Query 030457
Match_columns 177
No_of_seqs 122 out of 619
Neff 2.3
Searched_HMMs 13730
Date Mon Mar 25 22:50:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030457.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030457hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zaka2 g.41.2.1 (A:128-158) M 29.1 12 0.00085 21.7 1.5 19 156-174 2-20 (31)
2 d1ewqa1 a.113.1.1 (A:267-541) 11.5 52 0.0038 22.9 1.9 21 123-143 7-27 (275)
3 d1wb9a1 a.113.1.1 (A:270-566) 9.2 70 0.0051 22.3 1.9 22 122-143 22-43 (297)
4 d3bx1c1 b.42.4.1 (C:1-181) Amy 8.8 37 0.0027 24.9 0.2 24 154-177 151-174 (181)
5 d1ve1a1 c.79.1.1 (A:1-302) O-a 8.2 66 0.0048 23.3 1.5 24 140-170 276-299 (302)
6 d1hd6a_ a.10.1.1 (A:) ER-22 {E 5.9 54 0.0039 19.3 -0.1 11 4-14 26-36 (37)
7 d2qgsa1 a.211.1.1 (A:1-216) Un 5.5 1.5E+02 0.011 21.3 2.2 17 127-143 183-199 (216)
8 d2dy1a5 d.58.11.1 (A:570-665) 5.5 1.2E+02 0.009 19.0 1.5 11 135-145 86-96 (96)
9 d2d8za2 g.39.1.3 (A:33-64) Fou 5.2 85 0.0062 17.9 0.5 15 160-174 8-22 (32)
10 d2pq7a1 a.211.1.1 (A:1-217) Pr 5.2 1.6E+02 0.012 20.9 2.2 15 128-142 188-202 (217)
No 1
>d1zaka2 g.41.2.1 (A:128-158) Microbial and mitochondrial ADK, insert "zinc finger" domain {Maize (Zea mays) [TaxId: 4577]}
Probab=29.10 E-value=12 Score=21.68 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=16.2
Q ss_pred cccCCCCCCcceecCCCCC
Q 030457 156 IFQRPSSGNKYVSTEKPPF 174 (177)
Q Consensus 156 ~~~~~~sgk~~~~~~~~~~ 174 (177)
-..+|.+|+.|-.+-+||-
T Consensus 2 RR~DP~TG~iYH~~f~ppp 20 (31)
T d1zaka2 2 RRLDPVTGKIYHLKYSPPE 20 (31)
T ss_dssp EEECTTTCCEEESSSSCCC
T ss_pred CcCCCCCCcEeEEecCCCC
Confidence 3579999999999998884
No 2
>d1ewqa1 a.113.1.1 (A:267-541) DNA repair protein MutS, domain III {Thermus aquaticus [TaxId: 271]}
Probab=11.53 E-value=52 Score=22.93 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=17.6
Q ss_pred hhhhhhcCChhHHHHHHHHHH
Q 030457 123 HGFRRRMRTTSGRAILKRRRA 143 (177)
Q Consensus 123 HGFraRM~Tk~GRkIL~RRR~ 143 (177)
.+++.|-.|+-|++.|+++..
T Consensus 7 ~~~ln~t~T~~GkRlLr~wl~ 27 (275)
T d1ewqa1 7 FSVLDETRTAPGRRLLQSWLR 27 (275)
T ss_dssp HHHHCCCSSHHHHHHHHHHHH
T ss_pred HHHHcCCCChHHHHHHHHHHh
Confidence 478889999999999998654
No 3
>d1wb9a1 a.113.1.1 (A:270-566) DNA repair protein MutS, domain III {Escherichia coli [TaxId: 562]}
Probab=9.19 E-value=70 Score=22.31 Aligned_cols=22 Identities=23% Similarity=0.122 Sum_probs=19.2
Q ss_pred hhhhhhhcCChhHHHHHHHHHH
Q 030457 122 THGFRRRMRTTSGRAILKRRRA 143 (177)
Q Consensus 122 kHGFraRM~Tk~GRkIL~RRR~ 143 (177)
=+|++.+-.|+-|++.|+++..
T Consensus 22 L~~~ln~c~T~~GkRlLr~wLl 43 (297)
T d1wb9a1 22 LASVLDCTVTPMGSRMLKRWLH 43 (297)
T ss_dssp HHHHHCCCSSHHHHHHHHHHHH
T ss_pred HHHHHcCCCCcHHHHHHHHHHh
Confidence 4789999999999999998754
No 4
>d3bx1c1 b.42.4.1 (C:1-181) Amylase/subtilisin inhibitor {Barley (Hordeum vulgare), seed [TaxId: 4513]}
Probab=8.84 E-value=37 Score=24.85 Aligned_cols=24 Identities=21% Similarity=0.470 Sum_probs=20.5
Q ss_pred cccccCCCCCCcceecCCCCCCCC
Q 030457 154 LGIFQRPSSGNKYVSTEKPPFQWM 177 (177)
Q Consensus 154 ~~~~~~~~sgk~~~~~~~~~~~~~ 177 (177)
+||..|.+-|+..+-++.|||..|
T Consensus 151 vGi~~d~~g~rrl~~~~~~p~~V~ 174 (181)
T d3bx1c1 151 LGVFRDLKGGAWFLGATEPYHVVV 174 (181)
T ss_dssp CEEECCTTCCCCEEESEESBCCEE
T ss_pred cCeeEcCCCCEEEEeCCCCceEEE
Confidence 699999999999999999998653
No 5
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]}
Probab=8.21 E-value=66 Score=23.34 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=16.8
Q ss_pred HHHHcCCceEeccccccccCCCCCCcceecC
Q 030457 140 RRRAKGREVVFDSLLGIFQRPSSGNKYVSTE 170 (177)
Q Consensus 140 RRR~KGRk~Ls~sl~~~~~~~~sgk~~~~~~ 170 (177)
++..+|++.+++ .+.+|.||+||+
T Consensus 276 ~~~~~~~~Vv~i-------~~g~G~kY~st~ 299 (302)
T d1ve1a1 276 RELGPGKRVACI-------SPDGGWKYLSTP 299 (302)
T ss_dssp HHHCTTCEEEEE-------ECBBSGGGTTST
T ss_pred HHhCccCeEEEE-------ECCCCchhcChh
Confidence 344567766665 367899999985
No 6
>d1hd6a_ a.10.1.1 (A:) ER-22 {Euplotes raikovi [TaxId: 5938]}
Probab=5.88 E-value=54 Score=19.33 Aligned_cols=11 Identities=55% Similarity=1.371 Sum_probs=9.4
Q ss_pred ccccccCCCCC
Q 030457 4 LSITTSIPPPW 14 (177)
Q Consensus 4 ~~~~~~~~~~w 14 (177)
|++.+|-+|||
T Consensus 26 l~v~gsc~pp~ 36 (37)
T d1hd6a_ 26 LAVKGSCPPPW 36 (37)
T ss_dssp HHHHHHSCSSC
T ss_pred eeeeccCCCCC
Confidence 67788999998
No 7
>d2qgsa1 a.211.1.1 (A:1-216) Uncharacterized protein SE1688 {Staphylococcus epidermidis [TaxId: 1282]}
Probab=5.49 E-value=1.5e+02 Score=21.27 Aligned_cols=17 Identities=18% Similarity=0.346 Sum_probs=14.2
Q ss_pred hhcCChhHHHHHHHHHH
Q 030457 127 RRMRTTSGRAILKRRRA 143 (177)
Q Consensus 127 aRM~Tk~GRkIL~RRR~ 143 (177)
.+|.|+.||++-..|..
T Consensus 183 ~~m~T~~gk~~A~~R~~ 199 (216)
T d2qgsa1 183 DLMHTPTAKKLAEERHQ 199 (216)
T ss_dssp GGCCSHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHH
Confidence 47999999999888753
No 8
>d2dy1a5 d.58.11.1 (A:570-665) Elongation factor G (EF-G) {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Probab=5.46 E-value=1.2e+02 Score=19.00 Aligned_cols=11 Identities=27% Similarity=0.616 Sum_probs=8.7
Q ss_pred HHHHHHHHHcC
Q 030457 135 RAILKRRRAKG 145 (177)
Q Consensus 135 RkIL~RRR~KG 145 (177)
.+||+.|++||
T Consensus 86 ~~vi~~r~~kG 96 (96)
T d2dy1a5 86 QRIVQERAQEG 96 (96)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHhcCC
Confidence 35888888887
No 9
>d2d8za2 g.39.1.3 (A:33-64) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.20 E-value=85 Score=17.91 Aligned_cols=15 Identities=13% Similarity=0.461 Sum_probs=12.0
Q ss_pred CCCCCcceecCCCCC
Q 030457 160 PSSGNKYVSTEKPPF 174 (177)
Q Consensus 160 ~~sgk~~~~~~~~~~ 174 (177)
+-.|.+|++-+.-||
T Consensus 8 ~L~GQry~~rd~~Py 22 (32)
T d2d8za2 8 QLSGQRFTARDDFAY 22 (32)
T ss_dssp BCTTSCCEESSSSEE
T ss_pred cccCceeeecCCCee
Confidence 457999999887775
No 10
>d2pq7a1 a.211.1.1 (A:1-217) Predicted hydrolase mes0020 {Uncultured thermotogales bacterium [TaxId: 221214]}
Probab=5.17 E-value=1.6e+02 Score=20.91 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=12.2
Q ss_pred hcCChhHHHHHHHHH
Q 030457 128 RMRTTSGRAILKRRR 142 (177)
Q Consensus 128 RM~Tk~GRkIL~RRR 142 (177)
+|.|+.||++=++|.
T Consensus 188 ~m~T~~gk~lA~~R~ 202 (217)
T d2pq7a1 188 TFWTETARKMAEDRY 202 (217)
T ss_dssp TCSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHH
Confidence 799999999766554
Done!