Query 030457
Match_columns 177
No_of_seqs 122 out of 619
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 22:49:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030457.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030457hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbo_4 Ribosomal protein L34; 100.0 9.1E-44 3.1E-48 285.0 -0.4 146 1-165 1-149 (152)
2 3r8s_2 50S ribosomal protein L 99.7 2.8E-19 9.7E-24 120.1 2.4 41 112-152 5-45 (46)
3 2ftc_Q L34MT, MRP-L34, 39S rib 99.7 7.4E-19 2.5E-23 114.1 2.8 38 112-149 1-38 (38)
4 3v2d_7 50S ribosomal protein L 99.7 5.7E-19 1.9E-23 119.9 1.8 40 112-151 5-44 (49)
5 3kxt_A Chromatin protein CREN7 8.1 1.4E+02 0.0049 20.4 1.3 21 144-167 27-47 (56)
6 3kb4_A ALR8543 protein; alpha- 7.2 1.5E+02 0.0051 24.1 1.2 19 125-143 47-66 (225)
7 2pq7_A Predicted HD superfamil 6.2 2.4E+02 0.0083 21.2 1.9 18 126-143 187-204 (220)
8 3b57_A LIN1889 protein; Q92AN1 5.7 1.9E+02 0.0064 21.9 1.0 18 126-143 169-186 (209)
9 2qgs_A Protein Se1688; alpha-h 5.5 3.4E+02 0.012 20.8 2.4 17 127-143 183-199 (225)
10 2pjq_A Uncharacterized protein 5.3 3.4E+02 0.012 21.0 2.3 17 127-143 188-204 (231)
No 1
>3bbo_4 Ribosomal protein L34; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=9.1e-44 Score=284.98 Aligned_cols=146 Identities=57% Similarity=0.810 Sum_probs=36.9
Q ss_pred CCccc--ccccCCCCCcCCCcCCCcccCCcceeeeecc-cccceeecccCCCCCCCCCceeecccccccccccccccccc
Q 030457 1 MASLS--ITTSIPPPWLTSKSTHHSRRIPSASLILRTG-RSSVSVNVAGNNSSPSRPGLLHCSFVSSSLCSSAFHSAFSG 77 (177)
Q Consensus 1 ~~s~~--~~~~~~~~w~~~~s~~~~~~~p~asl~~~s~-r~~~~~~~~~~~~~~sr~~~L~~sFlss~~sssf~~ssfsg 77 (177)
||+++ .++++..+ +..+|+++|+|++| |.....|++.+ +.+++++|||+||+|+.+ ++++|+|
T Consensus 1 ma~~~~~~~~~~~~~---------~~~~p~~s~s~~~~~r~~~~~~~~~~--~~a~s~~l~~sf~ss~~s---~~ssf~G 66 (152)
T 3bbo_4 1 MATLSLLSTGVGAAI---------TNRTPSASLTFITGSRTTNKRVSFNG--GSARSGSLHCSFLAPSSS---LSSNFSG 66 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Cccccccccccccee---------eccCCCcccccccccccccccccccc--ccccCcceeeeecccccc---CCCcccc
Confidence 45444 35666555 67789999999999 76666666666 889999999999999966 7899999
Q ss_pred cccccccccccccccCCCceeEEEecCcccccccCCCcccchhhhhhhhhhcCChhHHHHHHHHHHcCCceEeccccccc
Q 030457 78 LSLGLDFNSNAGVRKEKRQGLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAILKRRRAKGREVVFDSLLGIF 157 (177)
Q Consensus 78 ~SlgLdl~~~~~v~~~r~~~~~VraGkRtl~~Tkr~~Sr~kRkRkHGFraRM~Tk~GRkIL~RRR~KGRk~Ls~sl~~~~ 157 (177)
+++++||++++++..++++++||+|||+++++|+|+|+++||||+||||+||+|++||+||+|||+||||+|++ .
T Consensus 67 ~sl~~~l~~~i~~~~~r~~gl~Vr~Gkr~~~~T~r~pS~~kRkR~HGFraRM~Tk~GRkVL~rRRaKGRk~Ls~-----s 141 (152)
T 3bbo_4 67 LSLGLDLTSNTGVSTDRCRRFVVRAGKAALCLTKRSRSRKSLARTHGFRLRMSTTSGRALLKRRRAKGRKILCT-----K 141 (152)
T ss_dssp -------------------------------------CTTHHHHTSCHHHHHHSGGGTTTTHHHHTTTCSCSCC------
T ss_pred cccccccccceeeccCCCcceEEEccCccccccCCCCccceeehhhcHHHHhcChhhHHHHHHHHHhCCcEEee-----c
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999999 8
Q ss_pred cCCCCCCc
Q 030457 158 QRPSSGNK 165 (177)
Q Consensus 158 ~~~~sgk~ 165 (177)
.++++||+
T Consensus 142 ~~~~sGk~ 149 (152)
T 3bbo_4 142 TNPSSGKR 149 (152)
T ss_dssp --------
T ss_pred cCCCCCCc
Confidence 99999994
No 2
>3r8s_2 50S ribosomal protein L34; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1vs8_2 1vs6_2 2aw4_2 2awb_2 1vt2_2 2i2v_2 2j28_2 2i2t_2* 2qao_2* 2qba_2* 2qbc_2* 2qbe_2 2qbg_2 2qbi_2* 2qbk_2* 2qov_2 2qox_2 2qoz_2* 2qp1_2* 2rdo_2 ...
Probab=99.75 E-value=2.8e-19 Score=120.05 Aligned_cols=41 Identities=49% Similarity=0.649 Sum_probs=38.8
Q ss_pred CCCcccchhhhhhhhhhcCChhHHHHHHHHHHcCCceEecc
Q 030457 112 RNRSRKSLARTHGFRRRMRTTSGRAILKRRRAKGREVVFDS 152 (177)
Q Consensus 112 r~~Sr~kRkRkHGFraRM~Tk~GRkIL~RRR~KGRk~Ls~s 152 (177)
|||++++|+|+|||++||+|++||+||++||+|||++|++|
T Consensus 5 yQPs~~kRkr~hGFraRm~T~~GRkvL~rRR~KGRk~Ls~s 45 (46)
T 3r8s_2 5 FQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTVS 45 (46)
T ss_dssp CCCCHHHHHHHHSHHHHHTSHHHHHHHHHHHHHTCSCSSCC
T ss_pred CCCCceeechhhcHHHHccCcchhHHHHHHHHcCCceeccc
Confidence 47888899999999999999999999999999999999984
No 3
>2ftc_Q L34MT, MRP-L34, 39S ribosomal protein L34, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=99.73 E-value=7.4e-19 Score=114.07 Aligned_cols=38 Identities=32% Similarity=0.504 Sum_probs=36.5
Q ss_pred CCCcccchhhhhhhhhhcCChhHHHHHHHHHHcCCceE
Q 030457 112 RNRSRKSLARTHGFRRRMRTTSGRAILKRRRAKGREVV 149 (177)
Q Consensus 112 r~~Sr~kRkRkHGFraRM~Tk~GRkIL~RRR~KGRk~L 149 (177)
+||++++|+|+|||++||+|++||+||++||+|||++|
T Consensus 1 yqPs~~kRkr~hGFraRm~T~~GRkvl~rRR~KGR~~L 38 (38)
T 2ftc_Q 1 YQPSNIKRKNKHGWVRRLSTPAGVQVILRRMLKGRKSL 38 (38)
T ss_pred CCCccccchhhhcHHHHccChhhHHHHHHHHHcCcccC
Confidence 58999999999999999999999999999999999986
No 4
>3v2d_7 50S ribosomal protein L34; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_Z 2hgj_6 2hgq_6 2hgu_6 1vsa_Z 2j03_7 2jl6_7 2jl8_7 2v47_7 2v49_7 2wdi_7 2wdj_7 2wdl_7 2wdn_7 2wh2_7 2wh4_7 2wrj_7 2wrl_7 2wro_7 2wrr_7 ...
Probab=99.73 E-value=5.7e-19 Score=119.94 Aligned_cols=40 Identities=53% Similarity=0.788 Sum_probs=38.4
Q ss_pred CCCcccchhhhhhhhhhcCChhHHHHHHHHHHcCCceEec
Q 030457 112 RNRSRKSLARTHGFRRRMRTTSGRAILKRRRAKGREVVFD 151 (177)
Q Consensus 112 r~~Sr~kRkRkHGFraRM~Tk~GRkIL~RRR~KGRk~Ls~ 151 (177)
|||++++|+|+|||++||+|++||+||++||+|||++|++
T Consensus 5 yQPs~~kRkr~hGFraRm~T~~GRkVL~rRR~KGRk~Ls~ 44 (49)
T 3v2d_7 5 WQPNRRKRAKTHGFRARMRTPGGRKVLKRRRQKGRWRLTP 44 (49)
T ss_dssp CCCCHHHHHHHHSHHHHHHSHHHHHHHHHHHHHTCSCSSC
T ss_pred CCCCceeechhhcHHHHccCcchhHHHHHHHHcCCcEeee
Confidence 4788889999999999999999999999999999999999
No 5
>3kxt_A Chromatin protein CREN7; protein-DNA complex, crenarchaea chromatin protein, minor-GR binding, methylation; 1.60A {Sulfolobus solfataricus} PDB: 2jtm_A 3lwh_A* 3lwi_A*
Probab=8.07 E-value=1.4e+02 Score=20.44 Aligned_cols=21 Identities=38% Similarity=0.699 Sum_probs=14.4
Q ss_pred cCCceEeccccccccCCCCCCcce
Q 030457 144 KGREVVFDSLLGIFQRPSSGNKYV 167 (177)
Q Consensus 144 KGRk~Ls~sl~~~~~~~~sgk~~~ 167 (177)
|||+-.-. |++..|.+||++-
T Consensus 27 ~GrkGVkI---gLFk~P~tGk~fR 47 (56)
T 3kxt_A 27 KGRKGVKI---GLFKDPETGKYFR 47 (56)
T ss_dssp TTSCCEEE---EEEECTTTCCEEE
T ss_pred CCCCceEE---EEEECCCCCcEee
Confidence 45554444 6789999998763
No 6
>3kb4_A ALR8543 protein; alpha-beta protein., structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium, NESG, function; HET: GR0; 2.41A {Nostoc SP}
Probab=7.18 E-value=1.5e+02 Score=24.11 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=15.0
Q ss_pred hhhhcC-ChhHHHHHHHHHH
Q 030457 125 FRRRMR-TTSGRAILKRRRA 143 (177)
Q Consensus 125 FraRM~-Tk~GRkIL~RRR~ 143 (177)
.+.+|. ++.||+||+.|-.
T Consensus 47 ~~~~m~~~P~Gr~iL~eRp~ 66 (225)
T 3kb4_A 47 VVAVLSLTPQGKQAFEDRPM 66 (225)
T ss_dssp HHHHHTTSHHHHHHHHHCCC
T ss_pred HHHHHhcCHHHHHHHHhCCC
Confidence 356775 9999999998755
No 7
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=6.20 E-value=2.4e+02 Score=21.21 Aligned_cols=18 Identities=17% Similarity=0.265 Sum_probs=15.0
Q ss_pred hhhcCChhHHHHHHHHHH
Q 030457 126 RRRMRTTSGRAILKRRRA 143 (177)
Q Consensus 126 raRM~Tk~GRkIL~RRR~ 143 (177)
-..|.|+.||++...|-.
T Consensus 187 ~~~~~T~~g~~~a~~r~~ 204 (220)
T 2pq7_A 187 PETFWTETARKMAEDRYS 204 (220)
T ss_dssp CTTCSSHHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHH
Confidence 456899999999988854
No 8
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=5.72 E-value=1.9e+02 Score=21.94 Aligned_cols=18 Identities=17% Similarity=0.462 Sum_probs=15.0
Q ss_pred hhhcCChhHHHHHHHHHH
Q 030457 126 RRRMRTTSGRAILKRRRA 143 (177)
Q Consensus 126 raRM~Tk~GRkIL~RRR~ 143 (177)
..+|.|+.||++...|-.
T Consensus 169 ~~~~~T~~gr~~a~~r~~ 186 (209)
T 3b57_A 169 KDQLNTETAKTIAKEKQK 186 (209)
T ss_dssp HHHCCCHHHHHTTHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 357999999999988854
No 9
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=5.49 E-value=3.4e+02 Score=20.82 Aligned_cols=17 Identities=18% Similarity=0.346 Sum_probs=14.5
Q ss_pred hhcCChhHHHHHHHHHH
Q 030457 127 RRMRTTSGRAILKRRRA 143 (177)
Q Consensus 127 aRM~Tk~GRkIL~RRR~ 143 (177)
..|.|+.||++...|-+
T Consensus 183 ~~~~T~~gr~~ae~r~~ 199 (225)
T 2qgs_A 183 DLMHTPTAKKLAEERHQ 199 (225)
T ss_dssp GGCCSHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 46999999999988865
No 10
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=5.32 E-value=3.4e+02 Score=21.00 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=14.7
Q ss_pred hhcCChhHHHHHHHHHH
Q 030457 127 RRMRTTSGRAILKRRRA 143 (177)
Q Consensus 127 aRM~Tk~GRkIL~RRR~ 143 (177)
..|.|+.||++...|-+
T Consensus 188 ~~~~T~~gr~~ae~r~~ 204 (231)
T 2pjq_A 188 ALMNTDTAKALAAHRTA 204 (231)
T ss_dssp HHCCSHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 47999999999998865
Done!