 38
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.82 E-value=6.1e-20 Score=110.86 Aligned_cols=76 Identities=41% Similarity=0.550 Sum_probs=69.4
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeC-CeeeeeHHHHHHHHHhhCC
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDG-DFVVSDSFAILMYLEEKYP 78 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~-~~~l~es~~I~~~l~~~~~ 78 (177)
|+||+++.+ ++++++++|+++|++|+.+.++...++++.+++.+.||.+++|+|+++ |..++||.+|++||+++||
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 589988865 689999999999999999999987777788999999999999999976 8999999999999999885
No 39
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.82 E-value=9e-20 Score=109.83 Aligned_cols=76 Identities=46% Similarity=0.710 Sum_probs=69.3
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHHhhCC
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYP 78 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~~~~~ 78 (177)
|+||++.. +++++++++|+++|++|+.+.++...++.+.+++.+.||.+++|+|+++|..++||.+|++||+++||
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 58997765 78999999999999999999998765666789999999999999999999999999999999999875
No 40
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.81 E-value=2.6e-19 Score=107.69 Aligned_cols=74 Identities=50% Similarity=0.745 Sum_probs=66.4
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCC-CccceEEeC-CeeeeeHHHHHHHHHh
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPI-GYVPALVDG-DFVVSDSFAILMYLEE 75 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~-~~~P~L~~~-~~~l~es~~I~~~l~~ 75 (177)
|+|+++...++++++|++|+++|++|+.+.+++..++.+.++|.+.||. |++|+|+++ |..++||.||++||++
T Consensus 1 ~~l~l~~~~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 1 MTLTLYNGRGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEEESSSTTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred CEEEEECCCCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 5666677777999999999999999999999998888888999999999 999999999 9999999999999985
No 41
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.80 E-value=2e-19 Score=107.98 Aligned_cols=73 Identities=29% Similarity=0.422 Sum_probs=67.1
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEe-CCeeeeeHHHHHHHHHh
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVD-GDFVVSDSFAILMYLEE 75 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~-~~~~l~es~~I~~~l~~ 75 (177)
.+||++..|++|++++++|+++|++|+.+.++...+ ++.++|.++||.+++|+|++ +|.+++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~-~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 1 GTLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKE-NKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred CeEecCCCCccHHHHHHHHHHcCCceEEEecccccc-cCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 379999999999999999999999999999997644 67899999999999999996 58899999999999986
No 42
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.80 E-value=3.5e-19 Score=106.96 Aligned_cols=68 Identities=32% Similarity=0.395 Sum_probs=62.1
Q ss_pred CeeecccC-------CCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHH
Q 030456 1 MLKLFSYW-------RSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYL 73 (177)
Q Consensus 1 m~~Ly~~~-------~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l 73 (177)
|++||++. .||+|+|++++|+++|++|+.+.++. .+.||.+++|+|+++|.+++||.+|++||
T Consensus 1 m~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~----------~~~~p~g~vPvl~~~g~~l~eS~~I~~yL 70 (75)
T cd03080 1 MITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL----------AKRSPKGKLPFIELNGEKIADSELIIDHL 70 (75)
T ss_pred CEEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc----------ccCCCCCCCCEEEECCEEEcCHHHHHHHH
Confidence 89999888 68999999999999999999887763 15899999999999999999999999999
Q ss_pred HhhCC
Q 030456 74 EEKYP 78 (177)
Q Consensus 74 ~~~~~ 78 (177)
+++|+
T Consensus 71 ~~~~~ 75 (75)
T cd03080 71 EEKYG 75 (75)
T ss_pred HHHcC
Confidence 99874
No 43
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.80 E-value=2.1e-19 Score=107.35 Aligned_cols=72 Identities=24% Similarity=0.316 Sum_probs=65.4
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHHhh
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEK 76 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~~~ 76 (177)
++||++..|++|+++|++|+++|++|+.+.++.. ...+++.+.||.+++|+|++||.+++||.+|++||+++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~---~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGISWEEERVTYE---EWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLGRK 73 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHH---HhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHhcC
Confidence 6899999999999999999999999999999863 23457889999999999999999999999999999863
No 44
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.79 E-value=3.9e-19 Score=105.65 Aligned_cols=68 Identities=32% Similarity=0.550 Sum_probs=62.9
Q ss_pred eecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeC-CeeeeeHHHHHHHH
Q 030456 3 KLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDG-DFVVSDSFAILMYL 73 (177)
Q Consensus 3 ~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~-~~~l~es~~I~~~l 73 (177)
+||++..||+|+|++++|+++|++|+.+.++..+ ..+++.+.||.+++|+|+++ |..++||.+|++|+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~---~~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKN---KPAEMLAASPKGTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCC---CCHHHHHHCCCCCCCEEEECCCcEEecHHHHHHhh
Confidence 7999999999999999999999999999998763 46899999999999999974 99999999999996
No 45
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.79 E-value=5.8e-19 Score=109.41 Aligned_cols=71 Identities=34% Similarity=0.431 Sum_probs=65.0
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeC-CeeeeeHHHHHHHHH
Q 030456 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDG-DFVVSDSFAILMYLE 74 (177)
Q Consensus 1 m~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~-~~~l~es~~I~~~l~ 74 (177)
|++||+...||+|++++++|+++|++|+.+.++... ..+++.+.||.+++|+|+++ |..++||.+|++||+
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~---~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKD---KPDWFLEKNPQGKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCC---CcHHHHhhCCCCCcCEEEECCCCEEECHHHHHHhhC
Confidence 789999999999999999999999999999988653 45778999999999999976 899999999999985
No 46
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.78 E-value=3.7e-19 Score=106.05 Aligned_cols=72 Identities=26% Similarity=0.270 Sum_probs=64.5
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHHh
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEE 75 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~~ 75 (177)
++||++..|++|+++|++|+++|++|+.+.++...+ ...++.+.||.+++|+|+++|..++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~--~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEW--PELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHh--hhhhhccCCcCCCCCEEEECCEEEEecHHHHHHhhC
Confidence 689999999999999999999999999999886532 234588999999999999999999999999999974
No 47
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.78 E-value=4.9e-19 Score=105.24 Aligned_cols=70 Identities=19% Similarity=0.289 Sum_probs=60.8
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeC-CeeeeeHHHHHHHHHh
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDG-DFVVSDSFAILMYLEE 75 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~-~~~l~es~~I~~~l~~ 75 (177)
|+||++..||+|+|+|++|+++|++|+.+.++... .....+.+|.+++|+|+++ |..++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~----~~~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDD----EATPIRMIGAKQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCc----hHHHHHhcCCCccCEEEeCCCeEeehHHHHHHHHhC
Confidence 68999999999999999999999999998877431 2344578999999999975 8999999999999974
No 48
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.78 E-value=1.1e-18 Score=107.02 Aligned_cols=70 Identities=39% Similarity=0.518 Sum_probs=61.7
Q ss_pred CCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeC-CeeeeeHHHHHHHHHhhCC
Q 030456 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDG-DFVVSDSFAILMYLEEKYP 78 (177)
Q Consensus 8 ~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~-~~~l~es~~I~~~l~~~~~ 78 (177)
..||+|+|+|++|+++|++|+.+.++....+....++ +.||.+++|+|+++ |.+++||.+|++||+++||
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 6799999999999999999999999876544434455 78999999999998 8999999999999999875
No 49
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.77 E-value=1.5e-18 Score=102.69 Aligned_cols=68 Identities=57% Similarity=0.866 Sum_probs=58.4
Q ss_pred CCchhHHHHHHHHHcCCcceEEEeecC-CCCCCChhhhhcCCCCccceEEe-CCeeeeeHHHHHHHHHhh
Q 030456 9 RSSCSHRVRIGLNLKGLEYEYKAVNLV-KGEQFSPDFLKINPIGYVPALVD-GDFVVSDSFAILMYLEEK 76 (177)
Q Consensus 9 ~s~~~~~v~~~L~~~gi~~~~~~v~~~-~~~~~~~~~~~~~p~~~~P~L~~-~~~~l~es~~I~~~l~~~ 76 (177)
.||||+|++++|+++|++|+...+... .+..+.++|.+.||.++||+|++ +|.+++||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 499999999999999999999988543 34456689999999999999997 789999999999999974
No 50
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.77 E-value=2e-18 Score=105.26 Aligned_cols=75 Identities=25% Similarity=0.340 Sum_probs=64.0
Q ss_pred eecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCC-Chhhhh-----cCCCCccceEEeCCeeeeeHHHHHHHHHhh
Q 030456 3 KLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQF-SPDFLK-----INPIGYVPALVDGDFVVSDSFAILMYLEEK 76 (177)
Q Consensus 3 ~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~-~~~~~~-----~~p~~~~P~L~~~~~~l~es~~I~~~l~~~ 76 (177)
+||++..++.|++++++|+++|++|+.+.+++..++.. .+++.. .+|.++||+|++||.+++||.||++||+++
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YLa~~ 81 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYIARK 81 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHHhhc
Confidence 78999999999999999999999999999998764432 234432 239999999999999999999999999986
Q ss_pred C
Q 030456 77 Y 77 (177)
Q Consensus 77 ~ 77 (177)
+
T Consensus 82 ~ 82 (82)
T cd03075 82 H 82 (82)
T ss_pred C
Confidence 4
No 51
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.77 E-value=1.5e-18 Score=103.73 Aligned_cols=70 Identities=33% Similarity=0.403 Sum_probs=63.8
Q ss_pred eeecccCCCchhHHHHHHHHH--cCCcceEEEeecCCCCCCChhhhhcCCCCccceEE-eCCeeeeeHHHHHHHHH
Q 030456 2 LKLFSYWRSSCSHRVRIGLNL--KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLE 74 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~--~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~-~~~~~l~es~~I~~~l~ 74 (177)
|+||++..||+|+++|++|++ +|++|+.+.++.. .+.+++.+.||.+++|+|+ +||..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~---~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPW---SDDESLLAVNPLGKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcc---cCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhhC
Confidence 589999999999999999999 8999999988753 3578999999999999998 58899999999999985
No 52
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.74 E-value=1e-17 Score=101.49 Aligned_cols=71 Identities=24% Similarity=0.268 Sum_probs=61.4
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhc-----CCCCccceEEeCCeeeeeHHHHHHHHHhh
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKI-----NPIGYVPALVDGDFVVSDSFAILMYLEEK 76 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~-----~p~~~~P~L~~~~~~l~es~~I~~~l~~~ 76 (177)
++||+++.++.|++++++|+++|++|+.+.++.. +++.+. .|.+++|+|++||.+++||.||++||.++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~------~~~~~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL~~~ 75 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA------EDLEKLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYIAGK 75 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH------HHHHhhccccCCCCCCCCEEEECCEEEeeHHHHHHHHHHH
Confidence 5899999999999999999999999999988753 222222 36899999999999999999999999999
Q ss_pred CC
Q 030456 77 YP 78 (177)
Q Consensus 77 ~~ 78 (177)
++
T Consensus 76 ~~ 77 (79)
T cd03077 76 YN 77 (79)
T ss_pred cC
Confidence 86
No 53
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.74 E-value=1.2e-17 Score=100.77 Aligned_cols=71 Identities=27% Similarity=0.338 Sum_probs=61.6
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeC----CeeeeeHHHHHHHHHhhC
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDG----DFVVSDSFAILMYLEEKY 77 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~----~~~l~es~~I~~~l~~~~ 77 (177)
++||++..||+|++++++|.++|++|+.+.++... ..+ .+.||.+++|+|+++ |.+++||.+|++||++..
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~----~~~-~~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~ 76 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVS----RKE-IKWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYL 76 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchh----HHH-HHHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHHc
Confidence 68999999999999999999999999999876432 223 367999999999965 789999999999999874
No 54
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=6.3e-17 Score=108.41 Aligned_cols=161 Identities=19% Similarity=0.196 Sum_probs=111.4
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEE-eCCeeeeeHHHHHHHHHhhCCCC
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLEEKYPQP 80 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~-~~~~~l~es~~I~~~l~~~~~~~ 80 (177)
|+||-+..||||.|+||++-.+|||++......++.+.. .++-...+||+|+ +||+.+.||..|++|+++.++.+
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp----~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~ 76 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETP----IRMIGQKQVPILQKEDGRAMPESLDIVHYVDELDGKP 76 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccCh----hhhhcccccceEEccccccchhhhHHHHHHHHhcCch
Confidence 689999999999999999999999999998876653322 2344566899999 78999999999999999998754
Q ss_pred CCCCCCHHHHHHHHHHHHHHhccccchhHHHHHH-------------HHHhhcC-cc-------HHHHHHHHHHHHHHHH
Q 030456 81 PLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVK-------------YIEEKAG-AD-------ERDIWAKTHIGKGFAA 139 (177)
Q Consensus 81 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~-~~-------~~~~~~~~~~~~~l~~ 139 (177)
-+... .+..++.|+..+......+.-..+.+ ++..+.+ .. ..-.....++...|+.
T Consensus 77 ~lt~~---~~pai~~wlrkv~~y~nkll~PR~~k~~l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~i~~dl~~ 153 (215)
T COG2999 77 LLTGK---VRPAIEAWLRKVNGYLNKLLLPRFAKSALPEFATPSARKYFTDKKEASEGSFESLLNHTAQYLKRIQADLRA 153 (215)
T ss_pred hhccC---cCHHHHHHHHHhcchHhhhhhhhHhhcCCccccCHHHHHHHHhhhhhccccHHHHHhchHHHHHHHHHHHHH
Confidence 33332 23355566666555433322211111 1111111 11 1124566778889999
Q ss_pred HHHHHhccCCCccccCCchHHHHHHHHHHHHhh
Q 030456 140 LEKLLKDYAGKYATGDEVFLICIWHRSFMQRST 172 (177)
Q Consensus 140 le~~L~~~~~~~l~G~~~t~aDi~l~~~l~~~~ 172 (177)
++.++.+ .+=+- ...++-||.+|+.|+.+.
T Consensus 154 l~~Li~~--~s~~n-~~l~~ddi~vFplLRnlt 183 (215)
T COG2999 154 LDKLIVG--PSAVN-GELSEDDILVFPLLRNLT 183 (215)
T ss_pred HHHHhcC--cchhc-cccchhhhhhhHHhccce
Confidence 9998886 33233 469999999999998764
No 55
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=99.73 E-value=1.2e-16 Score=114.38 Aligned_cols=167 Identities=18% Similarity=0.179 Sum_probs=113.3
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHHh------
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEE------ 75 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~~------ 75 (177)
++||.+..||||-+||.+|.+.|+||++++|++.. ..-++-+...+||+|...|..+.||..|+.-|..
T Consensus 91 l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~-----r~eIk~SsykKVPil~~~Geqm~dSsvIIs~laTyLq~~~ 165 (370)
T KOG3029|consen 91 LVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVL-----RQEIKWSSYKKVPILLIRGEQMVDSSVIISLLATYLQDKR 165 (370)
T ss_pred EEEEeeccCchHHHHHHHHhhcCCceEEEEecchh-----hhhccccccccccEEEeccceechhHHHHHHHHHHhccCC
Confidence 57999999999999999999999999999999753 2223456788999999877789999999887743
Q ss_pred --------hCCCCCCCCC-----------------------CHHHHHHHHHHHHHHhccccchhHHHHHH----------
Q 030456 76 --------KYPQPPLLPS-----------------------DLKRKAINYQAANIVSSSIQPLQNLAVVK---------- 114 (177)
Q Consensus 76 --------~~~~~~l~p~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 114 (177)
-||..+++.+ +.+.+.+-+.|..|+++++..+++.-.++
T Consensus 166 q~l~eiiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~EsletFe 245 (370)
T KOG3029|consen 166 QDLGEIIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESLETFE 245 (370)
T ss_pred CCHHHHHHhccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHHHHHH
Confidence 2331111100 12334456778888877644333221111
Q ss_pred -----------------------------HHHhhcCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHHHH
Q 030456 115 -----------------------------YIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLICIWHR 165 (177)
Q Consensus 115 -----------------------------~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~ 165 (177)
...++..........++.+.+.++.+-..|+. .++||.|++|++||++++
T Consensus 246 wf~q~G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~Wvaalgk-nr~flGG~kPnLaDLsvf 324 (370)
T KOG3029|consen 246 WFSQAGEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQWVAALGK-NRPFLGGKKPNLADLSVF 324 (370)
T ss_pred HHHHcCCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhCC-CCCccCCCCCchhhhhhh
Confidence 00000000111223566677777777777764 489999999999999999
Q ss_pred HHHHHhhcC
Q 030456 166 SFMQRSTGS 174 (177)
Q Consensus 166 ~~l~~~~~~ 174 (177)
+.++-+.++
T Consensus 325 Gvl~sm~gc 333 (370)
T KOG3029|consen 325 GVLRSMEGC 333 (370)
T ss_pred hhhhHhhhh
Confidence 999887653
No 56
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.72 E-value=3.3e-17 Score=97.74 Aligned_cols=68 Identities=38% Similarity=0.450 Sum_probs=61.3
Q ss_pred ccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHH
Q 030456 6 SYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (177)
Q Consensus 6 ~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~ 74 (177)
....|+++++++++|+++|++|+.+.++...+ ...++|.+.||.+++|+|+++|.+++||.+|++||.
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~-~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTP-DTRARILEFSPTGKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCc-cccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHHhC
Confidence 45779999999999999999999999987653 356899999999999999999999999999999984
No 57
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.70 E-value=1.1e-16 Score=94.38 Aligned_cols=71 Identities=49% Similarity=0.790 Sum_probs=63.3
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHH
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~ 74 (177)
++||++..||+|++++++|+++|++|+.+.++..... ..++.+.+|.+++|+|+++|..++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGE--QEEFLALNPLGKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCC--CHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999998865432 2268889999999999999999999999999984
No 58
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.65 E-value=6.7e-16 Score=91.89 Aligned_cols=58 Identities=28% Similarity=0.289 Sum_probs=53.2
Q ss_pred CCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHHhh
Q 030456 9 RSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEK 76 (177)
Q Consensus 9 ~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~~~ 76 (177)
.||+|++++++|+++|+||+.+.++.. ..||.+++|+|+++|..++||.+|++||+++
T Consensus 15 ~sp~~~~v~~~L~~~~i~~~~~~~~~~----------~~~p~g~vP~l~~~g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 15 LSPECLKVETYLRMAGIPYEVVFSSNP----------WRSPTGKLPFLELNGEKIADSEKIIEYLKKK 72 (72)
T ss_pred CCHHHHHHHHHHHhCCCceEEEecCCc----------ccCCCcccCEEEECCEEEcCHHHHHHHHhhC
Confidence 799999999999999999999988742 1789999999999999999999999999874
No 59
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=99.62 E-value=1.3e-14 Score=103.31 Aligned_cols=152 Identities=16% Similarity=0.115 Sum_probs=105.4
Q ss_pred CCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHHhhCCCCCCCCCCH
Q 030456 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQPPLLPSDL 87 (177)
Q Consensus 8 ~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~~~~~~~~l~p~~~ 87 (177)
..||+|.++..+|...+|||+.+.-.+ ...++.|++|.++-+|.-++||.-|..+|.+.++-+..+ ++
T Consensus 59 nLSPfClKvEt~lR~~~IpYE~~~~~~----------~~rSr~G~lPFIELNGe~iaDS~~I~~~L~~hf~~~~~L--~~ 126 (281)
T KOG4244|consen 59 NLSPFCLKVETFLRAYDIPYEIVDCSL----------KRRSRNGTLPFIELNGEHIADSDLIEDRLRKHFKIPDDL--SA 126 (281)
T ss_pred CCChHHHHHHHHHHHhCCCceeccccc----------eeeccCCCcceEEeCCeeccccHHHHHHHHHHcCCCCCC--CH
Confidence 469999999999999999999775442 246788999999999999999999999999998743323 33
Q ss_pred HHHHHHHHHHHHHhccccch------------------------hHHHHHHHH-----Hhh----c-C--ccHHHHHHHH
Q 030456 88 KRKAINYQAANIVSSSIQPL------------------------QNLAVVKYI-----EEK----A-G--ADERDIWAKT 131 (177)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~-----~~~----~-~--~~~~~~~~~~ 131 (177)
.+++..+.+...+++++.-+ ......+.. .+. . + ..-..++..+
T Consensus 127 e~~a~s~Al~rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~kv~~r~~g~IG~f~~~Ei~e 206 (281)
T KOG4244|consen 127 EQRAQSRALSRMADNHLFWILLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKKVYKRSTGAIGDFESAEIDE 206 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHHhhccccCcCHHHHHH
Confidence 44445444443333321100 000001111 000 0 0 0011234777
Q ss_pred HHHHHHHHHHHHHhccCCCccccCCchHHHHHHHHHHHHhhc
Q 030456 132 HIGKGFAALEKLLKDYAGKYATGDEVFLICIWHRSFMQRSTG 173 (177)
Q Consensus 132 ~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~~~l~~~~~ 173 (177)
.+.+.|+.+++.|++ ++||.|+++|-+|+.+|+.|..+..
T Consensus 207 ll~rDlr~i~~~Lg~--KkflfGdkit~~DatvFgqLa~v~Y 246 (281)
T KOG4244|consen 207 LLHRDLRAISDYLGD--KKFLFGDKITPADATVFGQLAQVYY 246 (281)
T ss_pred HHHHHHHHHHHHhCC--CccccCCCCCcceeeehhhhhheec
Confidence 788999999999998 9999999999999999999987654
No 60
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=5.3e-14 Score=100.79 Aligned_cols=160 Identities=21% Similarity=0.255 Sum_probs=113.9
Q ss_pred eeecccCCCchhHHHHHHHHHcCCc--ceEEEeecCC---CCCCChh------------------hhhcCC----CCccc
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLE--YEYKAVNLVK---GEQFSPD------------------FLKINP----IGYVP 54 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~--~~~~~v~~~~---~~~~~~~------------------~~~~~p----~~~~P 54 (177)
+.||.+..|||++|..++=+.||++ ..+..|.... +-...++ |.+..| .-+||
T Consensus 52 YhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvTVP 131 (324)
T COG0435 52 YHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRVTVP 131 (324)
T ss_pred EEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCceeEE
Confidence 6799999999999999999999997 2222232221 1111111 111122 23689
Q ss_pred eEEeC--Cee-eeeHHHHHHHHHhhCCC-----CCCCCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHhhcCccHHH
Q 030456 55 ALVDG--DFV-VSDSFAILMYLEEKYPQ-----PPLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERD 126 (177)
Q Consensus 55 ~L~~~--~~~-l~es~~I~~~l~~~~~~-----~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (177)
||-|. .++ -.||..|++-++..+.+ ..++|.. .+.+++.+..++-..+.+-+ + .-+....+++.
T Consensus 132 VLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~~--Lr~eId~~n~~Iy~~vNNGV----Y--k~GFA~tq~aY 203 (324)
T COG0435 132 VLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPEA--LRTEIDELNKWIYDTVNNGV----Y--KAGFATTQEAY 203 (324)
T ss_pred EEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCHH--HHHHHHHHHhhhcccccCce----e--eecccchHHHH
Confidence 99974 344 48999999999887642 4577754 57788888888877665432 1 11233455777
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHHHHHHHHHh
Q 030456 127 IWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLICIWHRSFMQRS 171 (177)
Q Consensus 127 ~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~~~l~~~ 171 (177)
+.....+-+.|+.+|+.|++ +.|++|+++|.||+-+++.|.++
T Consensus 204 eea~~~lF~~Ld~lE~~L~~--~ryl~Gd~lTEAD~RLftTlvRF 246 (324)
T COG0435 204 EEAVKKLFEALDKLEQILSE--RRYLTGDQLTEADIRLFTTLVRF 246 (324)
T ss_pred HHHHHHHHHHHHHHHHHhhc--CeeeccccchHhhhhhhheeEee
Confidence 88888899999999999999 99999999999999999988654
No 61
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=1.9e-12 Score=89.11 Aligned_cols=157 Identities=17% Similarity=0.179 Sum_probs=115.7
Q ss_pred CCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHHhhCCC-CCCCCCC
Q 030456 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQ-PPLLPSD 86 (177)
Q Consensus 8 ~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~~~~~~-~~l~p~~ 86 (177)
+....|..|..+|..+++||.++... +++| ++|.|++|.|..|.++++|-.+|..+...+.-. .+.. +
T Consensus 32 ~d~ascLAVqtfLrMcnLPf~v~~~~-------Naef--mSP~G~vPllr~g~~~~aef~pIV~fVeak~~~l~s~l--s 100 (257)
T KOG3027|consen 32 PDNASCLAVQTFLRMCNLPFNVRQRA-------NAEF--MSPGGKVPLLRIGKTLFAEFEPIVDFVEAKGVTLTSWL--S 100 (257)
T ss_pred ccchhHHHHHHHHHHcCCCceeeecC-------Cccc--cCCCCCCceeeecchhhhhhhHHHHHHHHhccchhhhh--h
Confidence 34568999999999999999988654 5666 789999999999999999999999999998642 1222 4
Q ss_pred HHHHHHHHHHHHHHhccccchh--HH------------------------HHHHHHHhh--------cC-ccHHHHHHHH
Q 030456 87 LKRKAINYQAANIVSSSIQPLQ--NL------------------------AVVKYIEEK--------AG-ADERDIWAKT 131 (177)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~--~~------------------------~~~~~~~~~--------~~-~~~~~~~~~~ 131 (177)
..+++.++..+..+++.+.-.= -. .+.++.+.. .+ +....+.+.+
T Consensus 101 E~qkadmra~vslVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W~~~~~DqVie 180 (257)
T KOG3027|consen 101 EDQKADMRAYVSLVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDWDDKTMDQVIE 180 (257)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCcccccHHHHHH
Confidence 5567777777777766422100 00 000010000 00 1233577888
Q ss_pred HHHHHHHHHHHHHhccCCCccccCCchHHHHHHHHHHHHhhcCCCC
Q 030456 132 HIGKGFAALEKLLKDYAGKYATGDEVFLICIWHRSFMQRSTGSTLT 177 (177)
Q Consensus 132 ~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~~~l~~~~~~~~~ 177 (177)
++..+++.|+..|+. ++|+.|++||-+|..+|+.+..+....|+
T Consensus 181 ~vdkc~~aLsa~L~~--q~yf~g~~P~elDAlvFGHlytilTt~Lp 224 (257)
T KOG3027|consen 181 QVDKCCRALSAQLGS--QPYFTGDQPTELDALVFGHLYTILTTRLP 224 (257)
T ss_pred HHHHHHHHHHHHhcC--CCccCCCCccHHHHHHHhhhHHhhhhcCC
Confidence 899999999999998 99999999999999999999998876654
No 62
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.49 E-value=1.5e-13 Score=81.21 Aligned_cols=60 Identities=22% Similarity=0.321 Sum_probs=50.2
Q ss_pred CCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHHhh
Q 030456 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEK 76 (177)
Q Consensus 8 ~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~~~ 76 (177)
..+++|.|++++|++.|+||+.+.. .+ .+ ..+|.|+||+|++||.+++||.+|+.||.++
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~--~~-----~~--~~~P~GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCR--AN-----AE--FMSPSGKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEec--CC-----cc--ccCCCCcccEEEECCEEEeCHHHHHHHHhcC
Confidence 4689999999999999999998832 11 11 2567899999999999999999999999864
No 63
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=7.2e-13 Score=94.23 Aligned_cols=161 Identities=22% Similarity=0.158 Sum_probs=108.9
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcc--eEEEeecCCCCCCChhhhh------------------------------cCC
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEY--EYKAVNLVKGEQFSPDFLK------------------------------INP 49 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~--~~~~v~~~~~~~~~~~~~~------------------------------~~p 49 (177)
+-||....|||++|..+.++.||+.= -...+... .+.+...|.. ..|
T Consensus 38 yhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~-~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~p 116 (319)
T KOG2903|consen 38 YHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWH-LDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIASP 116 (319)
T ss_pred EEEEEeccCcHHHHHHHHHHHcCccccceeEEeccc-cCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcCC
Confidence 57999999999999999999999851 11111110 0111111111 112
Q ss_pred ----CCccceEEeC---CeeeeeHHHHHHHHHh---------hCCCCCCCCCCHHHHHHHHHHHHHHhccccchhHHHHH
Q 030456 50 ----IGYVPALVDG---DFVVSDSFAILMYLEE---------KYPQPPLLPSDLKRKAINYQAANIVSSSIQPLQNLAVV 113 (177)
Q Consensus 50 ----~~~~P~L~~~---~~~l~es~~I~~~l~~---------~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (177)
.-+||||=|- ..+-.||..|++.+.. .++...|.|.+ .++.++.+..|+-+.+.+-+ +
T Consensus 117 ~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~~--L~~~Ide~N~wvy~~INNGV----Y 190 (319)
T KOG2903|consen 117 NYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPSS--LRAQIDETNSWVYDKINNGV----Y 190 (319)
T ss_pred CCCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCHH--HHHHHhhhhceecccccCce----e
Confidence 1268999974 3345999999999993 23334567654 57788888888776654322 1
Q ss_pred HHHHhhcCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHHHHHHHHHh
Q 030456 114 KYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLICIWHRSFMQRS 171 (177)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~~~l~~~ 171 (177)
+- +....++.-+.....+-+.|+.+|++|+++.+.|+||+++|.|||-+++.+-++
T Consensus 191 k~--GFA~~~e~Ye~~V~~lfe~LDr~E~vL~~~~~~f~~G~~LTeaDirLy~TiIRF 246 (319)
T KOG2903|consen 191 KC--GFAEKQEAYEEEVNQLFEALDRCEDVLGKNRKYFLCGDTLTEADIRLYTTIIRF 246 (319)
T ss_pred ee--ccccccchHHHHHHHHHHHHHHHHHHHhcccceEeeccccchhheeeeeeEEee
Confidence 11 223345677777888899999999999995455999999999999998876543
No 64
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=99.30 E-value=2.5e-11 Score=79.02 Aligned_cols=90 Identities=17% Similarity=0.086 Sum_probs=67.5
Q ss_pred CCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHhh--------cCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccC
Q 030456 84 PSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEK--------AGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGD 155 (177)
Q Consensus 84 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~ 155 (177)
|.++.+++++++|+.+..+.+.+.+........... ...+...+.....+.+.++.+|++|++ ++|++|+
T Consensus 2 ~~~~~~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~Gd 79 (119)
T cd03189 2 PPDTAEYADYLYWLHFAEGSLMPPLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFLEDRLAK--KGYFVGD 79 (119)
T ss_pred CCCHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHcc--CCCCCCC
Confidence 568889999999999998888776543222211111 012344556777899999999999987 8999999
Q ss_pred CchHHHHHHHHHHHHhhcCC
Q 030456 156 EVFLICIWHRSFMQRSTGST 175 (177)
Q Consensus 156 ~~t~aDi~l~~~l~~~~~~~ 175 (177)
++|+|||++++.+.++...+
T Consensus 80 ~~t~ADi~l~~~~~~~~~~~ 99 (119)
T cd03189 80 KLTAADIMMSFPLEAALARG 99 (119)
T ss_pred CCCHHHHHHHHHHHHHHHcC
Confidence 99999999999988876544
No 65
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.26 E-value=2.1e-11 Score=73.65 Aligned_cols=71 Identities=15% Similarity=0.186 Sum_probs=60.6
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHH
Q 030456 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (177)
Q Consensus 1 m~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~ 74 (177)
+++||+.++||+|.+++.+|+..|++|+.+.++-. ....++...++..++|++..||..+.++..|.+||.
T Consensus 9 ~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~---~~~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 9 SVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGND---ARGRSLRAVTGATTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCC---hHHHHHHHHHCCCCcCeEEECCEEEcCHHHHHHHhC
Confidence 47899999999999999999999999998877532 123456666778899999999999999999999984
No 66
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=99.26 E-value=8.4e-11 Score=76.78 Aligned_cols=89 Identities=37% Similarity=0.562 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHhccccchhHHHHHHHHHhhcC--ccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHHHH
Q 030456 88 KRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAG--ADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLICIWHR 165 (177)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~ 165 (177)
.+++.+++|+.++.+.+.+............... .+...+...+.+.+.|+.+|++|++++++|++|+++|+|||+++
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~~~ 81 (121)
T cd03191 2 KKRARVRALALIIACDIHPLNNLRVLKYLTEELGLDEEAKNAWYRHWIARGFAALEKLLAQTAGKFCFGDEPTLADICLV 81 (121)
T ss_pred hhHHHHHHHHHHHHccCCccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecCCcCCHHHHHHH
Confidence 4688999999999988876533333222211111 12334556677899999999999853358999999999999999
Q ss_pred HHHHHhhcCCC
Q 030456 166 SFMQRSTGSTL 176 (177)
Q Consensus 166 ~~l~~~~~~~~ 176 (177)
+.+.++...++
T Consensus 82 ~~~~~~~~~~~ 92 (121)
T cd03191 82 PQVYNARRFGV 92 (121)
T ss_pred HHHHHHHHhCC
Confidence 99988765553
No 67
>PRK10638 glutaredoxin 3; Provisional
Probab=99.23 E-value=3.7e-11 Score=73.28 Aligned_cols=72 Identities=13% Similarity=0.151 Sum_probs=61.7
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHHh
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEE 75 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~~ 75 (177)
+++|+.+.||+|++++.+|+++|++|+.+.++... ...+++.+.++..++|++..||..+.+...+..+-.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~--~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~~ 75 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDA--AKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDAR 75 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCH--HHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHc
Confidence 78999999999999999999999999998886432 2357788899999999999999999998887776543
No 68
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=99.19 E-value=1.6e-10 Score=74.95 Aligned_cols=89 Identities=13% Similarity=-0.051 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHHHHHhccccchhHHHHHHHHH------hhcCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchH
Q 030456 86 DLKRKAINYQAANIVSSSIQPLQNLAVVKYIE------EKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFL 159 (177)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ 159 (177)
++.+++.+++|+.++...+.+.+......... .....+...+....++.+.|+.+|++|++ ++|++|+++|+
T Consensus 1 d~~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~--~~~l~gd~~t~ 78 (117)
T cd03182 1 TPLERAQIEMWQRRAELQGLYPIGQAFRHATPGLKPPDREEQVPEWGERSKARAADFLAYLDTRLAG--SPYVAGDRFTI 78 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccCHHHHHHHHHHHHHHHHHHHHHhcC--CCcccCCCCCH
Confidence 45688999999999887776554433322111 01223456678888999999999999987 78999999999
Q ss_pred HHHHHHHHHHHhhcCCC
Q 030456 160 ICIWHRSFMQRSTGSTL 176 (177)
Q Consensus 160 aDi~l~~~l~~~~~~~~ 176 (177)
|||++++.+.++...|+
T Consensus 79 aDi~l~~~~~~~~~~~~ 95 (117)
T cd03182 79 ADITAFVGLDFAKVVKL 95 (117)
T ss_pred HHHHHHHHhHHHHhcCC
Confidence 99999999988876553
No 69
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=99.18 E-value=1.2e-10 Score=75.06 Aligned_cols=85 Identities=14% Similarity=-0.010 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHHHHHHH
Q 030456 89 RKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLICIWHRSFM 168 (177)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~~~l 168 (177)
+++++++|+.+.+..+.+.+..............+...+.....+.+.++.+|+.|++ ++|++|+++|+|||++++.+
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aDi~l~~~~ 78 (113)
T cd03178 1 ERYEVLQWLFFQMGGLGPMFGQAGHFSRYAPEKIPYAIERYTNEAKRLYGVLDKRLAG--RDYLAGDEYSIADIAIFPWV 78 (113)
T ss_pred ChHHHHHHHHHHHccCCCcchHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHcc--CCcccCCCCCeeeeeHHHHH
Confidence 3678999999999988876543322211112233456677888999999999999987 89999999999999999999
Q ss_pred HHhhcCC
Q 030456 169 QRSTGST 175 (177)
Q Consensus 169 ~~~~~~~ 175 (177)
.++...+
T Consensus 79 ~~~~~~~ 85 (113)
T cd03178 79 RRLEWIG 85 (113)
T ss_pred HHHHhcc
Confidence 8876543
No 70
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.18 E-value=1.2e-10 Score=69.10 Aligned_cols=71 Identities=15% Similarity=0.165 Sum_probs=59.8
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHH
Q 030456 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (177)
Q Consensus 1 m~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~ 74 (177)
++++|+.+.||+|.+++.+|...|++|+.+.++... ....+.......++|++..||..+.++..|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~---~~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDI---TGRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCCh---hHHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHhC
Confidence 478999999999999999999999999988876432 23344455677899999999999999999999974
No 71
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=99.16 E-value=1.6e-10 Score=68.58 Aligned_cols=59 Identities=22% Similarity=0.205 Sum_probs=50.7
Q ss_pred CCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHHhh
Q 030456 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEK 76 (177)
Q Consensus 8 ~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~~~ 76 (177)
+.||+|.++.++|..+|+||+.+...- -..+|.|++|+|+++|+.+.||..|++||.++
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~~n----------~~~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPSNN----------PWRSPTGKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEecCC----------CCCCCCCccCEEEECCEEecChHHHHHHHHHc
Confidence 457999999999999999998774431 13568999999999999999999999999875
No 72
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.15 E-value=2.5e-10 Score=72.86 Aligned_cols=79 Identities=13% Similarity=0.095 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHhccccchhHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHHHHHH
Q 030456 88 KRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLICIWHRSF 167 (177)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~~~ 167 (177)
.++++++.|+.++...+.+.+..... . .++..+...+.+.+.|+.+|++|++ ++|++|+++|+|||++++.
T Consensus 2 ~~ra~~r~w~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aDi~~~~~ 72 (107)
T cd03186 2 VARARSRLLMHRIEQDWYPLVDTIEK----G---RKKEAEKARKELRESLLALAPVFAH--KPYFMSEEFSLVDCALAPL 72 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh----C---cHHHHHHHHHHHHHHHHHHHHHHcC--CCcccCCCCcHHHHHHHHH
Confidence 46889999999998877665532221 1 1344667888899999999999987 8999999999999999999
Q ss_pred HHHhhcCC
Q 030456 168 MQRSTGST 175 (177)
Q Consensus 168 l~~~~~~~ 175 (177)
+.++...|
T Consensus 73 ~~~~~~~~ 80 (107)
T cd03186 73 LWRLPALG 80 (107)
T ss_pred HHHHHHcC
Confidence 87665444
No 73
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=99.15 E-value=2.5e-10 Score=74.64 Aligned_cols=81 Identities=14% Similarity=0.095 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhccccchhHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHHHHHHHH
Q 030456 90 KAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLICIWHRSFMQ 169 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~~~l~ 169 (177)
++.+++|+.++...+.+.+.............+....+...+.+.+.|+.+|++|+. ++|++|+++|+|||++++.+.
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~--~~~l~G~~~siaDi~l~~~~~ 79 (123)
T cd03181 2 EAQVLQWVSFANTELLPAVAAWFLPLLGIAPYNKKSVEAALEELDRVLGVLEERLLK--RTYLVGERLTLADIFVAGALL 79 (123)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHHHcc--CceeccCCccHHHHHHHHHHH
Confidence 678899999999888876654433322212223455678888999999999999997 789999999999999999988
Q ss_pred Hhh
Q 030456 170 RST 172 (177)
Q Consensus 170 ~~~ 172 (177)
++.
T Consensus 80 ~~~ 82 (123)
T cd03181 80 LGF 82 (123)
T ss_pred HHH
Confidence 864
No 74
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.14 E-value=4.8e-10 Score=71.75 Aligned_cols=81 Identities=17% Similarity=0.060 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHHhh--cCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHHHHH
Q 030456 89 RKAINYQAANIVSSSIQPLQNLAVVKYIEEK--AGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLICIWHRS 166 (177)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~~ 166 (177)
+++.+++|+.+..+.+.+.+........... ...+...+...+.+.+.|+.+|++|++ ++|++|+++|+|||++++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~--~~~l~g~~~t~aDi~~~~ 79 (110)
T cd03180 2 ARARADRWMDWQTSTLNPAFRYAFWGLVRTPPEQRDPAAIAASLAAWAKLMAILDAQLAG--RPYLAGDRFTLADIPLGC 79 (110)
T ss_pred chhHHHHHHHHHHhhcChHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHHHHHHHhCC--CCcccCCCCCHHHHHHHH
Confidence 4788999999998888877654433222111 123345667788999999999999987 899999999999999998
Q ss_pred HHHHh
Q 030456 167 FMQRS 171 (177)
Q Consensus 167 ~l~~~ 171 (177)
.+...
T Consensus 80 ~~~~~ 84 (110)
T cd03180 80 SAYRW 84 (110)
T ss_pred HHHHH
Confidence 88543
No 75
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=99.14 E-value=1.8e-10 Score=74.22 Aligned_cols=85 Identities=18% Similarity=0.160 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHHh--hcCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHHHHH
Q 030456 89 RKAINYQAANIVSSSIQPLQNLAVVKYIEE--KAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLICIWHRS 166 (177)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~~ 166 (177)
+++.+++|+.+..+.+.+.+.......... ....+...+.....+.+.++.+|++|++ ++|++|+++|+|||++++
T Consensus 2 ~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~--~~~l~G~~~t~aDi~~~~ 79 (114)
T cd03188 2 ERARLLEWLNFLSSELHKAFGPLFYPARWATDEAAQEEVKAAARERLAARLAYLDAQLAG--GPYLLGDRFSVADAYLFV 79 (114)
T ss_pred cHHHHHHHHHHHhhhhchhhhhcccccccccChhhHHHHHHHHHHHHHHHHHHHHHHhcC--CCeeeCCCcchHHHHHHH
Confidence 478899999999888877654332221100 0112344667788899999999999986 899999999999999999
Q ss_pred HHHHhhcCC
Q 030456 167 FMQRSTGST 175 (177)
Q Consensus 167 ~l~~~~~~~ 175 (177)
.+.++...+
T Consensus 80 ~~~~~~~~~ 88 (114)
T cd03188 80 VLRWAPGVG 88 (114)
T ss_pred HHHHHhhcC
Confidence 998876544
No 76
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=1.7e-08 Score=74.19 Aligned_cols=155 Identities=18% Similarity=0.152 Sum_probs=107.5
Q ss_pred CCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEe-CCeeeeeHHHHHHHHHhhCCCCCCCCCC-
Q 030456 9 RSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVD-GDFVVSDSFAILMYLEEKYPQPPLLPSD- 86 (177)
Q Consensus 9 ~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~-~~~~l~es~~I~~~l~~~~~~~~l~p~~- 86 (177)
.++.|.++.+++..++-|.++...+. .+ ..|.|++|+|+. +|+.++.-..|..+|...-.+..+-+..
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~ssN-------~~---~s~sg~LP~l~~~ng~~va~~~~iv~~L~k~~~ky~~d~dl~ 85 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVSSN-------PW---RSPSGKLPYLITDNGTKVAGPVKIVQFLKKNTKKYNLDADLS 85 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEeecC-------CC---CCCCCCCCeEEecCCceeccHHHHHHHHHHhcccCCcCccHH
Confidence 37899999999999997766554442 22 468899999996 5699999999999999942222233332
Q ss_pred HHHHHHHHHHHHHHhccccchhHHHH---------------HHHH--------------------Hhhc-CccHHHHHHH
Q 030456 87 LKRKAINYQAANIVSSSIQPLQNLAV---------------VKYI--------------------EEKA-GADERDIWAK 130 (177)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~--------------------~~~~-~~~~~~~~~~ 130 (177)
..+.+....|+.++...+.++..... .... .... ...+..+...
T Consensus 86 ~kq~a~~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~~qAk~rl~l~~g~~~~~e~~i~ 165 (313)
T KOG3028|consen 86 AKQLADTLAFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQRQAKERLQLTLGELTEREDQIY 165 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhHHHHHHHHHHHhCCchhhHHHHH
Confidence 45666667777777665444322111 1000 0001 1223456667
Q ss_pred HHHHHHHHHHHHHHhccCCCccccCCchHHHHHHHHHHHHhhcCC
Q 030456 131 THIGKGFAALEKLLKDYAGKYATGDEVFLICIWHRSFMQRSTGST 175 (177)
Q Consensus 131 ~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~~~l~~~~~~~ 175 (177)
....+.+..++++|+. ++|++||+||--|..++..+..+....
T Consensus 166 ~~Aska~~~LS~~Lgs--~kffFgd~psslDa~lfs~la~~~~~~ 208 (313)
T KOG3028|consen 166 KDASKALNLLSTLLGS--KKFFFGDKPSSLDALLFSYLAILLQVA 208 (313)
T ss_pred HHHHHHHHHHHHHhcC--ceEeeCCCCchHHHHHHHHHHHHHhcc
Confidence 7788999999999998 999999999999999999998865543
No 77
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.11 E-value=1.8e-10 Score=73.14 Aligned_cols=86 Identities=14% Similarity=0.104 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhccccchhHHHHHH--HHHhhcCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHHHHH
Q 030456 89 RKAINYQAANIVSSSIQPLQNLAVVK--YIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLICIWHRS 166 (177)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~~ 166 (177)
+++.+++|+.+..+.+.+.+...... ........++..+....++.+.++.+|+.|++ ++|++|+++|+|||++++
T Consensus 2 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~g~~~slaDi~~~~ 79 (105)
T cd03179 2 ERAQVLRWLFFEQYSHEPYIATLRFLRVYLGLGEADAEVLAFLRERGHAALAVLEAHLAG--RDFLVGDALTIADIALAA 79 (105)
T ss_pred cHHHHHHHHHHhhcccCccceeeeeeEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHcc--CccccCCCCCHHHHHHHH
Confidence 47889999999888777654322111 11122334566778889999999999999976 789999999999999999
Q ss_pred HHHHhhcCCC
Q 030456 167 FMQRSTGSTL 176 (177)
Q Consensus 167 ~l~~~~~~~~ 176 (177)
.+.++...++
T Consensus 80 ~~~~~~~~~~ 89 (105)
T cd03179 80 YTHVADEGGF 89 (105)
T ss_pred HHHhccccCC
Confidence 9998865543
No 78
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=99.09 E-value=8e-10 Score=71.65 Aligned_cols=82 Identities=18% Similarity=0.173 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhccccchhHHHHHH-HHH---hhcCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHHH
Q 030456 89 RKAINYQAANIVSSSIQPLQNLAVVK-YIE---EKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLICIWH 164 (177)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l 164 (177)
+++++.+|+.+..+.+.+.+...... ... ....+++..+.....+.+.++.+|++|++ ++|++|+++|+|||++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aDi~l 79 (118)
T cd03187 2 ERAIVEQWLEVESHQFDPPASALAFELVFKPMLGLPTDEAVVEENEEKLKKVLDVYEARLSK--SKYLAGDSFTLADLSH 79 (118)
T ss_pred chHHHHHHHHHHHhhcchhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHccc--CcccCCCCccHHHHHH
Confidence 46788999999888877665433221 111 11223455566778899999999999987 8999999999999999
Q ss_pred HHHHHHhh
Q 030456 165 RSFMQRST 172 (177)
Q Consensus 165 ~~~l~~~~ 172 (177)
++.+.++.
T Consensus 80 ~~~~~~~~ 87 (118)
T cd03187 80 LPYLQYLM 87 (118)
T ss_pred HHHHHHHH
Confidence 99987765
No 79
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=99.08 E-value=5e-10 Score=65.76 Aligned_cols=50 Identities=26% Similarity=0.236 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHHHHHHHHHhhcCC
Q 030456 124 ERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLICIWHRSFMQRSTGST 175 (177)
Q Consensus 124 ~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~~~l~~~~~~~ 175 (177)
.+.+...+.+.+.|+.+|++|++ ++|++|++||+|||++++.+.++...+
T Consensus 2 ~~~~~~~~~~~~~l~~le~~L~~--~~fl~G~~~s~aD~~l~~~l~~~~~~~ 51 (69)
T PF13410_consen 2 AAVERARAQLEAALDALEDHLAD--GPFLFGDRPSLADIALAPFLWRLRFVG 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT--SSBTTBSS--HHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh--CCCCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 45678889999999999999998 779999999999999999999988765
No 80
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.06 E-value=7.1e-10 Score=71.83 Aligned_cols=81 Identities=12% Similarity=-0.036 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHHHHHhccccchhHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHHHH
Q 030456 86 DLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLICIWHR 165 (177)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~ 165 (177)
++..++.+++|..+....+.+.+....+...... +..+...+.+.+.++.+|++|++ ++|++|+++|+|||+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~l~~le~~L~~--~~yl~Gd~~tlADi~l~ 76 (115)
T cd03196 3 DPAALKEMLALIAENDNEFKHHLDRYKYADRYPE----ESEEEYRQQAEAFLKDLEARLQQ--HSYLLGDKPSLADWAIF 76 (115)
T ss_pred chHHHHHHHHHHHHcchhhHHHHHhccchhhcCc----ccHHHHHHHHHHHHHHHHHHHcc--CCccCCCCccHHHHHHH
Confidence 6788999999999999888766654333322111 23667788999999999999998 79999999999999999
Q ss_pred HHHHHhh
Q 030456 166 SFMQRST 172 (177)
Q Consensus 166 ~~l~~~~ 172 (177)
+.+.++.
T Consensus 77 ~~l~~~~ 83 (115)
T cd03196 77 PFVRQFA 83 (115)
T ss_pred HHHHHHH
Confidence 9887654
No 81
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=99.06 E-value=1.1e-09 Score=71.21 Aligned_cols=80 Identities=14% Similarity=0.106 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHHHHHHH
Q 030456 89 RKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLICIWHRSFM 168 (177)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~~~l 168 (177)
+++++.+|+.+..+.+.+.+.......... .+...+...+.+.+.++.+|++|++ ++|++|+++|+||+++++.+
T Consensus 2 ~~a~~~~wl~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~s~aDi~l~~~~ 76 (118)
T cd03177 2 KRAIVNQRLHFDSGTLYQRLRDYYYPILFG---GAEPPEEKLDKLEEALDFLETFLEG--SDYVAGDQLTIADLSLVATV 76 (118)
T ss_pred hHHHHHHHHHhhhchHHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHHHHHHcc--CCeeCCCCcCHHHHHHHHHH
Confidence 467889999998777776554333332211 1233456677899999999999987 78999999999999999999
Q ss_pred HHhhc
Q 030456 169 QRSTG 173 (177)
Q Consensus 169 ~~~~~ 173 (177)
.++..
T Consensus 77 ~~~~~ 81 (118)
T cd03177 77 STLEA 81 (118)
T ss_pred HHHHH
Confidence 88764
No 82
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.05 E-value=5.1e-10 Score=66.29 Aligned_cols=71 Identities=20% Similarity=0.190 Sum_probs=56.3
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeee--eeHHHHHHHH
Q 030456 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVV--SDSFAILMYL 73 (177)
Q Consensus 1 m~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l--~es~~I~~~l 73 (177)
|+++|+.++||+|++++.+|+++|++|..+.++-. .....++.+.++...+|+++.+|..+ .+...|.++|
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~--~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKD--SAAREEVLKVLGQRGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCC--HHHHHHHHHHhCCCcccEEEECCEEEeeCCHHHHHHHh
Confidence 89999999999999999999999999987766522 22235567778889999999988877 5556666554
No 83
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=99.05 E-value=6.6e-10 Score=69.61 Aligned_cols=76 Identities=11% Similarity=0.000 Sum_probs=58.9
Q ss_pred HHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030456 70 LMYLEEKYPQPPLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAG 149 (177)
Q Consensus 70 ~~~l~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~ 149 (177)
+|||.+. .++.|.++.+.+.+++|+++....+. ......+.+.++.+|++|++ +
T Consensus 1 ~r~~~~~---~~~~~~~~~~~~~vd~~~d~~~~~l~---------------------~~~~~~~~~~l~~le~~L~~--~ 54 (96)
T cd03200 1 ARFLYRL---LGPAPNAPNAATNIDSWVDTAIFQLA---------------------EGSSKEKAAVLRALNSALGR--S 54 (96)
T ss_pred CchHHHH---hcccCCCchHHHHHHHHHHHHHHHHh---------------------cCCHHHHHHHHHHHHHHHcC--C
Confidence 4788888 34999999999999999997542111 01223455678889999988 8
Q ss_pred CccccCCchHHHHHHHHHHHHh
Q 030456 150 KYATGDEVFLICIWHRSFMQRS 171 (177)
Q Consensus 150 ~~l~G~~~t~aDi~l~~~l~~~ 171 (177)
+|++|+++|+|||++++.+.+.
T Consensus 55 ~fl~Gd~~tiADi~l~~~l~~~ 76 (96)
T cd03200 55 PWLVGSEFTVADIVSWCALLQT 76 (96)
T ss_pred CccCCCCCCHHHHHHHHHHHHc
Confidence 9999999999999999888754
No 84
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=99.05 E-value=9.2e-10 Score=72.25 Aligned_cols=76 Identities=18% Similarity=0.153 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHhccccchhHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHHHHHH
Q 030456 88 KRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLICIWHRSF 167 (177)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~~~ 167 (177)
.+++++++|+.+....+.+.+..... . .+...+...+.+.+.++.+|++|++ ++|++|+++|+|||++++.
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~ADi~l~~~ 72 (126)
T cd03185 2 YERAVARFWAAFIDDKLFPAGRKVLA----A---KGEEREKAKEEALEALKVLEEELGG--KPFFGGDTIGYVDIALGSF 72 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHc----c---chHHHHHHHHHHHHHHHHHHHHhcC--CCCCCCCCcchHHHHHHHH
Confidence 46888999999988777665433221 1 1345566788899999999999987 7999999999999999998
Q ss_pred HHHhh
Q 030456 168 MQRST 172 (177)
Q Consensus 168 l~~~~ 172 (177)
+.++.
T Consensus 73 ~~~~~ 77 (126)
T cd03185 73 LGWFR 77 (126)
T ss_pred HHHHH
Confidence 88864
No 85
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=99.01 E-value=3e-09 Score=71.48 Aligned_cols=76 Identities=18% Similarity=0.045 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHhccccchhHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHHHHHH
Q 030456 88 KRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLICIWHRSF 167 (177)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~~~ 167 (177)
..++.++.|++|....+.+.+.. .. ...+++..+.....+.+.|+.+|++|++ ++|++|+++|+|||++++.
T Consensus 3 ~~~a~i~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~l~~~l~~LE~~L~~--~~yl~Gd~~TlADi~l~~~ 74 (142)
T cd03190 3 ELRSEIDELNEWIYDNINNGVYK----AG--FATTQEAYDEAVDELFEALDRLEELLSD--RRYLLGDRLTEADIRLFTT 74 (142)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHH----Hh--hccCHHHHHHHHHHHHHHHHHHHHHHcc--CCeeeCCCccHHHHHHHHH
Confidence 45788999999999877655321 11 1233456677888999999999999987 8999999999999999999
Q ss_pred HHHh
Q 030456 168 MQRS 171 (177)
Q Consensus 168 l~~~ 171 (177)
+.++
T Consensus 75 l~~~ 78 (142)
T cd03190 75 LIRF 78 (142)
T ss_pred HHHH
Confidence 8765
No 86
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.99 E-value=1.4e-09 Score=64.63 Aligned_cols=68 Identities=16% Similarity=0.194 Sum_probs=57.1
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHH
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILM 71 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~ 71 (177)
++||+.+.||+|++++.+|+.+||+|+.+.+.-. .....++.+.++..++|++..+|..+.......+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~--~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~ 70 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIF--PERKAELEERTGSSVVPQIFFNEKLVGGLTDLKS 70 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHCCCceEEEECCCC--HHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHh
Confidence 6899999999999999999999999998877632 2345678888999999999999998877665543
No 87
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=98.98 E-value=1.6e-09 Score=71.07 Aligned_cols=76 Identities=14% Similarity=0.107 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHHHHHHH
Q 030456 89 RKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLICIWHRSFM 168 (177)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~~~l 168 (177)
++++.+.|.++++..+.+...... . ++..+...+.+.+.++.+|+.|++++++|++|+++|+|||++++.+
T Consensus 2 ~ra~~r~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~~ 72 (124)
T cd03184 2 EKAQQKLLLERFSKVVSAFYKLLG-----A----PSDREEKKAELRSALENLEEELTKRGTPFFGGDSPGMVDYMIWPWF 72 (124)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHh-----c----cccchhhHHHHHHHHHHHHHHHHhcCCCCcCCCCccHHHHHhhHHH
Confidence 478888999998744433332211 1 3344567778899999999999864579999999999999999999
Q ss_pred HHhhc
Q 030456 169 QRSTG 173 (177)
Q Consensus 169 ~~~~~ 173 (177)
.++..
T Consensus 73 ~~~~~ 77 (124)
T cd03184 73 ERLEA 77 (124)
T ss_pred HHHHH
Confidence 87654
No 88
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=98.94 E-value=5.7e-09 Score=68.55 Aligned_cols=85 Identities=11% Similarity=0.051 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhccccchhHHHHHHH-----HHhhcCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHHH
Q 030456 90 KAINYQAANIVSSSIQPLQNLAVVKY-----IEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLICIWH 164 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l 164 (177)
++.+++|+.+....+.+.+....... .......++..+...+.+.+.++.+|++|.+ +++|++|+++|+|||++
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~-~~~~l~Gd~~t~ADi~l 80 (126)
T cd03183 2 RARVDEYLAWQHTNLRLGCAKYFWQKVLLPLLGGKPVSPEKVKKAEENLEESLDLLENYFLK-DKPFLAGDEISIADLSA 80 (126)
T ss_pred cccHHHHHHHHHhhhHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhc-CCCcccCCCCCHHHHHH
Confidence 45678888888776664433221111 1111224556677888899999999997543 27899999999999999
Q ss_pred HHHHHHhhcCC
Q 030456 165 RSFMQRSTGST 175 (177)
Q Consensus 165 ~~~l~~~~~~~ 175 (177)
++.+.+....+
T Consensus 81 ~~~~~~~~~~~ 91 (126)
T cd03183 81 VCEIMQPEAAG 91 (126)
T ss_pred HHHHHHHHhcC
Confidence 99888876554
No 89
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=98.93 E-value=2e-09 Score=67.36 Aligned_cols=80 Identities=19% Similarity=0.143 Sum_probs=56.4
Q ss_pred HHHHHHHhccccchhHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHHHHHHHHHhhc
Q 030456 94 YQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLICIWHRSFMQRSTG 173 (177)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~~~l~~~~~ 173 (177)
+.|..+....+.+................++..+...+.+.+.++.+|++|++ ++|++|+++|+||+++++.+.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~~~~~g~~~t~aDi~~~~~l~~~~~ 79 (100)
T cd00299 2 RAWEEWADTTLEPAARRLLLLAFVGPEVDEAALEEAREELAAALAALEKLLAG--RPYLAGDRFSLADIALAPVLARLDL 79 (100)
T ss_pred hHHHHHHHhhcCCcccceeeeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHcc--CCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 35666666655544332222111111123456677888899999999999987 8999999999999999999998875
Q ss_pred CC
Q 030456 174 ST 175 (177)
Q Consensus 174 ~~ 175 (177)
.+
T Consensus 80 ~~ 81 (100)
T cd00299 80 LG 81 (100)
T ss_pred hh
Confidence 44
No 90
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.93 E-value=2.6e-09 Score=64.67 Aligned_cols=61 Identities=16% Similarity=0.346 Sum_probs=47.9
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeee
Q 030456 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVS 64 (177)
Q Consensus 1 m~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~ 64 (177)
++++|+.+.||+|.+++.+|+++||+|+.+.++-.. ...+....++..++|+++.++..+.
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~---~~~~~~~~~g~~~vPvv~i~~~~~~ 62 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVP---EAAETLRAQGFRQLPVVIAGDLSWS 62 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCH---HHHHHHHHcCCCCcCEEEECCEEEe
Confidence 478999999999999999999999999998887321 1222234468889999998886543
No 91
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.89 E-value=3.1e-09 Score=68.69 Aligned_cols=86 Identities=17% Similarity=0.070 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHhccccchhHHHHHHH-HHhhcCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHHHHH
Q 030456 88 KRKAINYQAANIVSSSIQPLQNLAVVKY-IEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLICIWHRS 166 (177)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~~ 166 (177)
.++++++.|+.++.+.+.+......... ... ...+...+...+.+.+.+..+|.+|++ +++||+| ++|+||+++++
T Consensus 2 ~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~le~~l~~-~~~~l~G-~fSiAD~~l~~ 78 (114)
T cd03195 2 RQRARARQVQAWLRSDLLPIRVERSTEVVFAG-AKAEPLSEAAQAAAEKLIAVAEALLPP-GAANLFG-EWCIADTDLAL 78 (114)
T ss_pred HhhHHHHHHHHHHHhhHHHHHHhCCccceecC-CCCCCCCHHHHHHHHHHHHHHHHHHhc-CCCcccC-CccHHHHHHHH
Confidence 5788999999999998776521111000 111 111134466777788999999999974 3689999 59999999999
Q ss_pred HHHHhhcCCC
Q 030456 167 FMQRSTGSTL 176 (177)
Q Consensus 167 ~l~~~~~~~~ 176 (177)
.+.|+...|+
T Consensus 79 ~~~~~~~~g~ 88 (114)
T cd03195 79 MLNRLVLNGD 88 (114)
T ss_pred HHHHHHHcCC
Confidence 9999998876
No 92
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=98.88 E-value=2.6e-09 Score=67.30 Aligned_cols=51 Identities=22% Similarity=0.291 Sum_probs=41.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHHHHHHHHHhhc
Q 030456 123 DERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLICIWHRSFMQRSTG 173 (177)
Q Consensus 123 ~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~~~l~~~~~ 173 (177)
....+...+.+.+.+..++++|++++++|++|++||+||+++++.|..++.
T Consensus 30 ~~~~~~~~~~~~~~l~~l~~~L~~~~~~~l~G~~~T~AD~~v~~~l~~~~~ 80 (99)
T PF14497_consen 30 EASGDFSREELPKALKILEKHLAERGGDFLVGDKPTLADIAVFGFLASLRW 80 (99)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTSSSSSSSSS--HHHHHHHHHHHHHHC
T ss_pred hhhHHhhHHHHHHHHHHHHHHHHcCCCeeecCCCCCHHHHHHHHHHHHHhh
Confidence 345678888999999999999999555599999999999999999977663
No 93
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.87 E-value=7.1e-09 Score=60.91 Aligned_cols=69 Identities=13% Similarity=0.122 Sum_probs=57.8
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHH
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMY 72 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~ 72 (177)
+++|+.+.||+|++++.+|..++++|+.+.+... .....++.+.++..++|++..+|..+.++..|.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~--~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLGIEFEEIDILED--GELREELKELSGWPTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCC--HHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHh
Confidence 5799999999999999999999999987766532 22456777788999999999999999999887654
No 94
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.86 E-value=5.4e-09 Score=61.68 Aligned_cols=62 Identities=19% Similarity=0.230 Sum_probs=51.7
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeee
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSD 65 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~e 65 (177)
+++|+.++||+|.+++.+|.++|++|+.+.++.. ....+++.+.++.+.+|+|+++|..+.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~--~~~~~~~~~~~~~~~vP~i~~~~~~i~g 63 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDERGIPFEEVDVDED--PEALEELKKLNGYRSVPVVVIGDEHLSG 63 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCC--HHHHHHHHHHcCCcccCEEEECCEEEec
Confidence 6899999999999999999999999998877642 2345677788899999999998876644
No 95
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.83 E-value=1.6e-08 Score=63.75 Aligned_cols=75 Identities=12% Similarity=0.027 Sum_probs=52.5
Q ss_pred HHHHHHHhccccchhHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHHHHHHHHHhhc
Q 030456 94 YQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLICIWHRSFMQRSTG 173 (177)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~~~l~~~~~ 173 (177)
.+|+.+..+.+.+............ .+...+...+.+.+.++.+|++|++ ++|++|+++|+|||++++.+.+...
T Consensus 2 ~~w~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aDi~~~~~~~~~~~ 76 (100)
T cd03206 2 QRWLSVAAGEIANGPAAARLITLFG---APLDKETAIARAHRLLRLLEEHLAG--RDWLAGDRPTIADVAVYPYVALAPE 76 (100)
T ss_pred ceehhhhhhhcccchhHHHHHHHhC---CHhHHHHHHHHHHHHHHHHHHHHcc--CCccCCCCCCHHHHHHHHHHHHHhc
Confidence 3566777776654332222211111 1224566788899999999999998 7899999999999999999876543
No 96
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=98.83 E-value=1.4e-08 Score=64.42 Aligned_cols=85 Identities=15% Similarity=0.121 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHHHHHHH
Q 030456 89 RKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLICIWHRSFM 168 (177)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~~~l 168 (177)
++++++.+++..++.........+ ...+ ....+...+...+.+.+.++.+|++|.+++++|++|+++|+||+++++.+
T Consensus 2 e~~~v~~~~~~~~d~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~G~~~s~aDi~l~~~~ 79 (104)
T cd03192 2 EAARVDALVDTIADLRAEFAKYFY-EKDG-EEKKEKKKEFLKEAIPKYLKKLEKILKENGGGYLVGDKLTWADLVVFDVL 79 (104)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh-cCch-HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCeeeCCCccHHHHHHHHHH
Confidence 356777777775554333332221 1000 01124556777888999999999999754468999999999999999999
Q ss_pred HHhhcCC
Q 030456 169 QRSTGST 175 (177)
Q Consensus 169 ~~~~~~~ 175 (177)
.++...+
T Consensus 80 ~~~~~~~ 86 (104)
T cd03192 80 DYLLYLD 86 (104)
T ss_pred HHHHhhC
Confidence 8876543
No 97
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=98.83 E-value=1.2e-08 Score=63.52 Aligned_cols=52 Identities=23% Similarity=0.216 Sum_probs=44.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHHHHHHHHHhhcCCC
Q 030456 123 DERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLICIWHRSFMQRSTGSTL 176 (177)
Q Consensus 123 ~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~~~l~~~~~~~~ 176 (177)
++..+.....+.+.|+.+|+.|++ ++|++|+++|+||+++++.+.++...+.
T Consensus 23 ~~~~~~~~~~~~~~l~~le~~l~~--~~~l~G~~~t~ADi~~~~~~~~~~~~~~ 74 (95)
T PF00043_consen 23 EEMVEEARAKVPRYLEVLEKRLKG--GPYLVGDKLTIADIALFPMLDWLERLGP 74 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT--SSSSSBSS-CHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC--CCeeeccCCchhHHHHHHHHHHHHHhCC
Confidence 346778888999999999999997 9999999999999999999999876553
No 98
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.9e-08 Score=60.73 Aligned_cols=70 Identities=19% Similarity=0.169 Sum_probs=53.9
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhc-CCCCccceEEeCCeeeeeHHHHHH
Q 030456 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKI-NPIGYVPALVDGDFVVSDSFAILM 71 (177)
Q Consensus 1 m~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~-~p~~~~P~L~~~~~~l~es~~I~~ 71 (177)
++++|..+.||||.+++-+|..+|++|+.+.++..... ...++.+. ++..++|++..|+..+.....+.+
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~-~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~ 72 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPE-EAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDA 72 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHH-HHHHHHHHhCCCCCcCEEEECCEEEeCcccHHH
Confidence 46899999999999999999999999999988865432 23344444 478999999999987765443333
No 99
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.80 E-value=2e-08 Score=59.86 Aligned_cols=71 Identities=15% Similarity=0.213 Sum_probs=56.3
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCC-ccceEEeCCeeeeeHHHHHHHHH
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIG-YVPALVDGDFVVSDSFAILMYLE 74 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~-~~P~L~~~~~~l~es~~I~~~l~ 74 (177)
++||+.+.||+|.+++-+|..+|++|+.+.++.. .....++.+..... .+|++..+|..+.+...+.++-.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~--~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGD--PALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCC--HHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHh
Confidence 5799999999999999999999999998888643 12234444444444 89999999999999888877643
No 100
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=98.79 E-value=5.5e-08 Score=61.40 Aligned_cols=89 Identities=18% Similarity=0.063 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHHHHhccccchhHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHHHH
Q 030456 86 DLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLICIWHR 165 (177)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~ 165 (177)
|..+|++.+++..|+.+.+.++-....+...-.........+.....+.+.+...+++|.. |++||+|+ .||||..++
T Consensus 1 D~~~RArAR~vqAwlrSdf~~lR~Erpt~vvf~~~~~~pLs~~a~~~a~kL~~~a~~ll~~-g~~~LFGe-wsIAD~dlA 78 (117)
T PF14834_consen 1 DRQERARARQVQAWLRSDFMALRQERPTNVVFRGARKPPLSEAAQAAAQKLIAVAERLLAD-GGPNLFGE-WSIADADLA 78 (117)
T ss_dssp SHHHHHHHHHHHHHHHHS-HHHHHHS-THHHHS--------HHHHHHHHHHHHHHHHHTTT---SSTTSS---HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcccHHHHhhCChhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhcc-CCCCcccc-chHHHHHHH
Confidence 4578999999999999988776554443332111112334566667777888888988876 78999995 999999999
Q ss_pred HHHHHhhcCCC
Q 030456 166 SFMQRSTGSTL 176 (177)
Q Consensus 166 ~~l~~~~~~~~ 176 (177)
+++.++...|.
T Consensus 79 ~ml~Rl~~~gd 89 (117)
T PF14834_consen 79 LMLNRLVTYGD 89 (117)
T ss_dssp HHHHHHHTTT-
T ss_pred HHHHHHHHcCC
Confidence 99999998775
No 101
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.75 E-value=3e-08 Score=59.74 Aligned_cols=72 Identities=15% Similarity=0.177 Sum_probs=58.9
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHHh
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEE 75 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~~ 75 (177)
+++|+.+.||+|.+++-+|+.+|++|+.+.++... ....++.+......+|++..+|..+.+...+..+-++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~--~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDP--ALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCH--HHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHc
Confidence 57999999999999999999999999999887432 2345566666788999999999999888887776554
No 102
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=98.75 E-value=3.8e-08 Score=63.01 Aligned_cols=55 Identities=16% Similarity=-0.011 Sum_probs=46.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhccC--------CCccccCCchHHHHHHHHHHHHhhcCCC
Q 030456 122 ADERDIWAKTHIGKGFAALEKLLKDYA--------GKYATGDEVFLICIWHRSFMQRSTGSTL 176 (177)
Q Consensus 122 ~~~~~~~~~~~~~~~l~~le~~L~~~~--------~~~l~G~~~t~aDi~l~~~l~~~~~~~~ 176 (177)
+.+..+.....+.+.|+.+|++|.++. ++|++|+++|+|||++++.+.++...++
T Consensus 23 ~~~~i~~~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~~~~~~ 85 (111)
T cd03204 23 NVEYLKKILDELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRLKFLGL 85 (111)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHHHHcCc
Confidence 456678888999999999999998621 2599999999999999999998876543
No 103
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=98.74 E-value=5.6e-08 Score=63.91 Aligned_cols=49 Identities=12% Similarity=0.064 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc-CCCccccCCchHHHHHHHHHHHHhhc
Q 030456 125 RDIWAKTHIGKGFAALEKLLKDY-AGKYATGDEVFLICIWHRSFMQRSTG 173 (177)
Q Consensus 125 ~~~~~~~~~~~~l~~le~~L~~~-~~~~l~G~~~t~aDi~l~~~l~~~~~ 173 (177)
..+...+.+.+.|..+|++|+++ +++|++|+++|+||+++++.+.++..
T Consensus 32 ~~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ADi~l~~~~~~~~~ 81 (126)
T cd03210 32 GKDDYIKDLPEQLKPFEKLLSKNNGKGFIVGDKISFADYNLFDLLDIHLV 81 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCeeeCCCccHHHHHHHHHHHHHHH
Confidence 34566677899999999999864 46899999999999999999888753
No 104
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=98.73 E-value=5e-08 Score=65.12 Aligned_cols=47 Identities=15% Similarity=0.162 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHHHHHHHHHhhc
Q 030456 127 IWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLICIWHRSFMQRSTG 173 (177)
Q Consensus 127 ~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~~~l~~~~~ 173 (177)
+...+.+.+.|+.+|++|++++++|++|+++|+||++++..+.++..
T Consensus 38 ~~~~~~~~~~l~~lE~~L~~~~~~~l~G~~~T~ADi~l~~~l~~~~~ 84 (137)
T cd03208 38 LIKEKAKNRYFPVFEKVLKSHGQDFLVGNKLSRADIHLLEAILMVEE 84 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCeeeCCCCCHHHHHHHHHHHHHHH
Confidence 34445678999999999984347899999999999999999988754
No 105
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=98.73 E-value=6.5e-08 Score=63.12 Aligned_cols=77 Identities=6% Similarity=0.010 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHHHHHHH
Q 030456 89 RKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLICIWHRSFM 168 (177)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~~~l 168 (177)
++++++++++.+.+.......... . ...+...+...+.+.+.++.+|++|++ ++|++|+++|+||++++..+
T Consensus 2 e~~~id~~~~~~~d~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~T~aDi~l~~~~ 73 (121)
T cd03209 2 ERIRVDMLEQQAMDLRMGLARICY----S--PDFEKLKPDYLAKLPDKLKLFSDFLGD--RPWFAGDKITYVDFLLYEAL 73 (121)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhc----C--cchHHHHHHHHHHHHHHHHHHHHHhCC--CCCcCCCCccHHHHHHHHHH
Confidence 356677777666654332221111 1 112345566778899999999999987 78999999999999999999
Q ss_pred HHhhc
Q 030456 169 QRSTG 173 (177)
Q Consensus 169 ~~~~~ 173 (177)
.++..
T Consensus 74 ~~~~~ 78 (121)
T cd03209 74 DQHRI 78 (121)
T ss_pred HHHHH
Confidence 88764
No 106
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.70 E-value=5.1e-08 Score=58.21 Aligned_cols=70 Identities=13% Similarity=0.196 Sum_probs=52.1
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcC-CCCccceEE-eCCeeeeeH--HHHHHHH
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKIN-PIGYVPALV-DGDFVVSDS--FAILMYL 73 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~-p~~~~P~L~-~~~~~l~es--~~I~~~l 73 (177)
++||+.++||+|++++.+|++.|++|+.+.++ ........+.+.| +...+|+++ ++|..+.+. ..|..+|
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~--~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~~~~~~~~l 75 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIE--EDEGAADRVVSVNNGNMTVPTVKFADGSFLTNPSAAQVKAKL 75 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCceEEEeCc--CCHhHHHHHHHHhCCCceeCEEEECCCeEecCCCHHHHHHHh
Confidence 68999999999999999999999999876554 3223345566666 889999997 567776544 3444444
No 107
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.68 E-value=2.1e-08 Score=63.48 Aligned_cols=49 Identities=18% Similarity=0.106 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHHHHHHHHHhhcCC
Q 030456 125 RDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLICIWHRSFMQRSTGST 175 (177)
Q Consensus 125 ~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~~~l~~~~~~~ 175 (177)
..+.....+.+.++.+|++|++ ++|++|+++|+|||++++.+.++...+
T Consensus 27 ~~~~~~~~~~~~l~~le~~l~~--~~~l~g~~~t~aDi~~~~~~~~~~~~~ 75 (103)
T cd03207 27 ARMAGFGSYDDVLAALEQALAK--GPYLLGERFTAADVLVGSPLGWGLQFG 75 (103)
T ss_pred hhhhhhhhHHHHHHHHHHHHcc--CCcccCCccCHHHHHHHHHHHHHHHcC
Confidence 4556667899999999999997 799999999999999999998876543
No 108
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=98.68 E-value=9e-08 Score=58.83 Aligned_cols=44 Identities=20% Similarity=0.070 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHHHHHHHHHhhc
Q 030456 128 WAKTHIGKGFAALEKLLKDYAGKYATGDEVFLICIWHRSFMQRSTG 173 (177)
Q Consensus 128 ~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~~~l~~~~~ 173 (177)
...+++.+.++.+|++|++ ++|++|+++|+|||++++.+.++..
T Consensus 19 ~~~~~~~~~l~~le~~L~~--~~yl~Gd~~t~aDi~l~~~l~~~~~ 62 (88)
T cd03193 19 EIYSLAKKDLKALSDLLGD--KKFFFGDKPTSLDATVFGHLASILY 62 (88)
T ss_pred HHHHHHHHHHHHHHHHhCC--CCccCCCCCCHHHHHHHHHHHHHHh
Confidence 6677889999999999998 8999999999999999999988764
No 109
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.67 E-value=2.4e-08 Score=56.91 Aligned_cols=60 Identities=13% Similarity=0.201 Sum_probs=50.0
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeee
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVV 63 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l 63 (177)
+++|+.+.||+|.+++-+|..+|++|+.+.++... ....++.+.....++|++..||..+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~--~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDE--EAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSH--HHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccch--hHHHHHHHHcCCCccCEEEECCEEC
Confidence 57999999999999999999999999999888542 2455666666788999999988764
No 110
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.67 E-value=4.1e-08 Score=63.43 Aligned_cols=51 Identities=16% Similarity=0.157 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc-CCCccccCCchHHHHHHHHHHHHhhcCCC
Q 030456 125 RDIWAKTHIGKGFAALEKLLKDY-AGKYATGDEVFLICIWHRSFMQRSTGSTL 176 (177)
Q Consensus 125 ~~~~~~~~~~~~l~~le~~L~~~-~~~~l~G~~~t~aDi~l~~~l~~~~~~~~ 176 (177)
..+...+.+.+.++.+|.+++.. +++|++|+ +|+||+++++.+.++...|+
T Consensus 38 ~~~~~~~~~~~~~~~le~~l~~~~~~~yl~Gd-~T~ADi~l~~~~~~~~~~~~ 89 (114)
T cd03194 38 LSEAVQADIARIEAIWAECLARFQGGPFLFGD-FSIADAFFAPVVTRFRTYGL 89 (114)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CcHHHHHHHHHHHHHHHcCC
Confidence 34566666777777787777532 47899999 99999999999998876654
No 111
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.67 E-value=4.8e-08 Score=57.79 Aligned_cols=57 Identities=14% Similarity=0.155 Sum_probs=44.4
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCe
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDF 61 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~ 61 (177)
+++|+.+.||+|++++-+|+++|++|+.+.++-.. ....++ +..+...+|+++.+|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~--~~~~~~-~~~g~~~vP~v~~~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQP--EAIDYV-KAQGFRQVPVIVADGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCH--HHHHHH-HHcCCcccCEEEECCC
Confidence 58999999999999999999999999998876331 122333 3456679999998654
No 112
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.66 E-value=1.6e-07 Score=57.58 Aligned_cols=75 Identities=15% Similarity=0.155 Sum_probs=57.1
Q ss_pred eeecccCCCchhHHHHHHHHHcC-----CcceEEEeecCCCCCCChhhhhcCCC--CccceEEeCCeeeeeHHHHHHHHH
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKG-----LEYEYKAVNLVKGEQFSPDFLKINPI--GYVPALVDGDFVVSDSFAILMYLE 74 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~g-----i~~~~~~v~~~~~~~~~~~~~~~~p~--~~~P~L~~~~~~l~es~~I~~~l~ 74 (177)
+++|+.++||+|.+++-+|...+ ++|+.+.++-. + ....++...... ..+|++..||..+.++..|..++.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~-~-~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~ 79 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAE-G-ISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVK 79 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCC-H-HHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHH
Confidence 68999999999999999999985 45666555421 1 112344444433 689999999999999999999998
Q ss_pred hhCC
Q 030456 75 EKYP 78 (177)
Q Consensus 75 ~~~~ 78 (177)
++++
T Consensus 80 ~~~~ 83 (86)
T TIGR02183 80 ENFD 83 (86)
T ss_pred hccc
Confidence 8764
No 113
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.65 E-value=1.3e-07 Score=57.83 Aligned_cols=75 Identities=13% Similarity=0.137 Sum_probs=59.7
Q ss_pred eeecccCCCchhHHHHHHHHH-----cCCcceEEEeecCCCCCCChhhhhcCCC--CccceEEeCCeeeeeHHHHHHHHH
Q 030456 2 LKLFSYWRSSCSHRVRIGLNL-----KGLEYEYKAVNLVKGEQFSPDFLKINPI--GYVPALVDGDFVVSDSFAILMYLE 74 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~-----~gi~~~~~~v~~~~~~~~~~~~~~~~p~--~~~P~L~~~~~~l~es~~I~~~l~ 74 (177)
+++|+.++||+|.+++-+|+. .|++|+.+.++-.. ...+++...... ..+|++..||..+.+...|..++.
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~--~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~~~ 80 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEG--ISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAYVK 80 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCCh--HHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHHHH
Confidence 579999999999999999999 89999988776321 112344443332 689999999999999999999998
Q ss_pred hhCC
Q 030456 75 EKYP 78 (177)
Q Consensus 75 ~~~~ 78 (177)
..++
T Consensus 81 ~~~~ 84 (85)
T PRK11200 81 ENLG 84 (85)
T ss_pred Hhcc
Confidence 8764
No 114
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=98.64 E-value=9.9e-08 Score=63.07 Aligned_cols=51 Identities=16% Similarity=0.098 Sum_probs=43.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhc--------------cCCCccccCCchHHHHHHHHHHHHhh
Q 030456 122 ADERDIWAKTHIGKGFAALEKLLKD--------------YAGKYATGDEVFLICIWHRSFMQRST 172 (177)
Q Consensus 122 ~~~~~~~~~~~~~~~l~~le~~L~~--------------~~~~~l~G~~~t~aDi~l~~~l~~~~ 172 (177)
+++..+...+.+.+.|+.+|++|++ .+++|++|+++|+|||++++.+.++.
T Consensus 23 ~~~~~e~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~~~~ 87 (134)
T cd03198 23 NPALNENLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLHIVK 87 (134)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 3466788888999999999999986 34689999999999999999998764
No 115
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.59 E-value=2.4e-07 Score=56.08 Aligned_cols=74 Identities=11% Similarity=0.110 Sum_probs=60.2
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCC-CCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHHh
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGE-QFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEE 75 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~-~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~~ 75 (177)
+++|+.+.||+|.+++-+|...+++|+...++..... .....+.+.+...++|++..+|..+.+...|..+..+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 5789999999999999999999999999988865421 1123455666677999999999999999999887765
No 116
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.57 E-value=2.2e-07 Score=58.43 Aligned_cols=72 Identities=15% Similarity=0.139 Sum_probs=56.1
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCC-CCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHH
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGE-QFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYL 73 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~-~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l 73 (177)
+++|+.++||+|.+++-+|...|++|+.+.++..+.. .....+.+.+...++|.+..+|..+.+...+....
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l~ 82 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMALH 82 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHHH
Confidence 5799999999999999999999999998888743211 01223455567789999999999998887776643
No 117
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.56 E-value=1.9e-07 Score=61.27 Aligned_cols=47 Identities=13% Similarity=-0.053 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHHHHHHHHHhhcC
Q 030456 126 DIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLICIWHRSFMQRSTGS 174 (177)
Q Consensus 126 ~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~~~l~~~~~~ 174 (177)
.+...+.+.+.|+.+|++|++ ++|+.||++|+||+++++.+.++...
T Consensus 56 ~~~~~~~~~~~l~~l~~~L~~--~~fl~Gd~~t~AD~~l~~~l~~~~~~ 102 (124)
T cd03202 56 REAALANFRAALEPLRATLKG--QPFLGGAAPNYADYIVFGGFQWARIV 102 (124)
T ss_pred hHHHHHHHHHHHHHHHHHHcC--CCccCCCCCchhHHHHHHHHHHHHHc
Confidence 457778899999999999988 89999999999999999999888764
No 118
>PHA03050 glutaredoxin; Provisional
Probab=98.49 E-value=5.2e-07 Score=57.56 Aligned_cols=70 Identities=17% Similarity=0.181 Sum_probs=55.5
Q ss_pred eeecccCCCchhHHHHHHHHHcCC---cceEEEeecCC-CCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHH
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGL---EYEYKAVNLVK-GEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILM 71 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi---~~~~~~v~~~~-~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~ 71 (177)
+++|..++||||.+++-+|...|+ +|+.+.++-.. +.....++.+.+...+||.+..+|..+.....+..
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeChHHHHH
Confidence 578999999999999999999999 78877776321 11224567777778899999999999887776655
No 119
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.48 E-value=8.1e-07 Score=58.41 Aligned_cols=49 Identities=12% Similarity=-0.013 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHHHHHHHHHhhcC
Q 030456 124 ERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLICIWHRSFMQRSTGS 174 (177)
Q Consensus 124 ~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~~~l~~~~~~ 174 (177)
...+...+...+.|+.++++|++ ++||+||+||.||+++++++..+...
T Consensus 53 ~~~ee~~~~~~~~l~aLs~~Lg~--~~~l~Gd~pT~~Da~vf~~la~~~~~ 101 (126)
T cd03211 53 KTLDQVIEEVDQCCQALSQRLGT--QPYFFGDQPTELDALVFGHLFTILTT 101 (126)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCCcHHHHHHHHHHHHHHhc
Confidence 34577788889999999999998 89999999999999999999887643
No 120
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=98.46 E-value=1.3e-06 Score=56.87 Aligned_cols=73 Identities=14% Similarity=0.195 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHHHhccccchhHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHhc-cCCCccccCCchHHHHHH
Q 030456 86 DLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKD-YAGKYATGDEVFLICIWH 164 (177)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~~~l~G~~~t~aDi~l 164 (177)
|+.+|+.+++++.+... .....+.+...+. + .+.+.+.++.+|+.|++ .+++|++| ++|+|||++
T Consensus 1 d~~~ra~~~~~~~~~~~----~~~~~~~~~~~~~---~------~~~~~~~l~~Le~~L~~~~~~~fl~G-~~tlADi~l 66 (120)
T cd03203 1 DPAKREFADELLAYTDA----FTKALYSSLIKGD---P------SAEAAAALDYIENALSKFDDGPFFLG-QFSLVDIAY 66 (120)
T ss_pred CHHHHHHHHHHHHHHHH----HHHHHHHHHhcCC---c------hHHHHHHHHHHHHHHHhcCCCCCcCC-CccHHHHHH
Confidence 46788999999988221 1111112221111 1 12345677888888863 13799999 999999999
Q ss_pred HHHHHHhh
Q 030456 165 RSFMQRST 172 (177)
Q Consensus 165 ~~~l~~~~ 172 (177)
++.+.++.
T Consensus 67 ~~~~~~~~ 74 (120)
T cd03203 67 VPFIERFQ 74 (120)
T ss_pred HHHHHHHH
Confidence 99987653
No 121
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.45 E-value=1e-06 Score=55.21 Aligned_cols=50 Identities=16% Similarity=-0.016 Sum_probs=42.7
Q ss_pred hcCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHHHHHHHHHhhc
Q 030456 119 KAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLICIWHRSFMQRSTG 173 (177)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~~~l~~~~~ 173 (177)
....+...+...+.+.+.|+.+|++|++ ++| +++|+|||++++.+.++..
T Consensus 28 ~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~---d~~TlADi~l~~~l~~~~~ 77 (98)
T cd03205 28 EKRSQPWLERQRGKIERALDALEAELAK--LPL---DPLDLADIAVACALGYLDF 77 (98)
T ss_pred hhhChHHHHHHHHHHHHHHHHHHHhhhh--CCC---CCCCHHHHHHHHHHHHHHh
Confidence 3345577888999999999999999987 788 8999999999999988753
No 122
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=98.42 E-value=1.5e-06 Score=56.68 Aligned_cols=45 Identities=16% Similarity=0.190 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHHHHHHHHHhh
Q 030456 127 IWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLICIWHRSFMQRST 172 (177)
Q Consensus 127 ~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~~~l~~~~ 172 (177)
+...+.+.+.|..+|++|++ +++|++||++|+|||++++.+.++.
T Consensus 29 ~~~~~~l~~~l~~Le~~L~~-~~~fl~Gd~~TlADi~l~~~l~~l~ 73 (121)
T cd03201 29 DGTEQALLDELEALEDHLKE-NGPFINGEKISAVDLSLAPKLYHLE 73 (121)
T ss_pred HHHHHHHHHHHHHHHHHHhc-CCCccCCCCCCHHhHHHHHHHHHHH
Confidence 44556788999999999985 2689999999999999999776654
No 123
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=98.35 E-value=2.9e-06 Score=49.96 Aligned_cols=56 Identities=30% Similarity=0.359 Sum_probs=48.0
Q ss_pred CCCchhHHHHHHHHHcCCc---ceEEEeecCCCCCCChhhhhcCCCCccceEEe-CCeeeeeHHHHHHHH
Q 030456 8 WRSSCSHRVRIGLNLKGLE---YEYKAVNLVKGEQFSPDFLKINPIGYVPALVD-GDFVVSDSFAILMYL 73 (177)
Q Consensus 8 ~~s~~~~~v~~~L~~~gi~---~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~-~~~~l~es~~I~~~l 73 (177)
..+|.|.++.++|..++.| |+++..+- + .++|.|++|+|.+ +++.+++-..|++||
T Consensus 12 sid~ecLa~~~yl~~~~~~~~~~~vv~s~n-------~---~~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 12 SIDPECLAVIAYLKFAGAPEQQFKVVPSNN-------P---WLSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred ccCHHHHHHHHHHHhCCCCCceEEEEEcCC-------C---CcCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 3589999999999999999 66665541 1 2689999999999 999999999999998
No 124
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.34 E-value=2.1e-06 Score=52.07 Aligned_cols=74 Identities=12% Similarity=0.137 Sum_probs=57.7
Q ss_pred eeecccCCCchhHHHHHHHHHcCCc--ceEEEeecCCCCC-CChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHHh
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLE--YEYKAVNLVKGEQ-FSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEE 75 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~--~~~~~v~~~~~~~-~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~~ 75 (177)
+++|+.++||+|.+++-+|...+++ |+...++..+... ....+.+......+|++..+|..+.++..+..+..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 4689999999999999999999999 8888887543111 112344556667899999999999999888877654
No 125
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=98.32 E-value=2.4e-06 Score=57.00 Aligned_cols=49 Identities=10% Similarity=0.055 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHHHHHHHHHhhcC
Q 030456 124 ERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLICIWHRSFMQRSTGS 174 (177)
Q Consensus 124 ~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~~~l~~~~~~ 174 (177)
...+...+...+.++.+++.|++ ++|++|++||.+|+.+++.+..+...
T Consensus 60 ~~~~~~~~~a~~~l~~l~~~L~~--~~~~~Gd~~t~~D~~~~~~l~~~~~~ 108 (137)
T cd03212 60 EVEAEIYRDAKECLNLLSQRLGE--SQFFFGDTPTSLDALVFGYLAPLLKA 108 (137)
T ss_pred hhHHHHHHHHHHHHHHHHHHHCC--CCcCCCCCCcHHHHHHHHHHHHHHhc
Confidence 34567778888999999999998 89999999999999999998877643
No 126
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.30 E-value=2.8e-06 Score=53.22 Aligned_cols=64 Identities=16% Similarity=0.108 Sum_probs=50.3
Q ss_pred CCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHH
Q 030456 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYL 73 (177)
Q Consensus 8 ~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l 73 (177)
+.||||.+++-+|..+|++|+.+.+. .......++.+.+...++|.+..+|..+.+...+....
T Consensus 25 ~~Cp~C~~ak~lL~~~~i~~~~~di~--~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~~l~ 88 (97)
T TIGR00365 25 PQCGFSARAVQILKACGVPFAYVNVL--EDPEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIMEMY 88 (97)
T ss_pred CCCchHHHHHHHHHHcCCCEEEEECC--CCHHHHHHHHHHhCCCCCCEEEECCEEEeChHHHHHHH
Confidence 78999999999999999999987764 22223445556677789999999999888877776644
No 127
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=98.23 E-value=4.5e-06 Score=55.90 Aligned_cols=47 Identities=9% Similarity=0.047 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHHHHHHHHHhhcC
Q 030456 127 IWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLICIWHRSFMQRSTGS 174 (177)
Q Consensus 127 ~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~~~l~~~~~~ 174 (177)
+..++.+...++.+-+.+.. +++|+.|++||+|||++++.+..+..+
T Consensus 78 ~D~r~~L~~a~~~w~~~~~~-~~~FlaGd~ptIADisvyg~l~s~e~~ 124 (149)
T cd03197 78 DDVREWLYDALNTWVAALGK-DRQFHGGSKPNLADLAVYGVLRSVEGH 124 (149)
T ss_pred chHHHHHHHHHHHHHHHhcC-CCCccCCCCCCHHHHHHHHHHHHHHHh
Confidence 44566777777766666655 378999999999999999999888765
No 128
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.21 E-value=6e-06 Score=50.96 Aligned_cols=64 Identities=16% Similarity=0.054 Sum_probs=51.8
Q ss_pred CCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHH
Q 030456 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYL 73 (177)
Q Consensus 8 ~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l 73 (177)
+.||+|.+++-+|...|++|+.+.+.-. .....++.+.+...++|.+..+|..+.+...+....
T Consensus 21 ~~Cp~C~~ak~~L~~~~i~y~~idv~~~--~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~~l~ 84 (90)
T cd03028 21 PRCGFSRKVVQILNQLGVDFGTFDILED--EEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKEMH 84 (90)
T ss_pred CCCcHHHHHHHHHHHcCCCeEEEEcCCC--HHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHHHHH
Confidence 5899999999999999999999987632 223455566677789999999999998888877744
No 129
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.99 E-value=2.4e-05 Score=52.57 Aligned_cols=70 Identities=11% Similarity=0.116 Sum_probs=54.8
Q ss_pred eeecccC------CCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCC----CCccceEEeCCeeeeeHHHHHH
Q 030456 2 LKLFSYW------RSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINP----IGYVPALVDGDFVVSDSFAILM 71 (177)
Q Consensus 2 ~~Ly~~~------~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p----~~~~P~L~~~~~~l~es~~I~~ 71 (177)
++||..+ ++|+|.+++.+|+.++|+|+.+.|++.. ....++.+... ..++|.+..+|..+...-.+.+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~--~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~ 79 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDS--GFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLR 79 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCH--HHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHH
Confidence 5789888 8999999999999999999988887542 23445555433 3789999999999988877776
Q ss_pred HH
Q 030456 72 YL 73 (177)
Q Consensus 72 ~l 73 (177)
.-
T Consensus 80 L~ 81 (147)
T cd03031 80 LN 81 (147)
T ss_pred HH
Confidence 43
No 130
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.79 E-value=6.1e-05 Score=59.24 Aligned_cols=67 Identities=9% Similarity=0.154 Sum_probs=51.3
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhh---------hcCCCCccceEEeCCeeeeeHHHHHH
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFL---------KINPIGYVPALVDGDFVVSDSFAILM 71 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~---------~~~p~~~~P~L~~~~~~l~es~~I~~ 71 (177)
+++|+.++||+|.+++-+|..+||+|+.+.++-. . ...++. ......++|++..||..+.+-..+..
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~--~-~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~ 79 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDD--V-KRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA 79 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCC--h-hHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH
Confidence 6899999999999999999999999998888722 1 112221 22456789999999988877766654
No 131
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.72 E-value=4.3e-05 Score=50.55 Aligned_cols=33 Identities=12% Similarity=0.249 Sum_probs=31.5
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCcceEEEee
Q 030456 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (177)
Q Consensus 1 m~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~ 33 (177)
|+++|+.+.|++|++++-+|..+||+|+.+.+.
T Consensus 1 mi~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~ 33 (131)
T PRK01655 1 MVTLFTSPSCTSCRKAKAWLEEHDIPFTERNIF 33 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCcEEeecc
Confidence 899999999999999999999999999998875
No 132
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=97.66 E-value=5.9e-05 Score=48.73 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=31.2
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCcceEEEee
Q 030456 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (177)
Q Consensus 1 m~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~ 33 (177)
|+++|+.+.|+.|++++-+|+.+|++|+.+.+.
T Consensus 1 mi~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~ 33 (115)
T cd03032 1 MIKLYTSPSCSSCRKAKQWLEEHQIPFEERNLF 33 (115)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 899999999999999999999999999988774
No 133
>PRK10824 glutaredoxin-4; Provisional
Probab=97.60 E-value=0.00027 Score=45.49 Aligned_cols=64 Identities=13% Similarity=0.069 Sum_probs=50.9
Q ss_pred CCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHH
Q 030456 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYL 73 (177)
Q Consensus 8 ~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l 73 (177)
+.||||.++.-+|...|++|....+.-. ......+...+...++|-+..+|..+.....+....
T Consensus 28 p~Cpyc~~ak~lL~~~~i~~~~idi~~d--~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl~~l~ 91 (115)
T PRK10824 28 PSCGFSAQAVQALSACGERFAYVDILQN--PDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMY 91 (115)
T ss_pred CCCchHHHHHHHHHHcCCCceEEEecCC--HHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHH
Confidence 4899999999999999999998776532 123455667777889999999999998887766643
No 134
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.57 E-value=0.00031 Score=40.55 Aligned_cols=58 Identities=17% Similarity=0.091 Sum_probs=40.3
Q ss_pred CeeecccCCCchhHHHHHHHHHc-----CCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeee
Q 030456 1 MLKLFSYWRSSCSHRVRIGLNLK-----GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVS 64 (177)
Q Consensus 1 m~~Ly~~~~s~~~~~v~~~L~~~-----gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~ 64 (177)
++++|+.++||+|.+++-+|++. +++|... +... .++..+...-..+|++..+|..+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~i--d~~~----~~~l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMI--DAAE----FPDLADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEE--Eccc----CHhHHHHcCCcccCEEEECCEEEE
Confidence 36789999999999999998865 4555444 4322 234444445567999998887654
No 135
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=97.53 E-value=0.00012 Score=48.49 Aligned_cols=33 Identities=18% Similarity=0.394 Sum_probs=31.6
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCcceEEEee
Q 030456 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (177)
Q Consensus 1 m~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~ 33 (177)
|+++|+.+.|+.|++++-.|..+|++|+.+.+.
T Consensus 1 Mi~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~ 33 (132)
T PRK13344 1 MIKIYTISSCTSCKKAKTWLNAHQLSYKEQNLG 33 (132)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 899999999999999999999999999999876
No 136
>PRK12559 transcriptional regulator Spx; Provisional
Probab=97.52 E-value=0.00013 Score=48.21 Aligned_cols=34 Identities=15% Similarity=0.257 Sum_probs=31.9
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCcceEEEeec
Q 030456 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNL 34 (177)
Q Consensus 1 m~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~ 34 (177)
|+++|+.+.|+.|++++-+|+.+|++|+.+.+.-
T Consensus 1 mi~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~ 34 (131)
T PRK12559 1 MVVLYTTASCASCRKAKAWLEENQIDYTEKNIVS 34 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeC
Confidence 8999999999999999999999999999988763
No 137
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.00073 Score=42.67 Aligned_cols=73 Identities=14% Similarity=0.156 Sum_probs=56.0
Q ss_pred eecccCCCchhHHHHHHHHHcCCcceEEEeecCCCC-CCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHHh
Q 030456 3 KLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGE-QFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEE 75 (177)
Q Consensus 3 ~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~-~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~~ 75 (177)
..|.-+.||+|.+++-+|...++++..++++-.... .-...+.+.....++|.+..+|..+.....+..+-.+
T Consensus 17 VifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl~~lh~~ 90 (104)
T KOG1752|consen 17 VIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASDLMALHKS 90 (104)
T ss_pred EEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHHHHHHHc
Confidence 467789999999999999999999999998865422 1223333455566999999999999888887765443
No 138
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=97.28 E-value=0.00028 Score=45.27 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=30.4
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeec
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNL 34 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~ 34 (177)
+++|+.+.||+|++++-+|+.+|++|+.+.+.-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVE 33 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccC
Confidence 589999999999999999999999999987763
No 139
>PTZ00062 glutaredoxin; Provisional
Probab=97.26 E-value=0.00099 Score=47.37 Aligned_cols=64 Identities=16% Similarity=0.043 Sum_probs=50.0
Q ss_pred CCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHH
Q 030456 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYL 73 (177)
Q Consensus 8 ~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l 73 (177)
+.||+|.++.-+|...||+|+...+.- .+.....+.+.+...++|.+..+|..+.+...+.+..
T Consensus 126 p~C~~C~~~k~~L~~~~i~y~~~DI~~--d~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l~~l~ 189 (204)
T PTZ00062 126 PFCRFSNAVVNMLNSSGVKYETYNIFE--DPDLREELKVYSNWPTYPQLYVNGELIGGHDIIKELY 189 (204)
T ss_pred CCChhHHHHHHHHHHcCCCEEEEEcCC--CHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHH
Confidence 579999999999999999999776652 2223455566677789999999999988877776633
No 140
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=97.20 E-value=0.00044 Score=43.83 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=29.9
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEee
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~ 33 (177)
+++|+.+.||+|++++-+|+.+|++|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYL 32 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeec
Confidence 57999999999999999999999999988875
No 141
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=97.18 E-value=0.002 Score=39.81 Aligned_cols=68 Identities=19% Similarity=0.165 Sum_probs=51.3
Q ss_pred eeecccCCCc------hhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCC----CCccceEEeCCeeeeeHHHHHH
Q 030456 2 LKLFSYWRSS------CSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINP----IGYVPALVDGDFVVSDSFAILM 71 (177)
Q Consensus 2 ~~Ly~~~~s~------~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p----~~~~P~L~~~~~~l~es~~I~~ 71 (177)
+++|..+.+. .|++++.+|..+||+|+.+.|+... ....++.+..+ ...+|-+..++..+.+.-.+..
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~--~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~ 79 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNE--ENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFE 79 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCH--HHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHH
Confidence 5778666654 6788999999999999999988643 24456655543 4789999999998888765554
No 142
>PRK10853 putative reductase; Provisional
Probab=97.18 E-value=0.00054 Score=44.43 Aligned_cols=33 Identities=18% Similarity=0.424 Sum_probs=31.0
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCcceEEEee
Q 030456 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (177)
Q Consensus 1 m~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~ 33 (177)
|+++|+.+.|.-|++++-.|+++|++|+.+.+-
T Consensus 1 Mi~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~ 33 (118)
T PRK10853 1 MVTLYGIKNCDTIKKARRWLEAQGIDYRFHDYR 33 (118)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHcCCCcEEeehc
Confidence 899999999999999999999999999988664
No 143
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=97.03 E-value=0.00091 Score=43.24 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=30.8
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCcceEEEee
Q 030456 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (177)
Q Consensus 1 m~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~ 33 (177)
|+++|+.+.|.-|++++-.|+.+||+|+.+.+.
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~ 34 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYL 34 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEee
Confidence 799999999999999999999999999988665
No 144
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.0032 Score=36.70 Aligned_cols=64 Identities=22% Similarity=0.173 Sum_probs=46.3
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCcceEEEeecCC--------CCCCChhhhh--cCCCCccceEE-eCCeeee
Q 030456 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVK--------GEQFSPDFLK--INPIGYVPALV-DGDFVVS 64 (177)
Q Consensus 1 m~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~--------~~~~~~~~~~--~~p~~~~P~L~-~~~~~l~ 64 (177)
|.+||+...||.|....-.|+..++.|+.+.+.-.- -....++|.. .|.+--+|.|. +||.++.
T Consensus 3 kp~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 3 KPKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred CceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 468999999999999999999999999999886431 0123455543 34445689888 5565553
No 145
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=96.85 E-value=0.0013 Score=42.52 Aligned_cols=32 Identities=19% Similarity=0.447 Sum_probs=29.5
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEee
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~ 33 (177)
+++|+.+.||+|++++-+|+.+|++|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIG 32 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecC
Confidence 57999999999999999999999999988765
No 146
>PHA02125 thioredoxin-like protein
Probab=96.76 E-value=0.0054 Score=36.25 Aligned_cols=52 Identities=25% Similarity=0.306 Sum_probs=39.0
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEe
Q 030456 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVD 58 (177)
Q Consensus 1 m~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~ 58 (177)
|+.+|+.++|+.|.++.-.|+ ++.++...++.. ...+..+...-..+|++..
T Consensus 1 ~iv~f~a~wC~~Ck~~~~~l~--~~~~~~~~vd~~----~~~~l~~~~~v~~~PT~~~ 52 (75)
T PHA02125 1 MIYLFGAEWCANCKMVKPMLA--NVEYTYVDVDTD----EGVELTAKHHIRSLPTLVN 52 (75)
T ss_pred CEEEEECCCCHhHHHHHHHHH--HHhheEEeeeCC----CCHHHHHHcCCceeCeEEC
Confidence 889999999999999988886 356666666643 2345556666678999984
No 147
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=96.72 E-value=0.002 Score=40.88 Aligned_cols=32 Identities=16% Similarity=0.384 Sum_probs=29.8
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEee
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~ 33 (177)
+++|+.+.|+.|++++-.|+++|++|+.+.+.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~ 32 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYR 32 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecc
Confidence 58999999999999999999999999988775
No 148
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=96.65 E-value=0.0025 Score=40.99 Aligned_cols=32 Identities=16% Similarity=0.151 Sum_probs=29.8
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEee
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~ 33 (177)
+++|+.+.|+.|++++-+|+++|++|+.+.+.
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~ 33 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHEVEVRDLL 33 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEeehh
Confidence 68999999999999999999999999988765
No 149
>PRK10026 arsenate reductase; Provisional
Probab=96.62 E-value=0.0026 Score=42.49 Aligned_cols=33 Identities=9% Similarity=-0.055 Sum_probs=30.6
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCcceEEEee
Q 030456 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (177)
Q Consensus 1 m~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~ 33 (177)
|+++|+.+.|.-|++++-.|+++|++|+.+.+-
T Consensus 3 ~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~ 35 (141)
T PRK10026 3 NITIYHNPACGTSRNTLEMIRNSGTEPTIIHYL 35 (141)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeee
Confidence 489999999999999999999999999988765
No 150
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.47 E-value=0.02 Score=33.89 Aligned_cols=54 Identities=9% Similarity=0.177 Sum_probs=38.5
Q ss_pred eeecccCCCchhHHH----HHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeee
Q 030456 2 LKLFSYWRSSCSHRV----RIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVV 63 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v----~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l 63 (177)
+.+|+ ++||.|..+ .-++++.|+.++...++- .++. ..-....+|++..+|..+
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~------~~~a-~~~~v~~vPti~i~G~~~ 60 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD------MNEI-LEAGVTATPGVAVDGELV 60 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC------HHHH-HHcCCCcCCEEEECCEEE
Confidence 45664 999999998 667888888888877761 1222 223456899999888655
No 151
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.36 E-value=0.0048 Score=49.42 Aligned_cols=85 Identities=11% Similarity=0.128 Sum_probs=62.3
Q ss_pred eCCeeeeeHHHHHHHHHhhCC-CCCCCCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHhhcCccHHHHHHHHHHHHH
Q 030456 58 DGDFVVSDSFAILMYLEEKYP-QPPLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKG 136 (177)
Q Consensus 58 ~~~~~l~es~~I~~~l~~~~~-~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (177)
.++..+.++..+..|..+... .+.+++.+ .++..++.|.++... .....+...
T Consensus 43 ~d~~~l~~a~~~~~~~~~~~~~~~~lf~~~-~d~~~vd~w~~~s~~-------------------------~~~~~~s~~ 96 (712)
T KOG1147|consen 43 LDGRKLNGATEPVVYSAALAKADPKLFGNN-IDRSQVDHWVSFSST-------------------------FSFDEISSS 96 (712)
T ss_pred cccccccCCccchhhhhhhcccCHhHcCCc-ccHHHHHHHHHHhhh-------------------------cchHHHHHH
Confidence 345666666666666554332 34588877 788999999998653 111335666
Q ss_pred HHHHHHHHhccCCCccccCCchHHHHHHHHHHHH
Q 030456 137 FAALEKLLKDYAGKYATGDEVFLICIWHRSFMQR 170 (177)
Q Consensus 137 l~~le~~L~~~~~~~l~G~~~t~aDi~l~~~l~~ 170 (177)
+..+++.|.- ..||+|.++|+||+++|+.++.
T Consensus 97 ~~~ld~~l~~--~t~lvg~sls~Ad~aiw~~l~~ 128 (712)
T KOG1147|consen 97 LSELDKFLVL--RTFLVGNSLSIADFAIWGALHS 128 (712)
T ss_pred HHHHHhhhhH--HHHhhccchhHHHHHHHHHHhc
Confidence 7778888887 8999999999999999999875
No 152
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=96.28 E-value=0.02 Score=33.99 Aligned_cols=57 Identities=19% Similarity=0.145 Sum_probs=39.8
Q ss_pred CeeecccCCCchhHHHHHHHHH----cCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCe
Q 030456 1 MLKLFSYWRSSCSHRVRIGLNL----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDF 61 (177)
Q Consensus 1 m~~Ly~~~~s~~~~~v~~~L~~----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~ 61 (177)
|+++|+.++|++|.++.-.|+. .+..+....++... ..+..+......+|++..+|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVME----NPQKAMEYGIMAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCcc----CHHHHHHcCCccCCEEEECCE
Confidence 5789999999999998888763 34446666676542 233344455567999998775
No 153
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.02 E-value=0.033 Score=33.44 Aligned_cols=54 Identities=15% Similarity=0.191 Sum_probs=40.4
Q ss_pred eeecccCCCchhHHHHHHHHHc--CCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCC
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLK--GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGD 60 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~--gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~ 60 (177)
++||+.+.|+.|..++-.|+.. ..+|+...++... .+++...- ...+|||..++
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~----d~~l~~~Y-~~~IPVl~~~~ 57 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDE----DPELFEKY-GYRIPVLHIDG 57 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTT----THHHHHHS-CTSTSEEEETT
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCC----CHHHHHHh-cCCCCEEEEcC
Confidence 5899999999999999999964 4568888888873 33333332 34899999777
No 154
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.037 Score=34.36 Aligned_cols=68 Identities=10% Similarity=0.103 Sum_probs=50.4
Q ss_pred cCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHHh
Q 030456 7 YWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEE 75 (177)
Q Consensus 7 ~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~~ 75 (177)
.+-|.|+.++--+|..+|+ .+...++....+.-+....+.+...++|-|-.+|..+..+-.|.+...+
T Consensus 27 ~P~CGFS~~~vqiL~~~g~-v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfvGG~DIv~Em~q~ 94 (105)
T COG0278 27 FPQCGFSAQAVQILSACGV-VDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFVGGCDIVREMYQS 94 (105)
T ss_pred CCCCCccHHHHHHHHHcCC-cceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEeccHHHHHHHHHc
Confidence 4679999999999999995 4444455443333445555667788999999999999998877776544
No 155
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=95.93 E-value=0.011 Score=38.75 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=29.7
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEee
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~ 33 (177)
+++|+.+.|.-|++++-.|+++|++|+.+.+-
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~ 34 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKASGHDVEVQDIL 34 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCCcEEEecc
Confidence 68999999999999999999999999988764
No 156
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=95.83 E-value=0.075 Score=35.11 Aligned_cols=43 Identities=19% Similarity=0.129 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHHHHHHHHHhh
Q 030456 127 IWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLICIWHRSFMQRST 172 (177)
Q Consensus 127 ~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~~~l~~~~ 172 (177)
....+++...|..+|.++.. .....| ++|+-||.+|+.|+.+.
T Consensus 58 ~~~i~~l~~~L~~Le~ll~~--~~~~n~-~LS~dDi~lFp~LR~Lt 100 (132)
T PF04399_consen 58 PELIAELNADLEELEPLLAS--PNAVNG-ELSIDDIILFPILRSLT 100 (132)
T ss_dssp HHHHHHHHHHHHHHHHH-SC--TTBTTS-S--HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhcc--ccccCC-CCCHHHHHHHHHHhhhh
Confidence 45667788888888888875 444444 89999999999999764
No 157
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=95.69 E-value=0.047 Score=33.44 Aligned_cols=57 Identities=19% Similarity=0.125 Sum_probs=38.3
Q ss_pred eeecccCCCchhHHHHHHHHHc-----CCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeee
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLK-----GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVS 64 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~-----gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~ 64 (177)
+.+|..++|++|..+.-+++.. ++.|..+.++ ..++......-..+|+++.||..+.
T Consensus 16 i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~------~~~e~a~~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 16 FETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGA------LFQDEVEERGIMSVPAIFLNGELFG 77 (89)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhH------hCHHHHHHcCCccCCEEEECCEEEE
Confidence 4678889999999988877654 3444444433 2344445555667999998876554
No 158
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=95.59 E-value=0.016 Score=37.14 Aligned_cols=32 Identities=22% Similarity=0.136 Sum_probs=29.2
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEee
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~ 33 (177)
+++|+.+.|.-|++++-.|+++|++|+.+.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYL 32 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999987654
No 159
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=95.51 E-value=0.018 Score=37.05 Aligned_cols=32 Identities=25% Similarity=0.142 Sum_probs=29.3
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEee
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~ 33 (177)
+++|+.+.|.-|++++-.|+.+|++|+.+.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYL 32 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999987654
No 160
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=95.01 E-value=0.11 Score=33.03 Aligned_cols=67 Identities=16% Similarity=0.147 Sum_probs=46.2
Q ss_pred CCchhHHHHHHHHHc---CCcceEEEeecCCCCCCChhhhhc-C-CCCccceEEe-CC-------------eeeeeHHHH
Q 030456 9 RSSCSHRVRIGLNLK---GLEYEYKAVNLVKGEQFSPDFLKI-N-PIGYVPALVD-GD-------------FVVSDSFAI 69 (177)
Q Consensus 9 ~s~~~~~v~~~L~~~---gi~~~~~~v~~~~~~~~~~~~~~~-~-p~~~~P~L~~-~~-------------~~l~es~~I 69 (177)
.||.|..+.=+|... .-..+++.|++.. .+.+.... . ....+|+|+- ++ ..|+|+..|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~R---PR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I 99 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPR---PRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRI 99 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCC---chHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHH
Confidence 488998888777742 2235677777664 33444433 2 2467999993 22 379999999
Q ss_pred HHHHHhhCC
Q 030456 70 LMYLEEKYP 78 (177)
Q Consensus 70 ~~~l~~~~~ 78 (177)
++||.++|+
T Consensus 100 ~~~La~r~g 108 (112)
T PF11287_consen 100 LRYLAERHG 108 (112)
T ss_pred HHHHHHHcC
Confidence 999999997
No 161
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=94.80 E-value=0.12 Score=35.75 Aligned_cols=41 Identities=17% Similarity=0.118 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhccCC---CccccCC-chHHHHHHHHHHHHhhcC
Q 030456 132 HIGKGFAALEKLLKDYAG---KYATGDE-VFLICIWHRSFMQRSTGS 174 (177)
Q Consensus 132 ~~~~~l~~le~~L~~~~~---~~l~G~~-~t~aDi~l~~~l~~~~~~ 174 (177)
...+++..++++|+. . .|+.|+. +|-+||.+++.|.-+..-
T Consensus 112 ~a~~~l~~L~~~L~~--~~~~~~~f~~~~psslD~L~~ayL~l~l~p 156 (168)
T PF11801_consen 112 LAMECLSLLEELLGE--WEEARYFFGDSKPSSLDCLAFAYLALLLVP 156 (168)
T ss_pred HHHHHHHHHHHHHhh--ccccccccCCCCCCHHHHHHHHHHHHHhcc
Confidence 467889999999998 6 8999877 999999999999887643
No 162
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=94.39 E-value=0.12 Score=32.41 Aligned_cols=69 Identities=17% Similarity=0.116 Sum_probs=41.9
Q ss_pred eeecccCCCc------hhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcC---------CCCccceEEeCCeeeeeH
Q 030456 2 LKLFSYWRSS------CSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKIN---------PIGYVPALVDGDFVVSDS 66 (177)
Q Consensus 2 ~~Ly~~~~s~------~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~---------p~~~~P~L~~~~~~l~es 66 (177)
+++|..+.+. .++++..+|+.++|+|+.+.+... +....++.+.. +....|-|..|+..+.+-
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~--e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdy 80 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMD--EEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDY 80 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT---HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEH
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCC--HHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeH
Confidence 4677666554 567899999999999998777653 33344444433 233457888999888776
Q ss_pred HHHHHH
Q 030456 67 FAILMY 72 (177)
Q Consensus 67 ~~I~~~ 72 (177)
-.+-+.
T Consensus 81 e~f~ea 86 (99)
T PF04908_consen 81 EDFEEA 86 (99)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 163
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=94.11 E-value=0.099 Score=28.40 Aligned_cols=54 Identities=30% Similarity=0.225 Sum_probs=34.4
Q ss_pred eeecccCCCchhHHHHHHHH-----HcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEe
Q 030456 2 LKLFSYWRSSCSHRVRIGLN-----LKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVD 58 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~-----~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~ 58 (177)
+.+|+..+|+.|.+.+..+. ..++.+....++-.. .........+...+|+++.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~P~~~~ 59 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDP---ALEKELKRYGVGGVPTLVV 59 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCCh---HHhhHHHhCCCccccEEEE
Confidence 35677889999999999999 344554444443221 1111124567789999884
No 164
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=94.03 E-value=0.083 Score=34.65 Aligned_cols=42 Identities=10% Similarity=0.005 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHHHHHHHHHhh
Q 030456 128 WAKTHIGKGFAALEKLLKDYAGKYATGDEVFLICIWHRSFMQRST 172 (177)
Q Consensus 128 ~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~~~l~~~~ 172 (177)
...+++...|..++.++.. ... ++.++|+-||.+|+.|+.+.
T Consensus 60 ~~i~~l~~~L~~l~~ll~~--~~~-~n~~ls~DDi~lFp~LR~Lt 101 (128)
T cd03199 60 QYIAALNALLEELDPLILS--SEA-VNGQLSTDDIILFPILRNLT 101 (128)
T ss_pred HHHHHHHHHHHHHHHHHcC--ccc-cCCcCCHHHHHHHHHHhhhh
Confidence 5556778888888888854 333 45689999999999998764
No 165
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=93.79 E-value=0.4 Score=28.22 Aligned_cols=56 Identities=20% Similarity=0.037 Sum_probs=35.4
Q ss_pred eecccCCCchhHHHHH----HHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeH
Q 030456 3 KLFSYWRSSCSHRVRI----GLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDS 66 (177)
Q Consensus 3 ~Ly~~~~s~~~~~v~~----~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es 66 (177)
++ ..+.||+|.++.- ++...|+.++...+ . ..++. ....-..+|+++.||......
T Consensus 4 ~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~--~----~~~~~-~~ygv~~vPalvIng~~~~~G 63 (76)
T PF13192_consen 4 KV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDI--E----DFEEI-EKYGVMSVPALVINGKVVFVG 63 (76)
T ss_dssp EE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEET--T----THHHH-HHTT-SSSSEEEETTEEEEES
T ss_pred EE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEc--c----CHHHH-HHcCCCCCCEEEECCEEEEEe
Confidence 45 4667999997665 44456766655544 2 23333 555667899999988765443
No 166
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=90.60 E-value=0.26 Score=31.36 Aligned_cols=29 Identities=21% Similarity=0.301 Sum_probs=22.4
Q ss_pred cccCCCchhHHHHHHHHHcCCcceEEEee
Q 030456 5 FSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (177)
Q Consensus 5 y~~~~s~~~~~v~~~L~~~gi~~~~~~v~ 33 (177)
|+.+.|.-|++++-.|+++|++|+.+.+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~ 29 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYK 29 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhh
Confidence 78899999999999999999999987654
No 167
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=88.34 E-value=3 Score=24.43 Aligned_cols=53 Identities=9% Similarity=0.069 Sum_probs=33.6
Q ss_pred eecccCCCchhHHHHHHHHH-----cCCcceEEEeecCCCCCCChhhhhcCCCCccceEE--eCCe
Q 030456 3 KLFSYWRSSCSHRVRIGLNL-----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDF 61 (177)
Q Consensus 3 ~Ly~~~~s~~~~~v~~~L~~-----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~ 61 (177)
..++.++|+.|+...-.+.. .++.+- .++.. ....+........+|++. .+|.
T Consensus 15 l~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~--~i~~~----~~~~~~~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 15 VDFWAPWCGPCKAIAPVLEELAEEYPKVKFV--KVDVD----ENPELAEEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred EEEECCCChhHHHhhHHHHHHHHHCCCceEE--EEECC----CChhHHHhcCcccccEEEEEECCE
Confidence 45678899999998888776 554444 34433 234444455556789877 3554
No 168
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=87.12 E-value=2.3 Score=26.02 Aligned_cols=58 Identities=12% Similarity=0.100 Sum_probs=35.6
Q ss_pred eeecccCCCchhHHHHHHHHH----cCCcceEEEeecCCCCCCChhhhhcCCCCccceEE--eCCeee
Q 030456 2 LKLFSYWRSSCSHRVRIGLNL----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV 63 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~~l 63 (177)
+.+|+.++|+.|....-.++. .+-.+....++... .+++.....-..+|++. .+|..+
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~----~~~l~~~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDE----DQEIAEAAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCC----CHHHHHHCCCeeccEEEEEECCeEE
Confidence 456778999999988777754 11134555666542 34444444456789877 456543
No 169
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=86.98 E-value=2 Score=35.56 Aligned_cols=57 Identities=26% Similarity=0.215 Sum_probs=39.5
Q ss_pred eeecccCCCchhHHHHHHH----HHc-CCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeee
Q 030456 2 LKLFSYWRSSCSHRVRIGL----NLK-GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVS 64 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L----~~~-gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~ 64 (177)
+++|..+.||+|-.+.-++ .+. +|..+.+.+.. .++..+.-.-..+|.++.||.++.
T Consensus 480 i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~------~~~~~~~~~v~~vP~~~i~~~~~~ 541 (555)
T TIGR03143 480 IKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSH------FPDLKDEYGIMSVPAIVVDDQQVY 541 (555)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcc------cHHHHHhCCceecCEEEECCEEEE
Confidence 5778899999998865543 444 67777666552 345555556778999998886553
No 170
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=86.48 E-value=5 Score=26.01 Aligned_cols=31 Identities=6% Similarity=-0.053 Sum_probs=19.3
Q ss_pred eecccCCCchhHHHHHHHH----HcCCcceEEEee
Q 030456 3 KLFSYWRSSCSHRVRIGLN----LKGLEYEYKAVN 33 (177)
Q Consensus 3 ~Ly~~~~s~~~~~v~~~L~----~~gi~~~~~~v~ 33 (177)
..|+.++||+|+++.=.|. ..++++-.+.++
T Consensus 28 v~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd 62 (122)
T TIGR01295 28 FFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSE 62 (122)
T ss_pred EEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECC
Confidence 4568899999999655554 344444444333
No 171
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=84.74 E-value=4.8 Score=26.84 Aligned_cols=70 Identities=14% Similarity=0.147 Sum_probs=46.0
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhc-C---CCCccceEEeCCeeeee---HHHHHHHHH
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKI-N---PIGYVPALVDGDFVVSD---SFAILMYLE 74 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~-~---p~~~~P~L~~~~~~l~e---s~~I~~~l~ 74 (177)
+..|.++.|.+|..-.-.|+.+|..+..+..+-. ...++. + .....=+.+.+|..+-. ..+|.+.|+
T Consensus 28 ~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~------~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll~ 101 (149)
T COG3019 28 MVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDF------LALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLLA 101 (149)
T ss_pred EEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcH------HHHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHHh
Confidence 5678899999999988889988877666544311 111111 0 11223367778877744 367899999
Q ss_pred hhC
Q 030456 75 EKY 77 (177)
Q Consensus 75 ~~~ 77 (177)
++.
T Consensus 102 ~~p 104 (149)
T COG3019 102 EKP 104 (149)
T ss_pred CCC
Confidence 876
No 172
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=84.39 E-value=0.99 Score=29.24 Aligned_cols=27 Identities=30% Similarity=0.459 Sum_probs=13.5
Q ss_pred ccceEEe--CCeeeeeHHHHHHHHHhhCC
Q 030456 52 YVPALVD--GDFVVSDSFAILMYLEEKYP 78 (177)
Q Consensus 52 ~~P~L~~--~~~~l~es~~I~~~l~~~~~ 78 (177)
.-|-|.+ +|+.+.|++||++|+.+-|-
T Consensus 35 ~~~~L~~~~~gF~L~e~NAIvrYl~nDF~ 63 (122)
T PF09635_consen 35 SGPLLKDKKSGFELFEPNAIVRYLANDFE 63 (122)
T ss_dssp -S--EEE-S--S----HHHHHHHHTT--T
T ss_pred ccceeeecCCceEEecccHHHHHHHhhcC
Confidence 3477854 78899999999999999765
No 173
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=84.27 E-value=1.9 Score=26.70 Aligned_cols=55 Identities=13% Similarity=-0.019 Sum_probs=32.4
Q ss_pred eeecccCCCchhHHHHHHH--------HHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEE
Q 030456 2 LKLFSYWRSSCSHRVRIGL--------NLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L--------~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~ 57 (177)
+..|+.++|+.|++..-.+ ...+ .+....++....+....++.+......+|++.
T Consensus 15 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 15 FVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYL 77 (104)
T ss_pred EEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEE
Confidence 4466789999999876433 1222 45666666543211134555555566799877
No 174
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=82.06 E-value=1.8 Score=35.46 Aligned_cols=71 Identities=15% Similarity=0.095 Sum_probs=45.0
Q ss_pred eeecccCCCchhHHHHHHHHHcCCc---ceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeH----HHHHHHHH
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLE---YEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDS----FAILMYLE 74 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~---~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es----~~I~~~l~ 74 (177)
+++|..+.||||..+..+++..-+. .+...++-. ..+++...-....||.+..++..+.+. ..++..+.
T Consensus 120 i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~----~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~ 195 (517)
T PRK15317 120 FETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGA----LFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLD 195 (517)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEch----hCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHh
Confidence 5788999999999877776543332 233333322 345666666677999999877665542 34566665
Q ss_pred hh
Q 030456 75 EK 76 (177)
Q Consensus 75 ~~ 76 (177)
+.
T Consensus 196 ~~ 197 (517)
T PRK15317 196 TG 197 (517)
T ss_pred cc
Confidence 54
No 175
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=81.81 E-value=2.1 Score=31.84 Aligned_cols=59 Identities=10% Similarity=0.098 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcC----CCCccceEEeCCeeeeeHHHHHHH
Q 030456 12 CSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKIN----PIGYVPALVDGDFVVSDSFAILMY 72 (177)
Q Consensus 12 ~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~----p~~~~P~L~~~~~~l~es~~I~~~ 72 (177)
.|..||.+|+-.+|.|+.+.|++... ..+++..+- -...+|.+..+|..|.....|.+-
T Consensus 149 ~C~~VR~ilesf~V~v~ERDVSMd~~--fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~~L 211 (281)
T KOG2824|consen 149 DCNAVRAILESFRVKVDERDVSMDSE--FREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVVRL 211 (281)
T ss_pred HHHHHHHHHHhCceEEEEecccccHH--HHHHHHHHHhcccccCccCeEEEccEEeccHHHhhhh
Confidence 58899999999999999999998752 345554432 246789888999999888877664
No 176
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=80.82 E-value=1.7 Score=35.54 Aligned_cols=74 Identities=19% Similarity=0.140 Sum_probs=44.1
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeH----HHHHHHHHhh
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDS----FAILMYLEEK 76 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es----~~I~~~l~~~ 76 (177)
+++|..+.||||-.+..+++..-+..-.+...+.++. ..+++...-....||.+..++..+.+. ..+++.+.+.
T Consensus 121 i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~-~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 121 FETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGA-LFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEET 198 (515)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEch-hCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhc
Confidence 5788899999999987777654332111222222221 345555555677999999877665543 2445555443
No 177
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=80.72 E-value=12 Score=23.77 Aligned_cols=57 Identities=16% Similarity=0.099 Sum_probs=37.1
Q ss_pred ecccCCCchhHHHHHHHHHcCC---cceEEEeecCCCCCCChhhhhcCCCCccceEE--eCCeeee
Q 030456 4 LFSYWRSSCSHRVRIGLNLKGL---EYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVVS 64 (177)
Q Consensus 4 Ly~~~~s~~~~~v~~~L~~~gi---~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~~l~ 64 (177)
.|+.++|+.|+.+.-.++...- ......|+.. ...+..+...-..+|++. .+|..+.
T Consensus 28 ~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~----~~~~l~~~~~v~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 28 HFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAE----KAPFLVEKLNIKVLPTVILFKNGKTVD 89 (113)
T ss_pred EEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcc----cCHHHHHHCCCccCCEEEEEECCEEEE
Confidence 4568999999988877754211 2355666654 244555556667899888 4776654
No 178
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=80.66 E-value=4.3 Score=29.32 Aligned_cols=67 Identities=12% Similarity=0.003 Sum_probs=50.6
Q ss_pred cCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHHh
Q 030456 7 YWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEE 75 (177)
Q Consensus 7 ~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~~ 75 (177)
.+-|++++++--+|...|++|....|-.. +.-+.-.++.+...+.|=|-.+|..+.+.-.|.+.+.+
T Consensus 151 ~P~CGFS~~~v~iL~~~nV~~~~fdIL~D--eelRqglK~fSdWPTfPQlyI~GEFiGGlDIl~~m~~~ 217 (227)
T KOG0911|consen 151 EPKCGFSRQLVGILQSHNVNYTIFDVLTD--EELRQGLKEFSDWPTFPQLYVKGEFIGGLDILKEMHEK 217 (227)
T ss_pred cccccccHHHHHHHHHcCCCeeEEeccCC--HHHHHHhhhhcCCCCccceeECCEeccCcHHHHHHhhc
Confidence 46689999999999999999887776533 22344455667788999999999988877766655443
No 179
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=80.30 E-value=5.4 Score=25.38 Aligned_cols=50 Identities=8% Similarity=-0.110 Sum_probs=32.4
Q ss_pred cccCCCchhHHHHHHHHHcCCc---ceEEEeecCCCCCCChhhhhcCCCCccceEEe
Q 030456 5 FSYWRSSCSHRVRIGLNLKGLE---YEYKAVNLVKGEQFSPDFLKINPIGYVPALVD 58 (177)
Q Consensus 5 y~~~~s~~~~~v~~~L~~~gi~---~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~ 58 (177)
++.++|++|+.++-++++..-. .+...++.. ..++....-.-..+|++..
T Consensus 29 f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d----~~~~l~~~~~v~~vPt~~i 81 (113)
T cd02975 29 SSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFD----EDKEKAEKYGVERVPTTIF 81 (113)
T ss_pred eCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCC----cCHHHHHHcCCCcCCEEEE
Confidence 3568999999888888754332 244445543 2455555556678998883
No 180
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=78.77 E-value=12 Score=22.60 Aligned_cols=70 Identities=11% Similarity=0.111 Sum_probs=44.0
Q ss_pred eeecccCCCchhHHHHHHHHH----cCCcceEEEeecCCCCCCChhhhhcCCCCccceEE--eCCeee------eeHHHH
Q 030456 2 LKLFSYWRSSCSHRVRIGLNL----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV------SDSFAI 69 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~~l------~es~~I 69 (177)
+..++.++|+.|+...-.++. .+-++....++.. ....+.+...-..+|++. .+|..+ .+...|
T Consensus 21 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~----~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l 96 (103)
T PF00085_consen 21 VVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCD----ENKELCKKYGVKSVPTIIFFKNGKEVKRYNGPRNAESL 96 (103)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETT----TSHHHHHHTTCSSSSEEEEEETTEEEEEEESSSSHHHH
T ss_pred EEEEeCCCCCccccccceecccccccccccccchhhhh----ccchhhhccCCCCCCEEEEEECCcEEEEEECCCCHHHH
Confidence 345678999999998755542 2225666667754 345566666677899888 455443 244566
Q ss_pred HHHHHh
Q 030456 70 LMYLEE 75 (177)
Q Consensus 70 ~~~l~~ 75 (177)
..+|.+
T Consensus 97 ~~~i~~ 102 (103)
T PF00085_consen 97 IEFIEK 102 (103)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 666654
No 181
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=76.72 E-value=12 Score=26.77 Aligned_cols=54 Identities=13% Similarity=0.067 Sum_probs=34.3
Q ss_pred eeecccCCCchhHHHHHHHHHcCC---cceEEEeecCCCCCCChhhhhcCCCCccceEEeC
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGL---EYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDG 59 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi---~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~ 59 (177)
+++|+.++||+|..+..+++..-- ......++.. ..++..+...-..+|+++.+
T Consensus 137 I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~----~~~~~~~~~~V~~vPtl~i~ 193 (215)
T TIGR02187 137 IEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEAN----ENPDLAEKYGVMSVPKIVIN 193 (215)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCC----CCHHHHHHhCCccCCEEEEe
Confidence 356789999999998877775321 1233345543 34555555556679999853
No 182
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=75.20 E-value=9.2 Score=27.47 Aligned_cols=58 Identities=24% Similarity=0.184 Sum_probs=42.0
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhh-cCCCCccceEEeCCeee
Q 030456 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLK-INPIGYVPALVDGDFVV 63 (177)
Q Consensus 1 m~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~-~~p~~~~P~L~~~~~~l 63 (177)
|+++|.+..|..|....-.|+.+|+-=.++.++.. .+-|.. .|---.+|.+..||..+
T Consensus 12 ~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~-----~p~f~~~~~~V~SvP~Vf~DGel~ 70 (265)
T COG5494 12 EVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAE-----LPPFLAFEKGVISVPSVFIDGELV 70 (265)
T ss_pred EEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcC-----CChHHHhhcceeecceEEEcCeEE
Confidence 57899999999999999999999997676666633 222222 23345689888777654
No 183
>PTZ00051 thioredoxin; Provisional
Probab=74.48 E-value=13 Score=22.37 Aligned_cols=56 Identities=11% Similarity=-0.014 Sum_probs=33.2
Q ss_pred eecccCCCchhHHHHHHHHH---cCCcceEEEeecCCCCCCChhhhhcCCCCccceEE--eCCee
Q 030456 3 KLFSYWRSSCSHRVRIGLNL---KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFV 62 (177)
Q Consensus 3 ~Ly~~~~s~~~~~v~~~L~~---~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~~ 62 (177)
..|+.++|+.|+...-.++. ....+....++.. ....+.+...-..+|+++ .+|..
T Consensus 23 i~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~----~~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (98)
T PTZ00051 23 VDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVD----ELSEVAEKENITSMPTFKVFKNGSV 83 (98)
T ss_pred EEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECc----chHHHHHHCCCceeeEEEEEeCCeE
Confidence 35668999999987665554 2222344455543 234455555567899877 35544
No 184
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=68.63 E-value=26 Score=21.96 Aligned_cols=56 Identities=16% Similarity=0.001 Sum_probs=32.0
Q ss_pred eecccCCCchhHHHHHHHH-----HcCCcceEEEeecCCCCCCChhhhhcCCCCccceEE--eCCee
Q 030456 3 KLFSYWRSSCSHRVRIGLN-----LKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFV 62 (177)
Q Consensus 3 ~Ly~~~~s~~~~~v~~~L~-----~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~~ 62 (177)
..++.++|+.|+...-.++ ..+.......++... .........-..+|++. .+|..
T Consensus 29 V~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~----~~~l~~~~~V~~~Pt~~i~~~g~~ 91 (111)
T cd02963 29 IKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH----ERRLARKLGAHSVPAIVGIINGQV 91 (111)
T ss_pred EEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc----cHHHHHHcCCccCCEEEEEECCEE
Confidence 3456899999987654432 223334455555432 33444444567899887 46654
No 185
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=67.26 E-value=21 Score=22.47 Aligned_cols=72 Identities=15% Similarity=0.021 Sum_probs=42.4
Q ss_pred ecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCC-hhhhhcC---CCCccceEEeCCe-eeeeHHHHHHHHHhh
Q 030456 4 LFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFS-PDFLKIN---PIGYVPALVDGDF-VVSDSFAILMYLEEK 76 (177)
Q Consensus 4 Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~-~~~~~~~---p~~~~P~L~~~~~-~l~es~~I~~~l~~~ 76 (177)
|++...||+|.+..-.+...+..-....++........ ......+ ....+-+ ..+|. +..++.|+.+-+...
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~g~~~~~G~~A~~~l~~~~ 77 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHL-IDDGERVYRGSDAVLRLLRRL 77 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEE-ecCCCEEEEcHHHHHHHHHHc
Confidence 45688999999988888887764455555543211110 0111111 1223333 55665 999999999887664
No 186
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=66.75 E-value=25 Score=21.03 Aligned_cols=57 Identities=12% Similarity=0.026 Sum_probs=34.2
Q ss_pred eecccCCCchhHHHHHHHHH---c-CCcceEEEeecCCCCCCChhhhhcCCCCccceEE--eCCeee
Q 030456 3 KLFSYWRSSCSHRVRIGLNL---K-GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV 63 (177)
Q Consensus 3 ~Ly~~~~s~~~~~v~~~L~~---~-gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~~l 63 (177)
..|+.++|+.|++..-.|+. . +..+....++.. ...++.+......+|++. .+|..+
T Consensus 19 v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~----~~~~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 19 LHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAE----ELPEISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccc----cCHHHHHhcCCccccEEEEEECCEEE
Confidence 34568999999988776664 2 334555555543 233444444456799877 466543
No 187
>PHA03075 glutaredoxin-like protein; Provisional
Probab=63.49 E-value=13 Score=23.98 Aligned_cols=66 Identities=23% Similarity=0.174 Sum_probs=44.9
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHHhhC
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKY 77 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~~~~ 77 (177)
+.|+|-+.|+-|+-+.-+|.+..=+|+..+|+... | ....|.+=+|-.++. +.=-+.+.+|+.+.|
T Consensus 5 LILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlS-------f--FsK~g~v~~lg~d~~-y~lInn~~~~lgne~ 70 (123)
T PHA03075 5 LILFGKPLCSVCESISEALKELEDEYDILRVNILS-------F--FSKDGQVKVLGMDKG-YTLINNFFKHLGNEY 70 (123)
T ss_pred EEEeCCcccHHHHHHHHHHHHhhccccEEEEEeee-------e--eccCCceEEEecccc-eehHHHHHHhhcccE
Confidence 56899999999999999999999999999998653 1 112344444543321 222345667777654
No 188
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=61.48 E-value=11 Score=23.93 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=21.6
Q ss_pred cceEE-eCCeeeeeHHHHHHHHHhhCC
Q 030456 53 VPALV-DGDFVVSDSFAILMYLEEKYP 78 (177)
Q Consensus 53 ~P~L~-~~~~~l~es~~I~~~l~~~~~ 78 (177)
+|.+. .+|.++++|..|++++++++.
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H~ 28 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRHD 28 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcchH
Confidence 35444 689999999999999999875
No 189
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=61.30 E-value=35 Score=24.36 Aligned_cols=53 Identities=8% Similarity=-0.031 Sum_probs=30.7
Q ss_pred eeccc---CCCchhHHHHHHHHHcCCcc---eEEEeecCCCCCCChhhhhcCCCCccceEE
Q 030456 3 KLFSY---WRSSCSHRVRIGLNLKGLEY---EYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (177)
Q Consensus 3 ~Ly~~---~~s~~~~~v~~~L~~~gi~~---~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~ 57 (177)
.+|.. ++|+.|..+.-.+++..-.| +...++... ...++..+...-..+|++.
T Consensus 24 ~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~--~~~~~l~~~~~V~~~Pt~~ 82 (215)
T TIGR02187 24 VVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDT--PEDKEEAEKYGVERVPTTI 82 (215)
T ss_pred EEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCC--cccHHHHHHcCCCccCEEE
Confidence 45656 89999998877776542222 222333321 1234455555566799888
No 190
>PHA02278 thioredoxin-like protein
Probab=60.01 E-value=40 Score=21.05 Aligned_cols=59 Identities=12% Similarity=0.071 Sum_probs=33.4
Q ss_pred cccCCCchhHHHHHHHHHc----CCcceEEEeecCCCCCCChhhhhcCCCCccceEE--eCCeee
Q 030456 5 FSYWRSSCSHRVRIGLNLK----GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV 63 (177)
Q Consensus 5 y~~~~s~~~~~v~~~L~~~----gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~~l 63 (177)
|+.++|+.|+...=.++.. +.......++........++..+..--..+|++. .+|..+
T Consensus 21 F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 21 ITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLV 85 (103)
T ss_pred EECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEE
Confidence 4578999998766555432 2223345555543111124455555567899888 466654
No 191
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=58.12 E-value=34 Score=22.18 Aligned_cols=61 Identities=7% Similarity=-0.099 Sum_probs=27.1
Q ss_pred ccCCCchhHHHHHH----HHHcCCcceEEEeecCC---CCCCChhhhh--cCCCCccceEEe--CCeeeeeH
Q 030456 6 SYWRSSCSHRVRIG----LNLKGLEYEYKAVNLVK---GEQFSPDFLK--INPIGYVPALVD--GDFVVSDS 66 (177)
Q Consensus 6 ~~~~s~~~~~v~~~----L~~~gi~~~~~~v~~~~---~~~~~~~~~~--~~p~~~~P~L~~--~~~~l~es 66 (177)
+.+|||.|.++.-. +....-....+.+...+ +......|.. .-....||+|.. ++..+.|.
T Consensus 34 g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~~~~rL~e~ 105 (119)
T PF06110_consen 34 GQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWETGERLVEE 105 (119)
T ss_dssp S-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECTSS-EEEHH
T ss_pred CCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEECCCCccchh
Confidence 56789999997644 44432234444444432 0111223322 122456899993 44455554
No 192
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=58.11 E-value=36 Score=21.70 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=12.9
Q ss_pred eeecccCCCchhHHHHH
Q 030456 2 LKLFSYWRSSCSHRVRI 18 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~ 18 (177)
+..|+.++|++|++..-
T Consensus 18 lv~f~a~wC~~C~~~~~ 34 (125)
T cd02951 18 LLLFSQPGCPYCDKLKR 34 (125)
T ss_pred EEEEeCCCCHHHHHHHH
Confidence 44567899999998653
No 193
>PRK09381 trxA thioredoxin; Provisional
Probab=57.49 E-value=43 Score=20.63 Aligned_cols=56 Identities=14% Similarity=0.013 Sum_probs=32.7
Q ss_pred ecccCCCchhHHHHHHHHH----cCCcceEEEeecCCCCCCChhhhhcCCCCccceEE--eCCeee
Q 030456 4 LFSYWRSSCSHRVRIGLNL----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV 63 (177)
Q Consensus 4 Ly~~~~s~~~~~v~~~L~~----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~~l 63 (177)
.++.++||.|+...-.++. .+-.+....++... .+...+...-..+|++. .+|..+
T Consensus 27 ~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 27 DFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ----NPGTAPKYGIRGIPTLLLFKNGEVA 88 (109)
T ss_pred EEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCC----ChhHHHhCCCCcCCEEEEEeCCeEE
Confidence 3457899999987644432 22235556666543 23333344556799887 466544
No 194
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.06 E-value=60 Score=21.23 Aligned_cols=69 Identities=13% Similarity=0.048 Sum_probs=36.2
Q ss_pred ccCCCchhHH----HHHHHHHcCCcceEEEeecCCC---CCCChhhhhcCCC--CccceEEe-C--CeeeeeHHHHHHHH
Q 030456 6 SYWRSSCSHR----VRIGLNLKGLEYEYKAVNLVKG---EQFSPDFLKINPI--GYVPALVD-G--DFVVSDSFAILMYL 73 (177)
Q Consensus 6 ~~~~s~~~~~----v~~~L~~~gi~~~~~~v~~~~~---~~~~~~~~~~~p~--~~~P~L~~-~--~~~l~es~~I~~~l 73 (177)
+-+|||.|.+ +.-+|++..-....+.|...+. ......| +.+|. .-||+|.. + +..+.+...-..+|
T Consensus 41 GqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~F-R~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~L 119 (128)
T KOG3425|consen 41 GQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPF-RKDPGILTAVPTLLRWKRQPQRLDGLQCLNDHL 119 (128)
T ss_pred CCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCcc-ccCCCceeecceeeEEcCccccchHhHhhHHHH
Confidence 4578999988 4556665555555666655431 1111222 22222 35788883 2 34455555544455
Q ss_pred Hh
Q 030456 74 EE 75 (177)
Q Consensus 74 ~~ 75 (177)
.+
T Consensus 120 ve 121 (128)
T KOG3425|consen 120 VE 121 (128)
T ss_pred HH
Confidence 44
No 195
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=53.13 E-value=60 Score=20.99 Aligned_cols=50 Identities=8% Similarity=-0.025 Sum_probs=26.6
Q ss_pred CCCchhHHHHHHHH----HcCCcceEEEeecCCCC---CCChhhhhcCCCC-ccceEE
Q 030456 8 WRSSCSHRVRIGLN----LKGLEYEYKAVNLVKGE---QFSPDFLKINPIG-YVPALV 57 (177)
Q Consensus 8 ~~s~~~~~v~~~L~----~~gi~~~~~~v~~~~~~---~~~~~~~~~~p~~-~~P~L~ 57 (177)
+|||.|+++.-.++ ...-.+....|+..+.. ....++.....-. .+|++.
T Consensus 38 ~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~ 95 (119)
T cd02952 38 SWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLL 95 (119)
T ss_pred CCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEE
Confidence 79999997654443 33223555666654311 1123443322223 699888
No 196
>PRK09266 hypothetical protein; Provisional
Probab=51.83 E-value=15 Score=27.19 Aligned_cols=60 Identities=25% Similarity=0.278 Sum_probs=40.3
Q ss_pred HHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHHhhCC
Q 030456 19 GLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYP 78 (177)
Q Consensus 19 ~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~~~~~ 78 (177)
.+...|++++...++..+-....+-|.-.+-.+-+||-..|+..+.+...|.+.|.+.|-
T Consensus 200 ~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i~~~~~~~~~~~~~~l~~~~~ 259 (266)
T PRK09266 200 GLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAIDDVALPDSHALLELLRRAYE 259 (266)
T ss_pred HHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEECCEECCCCchHHHHHHHHHH
Confidence 455678999888888654222333444444458899999888877655677777776664
No 197
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=51.27 E-value=28 Score=21.05 Aligned_cols=53 Identities=9% Similarity=-0.029 Sum_probs=27.5
Q ss_pred eecccCCCchhHHHHHHHH----HcC--CcceEEEeecCCCCCCChhhhhcCCCCccceEE
Q 030456 3 KLFSYWRSSCSHRVRIGLN----LKG--LEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (177)
Q Consensus 3 ~Ly~~~~s~~~~~v~~~L~----~~g--i~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~ 57 (177)
.+|+.++|+.|+...-.+. ... -.+....++... .....+.+...-..+|+++
T Consensus 22 v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~--~~~~~~~~~~~i~~~Pt~~ 80 (104)
T cd02997 22 VMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK--PEHDALKEEYNVKGFPTFK 80 (104)
T ss_pred EEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC--CccHHHHHhCCCccccEEE
Confidence 4566889999998643322 111 223343444332 1134444444445789887
No 198
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=50.99 E-value=20 Score=21.23 Aligned_cols=27 Identities=15% Similarity=0.199 Sum_probs=22.1
Q ss_pred CCCchhHHHHHHHHHcCCcceEEEeec
Q 030456 8 WRSSCSHRVRIGLNLKGLEYEYKAVNL 34 (177)
Q Consensus 8 ~~s~~~~~v~~~L~~~gi~~~~~~v~~ 34 (177)
.--+|++|+.-+|+..|++|+..+-..
T Consensus 13 ~evGF~rk~L~I~E~~~is~Eh~PSGI 39 (76)
T cd04911 13 REVGFGRKLLSILEDNGISYEHMPSGI 39 (76)
T ss_pred chhcHHHHHHHHHHHcCCCEeeecCCC
Confidence 335799999999999999999775543
No 199
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=50.84 E-value=55 Score=19.83 Aligned_cols=50 Identities=18% Similarity=0.046 Sum_probs=29.4
Q ss_pred ecccCCCchhHHHHHHHHHcCC----cceEEEeecCCCCCCChhhhhcCCCCccceEE
Q 030456 4 LFSYWRSSCSHRVRIGLNLKGL----EYEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (177)
Q Consensus 4 Ly~~~~s~~~~~v~~~L~~~gi----~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~ 57 (177)
.|+.++|+.|+...-.++...- .+....++... .....+...-..+|++.
T Consensus 24 ~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~ 77 (101)
T cd03003 24 NFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGD----DRMLCRSQGVNSYPSLY 77 (101)
T ss_pred EEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCc----cHHHHHHcCCCccCEEE
Confidence 4568999999886655543211 24455566542 33444444456789886
No 200
>PF04705 TSNR_N: Thiostrepton-resistance methylase, N terminus; InterPro: IPR006795 This region is found in some members of the SpoU-type rRNA methylase family (IPR001537 from INTERPRO).; GO: 0008649 rRNA methyltransferase activity, 0046677 response to antibiotic; PDB: 3GYQ_B 3NK6_A 3NK7_A.
Probab=50.45 E-value=1.6 Score=27.25 Aligned_cols=35 Identities=9% Similarity=0.151 Sum_probs=23.1
Q ss_pred eeecccCCCchhHHHHHHHHHcCCcceEEEeecCC
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVK 36 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~ 36 (177)
+.+|+...+|+.-.+..+++..|||.+.+.....+
T Consensus 51 ieVYg~~~~p~~~~ll~~c~~r~Ipvrlv~~~v~N 85 (115)
T PF04705_consen 51 IEVYGSDGSPVPPELLAACRQRGIPVRLVDSAVVN 85 (115)
T ss_dssp EEEEEETTS---CCCCHHHHCTT--EEEE-HHHHC
T ss_pred EEEeeecCCCCChHHHHHHHhcCCceEEecHHHHH
Confidence 56788888888888888888999998888766544
No 201
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=49.33 E-value=55 Score=19.48 Aligned_cols=55 Identities=16% Similarity=0.036 Sum_probs=33.7
Q ss_pred ecccCCCchhHHHHHHHHHcC----CcceEEEeecCCCCCCChhhhhcCCCCccceEE--eCCee
Q 030456 4 LFSYWRSSCSHRVRIGLNLKG----LEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFV 62 (177)
Q Consensus 4 Ly~~~~s~~~~~v~~~L~~~g----i~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~~ 62 (177)
.++.++|+.|++..-.++... -.+....++... ..++.+.-.-..+|+++ .+|..
T Consensus 18 ~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~----~~~l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 18 DFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDA----QPQIAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred EEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccC----CHHHHHHcCCCCCCEEEEEeCCEE
Confidence 456889999998766665322 134455566542 44555555556799888 56654
No 202
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=49.11 E-value=81 Score=21.34 Aligned_cols=57 Identities=11% Similarity=0.121 Sum_probs=32.4
Q ss_pred ecccCCCchhHHHHHHHHH-----cCCcceEEEeecCCCCCCChhhhhcCCC------CccceEE--eCCeeee
Q 030456 4 LFSYWRSSCSHRVRIGLNL-----KGLEYEYKAVNLVKGEQFSPDFLKINPI------GYVPALV--DGDFVVS 64 (177)
Q Consensus 4 Ly~~~~s~~~~~v~~~L~~-----~gi~~~~~~v~~~~~~~~~~~~~~~~p~------~~~P~L~--~~~~~l~ 64 (177)
.|+.++|+.|+...-.++. .+-.++...|+... .++..+...- ..+|++. .+|..+.
T Consensus 53 ~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~----~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 53 EFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR----FPNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC----CHHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 4568899999887655442 22235566677553 2333332222 2489888 4676554
No 203
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=48.83 E-value=22 Score=24.94 Aligned_cols=21 Identities=10% Similarity=0.115 Sum_probs=17.1
Q ss_pred eeecccCCCchhHHHHHHHHH
Q 030456 2 LKLFSYWRSSCSHRVRIGLNL 22 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~ 22 (177)
+.+|..+.||+|++..-.+..
T Consensus 81 i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 81 VYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred EEEEECCCCccHHHHHHHHhh
Confidence 346778899999999988874
No 204
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=48.53 E-value=71 Score=20.51 Aligned_cols=55 Identities=15% Similarity=0.073 Sum_probs=34.2
Q ss_pred cccCCCchhHHHHHHHHHcCCc----ceEEEeecCCCCCCChhhhhcCCCCccceEE--eCCeee
Q 030456 5 FSYWRSSCSHRVRIGLNLKGLE----YEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV 63 (177)
Q Consensus 5 y~~~~s~~~~~v~~~L~~~gi~----~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~~l 63 (177)
|+.+||+-|+.+.-.+++.--. .....|+... .++......-..+|++. .+|..+
T Consensus 21 F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~----~~~la~~~~V~~iPTf~~fk~G~~v 81 (114)
T cd02954 21 FGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDE----VPDFNKMYELYDPPTVMFFFRNKHM 81 (114)
T ss_pred EECCCChhHHHHHHHHHHHHHHccCceEEEEEECCC----CHHHHHHcCCCCCCEEEEEECCEEE
Confidence 5688999999876666432222 3445666553 45565555566799888 466543
No 205
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=47.32 E-value=18 Score=23.73 Aligned_cols=52 Identities=10% Similarity=0.089 Sum_probs=25.0
Q ss_pred eecccCCCchhHHH----HHHHHHc-CCcceEEEeecCCCCCCChhhhhcCCCCccceEE
Q 030456 3 KLFSYWRSSCSHRV----RIGLNLK-GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (177)
Q Consensus 3 ~Ly~~~~s~~~~~v----~~~L~~~-gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~ 57 (177)
.++.-+|||.|.+. .-+++.. +++++....+ ........|+. +....+|+++
T Consensus 46 lvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd--~~~el~~~~lt-~g~~~IP~~I 102 (129)
T PF14595_consen 46 LVITETWCGDCARNVPVLAKIAEANPNIEVRIILRD--ENKELMDQYLT-NGGRSIPTFI 102 (129)
T ss_dssp EEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HH--HHHHHTTTTTT--SS--SSEEE
T ss_pred EEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEec--CChhHHHHHHh-CCCeecCEEE
Confidence 34567899999873 3344444 5655555443 21122344444 6677899988
No 206
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=47.16 E-value=74 Score=20.27 Aligned_cols=59 Identities=22% Similarity=0.328 Sum_probs=29.6
Q ss_pred ecccCCCchhHHHHHHHHHc-C---CcceEEEeecCCCCCCChhhhhcCCCC-ccceEE--e-CCeeee
Q 030456 4 LFSYWRSSCSHRVRIGLNLK-G---LEYEYKAVNLVKGEQFSPDFLKINPIG-YVPALV--D-GDFVVS 64 (177)
Q Consensus 4 Ly~~~~s~~~~~v~~~L~~~-g---i~~~~~~v~~~~~~~~~~~~~~~~p~~-~~P~L~--~-~~~~l~ 64 (177)
.++.++|+.|++..-.+... . ..-..+.++...... +.-...+..+ .+|++. + +|..+.
T Consensus 25 ~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~--~~~~~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 25 LIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEE--PKDEEFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred EEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCC--chhhhcccCCCccceEEEECCCCCCch
Confidence 35579999999875555541 1 122334444432211 1112233443 489887 2 565543
No 207
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=47.04 E-value=16 Score=20.65 Aligned_cols=31 Identities=16% Similarity=0.066 Sum_probs=19.4
Q ss_pred eecccCCCchhHHHHHHHHHcCCcceEEEee
Q 030456 3 KLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (177)
Q Consensus 3 ~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~ 33 (177)
++|......-+..++-.|+..||++....-.
T Consensus 2 ~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~ 32 (67)
T PF09413_consen 2 KLYTAGDPIEAELIKGLLEENGIPAFVKNEH 32 (67)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT--EE--S--
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEECCc
Confidence 5676666778899999999999998876433
No 208
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=47.00 E-value=31 Score=23.60 Aligned_cols=35 Identities=14% Similarity=0.043 Sum_probs=23.6
Q ss_pred eec-ccCCCchhHH-------HHHHHHHcCCcceEEEeecCCC
Q 030456 3 KLF-SYWRSSCSHR-------VRIGLNLKGLEYEYKAVNLVKG 37 (177)
Q Consensus 3 ~Ly-~~~~s~~~~~-------v~~~L~~~gi~~~~~~v~~~~~ 37 (177)
.|| +-.+||-|+. ..-.+...+-||+++.|+.++.
T Consensus 37 ~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~ 79 (157)
T KOG2501|consen 37 GLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRD 79 (157)
T ss_pred EEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCC
Confidence 345 3467887765 3444556777899999998753
No 209
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=45.68 E-value=79 Score=20.55 Aligned_cols=63 Identities=10% Similarity=0.008 Sum_probs=34.1
Q ss_pred ecccCCCchhHHHHH-HHHH------cCCcceEEEeecCCCCCCChhhhh----cCCCCccceEE---eCCeeeeeH
Q 030456 4 LFSYWRSSCSHRVRI-GLNL------KGLEYEYKAVNLVKGEQFSPDFLK----INPIGYVPALV---DGDFVVSDS 66 (177)
Q Consensus 4 Ly~~~~s~~~~~v~~-~L~~------~gi~~~~~~v~~~~~~~~~~~~~~----~~p~~~~P~L~---~~~~~l~es 66 (177)
.++..+|++|++..- .+.. ..-.|..+.++..........+.+ .+..+-.|+++ .+|..+..+
T Consensus 21 ~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 21 SIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred EEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence 356899999998742 2222 223577777776432111111111 22345689877 367776655
No 210
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=45.40 E-value=41 Score=21.07 Aligned_cols=58 Identities=14% Similarity=0.095 Sum_probs=33.4
Q ss_pred eecccCCCchhHHHHHHHHHcCC---cceEEEeecCCCCCCChhhhhcCCCCccceEE--eCCeeeee
Q 030456 3 KLFSYWRSSCSHRVRIGLNLKGL---EYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVVSD 65 (177)
Q Consensus 3 ~Ly~~~~s~~~~~v~~~L~~~gi---~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~~l~e 65 (177)
..|+.++|+.|+.+.-.++..-- ......++... . ...+...-..+|++. .+|..+..
T Consensus 29 v~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~----~-~l~~~~~i~~~Pt~~~f~~G~~v~~ 91 (113)
T cd02957 29 VHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEK----A-FLVNYLDIKVLPTLLVYKNGELIDN 91 (113)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchh----h-HHHHhcCCCcCCEEEEEECCEEEEE
Confidence 34568999999987666653211 12344555432 1 444444456799888 46765543
No 211
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=45.39 E-value=60 Score=18.75 Aligned_cols=27 Identities=19% Similarity=0.128 Sum_probs=21.9
Q ss_pred CccceEEeCCeeeeeHHHHHHHHHhhCC
Q 030456 51 GYVPALVDGDFVVSDSFAILMYLEEKYP 78 (177)
Q Consensus 51 ~~~P~L~~~~~~l~es~~I~~~l~~~~~ 78 (177)
.+=||+..+| ..+|-.+|.+||.+..+
T Consensus 14 M~dPVi~~~G-~tyer~~I~~~l~~~~~ 40 (73)
T PF04564_consen 14 MRDPVILPSG-HTYERSAIERWLEQNGG 40 (73)
T ss_dssp -SSEEEETTS-EEEEHHHHHHHHCTTSS
T ss_pred hhCceeCCcC-CEEcHHHHHHHHHcCCC
Confidence 3459999888 88999999999999443
No 212
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=44.99 E-value=88 Score=20.91 Aligned_cols=75 Identities=12% Similarity=-0.089 Sum_probs=46.1
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCC----ccceEEeCCeeeeeHHHHHHHHHhh
Q 030456 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIG----YVPALVDGDFVVSDSFAILMYLEEK 76 (177)
Q Consensus 1 m~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~----~~P~L~~~~~~l~es~~I~~~l~~~ 76 (177)
++++++.-.|+.|-..--+|..+.-.-..+..++... ..-...+..+.. ..=.++.+|..+.+|.|+++-+...
T Consensus 9 ~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e--~g~~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~~i~~~L 86 (137)
T COG3011 9 DLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSE--PGQALLEAAGLDPEDVDSVLLVEAGQLLVGSDAAIRILRLL 86 (137)
T ss_pred CEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCc--hhhhHHhhcCCChhhhheeeEecCCceEeccHHHHHHHHHC
Confidence 3466668889999887777777766655555444321 111222222221 1224457899999999999988776
Q ss_pred C
Q 030456 77 Y 77 (177)
Q Consensus 77 ~ 77 (177)
-
T Consensus 87 ~ 87 (137)
T COG3011 87 P 87 (137)
T ss_pred C
Confidence 4
No 213
>PF13728 TraF: F plasmid transfer operon protein
Probab=44.66 E-value=75 Score=22.89 Aligned_cols=31 Identities=6% Similarity=-0.003 Sum_probs=20.8
Q ss_pred eecccCCCchhHH----HHHHHHHcCCcceEEEee
Q 030456 3 KLFSYWRSSCSHR----VRIGLNLKGLEYEYKAVN 33 (177)
Q Consensus 3 ~Ly~~~~s~~~~~----v~~~L~~~gi~~~~~~v~ 33 (177)
.+++...|++|+. ++.+-...|++...+.+|
T Consensus 125 ~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~D 159 (215)
T PF13728_consen 125 FFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLD 159 (215)
T ss_pred EEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecC
Confidence 4567789999987 455555677765555444
No 214
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=43.19 E-value=38 Score=23.27 Aligned_cols=34 Identities=12% Similarity=0.061 Sum_probs=25.0
Q ss_pred eeecccCCCchhHHHHH----HHHHc-CCcceEEEeecC
Q 030456 2 LKLFSYWRSSCSHRVRI----GLNLK-GLEYEYKAVNLV 35 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~----~L~~~-gi~~~~~~v~~~ 35 (177)
+++|+...||||....- +++.. ++.++.+++.+.
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 57888999999987443 44445 788888888764
No 215
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=42.87 E-value=31 Score=25.47 Aligned_cols=20 Identities=5% Similarity=-0.014 Sum_probs=15.7
Q ss_pred eeecccCCCchhHHHHHHHH
Q 030456 2 LKLFSYWRSSCSHRVRIGLN 21 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~ 21 (177)
+.+|..+.||||++.+-.+.
T Consensus 121 I~vFtDp~CpyC~kl~~~l~ 140 (251)
T PRK11657 121 VYVFADPNCPYCKQFWQQAR 140 (251)
T ss_pred EEEEECCCChhHHHHHHHHH
Confidence 34677889999999887665
No 216
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=40.34 E-value=35 Score=23.76 Aligned_cols=33 Identities=15% Similarity=0.170 Sum_probs=21.2
Q ss_pred eeecccCCCchhHHHH----HHHHHc----CCcceEEEeec
Q 030456 2 LKLFSYWRSSCSHRVR----IGLNLK----GLEYEYKAVNL 34 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~----~~L~~~----gi~~~~~~v~~ 34 (177)
+++|....||||.-.. -+.+.. ++.++.+.+.+
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~~L 41 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPFEL 41 (201)
T ss_pred CeEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeeeee
Confidence 4678899999998444 344444 45555555544
No 217
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=40.29 E-value=39 Score=20.71 Aligned_cols=56 Identities=13% Similarity=-0.064 Sum_probs=30.4
Q ss_pred eecccCCCchhHHHHHHHHH----cC-CcceEEEeecCCCCCCChhhhhcCCCCccceEE--eCCeee
Q 030456 3 KLFSYWRSSCSHRVRIGLNL----KG-LEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV 63 (177)
Q Consensus 3 ~Ly~~~~s~~~~~v~~~L~~----~g-i~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~~l 63 (177)
..|+.++|+.|+...-.++. .+ -......++.. ..+..+...-..+|++. .+|..+
T Consensus 22 v~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-----~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (102)
T cd02948 22 VDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-----TIDTLKRYRGKCEPTFLFYKNGELV 84 (102)
T ss_pred EEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-----CHHHHHHcCCCcCcEEEEEECCEEE
Confidence 34568999999876555542 11 12334444433 22334444456789777 466543
No 218
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=40.19 E-value=24 Score=21.81 Aligned_cols=33 Identities=15% Similarity=0.146 Sum_probs=19.3
Q ss_pred eecccCCCchhHHHHHHHHH-----cCC--cceEEEeecC
Q 030456 3 KLFSYWRSSCSHRVRIGLNL-----KGL--EYEYKAVNLV 35 (177)
Q Consensus 3 ~Ly~~~~s~~~~~v~~~L~~-----~gi--~~~~~~v~~~ 35 (177)
.+|+.++||+|++..-.+.. ..+ .+....++..
T Consensus 10 ~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (112)
T PF13098_consen 10 VVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNID 49 (112)
T ss_dssp EEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESH
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecC
Confidence 45678999999988665552 111 3556666654
No 219
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=39.58 E-value=21 Score=20.07 Aligned_cols=21 Identities=43% Similarity=0.466 Sum_probs=15.4
Q ss_pred eeecc----cCCCchhHHHHHHHHH
Q 030456 2 LKLFS----YWRSSCSHRVRIGLNL 22 (177)
Q Consensus 2 ~~Ly~----~~~s~~~~~v~~~L~~ 22 (177)
|+||- -..|.+|+||-.+|..
T Consensus 3 mKLYRfiTGpDDssFChrvta~LN~ 27 (70)
T COG5515 3 MKLYRFITGPDDSSFCHRVTAALNK 27 (70)
T ss_pred ceeeEeecCCchHHHHHHHHHHHhC
Confidence 46663 3457899999988874
No 220
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=38.22 E-value=35 Score=19.94 Aligned_cols=22 Identities=9% Similarity=-0.209 Sum_probs=17.4
Q ss_pred eeecccCCCchhHHHHHHHHHc
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLK 23 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~ 23 (177)
+.+|....||+|....-.+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 3567789999999988777654
No 221
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=37.53 E-value=75 Score=19.27 Aligned_cols=51 Identities=10% Similarity=-0.086 Sum_probs=29.5
Q ss_pred eecccCCCchhHHHHHHHHHc----CCcceEEEeecCCCCCCChhhhhcCCCCccceEE
Q 030456 3 KLFSYWRSSCSHRVRIGLNLK----GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (177)
Q Consensus 3 ~Ly~~~~s~~~~~v~~~L~~~----gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~ 57 (177)
..|+.++|+.|++..-.++.. +-.+....++.. ...++.+...-..+|++.
T Consensus 24 v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~----~~~~~~~~~~i~~~Pt~~ 78 (104)
T cd03004 24 VDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQ----KYESLCQQANIRAYPTIR 78 (104)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECC----chHHHHHHcCCCcccEEE
Confidence 345689999998765444422 112444555544 234444444556789887
No 222
>PRK10996 thioredoxin 2; Provisional
Probab=37.11 E-value=1.2e+02 Score=19.89 Aligned_cols=57 Identities=12% Similarity=-0.000 Sum_probs=34.2
Q ss_pred eecccCCCchhHHHHHHHHH----cCCcceEEEeecCCCCCCChhhhhcCCCCccceEE--eCCeee
Q 030456 3 KLFSYWRSSCSHRVRIGLNL----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV 63 (177)
Q Consensus 3 ~Ly~~~~s~~~~~v~~~L~~----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~~l 63 (177)
..|+.++|+.|++..-.+.. .+-.+....++.. ...++.+...-..+|++. .+|..+
T Consensus 57 v~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~----~~~~l~~~~~V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 57 IDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTE----AERELSARFRIRSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCC----CCHHHHHhcCCCccCEEEEEECCEEE
Confidence 35568899999976544443 2223455556554 244555555567899887 466644
No 223
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=35.78 E-value=34 Score=23.41 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=27.9
Q ss_pred CchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhh
Q 030456 10 SSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFL 45 (177)
Q Consensus 10 s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~ 45 (177)
-+.++++...|+..|++|+....+..+......+|.
T Consensus 11 ~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~ 46 (156)
T TIGR01162 11 LPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYA 46 (156)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHH
Confidence 478899999999999999999988775433344444
No 224
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=35.40 E-value=1e+02 Score=18.51 Aligned_cols=51 Identities=10% Similarity=0.083 Sum_probs=29.3
Q ss_pred eecccCCCchhHHHHHHHHH-----cCCcceEEEeecCCCCCCChhhhhcCCCCccceEE
Q 030456 3 KLFSYWRSSCSHRVRIGLNL-----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (177)
Q Consensus 3 ~Ly~~~~s~~~~~v~~~L~~-----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~ 57 (177)
..|+.++|+.|+...-.++. .+..+....++... .+...+...-..+|++.
T Consensus 21 v~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~----~~~~~~~~~i~~~Pt~~ 76 (101)
T cd02994 21 IEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ----EPGLSGRFFVTALPTIY 76 (101)
T ss_pred EEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC----CHhHHHHcCCcccCEEE
Confidence 34568899999876544432 23334555555432 23344444456789887
No 225
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=35.02 E-value=69 Score=23.35 Aligned_cols=21 Identities=10% Similarity=0.248 Sum_probs=16.9
Q ss_pred eeecccCCCchhHHHHHHHHH
Q 030456 2 LKLFSYWRSSCSHRVRIGLNL 22 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~ 22 (177)
+.+|..+.||||++..--+..
T Consensus 111 I~vFtDp~CpyCkkl~~~l~~ 131 (232)
T PRK10877 111 ITVFTDITCGYCHKLHEQMKD 131 (232)
T ss_pred EEEEECCCChHHHHHHHHHHH
Confidence 457788999999998877765
No 226
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=34.26 E-value=1.3e+02 Score=19.28 Aligned_cols=58 Identities=14% Similarity=-0.054 Sum_probs=35.9
Q ss_pred ecccCC--CchhHHHHHHHHHcCCcc----eEEEeecCCCCCCChhhhhcCCCCccceEE--eCCeeeee
Q 030456 4 LFSYWR--SSCSHRVRIGLNLKGLEY----EYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVVSD 65 (177)
Q Consensus 4 Ly~~~~--s~~~~~v~~~L~~~gi~~----~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~~l~e 65 (177)
+|+..+ ||-|+.+.-+|++.--.| ....++... .++......-..+|++. .+|..+..
T Consensus 33 ~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~----~~~la~~f~V~sIPTli~fkdGk~v~~ 98 (111)
T cd02965 33 LLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRAD----EQALAARFGVLRTPALLFFRDGRYVGV 98 (111)
T ss_pred EecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCC----CHHHHHHcCCCcCCEEEEEECCEEEEE
Confidence 445554 999999887776543333 333555442 34555556667799988 47766543
No 227
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=34.06 E-value=1.1e+02 Score=18.72 Aligned_cols=54 Identities=13% Similarity=0.030 Sum_probs=31.0
Q ss_pred ecccCCCchhHHHHHHHHHcC------C----cceEEEeecCCCCCCChhhhhcCCCCccceEE--eCCe
Q 030456 4 LFSYWRSSCSHRVRIGLNLKG------L----EYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDF 61 (177)
Q Consensus 4 Ly~~~~s~~~~~v~~~L~~~g------i----~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~ 61 (177)
.|+.++|+.|++..-.+...- . .+....++.. ...+..+...-..+|++. .+|.
T Consensus 24 ~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d----~~~~l~~~~~v~~~Ptl~~~~~g~ 89 (108)
T cd02996 24 NFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCD----KESDIADRYRINKYPTLKLFRNGM 89 (108)
T ss_pred EEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECC----CCHHHHHhCCCCcCCEEEEEeCCc
Confidence 456899999998765554211 1 2344445543 234454555556789887 3554
No 228
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=33.09 E-value=48 Score=22.52 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=21.6
Q ss_pred CCchhHHHHHHHHHcCCcceEEEeecCC
Q 030456 9 RSSCSHRVRIGLNLKGLEYEYKAVNLVK 36 (177)
Q Consensus 9 ~s~~~~~v~~~L~~~gi~~~~~~v~~~~ 36 (177)
.-+.+++++-.|++.|++|+.+..+..+
T Consensus 12 D~~~~~~a~~~L~~~gi~~~~~V~saHR 39 (150)
T PF00731_consen 12 DLPIAEEAAKTLEEFGIPYEVRVASAHR 39 (150)
T ss_dssp GHHHHHHHHHHHHHTT-EEEEEE--TTT
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEeccC
Confidence 3478999999999999999998887664
No 229
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=33.07 E-value=1.1e+02 Score=21.27 Aligned_cols=57 Identities=9% Similarity=-0.004 Sum_probs=32.8
Q ss_pred ecccCCCchhHHHHHHHH---HcCCcceEEEeecCCCCCCChhhhhcCCCCccceEE--eCCeeeee
Q 030456 4 LFSYWRSSCSHRVRIGLN---LKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVVSD 65 (177)
Q Consensus 4 Ly~~~~s~~~~~v~~~L~---~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~~l~e 65 (177)
.|+.++|+.|..+.-.|+ ..--.+....|+... . ......+-..+|++. .+|..+..
T Consensus 89 ~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~----~-~l~~~f~v~~vPTlllyk~G~~v~~ 150 (175)
T cd02987 89 HIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASA----T-GASDEFDTDALPALLVYKGGELIGN 150 (175)
T ss_pred EEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccc----h-hhHHhCCCCCCCEEEEEECCEEEEE
Confidence 345789999986554332 222234455555432 1 444455667899888 47766543
No 230
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=32.94 E-value=2.7e+02 Score=22.67 Aligned_cols=36 Identities=14% Similarity=-0.010 Sum_probs=20.2
Q ss_pred HHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHhc
Q 030456 67 FAILMYLEEKYPQPPLLPSDLKRKAINYQAANIVSS 102 (177)
Q Consensus 67 ~~I~~~l~~~~~~~~l~p~~~~~~~~~~~~~~~~~~ 102 (177)
...+++|.++|+-+-+....+..-...+.|+..+..
T Consensus 246 ~~~a~~Lee~~GiP~~~~~~p~G~~~t~~~l~~l~~ 281 (455)
T PRK14476 246 RKAAEALEARTGVPYLVFPSLTGLEAVDRFIATLAQ 281 (455)
T ss_pred HHHHHHHHHHhCCCeEecCCCcChHHHHHHHHHHHH
Confidence 478999999998543322222333344455555443
No 231
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=32.72 E-value=43 Score=20.56 Aligned_cols=51 Identities=18% Similarity=0.128 Sum_probs=27.0
Q ss_pred ecccCCCchhHHHHHHHHHcCCc---ceEEEeecCCCCCCChhhhhcCCCCccceEE
Q 030456 4 LFSYWRSSCSHRVRIGLNLKGLE---YEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (177)
Q Consensus 4 Ly~~~~s~~~~~v~~~L~~~gi~---~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~ 57 (177)
.|+.++|+.|++..-.+++..-. .....++.. ...+...+...-..+|++.
T Consensus 24 ~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~---~~~~~l~~~~~V~~~PT~~ 77 (100)
T cd02999 24 LFYASWCPFSASFRPHFNALSSMFPQIRHLAIEES---SIKPSLLSRYGVVGFPTIL 77 (100)
T ss_pred EEECCCCHHHHhHhHHHHHHHHHhccCceEEEECC---CCCHHHHHhcCCeecCEEE
Confidence 45688999998876555432111 223334422 1223333444456789777
No 232
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=32.41 E-value=1.1e+02 Score=17.94 Aligned_cols=52 Identities=29% Similarity=0.434 Sum_probs=31.8
Q ss_pred eeecccCCCchhHH----HHHHHHH-cCCcceEEEeecCCCCCCChhhhhcCCCCccceEE
Q 030456 2 LKLFSYWRSSCSHR----VRIGLNL-KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~----v~~~L~~-~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~ 57 (177)
++||....+|.+.+ ++-+|++ .+-+|+...+|... .++..+...---.|+|+
T Consensus 4 L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~----~P~lAe~~~ivAtPtLv 60 (72)
T cd02978 4 LRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLK----QPQLAEEDKIVATPTLV 60 (72)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEccc----CHhHHhhCCEEEechhh
Confidence 46776666676665 3444443 46789999999874 34444444444456665
No 233
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=32.31 E-value=47 Score=23.40 Aligned_cols=20 Identities=35% Similarity=0.597 Sum_probs=18.5
Q ss_pred CCeeeeeHHHHHHHHHhhCC
Q 030456 59 GDFVVSDSFAILMYLEEKYP 78 (177)
Q Consensus 59 ~~~~l~es~~I~~~l~~~~~ 78 (177)
.+.+++||..|-+|+.++|+
T Consensus 154 ad~lIaDs~~I~~y~~~~y~ 173 (185)
T PF09314_consen 154 ADRLIADSKGIQDYIKERYG 173 (185)
T ss_pred CCEEEEcCHHHHHHHHHHcC
Confidence 56889999999999999998
No 234
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=31.87 E-value=1.5e+02 Score=19.52 Aligned_cols=58 Identities=10% Similarity=0.000 Sum_probs=31.7
Q ss_pred ecccCCCchhHHHHHHHHH----cCCcceEEEeecCCCCCCChhhhhcCCCCccceEE--e-CCeee
Q 030456 4 LFSYWRSSCSHRVRIGLNL----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--D-GDFVV 63 (177)
Q Consensus 4 Ly~~~~s~~~~~v~~~L~~----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~-~~~~l 63 (177)
.|+..+|+.|++..-.+.. .+-.+....++.... ......+...-..+|+++ + +|.++
T Consensus 26 ~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~--~~~~~~~~~~V~~iPt~v~~~~~G~~v 90 (142)
T cd02950 26 EFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNP--KWLPEIDRYRVDGIPHFVFLDREGNEE 90 (142)
T ss_pred EEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCc--ccHHHHHHcCCCCCCEEEEECCCCCEE
Confidence 4557899999886655543 222244555555431 122333444456789777 3 45544
No 235
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=31.78 E-value=79 Score=19.27 Aligned_cols=53 Identities=9% Similarity=-0.082 Sum_probs=29.3
Q ss_pred eecccCCCchhHHHHHHHHHc----CCcceEEEeecCCCCCCChhhhhcCCCCccceEE
Q 030456 3 KLFSYWRSSCSHRVRIGLNLK----GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (177)
Q Consensus 3 ~Ly~~~~s~~~~~v~~~L~~~----gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~ 57 (177)
..|+.++|+.|+...-.++.. +-.+....++.... ...++.+...-..+|++.
T Consensus 23 v~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~--~~~~~~~~~~i~~~Pt~~ 79 (109)
T cd03002 23 VEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDED--KNKPLCGKYGVQGFPTLK 79 (109)
T ss_pred EEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCcc--ccHHHHHHcCCCcCCEEE
Confidence 456688999998765444322 11234444554321 134444444556789887
No 236
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=30.79 E-value=52 Score=23.98 Aligned_cols=57 Identities=14% Similarity=0.015 Sum_probs=35.7
Q ss_pred HHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeee--eeHHHHHHHHHh
Q 030456 19 GLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVV--SDSFAILMYLEE 75 (177)
Q Consensus 19 ~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l--~es~~I~~~l~~ 75 (177)
.++..|++++...+...+-....+-|.-.+..+-+|+-..++..+ .....|.+.|-+
T Consensus 196 ~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~gv~pV~~i~~~~~~~~~~~~~~~~l~~ 254 (256)
T cd00449 196 LAKELGIKVEERPISLDELYAADEVFLTGTAAEVTPVTEIDGRGIGDGKPGPVTRKLRE 254 (256)
T ss_pred HHHHcCCeEEEEecCHHHHhhCCEEEEccccceEEEEEEECCeecCCCCCCHHHHHHHH
Confidence 556789999888887654323333444334457889999877665 334566665544
No 237
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=30.75 E-value=1.2e+02 Score=17.85 Aligned_cols=54 Identities=15% Similarity=0.038 Sum_probs=31.1
Q ss_pred ecccCCCchhHHHHHHHHH----cCCcceEEEeecCCCCCCChhhhhcCCCCccceEE--eCCe
Q 030456 4 LFSYWRSSCSHRVRIGLNL----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDF 61 (177)
Q Consensus 4 Ly~~~~s~~~~~v~~~L~~----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~ 61 (177)
.++.++|+.|+...-.++. .+-......++.. ....+.+...-..+|++. .+|.
T Consensus 20 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~----~~~~~~~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 20 DFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVD----ENPDIAAKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred EEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECC----CCHHHHHHcCCCcCCEEEEEeCCc
Confidence 4567889999887655543 2222455555543 234444444456799877 3554
No 238
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=30.57 E-value=62 Score=19.27 Aligned_cols=52 Identities=13% Similarity=0.046 Sum_probs=29.2
Q ss_pred eeecccCCCchhHHHHHHHHH-----cCC-cceEEEeecCCCCCCChhhhhcCCCCccceEE
Q 030456 2 LKLFSYWRSSCSHRVRIGLNL-----KGL-EYEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~-----~gi-~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~ 57 (177)
+..|+.++|+.|+...-.++. .+- .+....++.. ....+.+...-..+|++.
T Consensus 17 ~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~----~~~~~~~~~~i~~~P~~~ 74 (102)
T TIGR01126 17 LVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDAT----AEKDLASRFGVSGFPTIK 74 (102)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEcc----chHHHHHhCCCCcCCEEE
Confidence 456778999999875444432 221 1333344432 234444444566799876
No 239
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=30.41 E-value=1.1e+02 Score=18.74 Aligned_cols=59 Identities=14% Similarity=0.051 Sum_probs=31.0
Q ss_pred ecccCCCchhHHHHHHHHHc---CCcceEEEeecCCCCCCChhhhhcCCCCccceEE--eCCeee
Q 030456 4 LFSYWRSSCSHRVRIGLNLK---GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV 63 (177)
Q Consensus 4 Ly~~~~s~~~~~v~~~L~~~---gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~~l 63 (177)
.|+.++|+.|++..=.++.. --......++..... ...++.+...-..+|+++ .+|..+
T Consensus 21 ~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~-~~~~l~~~~~V~~~Pt~~~~~~G~~v 84 (103)
T cd02985 21 EFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDEND-STMELCRREKIIEVPHFLFYKDGEKI 84 (103)
T ss_pred EEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCCh-HHHHHHHHcCCCcCCEEEEEeCCeEE
Confidence 34578999998765544431 112344555543210 112444444456689877 366543
No 240
>PTZ00102 disulphide isomerase; Provisional
Probab=30.37 E-value=2.9e+02 Score=22.21 Aligned_cols=72 Identities=11% Similarity=0.033 Sum_probs=41.8
Q ss_pred eecccCCCchhHHHHHHH-------HHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEE--eCCeee-----eeHHH
Q 030456 3 KLFSYWRSSCSHRVRIGL-------NLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV-----SDSFA 68 (177)
Q Consensus 3 ~Ly~~~~s~~~~~v~~~L-------~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~~l-----~es~~ 68 (177)
..|+.++|+.|++..=.+ ...+-++....|+... ..+..+...-..+|++. .+|..+ .....
T Consensus 54 v~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~----~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~ 129 (477)
T PTZ00102 54 VKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATE----EMELAQEFGVRGYPTIKFFNKGNPVNYSGGRTADG 129 (477)
T ss_pred EEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCC----CHHHHHhcCCCcccEEEEEECCceEEecCCCCHHH
Confidence 456689999998764222 2223345555665432 33444444445689877 344321 34567
Q ss_pred HHHHHHhhCC
Q 030456 69 ILMYLEEKYP 78 (177)
Q Consensus 69 I~~~l~~~~~ 78 (177)
|..|+.+..+
T Consensus 130 l~~~l~~~~~ 139 (477)
T PTZ00102 130 IVSWIKKLTG 139 (477)
T ss_pred HHHHHHHhhC
Confidence 8899988754
No 241
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=29.86 E-value=91 Score=19.29 Aligned_cols=52 Identities=8% Similarity=0.056 Sum_probs=29.1
Q ss_pred eecccCCCchhHHHHHHHHH-----cCCcceEEEeecCCCCCCChhhh-hcCCCCccceEE
Q 030456 3 KLFSYWRSSCSHRVRIGLNL-----KGLEYEYKAVNLVKGEQFSPDFL-KINPIGYVPALV 57 (177)
Q Consensus 3 ~Ly~~~~s~~~~~v~~~L~~-----~gi~~~~~~v~~~~~~~~~~~~~-~~~p~~~~P~L~ 57 (177)
..|+.++|+.|++..-.+.. ++-.+....++.... ...+. +...-..+|++.
T Consensus 26 v~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~---~~~~~~~~~~v~~~Pti~ 83 (109)
T cd02993 26 VVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE---QREFAKEELQLKSFPTIL 83 (109)
T ss_pred EEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc---chhhHHhhcCCCcCCEEE
Confidence 45668999999986554443 333355555554321 12222 224456789887
No 242
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=29.71 E-value=1.2e+02 Score=17.61 Aligned_cols=52 Identities=10% Similarity=-0.054 Sum_probs=31.5
Q ss_pred eeecccCCCchhHHHHHHHHH----c--CCcceEEEeecCCCCCCChhhhhcCCCCccceEE
Q 030456 2 LKLFSYWRSSCSHRVRIGLNL----K--GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~----~--gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~ 57 (177)
+.+|+.++|+.|+...-.+.. . +-.+....++... ...+.+...-..+|++.
T Consensus 19 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~~~~i~~~Pt~~ 76 (101)
T cd02961 19 LVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA----NNDLCSEYGVRGYPTIK 76 (101)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc----hHHHHHhCCCCCCCEEE
Confidence 345678889999997766644 1 2345555555432 34444444456789877
No 243
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=29.17 E-value=1.1e+02 Score=23.30 Aligned_cols=39 Identities=21% Similarity=0.189 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhccCCCccccCCchHHHHHHHHHHHHh
Q 030456 133 IGKGFAALEKLLKDYAGKYATGDEVFLICIWHRSFMQRS 171 (177)
Q Consensus 133 ~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~~~l~~~ 171 (177)
+.+.+..||.+-.+....--.|.++|+||++...=...+
T Consensus 74 L~~~~~~Le~ik~~~~~~~~~~~~vS~ADLivLaG~vAi 112 (297)
T cd08200 74 LAKVLAVLEGIQKEFNESQSGGKKVSLADLIVLGGCAAV 112 (297)
T ss_pred HHHHHHHHHHHHHHhcccccCCccccHHHHHHHHhHHHH
Confidence 556666666654431111123457999999766554444
No 244
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed
Probab=29.09 E-value=75 Score=23.51 Aligned_cols=57 Identities=18% Similarity=0.040 Sum_probs=36.1
Q ss_pred HHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHHhh
Q 030456 19 GLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEK 76 (177)
Q Consensus 19 ~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~~~ 76 (177)
.++..|++++...+...+-....+-|.-.+-.+-+||-..|+..+.. .++.+.|-+.
T Consensus 208 ~~~~~g~~v~e~~i~~~dL~~adevfltns~~gi~pV~~id~~~~~~-g~~~~~l~~~ 264 (268)
T PRK06092 208 LLAQSGYPVVEVDASLEELLQADEVFICNSLMPVWPVRAIGETSYSS-GTLTRYLQPL 264 (268)
T ss_pred HHHHcCCeEEEEECCHHHHhhCCEEEEeCCcceEEEEEEECCEEccc-hHHHHHHHHH
Confidence 45667899999888865433333444444445788999988776633 4565555443
No 245
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=28.78 E-value=86 Score=15.66 Aligned_cols=25 Identities=28% Similarity=0.226 Sum_probs=19.6
Q ss_pred CCccceEEeCCeeeeeHHHHHHHHH
Q 030456 50 IGYVPALVDGDFVVSDSFAILMYLE 74 (177)
Q Consensus 50 ~~~~P~L~~~~~~l~es~~I~~~l~ 74 (177)
.|.+|....++..+.....|.+|+.
T Consensus 24 ~g~i~~~~~g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 24 EGELPAYRVGRHYRIPREDVDEYLE 48 (49)
T ss_pred cCCCCeEEeCCeEEEeHHHHHHHHh
Confidence 4678887777888888888888875
No 246
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=28.35 E-value=1.4e+02 Score=17.80 Aligned_cols=51 Identities=10% Similarity=0.044 Sum_probs=28.4
Q ss_pred eecccCCCchhHHHHHHH-----HHcC--CcceEEEeecCCCCCCChhhhhcCCCCccceEE
Q 030456 3 KLFSYWRSSCSHRVRIGL-----NLKG--LEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (177)
Q Consensus 3 ~Ly~~~~s~~~~~v~~~L-----~~~g--i~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~ 57 (177)
..|+.++|+.|++..-.+ +..+ -.+....++... .....+...-..+|++.
T Consensus 21 v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~ 78 (102)
T cd03005 21 VKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ----HRELCSEFQVRGYPTLL 78 (102)
T ss_pred EEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC----ChhhHhhcCCCcCCEEE
Confidence 455688999998754333 2233 235555666432 23333334456789877
No 247
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=28.22 E-value=84 Score=22.22 Aligned_cols=33 Identities=18% Similarity=0.045 Sum_probs=23.0
Q ss_pred eeecccCCCchhHHH----HHHHHHcCCcceEEEeec
Q 030456 2 LKLFSYWRSSCSHRV----RIGLNLKGLEYEYKAVNL 34 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v----~~~L~~~gi~~~~~~v~~ 34 (177)
+.+|+...||||.-. +-++...+++.+.+++.+
T Consensus 3 Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L 39 (209)
T cd03021 3 IELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFL 39 (209)
T ss_pred eEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 568888999998754 444455677767666654
No 248
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.
Probab=27.22 E-value=40 Score=25.21 Aligned_cols=57 Identities=9% Similarity=-0.147 Sum_probs=34.8
Q ss_pred HHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeee----eeHHHHHHHHHh
Q 030456 19 GLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVV----SDSFAILMYLEE 75 (177)
Q Consensus 19 ~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l----~es~~I~~~l~~ 75 (177)
.++..|++++...+.+.+-....+-|.-.+..+-+|+-..++..+ .....|.+.|-+
T Consensus 211 ~~~~~Gi~v~e~~i~~~~l~~ade~f~~ns~~gi~pV~~i~~~~~~~~~~~~gp~~~~l~~ 271 (279)
T cd01557 211 LARDLGIKVEERPITRDELYEADEVFATGTAAVVTPVGEIDYRGKEPGEGEVGPVTKKLYD 271 (279)
T ss_pred HHHHcCCeEEEEeCCHHHHhhCCEEEEecceeEEEEEEEEccccccCCCCCCCHHHHHHHH
Confidence 567789999988887654323333444444457789999877654 233445444443
No 249
>PRK15371 effector protein YopJ; Provisional
Probab=26.41 E-value=1.9e+02 Score=22.07 Aligned_cols=42 Identities=10% Similarity=0.033 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHHHHHHHHHh
Q 030456 127 IWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLICIWHRSFMQRS 171 (177)
Q Consensus 127 ~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~~~l~~~ 171 (177)
+...+++...+..+|+.+++ +.|+- +.++..|+-+.+.+...
T Consensus 22 ~~~~~~L~~~i~~le~~~~~--G~~~~-~~~~~~Di~~lp~lv~~ 63 (287)
T PRK15371 22 EISNEELKNIITQLEDDIAD--GSWIH-KNYARTDLEVMPALVAQ 63 (287)
T ss_pred hhhHHHHHHHHHHHHHHHHc--CCCCC-chhHHhhHHhhHHHHHH
Confidence 35667799999999999998 77774 57999999998887654
No 250
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=26.37 E-value=1.6e+02 Score=17.88 Aligned_cols=51 Identities=8% Similarity=-0.072 Sum_probs=28.2
Q ss_pred eecccCCCchhHHHHHHHHH----c---CCcceEEEeecCCCCCCChhhhhcCCCCccceEE
Q 030456 3 KLFSYWRSSCSHRVRIGLNL----K---GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (177)
Q Consensus 3 ~Ly~~~~s~~~~~v~~~L~~----~---gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~ 57 (177)
..|+.++|+.|++..-.+.. . +..+....++... .+...+...-..+|++.
T Consensus 20 v~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~----~~~~~~~~~I~~~Pt~~ 77 (104)
T cd03000 20 VDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA----YSSIASEFGVRGYPTIK 77 (104)
T ss_pred EEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc----CHhHHhhcCCccccEEE
Confidence 34568899999975544432 1 3344444555432 23443344445789877
No 251
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=25.98 E-value=92 Score=20.25 Aligned_cols=54 Identities=19% Similarity=0.045 Sum_probs=27.3
Q ss_pred ecccCCCchhHHHHHHHHH-----cCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeC
Q 030456 4 LFSYWRSSCSHRVRIGLNL-----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDG 59 (177)
Q Consensus 4 Ly~~~~s~~~~~v~~~L~~-----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~ 59 (177)
+|...+||.|++-.-.+.+ +.-.++...+...+... ..++.+. .....|++.|.
T Consensus 35 f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~-~~~~~~~-~~~~~~~~~D~ 93 (146)
T PF08534_consen 35 FWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPP-VREFLKK-YGINFPVLSDP 93 (146)
T ss_dssp EESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHH-HHHHHHH-TTTTSEEEEET
T ss_pred EEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHH-HHHHHHh-hCCCceEEech
Confidence 4444489999875433332 24445555555443222 3344433 23356666664
No 252
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=25.84 E-value=34 Score=20.62 Aligned_cols=19 Identities=11% Similarity=-0.220 Sum_probs=12.5
Q ss_pred eecccCCCchhHHHHHHHH
Q 030456 3 KLFSYWRSSCSHRVRIGLN 21 (177)
Q Consensus 3 ~Ly~~~~s~~~~~v~~~L~ 21 (177)
..++..+|+.|.+..-.+.
T Consensus 24 l~f~~~~C~~C~~~~~~l~ 42 (116)
T cd02966 24 VNFWASWCPPCRAEMPELE 42 (116)
T ss_pred EEeecccChhHHHHhHHHH
Confidence 3456778999987544444
No 253
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=25.63 E-value=3.6e+02 Score=21.77 Aligned_cols=14 Identities=14% Similarity=0.150 Sum_probs=11.3
Q ss_pred HHHHHHHHhhCCCC
Q 030456 67 FAILMYLEEKYPQP 80 (177)
Q Consensus 67 ~~I~~~l~~~~~~~ 80 (177)
...+++|.++|+-+
T Consensus 246 ~~~a~~Lee~~giP 259 (432)
T TIGR01285 246 RRAASLLADRCGVP 259 (432)
T ss_pred HHHHHHHHHHHCCC
Confidence 36899999999854
No 254
>PRK13356 aminotransferase; Provisional
Probab=25.61 E-value=64 Score=24.20 Aligned_cols=56 Identities=14% Similarity=-0.057 Sum_probs=35.0
Q ss_pred HHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHHh
Q 030456 19 GLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEE 75 (177)
Q Consensus 19 ~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~~ 75 (177)
.++..|++++...+...+-....+-|.-.+..+-+||-..|+..+. ...|.+.|-+
T Consensus 221 ~a~~~gi~v~e~~i~~~eL~~adevfltns~~gi~PV~~id~~~~~-~g~~~~~l~~ 276 (286)
T PRK13356 221 LLREDGVTVVETTLTYEDFLEADEVFSTGNYSKVVPVTRFDDRSLQ-PGPVTRRARE 276 (286)
T ss_pred HHHHcCCeEEEEecCHHHHHhcCceEEecChheEEEEEEECCEEec-CChHHHHHHH
Confidence 5677899999988886542233344444444577899998877663 2344444433
No 255
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=25.61 E-value=1e+02 Score=19.36 Aligned_cols=52 Identities=10% Similarity=-0.044 Sum_probs=26.1
Q ss_pred ecccCCCchhHHHHHHHHHcCCc-------ceEEEeecCCCCCCChhhhhcCCCCccceEE
Q 030456 4 LFSYWRSSCSHRVRIGLNLKGLE-------YEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (177)
Q Consensus 4 Ly~~~~s~~~~~v~~~L~~~gi~-------~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~ 57 (177)
.|+.++|+.|....-.++...-. +....++-. .....++.+...-..+|++.
T Consensus 25 ~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~--~~~~~~~~~~~~i~~~Pt~~ 83 (114)
T cd02992 25 EFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCA--DEENVALCRDFGVTGYPTLR 83 (114)
T ss_pred EEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEecc--chhhHHHHHhCCCCCCCEEE
Confidence 45688999998765554432111 222233321 11223444444456788877
No 256
>PF15471 TMEM171: Transmembrane protein family 171
Probab=25.48 E-value=1.1e+02 Score=23.02 Aligned_cols=45 Identities=9% Similarity=0.040 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHhcc----CCCccccCCchHHHHHHHHHHHHhh
Q 030456 128 WAKTHIGKGFAALEKLLKDY----AGKYATGDEVFLICIWHRSFMQRST 172 (177)
Q Consensus 128 ~~~~~~~~~l~~le~~L~~~----~~~~l~G~~~t~aDi~l~~~l~~~~ 172 (177)
.+.++-+..|..-++++.++ .+.|+||+.--+|-+.++++|..-.
T Consensus 73 ViLARSrArL~lr~~q~~g~Q~d~d~~f~CgesrQFaQ~LIFGFLFLTS 121 (319)
T PF15471_consen 73 VILARSRARLQLRERQLQGEQVDPDTAFFCGESRQFAQFLIFGFLFLTS 121 (319)
T ss_pred heehhhHHHHHHHHHHhhcccCCCCceEEecCCcchhHHHHHHHHHHhh
Confidence 33344455566666666552 4679999999999999999987543
No 257
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=25.44 E-value=3.8e+02 Score=22.64 Aligned_cols=52 Identities=6% Similarity=-0.023 Sum_probs=29.8
Q ss_pred cccCCCchhHHHHHH-H------HHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEE
Q 030456 5 FSYWRSSCSHRVRIG-L------NLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (177)
Q Consensus 5 y~~~~s~~~~~v~~~-L------~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~ 57 (177)
++.++|+.|+...-. + ++.+ .+....+|..+.+....++.+......+|++.
T Consensus 481 F~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~ 539 (571)
T PRK00293 481 LYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLGLPTIL 539 (571)
T ss_pred EECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCCCCEEE
Confidence 458999999875432 1 1111 35666677654322234454444555689887
No 258
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=25.36 E-value=1.3e+02 Score=16.57 Aligned_cols=28 Identities=14% Similarity=0.231 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhccCCCccccCCc-hHHHHHH
Q 030456 135 KGFAALEKLLKDYAGKYATGDEV-FLICIWH 164 (177)
Q Consensus 135 ~~l~~le~~L~~~~~~~l~G~~~-t~aDi~l 164 (177)
...+.+.+.+.. +.|-.|+.+ |.++++-
T Consensus 4 ~i~~~l~~~I~~--g~~~~g~~lps~~~la~ 32 (64)
T PF00392_consen 4 QIYDQLRQAILS--GRLPPGDRLPSERELAE 32 (64)
T ss_dssp HHHHHHHHHHHT--TSS-TTSBE--HHHHHH
T ss_pred HHHHHHHHHHHc--CCCCCCCEeCCHHHHHH
Confidence 344556666666 888899999 9888763
No 259
>PRK06606 branched-chain amino acid aminotransferase; Validated
Probab=24.94 E-value=65 Score=24.45 Aligned_cols=46 Identities=9% Similarity=-0.108 Sum_probs=31.0
Q ss_pred HHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeee
Q 030456 19 GLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVS 64 (177)
Q Consensus 19 ~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~ 64 (177)
.+...|++++...+.+.+-....+-|.-.+..+-+|+-..|+..+.
T Consensus 228 ~~~~~g~~v~e~~i~~~eL~~AdevfltnS~~gi~PV~~id~~~~~ 273 (306)
T PRK06606 228 LAKDLGIEVIERRITRDELYIADEVFFTGTAAEVTPIREVDGRQIG 273 (306)
T ss_pred HHHHcCCcEEEEeCCHHHHhhCCEEEEcCCcceEEEEEEECcEECC
Confidence 5677899999988876543233344444445578899998876663
No 260
>PF12728 HTH_17: Helix-turn-helix domain
Probab=24.89 E-value=1.1e+02 Score=15.78 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=22.5
Q ss_pred CCCccceEEeCCeeeeeHHHHHHHHHhh
Q 030456 49 PIGYVPALVDGDFVVSDSFAILMYLEEK 76 (177)
Q Consensus 49 p~~~~P~L~~~~~~l~es~~I~~~l~~~ 76 (177)
..+.+|....++.....-..|.+|+.++
T Consensus 23 ~~g~i~~~~~g~~~~~~~~~l~~~~~~~ 50 (51)
T PF12728_consen 23 RQGKIPPFKIGRKWRIPKSDLDRWLERR 50 (51)
T ss_pred HcCCCCeEEeCCEEEEeHHHHHHHHHhC
Confidence 3567888888888889999999998764
No 261
>COG2975 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.77 E-value=1.4e+02 Score=16.76 Aligned_cols=34 Identities=26% Similarity=0.123 Sum_probs=21.7
Q ss_pred eeeHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHH
Q 030456 63 VSDSFAILMYLEEKYPQPPLLPSDLKRKAINYQAANI 99 (177)
Q Consensus 63 l~es~~I~~~l~~~~~~~~l~p~~~~~~~~~~~~~~~ 99 (177)
.+|+..|++-|..+||+ .-|.. ......++|+..
T Consensus 3 WtD~~~Iae~Lyd~~pd--vDPkt-vrFtdlh~wi~e 36 (64)
T COG2975 3 WTDSQEIAEALYDAYPD--VDPKT-VRFTDLHQWICE 36 (64)
T ss_pred cchHHHHHHHHHhcCCC--CCcce-eehhhHHHHHHh
Confidence 57899999999999985 34443 223334444443
No 262
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=24.25 E-value=1.4e+02 Score=18.96 Aligned_cols=51 Identities=14% Similarity=0.062 Sum_probs=29.1
Q ss_pred eecccCCCchhHHHHHHHHHcCCc----ceEEEeecCCCCCCChhhh-hcCCCCccceEE
Q 030456 3 KLFSYWRSSCSHRVRIGLNLKGLE----YEYKAVNLVKGEQFSPDFL-KINPIGYVPALV 57 (177)
Q Consensus 3 ~Ly~~~~s~~~~~v~~~L~~~gi~----~~~~~v~~~~~~~~~~~~~-~~~p~~~~P~L~ 57 (177)
..|+.+||+.|+...-.+++..-. .....|+... ..... +...-..+|+|.
T Consensus 34 V~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~----~~~l~~~~~~I~~~PTl~ 89 (113)
T cd03006 34 VMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWW----PQGKCRKQKHFFYFPVIH 89 (113)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCC----ChHHHHHhcCCcccCEEE
Confidence 356689999999877666654322 3344555432 22332 222335689887
No 263
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=24.21 E-value=1.3e+02 Score=18.85 Aligned_cols=25 Identities=12% Similarity=-0.099 Sum_probs=18.9
Q ss_pred ccCCCchhHHHHHHHHHcCCcceEE
Q 030456 6 SYWRSSCSHRVRIGLNLKGLEYEYK 30 (177)
Q Consensus 6 ~~~~s~~~~~v~~~L~~~gi~~~~~ 30 (177)
-....|...-++.+.+++|||++..
T Consensus 62 r~~~~pd~~Hl~~LA~ekgVpVe~~ 86 (100)
T PF15608_consen 62 RDPDDPDLAHLLLLAEEKGVPVEVY 86 (100)
T ss_pred CCCCCccHHHHHHHHHHcCCcEEEe
Confidence 3455677778888888899888765
No 264
>TIGR03412 iscX_yfhJ FeS assembly protein IscX. Members of this protein family are YfhJ, a protein of the ISC system for iron-sulfur cluster assembly. Other genes in the system include iscSUA, hscBA, and fdx.
Probab=24.09 E-value=82 Score=17.92 Aligned_cols=17 Identities=35% Similarity=0.389 Sum_probs=15.1
Q ss_pred eeeHHHHHHHHHhhCCC
Q 030456 63 VSDSFAILMYLEEKYPQ 79 (177)
Q Consensus 63 l~es~~I~~~l~~~~~~ 79 (177)
.+||..|+.-|..+||+
T Consensus 2 W~D~~eIA~~L~e~~pd 18 (63)
T TIGR03412 2 WTDSQEIAIALAEAHPD 18 (63)
T ss_pred ccCHHHHHHHHHHHCCC
Confidence 46899999999999996
No 265
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=24.05 E-value=45 Score=20.05 Aligned_cols=51 Identities=10% Similarity=-0.034 Sum_probs=27.8
Q ss_pred eeecccCCCchhHHHHHHHHHc-----C-CcceEEEeecCCCCCCChhhhhcCCCCccceEE
Q 030456 2 LKLFSYWRSSCSHRVRIGLNLK-----G-LEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L~~~-----g-i~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~ 57 (177)
+.+|+.++|+.|+...-.+... + ..+....++... . +.........+|++.
T Consensus 22 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~----~-~~~~~~~~~~~Pt~~ 78 (104)
T cd02995 22 LVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATA----N-DVPSEFVVDGFPTIL 78 (104)
T ss_pred EEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcc----h-hhhhhccCCCCCEEE
Confidence 3466789999999865554432 2 234445555432 1 122111226789877
No 266
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=23.87 E-value=96 Score=21.24 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=21.6
Q ss_pred eeecccCCCchhHHHHHHH----HHcCCcceEEEeec
Q 030456 2 LKLFSYWRSSCSHRVRIGL----NLKGLEYEYKAVNL 34 (177)
Q Consensus 2 ~~Ly~~~~s~~~~~v~~~L----~~~gi~~~~~~v~~ 34 (177)
+++|....||||.-..-.| ...++.++.+++.+
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~~l 37 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPILL 37 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeeeeH
Confidence 4678889999998754333 34566666665543
No 267
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=23.73 E-value=1.8e+02 Score=25.33 Aligned_cols=38 Identities=11% Similarity=-0.046 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhccCCCccccCCchHHHHHHHHHHHHhhcCC
Q 030456 132 HIGKGFAALEKLLKDYAGKYATGDEVFLICIWHRSFMQRSTGST 175 (177)
Q Consensus 132 ~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~~~l~~~~~~~ 175 (177)
.+.+.++.|+.+=++ +|.++|+||+.+..--..+...|
T Consensus 121 ~Ldka~~lL~pIk~k------yp~~VS~ADLivLAG~vAVE~~G 158 (716)
T TIGR00198 121 NLDKARRLLWPIKKK------YGNKLSWADLIILAGTVAYESMG 158 (716)
T ss_pred hHHHHHHHHHHHHHH------CCCceeHHHHHHHHHHHHHHHhC
Confidence 567777777776444 56789999998877666665554
No 268
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=23.49 E-value=1e+02 Score=18.34 Aligned_cols=52 Identities=12% Similarity=-0.033 Sum_probs=29.7
Q ss_pred eecccCCCchhHHHHHHHHH----cC--CcceEEEeecCCCCCCChhhhhcCCCCccceEE
Q 030456 3 KLFSYWRSSCSHRVRIGLNL----KG--LEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (177)
Q Consensus 3 ~Ly~~~~s~~~~~v~~~L~~----~g--i~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~ 57 (177)
..|+.++|+.|+...-.+.. .. -.+....++... ..+.+.+...-..+|++.
T Consensus 23 v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~---~~~~~~~~~~i~~~P~~~ 80 (105)
T cd02998 23 VEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADE---ANKDLAKKYGVSGFPTLK 80 (105)
T ss_pred EEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCC---cchhhHHhCCCCCcCEEE
Confidence 45668999999865444432 11 235555565432 034444444556789887
No 269
>PF12062 HSNSD: heparan sulfate-N-deacetylase; InterPro: IPR021930 This family of proteins is are heparan sulphate N-deacetylase enzymes. This protein is found in eukaryotes. This enzyme is often found associated with PF00685 from PFAM. ; GO: 0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity, 0016787 hydrolase activity
Probab=23.45 E-value=1.1e+02 Score=24.94 Aligned_cols=50 Identities=16% Similarity=0.280 Sum_probs=35.6
Q ss_pred eecccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCC-----eeeeeHH
Q 030456 3 KLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGD-----FVVSDSF 67 (177)
Q Consensus 3 ~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~-----~~l~es~ 67 (177)
.++-+..|..++.+..+|+...++|+...++ ..|.+|+|.+++ .++.|+.
T Consensus 64 VFvES~YS~lGq~Iv~ILes~Rf~y~~ei~~---------------~kg~lP~LT~~~kGRy~lII~ENl 118 (487)
T PF12062_consen 64 VFVESQYSQLGQDIVAILESNRFKYKVEIAS---------------GKGDLPVLTDNDKGRYSLIIFENL 118 (487)
T ss_pred EEEeeccchhhHHHHHHHHhceeeEEEEEcc---------------CCCCCCccccCCCCcEEEEEehhH
Confidence 3444567899999999999999999877554 134678888643 3556654
No 270
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=23.39 E-value=3.5e+02 Score=21.28 Aligned_cols=65 Identities=18% Similarity=0.236 Sum_probs=43.2
Q ss_pred ccCCCchhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHHhhCCCCCC
Q 030456 6 SYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQPPL 82 (177)
Q Consensus 6 ~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~~~~~~~~l 82 (177)
|...|+|.+..--.+...| |..+..+.- +.... ..+.|.+-.+|.. .|-..+++++-+.++..++
T Consensus 86 G~s~s~y~r~L~~~~~~rg--~~~Vv~~~R-gcs~~--------~n~~p~~yh~G~t-~D~~~~l~~l~~~~~~r~~ 150 (345)
T COG0429 86 GSSNSPYARGLMRALSRRG--WLVVVFHFR-GCSGE--------ANTSPRLYHSGET-EDIRFFLDWLKARFPPRPL 150 (345)
T ss_pred CCCcCHHHHHHHHHHHhcC--CeEEEEecc-cccCC--------cccCcceecccch-hHHHHHHHHHHHhCCCCce
Confidence 4455677777777777788 777766632 22221 2357888877765 7777788888887776554
No 271
>PF12437 GSIII_N: Glutamine synthetase type III N terminal ; InterPro: IPR022147 This domain family is found in bacteria and eukaryotes, and is approximately 160 amino acids in length. The family is found in association with PF00120 from PFAM. This family is the N-terminal region of glutamine synthetase type III which is one of the enzymes responsible for generation of glutamine through conversion glutamate to glutamine by the incorporation of ammonia (NH3). ; GO: 0004356 glutamate-ammonia ligase activity; PDB: 3O6X_D.
Probab=22.67 E-value=2.2e+02 Score=19.61 Aligned_cols=37 Identities=11% Similarity=0.114 Sum_probs=24.0
Q ss_pred HHHHHHHHHhccCCCccccCCchHHHHHHHHHHHHhhcCCCC
Q 030456 136 GFAALEKLLKDYAGKYATGDEVFLICIWHRSFMQRSTGSTLT 177 (177)
Q Consensus 136 ~l~~le~~L~~~~~~~l~G~~~t~aDi~l~~~l~~~~~~~~~ 177 (177)
....+.+.+.+ +..| .+.+||.....+-.|....|-|
T Consensus 24 vy~~~~~~i~~--g~~l---d~~~Ad~VA~amk~WA~~~GAT 60 (164)
T PF12437_consen 24 VYKKLKKTIEK--GEPL---DPEIADVVAAAMKEWAIEKGAT 60 (164)
T ss_dssp HHHHHHHHHTT----------HHHHHHHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHc--CCCC---CHHHHHHHHHHHHHHHHHcCCe
Confidence 45556666666 5666 4889999999999999888754
No 272
>PF01063 Aminotran_4: Aminotransferase class IV; InterPro: IPR001544 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-IV, currently consists of proteins of about 270 to 415 amino-acid residues that share a few regions of sequence similarity. Surprisingly, the best conserved region does not include the lysine residue to which the pyridoxal-phosphate group is known to be attached, in ilvE, but is located some 40 residues at the C terminus side of the pyridoxal-phosphate-lysine. The D-amino acid transferases (D-AAT), which are among the members of this entry, are required by bacteria to catalyse the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity [, ]. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1EKV_A 2HGX_A 1EKP_A 1KTA_B 1KT8_B 2A1H_B 2HDK_A 2HGW_B 1EKF_B 2HG8_A ....
Probab=22.40 E-value=50 Score=23.57 Aligned_cols=60 Identities=18% Similarity=0.048 Sum_probs=38.6
Q ss_pred HHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHHhh
Q 030456 16 VRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEK 76 (177)
Q Consensus 16 v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~~~ 76 (177)
+.-.++..|++++...+...+-....+-|.-....+-.||-..++..+. ...|.+-|-+.
T Consensus 171 ll~~~~~~g~~v~e~~i~~~~L~~ade~fl~ns~~gi~pV~~i~~~~~~-~~p~~~~L~~~ 230 (231)
T PF01063_consen 171 LLELAKELGIPVEERPITLDDLQQADEVFLTNSLRGIRPVKSIDGRSFG-PGPITRRLQEA 230 (231)
T ss_dssp HHHHHHHTTSEEEEE-BBHHHHHTHSEEEEEETTTEEEEEEEETTEEST-THHHHHHHHHH
T ss_pred HHHHHHhCCCCcEEEEeCHHHhhhhhheEEecchhhEEEEEEECCEECC-CCHHHHHHHHh
Confidence 3345556899998888876542222233333344678899999988877 77777776554
No 273
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=22.19 E-value=1.9e+02 Score=23.33 Aligned_cols=41 Identities=7% Similarity=-0.050 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHhccCCCccccCCchHHHHHHHHHHHHhhcCC
Q 030456 129 AKTHIGKGFAALEKLLKDYAGKYATGDEVFLICIWHRSFMQRSTGST 175 (177)
Q Consensus 129 ~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~~~l~~~~~~~ 175 (177)
....+...++.||.+-.+ .+.++|+||++...=...+...|
T Consensus 108 ~N~gL~~a~~~L~pik~k------~~~~iS~ADL~~LaG~~AiE~~G 148 (409)
T cd00649 108 DNVNLDKARRLLWPIKQK------YGNKISWADLMILAGNVALESMG 148 (409)
T ss_pred hhhhHHHHHHHHHHHHHH------cCCCccHHHHHHHHHHHHHHHcC
Confidence 334677777777776544 23579999997776655555444
No 274
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=22.12 E-value=3.3e+02 Score=22.65 Aligned_cols=71 Identities=13% Similarity=0.093 Sum_probs=44.6
Q ss_pred ecccCCCchhHH-------HHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEE--eCCee------eeeHHH
Q 030456 4 LFSYWRSSCSHR-------VRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFV------VSDSFA 68 (177)
Q Consensus 4 Ly~~~~s~~~~~-------v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~~------l~es~~ 68 (177)
-|+-+||..|.+ +.-.|.+.|-+.....|+-.. ..++-..---.-.|+|. .+|.. -.+.-.
T Consensus 48 eFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~----~~~~~~~y~v~gyPTlkiFrnG~~~~~Y~G~r~adg 123 (493)
T KOG0190|consen 48 EFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATE----ESDLASKYEVRGYPTLKIFRNGRSAQDYNGPREADG 123 (493)
T ss_pred EEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecch----hhhhHhhhcCCCCCeEEEEecCCcceeccCcccHHH
Confidence 345888888866 344566666688888887442 12222222334578887 34442 356778
Q ss_pred HHHHHHhhCC
Q 030456 69 ILMYLEEKYP 78 (177)
Q Consensus 69 I~~~l~~~~~ 78 (177)
|+.|+-++.+
T Consensus 124 Iv~wl~kq~g 133 (493)
T KOG0190|consen 124 IVKWLKKQSG 133 (493)
T ss_pred HHHHHHhccC
Confidence 9999999876
No 275
>PRK07544 branched-chain amino acid aminotransferase; Validated
Probab=22.07 E-value=79 Score=23.79 Aligned_cols=45 Identities=18% Similarity=0.150 Sum_probs=30.7
Q ss_pred HHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeee
Q 030456 19 GLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVV 63 (177)
Q Consensus 19 ~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l 63 (177)
.++..|++++...+.+.+-....+-|.-.+..+-+||...++..+
T Consensus 225 ~a~~~g~~v~e~~i~~~eL~~adevfltnS~~gi~PV~~i~~~~~ 269 (292)
T PRK07544 225 LAKRRGIEVVERHIMPEELAGFSECFLTGTAAEVTPVSEIGEYRF 269 (292)
T ss_pred HHHHcCCeEEEEecCHHHHhhcCceeecCccceEEEEEEEeeEEe
Confidence 556789999999888654333334444445568889999887665
No 276
>PRK07650 4-amino-4-deoxychorismate lyase; Provisional
Probab=22.00 E-value=93 Score=23.26 Aligned_cols=45 Identities=13% Similarity=-0.088 Sum_probs=30.7
Q ss_pred HHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeee
Q 030456 19 GLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVV 63 (177)
Q Consensus 19 ~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l 63 (177)
.++..|++++...+.+.+-....+-|.-.+..+-+|+-..++..+
T Consensus 212 ~~~~~g~~v~e~~i~~~dL~~adeifl~ns~~gv~pV~~i~~~~~ 256 (283)
T PRK07650 212 VLEELGIEVKEGFYTKEELLSADEVFVTNSIQEIVPLTRIEERDF 256 (283)
T ss_pred HHHHcCCeEEEEecCHHHHhhCCEeeeecCcccEEEEEEECCEEe
Confidence 567789999988887654323334444444468899999887765
No 277
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=21.97 E-value=2.4e+02 Score=18.41 Aligned_cols=41 Identities=12% Similarity=0.045 Sum_probs=27.5
Q ss_pred eeHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHhccccchhH
Q 030456 64 SDSFAILMYLEEKYPQPPLLPSDLKRKAINYQAANIVSSSIQPLQN 109 (177)
Q Consensus 64 ~es~~I~~~l~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (177)
.+...|++||.++-.+ .++..+..+..++.++.......+.
T Consensus 34 ~~~~ei~d~L~kRL~~-----~~~hVK~K~Lrilk~l~~~G~~~f~ 74 (122)
T cd03572 34 GSCQELLEYLLKRLKR-----SSPHVKLKVLKIIKHLCEKGNSDFK 74 (122)
T ss_pred HHHHHHHHHHHHHhcC-----CCCcchHHHHHHHHHHHhhCCHHHH
Confidence 4566899999998543 4466667777777776665544443
No 278
>smart00422 HTH_MERR helix_turn_helix, mercury resistance.
Probab=21.89 E-value=1e+02 Score=17.08 Aligned_cols=22 Identities=9% Similarity=-0.099 Sum_probs=18.9
Q ss_pred CchHHHHHHHHHHHHhhcCCCC
Q 030456 156 EVFLICIWHRSFMQRSTGSTLT 177 (177)
Q Consensus 156 ~~t~aDi~l~~~l~~~~~~~~~ 177 (177)
.+|..|+..+-.+..++..|+|
T Consensus 38 ~y~~~dl~~l~~i~~lr~~g~~ 59 (70)
T smart00422 38 LYSDEDLERLRFIKRLKELGFS 59 (70)
T ss_pred ecCHHHHHHHHHHHHHHHcCCC
Confidence 5889999999999988888875
No 279
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=21.80 E-value=1.3e+02 Score=22.30 Aligned_cols=31 Identities=13% Similarity=0.021 Sum_probs=21.5
Q ss_pred eecccCCCchhHH----HHHHHHHcCCcceEEEee
Q 030456 3 KLFSYWRSSCSHR----VRIGLNLKGLEYEYKAVN 33 (177)
Q Consensus 3 ~Ly~~~~s~~~~~----v~~~L~~~gi~~~~~~v~ 33 (177)
.+++...||+|++ ++.+-+..|++.-.+.+|
T Consensus 148 ~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~D 182 (248)
T PRK13703 148 MFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVD 182 (248)
T ss_pred EEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecC
Confidence 3566788999998 666667788865544443
No 280
>TIGR01121 D_amino_aminoT D-amino acid aminotransferase. Specificity is broad for various D-amino acids, and differs among members of the family; the family is designated equivalog, but with this caveat attached.
Probab=21.59 E-value=85 Score=23.39 Aligned_cols=57 Identities=9% Similarity=0.003 Sum_probs=35.1
Q ss_pred HHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeee--HHHHHHHHHh
Q 030456 19 GLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSD--SFAILMYLEE 75 (177)
Q Consensus 19 ~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~e--s~~I~~~l~~ 75 (177)
.++..|++++...+.+.+-....+-|.-.+..+-+|+-..|+..+.. ...+.+.|.+
T Consensus 211 ~a~~~g~~v~e~~i~~~el~~ade~fltns~~gi~PV~~id~~~~~~~~~g~~~~~L~~ 269 (276)
T TIGR01121 211 CAEENGIPVKEEPFTKEELLNADEVFVSSTTAEITPVIEIDGQQIGDGKPGPWTRQLQK 269 (276)
T ss_pred HHHHCCCeEEEEeCCHHHHhcCCEEEEecCcccEEEEEEECCEECCCCCCCHHHHHHHH
Confidence 56778999998888865433334444444445778999987765532 2344444443
No 281
>PF14811 TPD: Protein of unknown function TPD sequence-motif
Probab=21.34 E-value=55 Score=21.92 Aligned_cols=49 Identities=20% Similarity=0.316 Sum_probs=28.2
Q ss_pred HHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHHHHHHHHhhC
Q 030456 16 VRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKY 77 (177)
Q Consensus 16 v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~I~~~l~~~~ 77 (177)
+.-.|..+||+|.....--..+-.++|+++= .+|+.+.+- +++|++.+.
T Consensus 39 L~~~L~~~gi~f~tE~~lR~~g~~kTPDi~l-----~~Pi~i~g~--------~V~WIESKa 87 (139)
T PF14811_consen 39 LEKYLRKLGIPFLTEDDLRARGYDKTPDIKL-----EVPIAINGH--------VVNWIESKA 87 (139)
T ss_pred HHHHHHHCCCccccHHHHHHcCCCCCCCEEe-----cCCceECCe--------EEeeeehhh
Confidence 5567788999987554332223334444422 246666443 667777764
No 282
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=21.20 E-value=39 Score=21.24 Aligned_cols=31 Identities=16% Similarity=0.079 Sum_probs=16.1
Q ss_pred ecccCCCchhHHHHHHHHHcCCcceEEEeec
Q 030456 4 LFSYWRSSCSHRVRIGLNLKGLEYEYKAVNL 34 (177)
Q Consensus 4 Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~ 34 (177)
.|+..+|+.|+...-.|....-.++...+..
T Consensus 26 ~F~~~~C~~C~~~~~~l~~~~~~~~~i~i~~ 56 (123)
T cd03011 26 YFWATWCPVCRFTSPTVNQLAADYPVVSVAL 56 (123)
T ss_pred EEECCcChhhhhhChHHHHHHhhCCEEEEEc
Confidence 4457889999876433332111244444443
No 283
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=21.00 E-value=4.3e+02 Score=20.96 Aligned_cols=72 Identities=14% Similarity=0.092 Sum_probs=41.5
Q ss_pred eecccCCCchhHHHHHHHH-------HcCCcceEEEeecCCCCCCChhhhhcCCCCccceEE--eCCee-------eeeH
Q 030456 3 KLFSYWRSSCSHRVRIGLN-------LKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFV-------VSDS 66 (177)
Q Consensus 3 ~Ly~~~~s~~~~~v~~~L~-------~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~--~~~~~-------l~es 66 (177)
.+|+.++|+.|.+..-.+. ..+-.+....|+-.. ..+..+...-..+|++. .+|.. -.+.
T Consensus 23 v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~----~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~ 98 (462)
T TIGR01130 23 VEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATE----EKDLAQKYGVSGYPTLKIFRNGEDSVSDYNGPRDA 98 (462)
T ss_pred EEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCC----cHHHHHhCCCccccEEEEEeCCccceeEecCCCCH
Confidence 4566899999988643332 223235555555432 33444444455688777 33432 1356
Q ss_pred HHHHHHHHhhCC
Q 030456 67 FAILMYLEEKYP 78 (177)
Q Consensus 67 ~~I~~~l~~~~~ 78 (177)
..|..++.+..+
T Consensus 99 ~~l~~~i~~~~~ 110 (462)
T TIGR01130 99 DGIVKYMKKQSG 110 (462)
T ss_pred HHHHHHHHHhcC
Confidence 678888888764
No 284
>PF12972 NAGLU_C: Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain; InterPro: IPR024732 Alpha-N-acetylglucosaminidase is a lysosomal enzyme required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase (NAGLU) gene can lead to Mucopolysaccharidosis type IIIB (MPS IIIB, or Sanfilippo syndrome type B) characterised by neurological dysfunction but relatively mild somatic manifestations []. The structure shows that the enzyme is composed of three domains. This C-terminal domain has an all alpha helical fold [].; PDB: 2VC9_A 2VCC_A 2VCB_A 2VCA_A 4A4A_A.
Probab=20.90 E-value=3e+02 Score=20.63 Aligned_cols=31 Identities=16% Similarity=0.091 Sum_probs=23.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhccCCCcccc
Q 030456 123 DERDIWAKTHIGKGFAALEKLLKDYAGKYATG 154 (177)
Q Consensus 123 ~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G 154 (177)
....+...+++.+.+..+|.+|+.+ ..|++|
T Consensus 122 ~~~~~~~~~~~l~ll~dlD~lL~t~-~~f~Lg 152 (267)
T PF12972_consen 122 IEAFKALSARFLELLDDLDRLLATN-PEFLLG 152 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT--GGGBHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCcC-CCCCHH
Confidence 4566777788889999999999873 566766
No 285
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=20.86 E-value=1.4e+02 Score=22.27 Aligned_cols=31 Identities=16% Similarity=0.082 Sum_probs=19.9
Q ss_pred eecccCCCchhHHH----HHHHHHcCCcceEEEee
Q 030456 3 KLFSYWRSSCSHRV----RIGLNLKGLEYEYKAVN 33 (177)
Q Consensus 3 ~Ly~~~~s~~~~~v----~~~L~~~gi~~~~~~v~ 33 (177)
.+++...||+|++- +.+-...|++...+.+|
T Consensus 155 ~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~D 189 (256)
T TIGR02739 155 FFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVD 189 (256)
T ss_pred EEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecC
Confidence 35667889999984 44556677654444443
No 286
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=20.63 E-value=1.2e+02 Score=20.86 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=24.8
Q ss_pred chhHHHHHHHHHcCCcceEEEeecCCCCCCChhhh
Q 030456 11 SCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFL 45 (177)
Q Consensus 11 ~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~ 45 (177)
+....+.-+|++.||||+.+.++-.+...+-.+|.
T Consensus 16 ~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya 50 (162)
T COG0041 16 DTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYA 50 (162)
T ss_pred HHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHH
Confidence 45566788999999999999998765333333333
No 287
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family.
Probab=20.57 E-value=90 Score=23.55 Aligned_cols=46 Identities=9% Similarity=-0.052 Sum_probs=31.0
Q ss_pred HHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeee
Q 030456 19 GLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVS 64 (177)
Q Consensus 19 ~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~ 64 (177)
.+...|++++...+.+.+-....+-|.-.+..+-+|+-..|+..+.
T Consensus 220 la~~~g~~v~e~~i~~~eL~~adevfltns~~gv~PV~~id~~~~~ 265 (298)
T TIGR01122 220 LAKELGIEVVEQPISREELYTADEAFFTGTAAEITPIREVDGRKIG 265 (298)
T ss_pred HHHHcCCcEEEEeCCHHHHhhCCEEEEcCCcceEEEEEEECCEECC
Confidence 5677899999998886543233344444455678899998876653
No 288
>cd04763 HTH_MlrA-like Helix-Turn-Helix DNA binding domain of MlrA-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MlrA (merR-like regulator A) and related proteins, N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. Its close homolog, CarA from Myxococcus xanthus, is involved in activation of the carotenoid biosynthesis genes by light. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. Many MlrA-like proteins in this group appear to lack the long dimerization helix seen
Probab=20.34 E-value=1.2e+02 Score=16.94 Aligned_cols=22 Identities=9% Similarity=-0.244 Sum_probs=18.4
Q ss_pred CchHHHHHHHHHHHHhhcCCCC
Q 030456 156 EVFLICIWHRSFMQRSTGSTLT 177 (177)
Q Consensus 156 ~~t~aDi~l~~~l~~~~~~~~~ 177 (177)
.+|..|+..+-.+..++..|+|
T Consensus 38 ~yt~~di~~l~~i~~l~~~g~~ 59 (68)
T cd04763 38 LFNDADIDRILEIKRWIDNGVQ 59 (68)
T ss_pred ccCHHHHHHHHHHHHHHHcCCC
Confidence 5888899888888888888875
No 289
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=20.03 E-value=1.5e+02 Score=23.23 Aligned_cols=137 Identities=10% Similarity=-0.018 Sum_probs=62.8
Q ss_pred chhHHHHHHHHHcCCcceEEEeecCCCCCCChhhhhcCCCCccceEEeCCeeeeeHHH-HHHHHHhhCCCCCCCCCCHHH
Q 030456 11 SCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFA-ILMYLEEKYPQPPLLPSDLKR 89 (177)
Q Consensus 11 ~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~~P~L~~~~~~l~es~~-I~~~l~~~~~~~~l~p~~~~~ 89 (177)
....-++-+|+..|+++....-.- ..-+++.+. +...+=+... .+... .+++|.++|+.+-+....+..
T Consensus 158 ~d~~el~~lL~~~Gi~v~~~~~~~----~t~~e~~~~-~~A~lniv~~-----~~~~~~~a~~L~e~~giP~~~~~~p~G 227 (398)
T PF00148_consen 158 GDLEELKRLLEELGIEVNAVFPGG----TTLEEIRKA-PEAALNIVLC-----PEGGPYAAEWLEERFGIPYLYFPSPYG 227 (398)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEETT----BCHHHHHHG-GGSSEEEESS-----CCHHHHHHHHHHHHHT-EEEEEC-SBS
T ss_pred ccHHHHHHHHHHCCCceEEEeCCC----CCHHHHHhC-CcCcEEEEec-----cchhhHHHHHHHHHhCCCeeecccccc
Confidence 455567777888888655443221 123344332 2222222211 12344 899999999854433122333
Q ss_pred HHHHHHHHHHHhccccchhHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCchHHHHHHHHHHH
Q 030456 90 KAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLICIWHRSFMQ 169 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aDi~l~~~l~ 169 (177)
....+.|+..+...+.... .++..+..+++....+......|.+ .+.++....+. .+...+
T Consensus 228 ~~~t~~~l~~i~~~lg~~~-------------~~~~i~~~~~~~~~~l~~~~~~l~g--~~v~i~~~~~~----~~~l~~ 288 (398)
T PF00148_consen 228 IEGTDAWLRAIAEALGKPI-------------AEAEIAEERERAEDALADYRERLGG--KRVAIYGDPDR----ALGLAR 288 (398)
T ss_dssp HHHHHHHHHHHHHHHTHHH-------------HHHHHHHHHHHHHHHHHHHHHHHTT---EEEEESSHHH----HHHHHH
T ss_pred HHHHHHHHHHHHHHhCCch-------------hhHHHHHHHHHHHHHHHhhHHhhcC--ceEEEEcCchh----HHHHHH
Confidence 4455566666554333100 0112222334444455555566665 56655322322 234445
Q ss_pred HhhcCCC
Q 030456 170 RSTGSTL 176 (177)
Q Consensus 170 ~~~~~~~ 176 (177)
.+..+|+
T Consensus 289 ~L~elG~ 295 (398)
T PF00148_consen 289 FLEELGM 295 (398)
T ss_dssp HHHHTT-
T ss_pred HHHHcCC
Confidence 5545554
Done!