AmiGO: BLAST Results


BLAST match view associations BLAST with AT1G06790 AT1G06790 AT1G06790	protein from Arabidopsis thaliana	3.7e-55
BLAST match view associations BLAST with polr3h polr3h polr3h polymerase (RNA) III (DNA directed) polypeptide H	gene_product from Danio rerio	1.1e-20
BLAST match view associations BLAST with Polr3h Polr3h Polr3h polymerase (RNA) III (DNA directed) polypeptide H	protein from Mus musculus	3.5e-20
BLAST match view associations BLAST with Polr3h Polr3h Polr3h polymerase (RNA) III (DNA directed) polypeptide H	gene from Rattus norvegicus	3.5e-20
BLAST match view associations BLAST with POLR3H POLR3H POLR3H DNA-directed RNA polymerase III subunit RPC8	protein from Bos taurus	5.7e-20
BLAST match view associations BLAST with POLR3H POLR3H POLR3H DNA-directed RNA polymerase III subunit RPC8	protein from Bos taurus	5.7e-20
BLAST match view associations BLAST with POLR3H POLR3H POLR3H DNA-directed RNA polymerase III subunit RPC8	protein from Homo sapiens	1.5e-19
BLAST match view associations BLAST with POLR3H POLR3H POLR3H Uncharacterized protein	protein from Sus scrofa	1.5e-19
BLAST match view associations BLAST with POLR3H POLR3H POLR3H Uncharacterized protein	protein from Canis lupus familiaris	2.5e-19
BLAST match view associations BLAST with rpc-25 rpc-25 rpc-25	gene from Caenorhabditis elegans	5.1e-19
BLAST match view associations BLAST with RPC25 RPC25 RPC25 RNA polymerase III subunit C25	gene from Saccharomyces cerevisiae	1.7e-18
BLAST match view associations BLAST with POLR3H POLR3H POLR3H Uncharacterized protein	protein from Gallus gallus	1.7e-18
BLAST match view associations BLAST with CG7339 CG7339 CG7339	protein from Drosophila melanogaster	2.1e-18
BLAST match view associations BLAST with rpc25-2 rpc25-2 rpc25-2 RNA polymerase III subunit	gene from Dictyostelium discoideum	2.7e-18
BLAST match view associations BLAST with rpc25-1 rpc25-1 rpc25-1 RNA polymerase III subunit	gene from Dictyostelium discoideum	2.7e-18
BLAST match view associations BLAST with orf19.443 orf19.443 orf19.443	gene_product from Candida albicans	1.1e-16
BLAST match view associations BLAST with Rpb7 Rpb7 Rpb7	protein from Drosophila melanogaster	4.5e-07
BLAST match view associations BLAST with POLR3H POLR3H POLR3H DNA-directed RNA polymerase III subunit RPC8	protein from Homo sapiens	3.4e-06
BLAST match view associations BLAST with RPB7 RPB7 RPB7 RNA polymerase II subunit B16	gene from Saccharomyces cerevisiae	7.4e-06
BLAST match view associations BLAST with POLR2G POLR2G POLR2G DNA-directed RNA polymerase II subunit RPB7	protein from Bos taurus	1.1e-05
BLAST match view associations BLAST with POLR2G POLR2G POLR2G DNA-directed RNA polymerase II subunit RPB7	protein from Homo sapiens	1.1e-05
BLAST match view associations BLAST with POLR2G POLR2G POLR2G Uncharacterized protein	protein from Sus scrofa	1.1e-05
BLAST match view associations BLAST with Polr2g Polr2g Polr2g polymerase (RNA) II (DNA directed) polypeptide G	protein from Mus musculus	1.1e-05
BLAST match view associations BLAST with Polr2g Polr2g Polr2g polymerase (RNA) II (DNA directed) polypeptide G	gene from Rattus norvegicus	1.1e-05
BLAST match view associations BLAST with polr2gl polr2gl polr2gl polymerase (RNA) II (DNA directed) polypeptide G-like	gene_product from Danio rerio	1.1e-05
BLAST match view associations BLAST with RPB7 RPB7 RPB7	gene_product from Candida albicans	0.00044
BLAST match view associations BLAST with RPB7 RPB7 RPB7 Likely RNA Pol II core complex subunit	protein from Candida albicans SC5314	0.00044
BLAST match view associations BLAST with rpb-7 rpb-7 rpb-7	gene from Caenorhabditis elegans	0.00099
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030458
        (177 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2033077 - symbol:AT1G06790 species:3702 "Arabi...   569  3.7e-55   1
ZFIN|ZDB-GENE-040718-179 - symbol:polr3h "polymerase (RNA...   199  1.1e-20   2
MGI|MGI:1926179 - symbol:Polr3h "polymerase (RNA) III (DN...   239  3.5e-20   1
RGD|1305889 - symbol:Polr3h "polymerase (RNA) III (DNA di...   239  3.5e-20   1
UNIPROTKB|F1ML03 - symbol:POLR3H "DNA-directed RNA polyme...   237  5.7e-20   1
UNIPROTKB|Q2T9X1 - symbol:POLR3H "DNA-directed RNA polyme...   237  5.7e-20   1
UNIPROTKB|Q9Y535 - symbol:POLR3H "DNA-directed RNA polyme...   233  1.5e-19   1
UNIPROTKB|F1SRD6 - symbol:POLR3H "Uncharacterized protein...   233  1.5e-19   1
UNIPROTKB|E2RRG9 - symbol:POLR3H "Uncharacterized protein...   231  2.5e-19   1
WB|WBGene00014111 - symbol:rpc-25 species:6239 "Caenorhab...   228  5.1e-19   1
SGD|S000001627 - symbol:RPC25 "RNA polymerase III subunit...   176  1.7e-18   2
UNIPROTKB|E1BV29 - symbol:POLR3H "Uncharacterized protein...   223  1.7e-18   1
FB|FBgn0036188 - symbol:CG7339 species:7227 "Drosophila m...   178  2.1e-18   2
DICTYBASE|DDB_G0273523 - symbol:rpc25-2 "RNA polymerase I...   180  2.7e-18   2
DICTYBASE|DDB_G0273425 - symbol:rpc25-1 "RNA polymerase I...   180  2.7e-18   2
CGD|CAL0005692 - symbol:orf19.443 species:5476 "Candida a...   206  1.1e-16   1
POMBASE|SPBC2G5.07c - symbol:rpc25 "DNA-directed RNA poly...   204  1.8e-16   1
ASPGD|ASPL0000045357 - symbol:AN1447 species:162425 "Emer...   169  9.1e-13   1
FB|FBgn0051155 - symbol:Rpb7 "Rpb7" species:7227 "Drosoph...   118  4.5e-07   1
POMBASE|SPACUNK4.06c - symbol:rpb7 "DNA-directed RNA poly...   115  2.1e-06   1
UNIPROTKB|F8WDV1 - symbol:POLR3H "DNA-directed RNA polyme...   107  3.4e-06   1
SGD|S000002812 - symbol:RPB7 "RNA polymerase II subunit B...   112  7.4e-06   1
UNIPROTKB|Q5E9B8 - symbol:POLR2G "DNA-directed RNA polyme...   111  1.1e-05   1
UNIPROTKB|P62487 - symbol:POLR2G "DNA-directed RNA polyme...   111  1.1e-05   1
UNIPROTKB|I3LJZ9 - symbol:POLR2G "Uncharacterized protein...   111  1.1e-05   1
MGI|MGI:1914960 - symbol:Polr2g "polymerase (RNA) II (DNA...   111  1.1e-05   1
RGD|621284 - symbol:Polr2g "polymerase (RNA) II (DNA dire...   111  1.1e-05   1
ZFIN|ZDB-GENE-030131-2808 - symbol:polr2gl "polymerase (R...   111  1.1e-05   1
CGD|CAL0004143 - symbol:RPB7 species:5476 "Candida albica...   101  0.00044   1
UNIPROTKB|Q5A8Y7 - symbol:RPB7 "Likely RNA Pol II core co...   101  0.00044   1
WB|WBGene00021845 - symbol:rpb-7 species:6239 "Caenorhabd...   100  0.00099   1


>TAIR|locus:2033077 [details] [associations]
            symbol:AT1G06790 species:3702 "Arabidopsis thaliana"
            [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA;ISS] [GO:0009507
            "chloroplast" evidence=ISM] [GO:0009062 "fatty acid catabolic
            process" evidence=RCA] InterPro:IPR005576 Pfam:PF03876
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006351
            InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AC011001 GO:GO:0003899
            UniGene:At.26438 UniGene:At.48160 eggNOG:COG1095
            Gene3D:3.30.1490.120 SUPFAM:SSF88798 HOGENOM:HOG000157370 KO:K03022
            InterPro:IPR013238 Pfam:PF08292 OMA:NVGLCIA EMBL:AY065288
            EMBL:AY142661 IPI:IPI00527075 PIR:G86202 RefSeq:NP_172164.1
            ProteinModelPortal:Q9M9Y6 SMR:Q9M9Y6 IntAct:Q9M9Y6 STRING:Q9M9Y6
            PaxDb:Q9M9Y6 PRIDE:Q9M9Y6 DNASU:837190 EnsemblPlants:AT1G06790.1
            GeneID:837190 KEGG:ath:AT1G06790 TAIR:At1g06790 InParanoid:Q9M9Y6
            PhylomeDB:Q9M9Y6 ProtClustDB:CLSN2682503 ArrayExpress:Q9M9Y6
            Genevestigator:Q9M9Y6 Uniprot:Q9M9Y6
        Length = 204

 Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
 Identities = 109/194 (56%), Positives = 141/194 (72%)

Query:     1 MFYLSKIEHTXXXXXXXXXXXXNEAIKLELENVFLDK---------------EIEGGFVY 45
             MFYLS++EH+             +AIK  L+NVFLDK                +EGGFV 
Sbjct:     1 MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60

Query:    46 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 105
             PG+GA+T+ V  R+VVFRPFVGE+IAAK KESDANGLRL+LGFF+DIYVP+ L+P P+R 
Sbjct:    61 PGDGAATYKVGLRIVVFRPFVGEVIAAKFKESDANGLRLTLGFFDDIYVPAPLMPKPNRC 120

Query:   106 EPDPYGRYEVKWIWEFGDTK--YVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVIN 163
             EPDPY R ++ W+WE+G+ K  Y++D   +IKFRV S++YPS+P E+AE +KPFAPMV+ 
Sbjct:   121 EPDPYNRKQMIWVWEYGEPKEDYIVDDACQIKFRVESISYPSVPTERAEDAKPFAPMVVT 180

Query:   164 GSIDYDGLGPVSWW 177
             G++D DGLGPVSWW
Sbjct:   181 GNMDDDGLGPVSWW 194


>ZFIN|ZDB-GENE-040718-179 [details] [associations]
            symbol:polr3h "polymerase (RNA) III (DNA directed)
            polypeptide H" species:7955 "Danio rerio" [GO:0003899 "DNA-directed
            RNA polymerase activity" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] InterPro:IPR004519 InterPro:IPR005576 Pfam:PF03876
            ZFIN:ZDB-GENE-040718-179 GO:GO:0003677 GO:GO:0006351
            InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003899 eggNOG:COG1095
            Gene3D:3.30.1490.120 SUPFAM:SSF88798 CTD:171568
            HOGENOM:HOG000157370 HOVERGEN:HBG044510 KO:K03022 OrthoDB:EOG434W70
            InterPro:IPR013238 Pfam:PF08292 TIGRFAMs:TIGR00448 EMBL:BC076336
            IPI:IPI00495469 RefSeq:NP_001002476.1 UniGene:Dr.78164
            ProteinModelPortal:Q6DGK6 STRING:Q6DGK6 GeneID:436749
            KEGG:dre:436749 InParanoid:Q6DGK6 NextBio:20831187
            ArrayExpress:Q6DGK6 Uniprot:Q6DGK6
        Length = 214

 Score = 199 (75.1 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
 Identities = 41/105 (39%), Positives = 62/105 (59%)

Query:    38 EIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSH 97
             ++E  +++PG+GAS   V FR VVF PF+ EI+  K+K   A G+ +SLGFF+DI +P  
Sbjct:    53 KLEDSYIFPGDGASHTKVHFRYVVFHPFLDEILLGKIKGCSAEGVHVSLGFFDDILIPPE 112

Query:    98 LLPSPSRSEPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRV 138
              L  P++     +   E  W+WE+    G     +D  +EI+FRV
Sbjct:   113 SLQQPAK-----FDEAEQVWVWEYETDEGTHDLYMDQGEEIRFRV 152

 Score = 59 (25.8 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query:   144 PSIPIEQAEGSKPFAPMVINGSIDYDGLGPVSWW 177
             P    E A   K  +P  + GS+   GLG +SWW
Sbjct:   180 PPAGAEDAAQQKE-SPYTLIGSVSEPGLGLLSWW 212


>MGI|MGI:1926179 [details] [associations]
            symbol:Polr3h "polymerase (RNA) III (DNA directed)
            polypeptide H" species:10090 "Mus musculus" [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005666 "DNA-directed
            RNA polymerase III complex" evidence=ISO] [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISO]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0006383 "transcription from RNA polymerase III promoter"
            evidence=ISO] [GO:0045087 "innate immune response" evidence=IEA]
            [GO:0051607 "defense response to virus" evidence=IEA]
            InterPro:IPR004519 InterPro:IPR005576 Pfam:PF03876 MGI:MGI:1926179
            GO:GO:0003677 GO:GO:0045087 GO:GO:0051607 InterPro:IPR012340
            SUPFAM:SSF50249 GO:GO:0006383 GO:GO:0005666 GO:GO:0003899
            eggNOG:COG1095 Gene3D:3.30.1490.120 SUPFAM:SSF88798 CTD:171568
            HOGENOM:HOG000157370 HOVERGEN:HBG044510 KO:K03022 OrthoDB:EOG434W70
            InterPro:IPR013238 Pfam:PF08292 TIGRFAMs:TIGR00448 OMA:NVGLCIA
            EMBL:AK019868 EMBL:BC010793 IPI:IPI00187529 RefSeq:NP_084505.2
            UniGene:Mm.215115 ProteinModelPortal:Q9D2C6 SMR:Q9D2C6
            STRING:Q9D2C6 PaxDb:Q9D2C6 PRIDE:Q9D2C6 Ensembl:ENSMUST00000023113
            GeneID:78929 KEGG:mmu:78929 UCSC:uc007wxr.1
            GeneTree:ENSGT00390000004383 InParanoid:Q9D2C6 ChiTaRS:POLR3H
            NextBio:349786 Bgee:Q9D2C6 CleanEx:MM_POLR3H Genevestigator:Q9D2C6
            GermOnline:ENSMUSG00000022476 Uniprot:Q9D2C6
        Length = 204

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 58/154 (37%), Positives = 84/154 (54%)

Query:    38 EIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSH 97
             ++E  +V+PG+GAS   V FR VVF PF+ EI+  K+K     G+ +SLGFF+DI +P  
Sbjct:    53 KLEDAYVFPGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPE 112

Query:    98 LLPSPSRSEPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIP-- 147
              L  P++     +   E  W+WE+    G     +D  +EI+FRV+  ++    P+ P  
Sbjct:   113 SLQQPAK-----FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSS 167

Query:   148 IEQAEGS----KPFAPMVINGSIDYDGLGPVSWW 177
              E A  S    K  AP  + GSI   GLG +SWW
Sbjct:   168 AEAASSSEELPKKEAPYTLVGSISEPGLGLLSWW 201


>RGD|1305889 [details] [associations]
            symbol:Polr3h "polymerase (RNA) III (DNA directed) polypeptide
            H" species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005654
            "nucleoplasm" evidence=ISO] [GO:0005666 "DNA-directed RNA
            polymerase III complex" evidence=IEA;ISO] [GO:0005813 "centrosome"
            evidence=IEA;ISO] [GO:0006139 "nucleobase-containing compound
            metabolic process" evidence=ISO] [GO:0006383 "transcription from
            RNA polymerase III promoter" evidence=IEA;ISO] [GO:0043231
            "intracellular membrane-bounded organelle" evidence=ISO]
            [GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR004519
            InterPro:IPR005576 Pfam:PF03876 RGD:1305889 GO:GO:0003677
            InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006383 EMBL:CH473950
            GO:GO:0005666 GO:GO:0003899 eggNOG:COG1095 Gene3D:3.30.1490.120
            SUPFAM:SSF88798 CTD:171568 HOGENOM:HOG000157370 HOVERGEN:HBG044510
            KO:K03022 OrthoDB:EOG434W70 InterPro:IPR013238 Pfam:PF08292
            TIGRFAMs:TIGR00448 OMA:NVGLCIA GeneTree:ENSGT00390000004383
            EMBL:BC167088 IPI:IPI00210015 RefSeq:NP_001120767.1
            UniGene:Rn.13037 SMR:B2RZB0 STRING:B2RZB0
            Ensembl:ENSRNOT00000005943 GeneID:300088 KEGG:rno:300088
            UCSC:RGD:1305889 NextBio:646311 Genevestigator:B2RZB0
            Uniprot:B2RZB0
        Length = 204

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 58/154 (37%), Positives = 84/154 (54%)

Query:    38 EIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSH 97
             ++E  +V+PG+GAS   V FR VVF PF+ EI+  K+K     G+ +SLGFF+DI +P  
Sbjct:    53 KLEDAYVFPGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPE 112

Query:    98 LLPSPSRSEPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIP-- 147
              L  P++     +   E  W+WE+    G     +D  +EI+FRV+  ++    P+ P  
Sbjct:   113 SLQQPAK-----FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSS 167

Query:   148 IEQAEGS----KPFAPMVINGSIDYDGLGPVSWW 177
              E A  S    K  AP  + GSI   GLG +SWW
Sbjct:   168 AEAASSSEELPKKEAPYTLVGSISEPGLGLLSWW 201


>UNIPROTKB|F1ML03 [details] [associations]
            symbol:POLR3H "DNA-directed RNA polymerase III subunit
            RPC8" species:9913 "Bos taurus" [GO:0006383 "transcription from RNA
            polymerase III promoter" evidence=IEA] [GO:0005813 "centrosome"
            evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase III complex"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR004519 InterPro:IPR005576 Pfam:PF03876 GO:GO:0003677
            InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006383 GO:GO:0005666
            GO:GO:0003899 Gene3D:3.30.1490.120 SUPFAM:SSF88798 IPI:IPI00711860
            UniGene:Bt.55567 InterPro:IPR013238 Pfam:PF08292 TIGRFAMs:TIGR00448
            OMA:NVGLCIA GeneTree:ENSGT00390000004383 EMBL:DAAA02014732
            Ensembl:ENSBTAT00000006987 Uniprot:F1ML03
        Length = 204

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 57/154 (37%), Positives = 84/154 (54%)

Query:    38 EIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSH 97
             ++E  +V+PG+GAS   V FR VVF PF+ EI+  K+K     G+ +SLGFF+DI +P  
Sbjct:    53 KLEDAYVFPGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPE 112

Query:    98 LLPSPSRSEPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIP-- 147
              L  P++     +   E  W+WE+    G     +D  +E++FRV+  ++    P+ P  
Sbjct:   113 SLQQPAK-----FDEAEQVWVWEYETEEGAHDLYMDIGEEVRFRVVDESFVDTSPTGPSS 167

Query:   148 IEQAEGS----KPFAPMVINGSIDYDGLGPVSWW 177
              E A  S    K  AP  + GSI   GLG +SWW
Sbjct:   168 AEAASSSEELPKKEAPYTLMGSISEPGLGLLSWW 201


>UNIPROTKB|Q2T9X1 [details] [associations]
            symbol:POLR3H "DNA-directed RNA polymerase III subunit
            RPC8" species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
            [GO:0051607 "defense response to virus" evidence=IEA] [GO:0045087
            "innate immune response" evidence=IEA] [GO:0003899 "DNA-directed
            RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] InterPro:IPR004519 InterPro:IPR005576 Pfam:PF03876
            GO:GO:0005634 GO:GO:0003677 GO:GO:0045087 GO:GO:0006351
            GO:GO:0051607 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003899
            eggNOG:COG1095 Gene3D:3.30.1490.120 SUPFAM:SSF88798 EMBL:BC111227
            IPI:IPI00711860 RefSeq:NP_001070430.1 UniGene:Bt.55567
            ProteinModelPortal:Q2T9X1 STRING:Q2T9X1 GeneID:767843
            KEGG:bta:767843 CTD:171568 HOGENOM:HOG000157370 HOVERGEN:HBG044510
            InParanoid:Q2T9X1 KO:K03022 OrthoDB:EOG434W70 NextBio:20918210
            InterPro:IPR013238 Pfam:PF08292 TIGRFAMs:TIGR00448 Uniprot:Q2T9X1
        Length = 204

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 57/154 (37%), Positives = 84/154 (54%)

Query:    38 EIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSH 97
             ++E  +V+PG+GAS   V FR VVF PF+ EI+  K+K     G+ +SLGFF+DI +P  
Sbjct:    53 KLEDAYVFPGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPE 112

Query:    98 LLPSPSRSEPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIP-- 147
              L  P++     +   E  W+WE+    G     +D  +E++FRV+  ++    P+ P  
Sbjct:   113 SLQQPAK-----FDEAEQVWVWEYETEEGAHDLYMDIGEEVRFRVVDESFVDTSPTGPSS 167

Query:   148 IEQAEGS----KPFAPMVINGSIDYDGLGPVSWW 177
              E A  S    K  AP  + GSI   GLG +SWW
Sbjct:   168 AEAASSSEELPKKEAPYTLMGSISEPGLGLLSWW 201


>UNIPROTKB|Q9Y535 [details] [associations]
            symbol:POLR3H "DNA-directed RNA polymerase III subunit
            RPC8" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0045087 "innate immune response" evidence=IEA]
            [GO:0051607 "defense response to virus" evidence=IEA] [GO:0005666
            "DNA-directed RNA polymerase III complex" evidence=IDA] [GO:0005654
            "nucleoplasm" evidence=IDA;TAS] [GO:0003899 "DNA-directed RNA
            polymerase activity" evidence=IDA] [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=IDA]
            [GO:0006383 "transcription from RNA polymerase III promoter"
            evidence=IDA;TAS] [GO:0006385 "transcription elongation from RNA
            polymerase III promoter" evidence=TAS] [GO:0006386 "termination of
            RNA polymerase III transcription" evidence=TAS] [GO:0010467 "gene
            expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813 "centrosome"
            evidence=IDA] [GO:0043231 "intracellular membrane-bounded
            organelle" evidence=IDA] Reactome:REACT_71 InterPro:IPR004519
            InterPro:IPR005576 Pfam:PF03876 GO:GO:0005813 GO:GO:0003677
            EMBL:CH471095 GO:GO:0045087 GO:GO:0051607 EMBL:AL023553
            InterPro:IPR012340 SUPFAM:SSF50249 Reactome:REACT_1788
            GO:GO:0005666 GO:GO:0003899 GO:GO:0006386 GO:GO:0006385
            eggNOG:COG1095 Gene3D:3.30.1490.120 SUPFAM:SSF88798 CTD:171568
            HOGENOM:HOG000157370 HOVERGEN:HBG044510 KO:K03022 OrthoDB:EOG434W70
            InterPro:IPR013238 Pfam:PF08292 TIGRFAMs:TIGR00448 EMBL:AY092087
            EMBL:AB051452 EMBL:CR456459 EMBL:BC017248 EMBL:BC088367
            IPI:IPI00215871 IPI:IPI00289667 RefSeq:NP_001018060.1
            RefSeq:NP_001018062.1 RefSeq:NP_612211.1 UniGene:Hs.712617
            ProteinModelPortal:Q9Y535 SMR:Q9Y535 IntAct:Q9Y535 STRING:Q9Y535
            DMDM:29428071 PaxDb:Q9Y535 PRIDE:Q9Y535 DNASU:171568
            Ensembl:ENST00000337566 Ensembl:ENST00000355209
            Ensembl:ENST00000396504 Ensembl:ENST00000407461 GeneID:171568
            KEGG:hsa:171568 UCSC:uc003baf.3 UCSC:uc003bai.2
            GeneCards:GC22M041921 HGNC:HGNC:30349 HPA:HPA046787
            neXtProt:NX_Q9Y535 PharmGKB:PA134994174 InParanoid:Q9Y535
            OMA:NVGLCIA PhylomeDB:Q9Y535 GenomeRNAi:171568 NextBio:89296
            ArrayExpress:Q9Y535 Bgee:Q9Y535 CleanEx:HS_POLR3H
            Genevestigator:Q9Y535 GermOnline:ENSG00000100413 Uniprot:Q9Y535
        Length = 204

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 56/154 (36%), Positives = 82/154 (53%)

Query:    38 EIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSH 97
             ++E  +V+PG+GAS   V FR VVF PF+ EI+  K+K     G+ +SLGFF+DI +P  
Sbjct:    53 KLEDAYVFPGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPE 112

Query:    98 LLPSPSRSEPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIP-- 147
              L  P++     +   E  W+WE+    G     +D  +EI+FRV+  ++    P+ P  
Sbjct:   113 SLQQPAK-----FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSS 167

Query:   148 ----IEQAEGSKPFAPMVINGSIDYDGLGPVSWW 177
                     E  K  AP  + GSI   GLG +SWW
Sbjct:   168 ADATTSSEELPKKEAPYTLVGSISEPGLGLLSWW 201


>UNIPROTKB|F1SRD6 [details] [associations]
            symbol:POLR3H "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0006383 "transcription from RNA polymerase III
            promoter" evidence=IEA] [GO:0005813 "centrosome" evidence=IEA]
            [GO:0005666 "DNA-directed RNA polymerase III complex" evidence=IEA]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR004519
            InterPro:IPR005576 Pfam:PF03876 GO:GO:0003677 InterPro:IPR012340
            SUPFAM:SSF50249 GO:GO:0006383 GO:GO:0005666 GO:GO:0003899
            Gene3D:3.30.1490.120 SUPFAM:SSF88798 CTD:171568 KO:K03022
            InterPro:IPR013238 Pfam:PF08292 TIGRFAMs:TIGR00448 OMA:NVGLCIA
            GeneTree:ENSGT00390000004383 EMBL:CU633382 RefSeq:XP_001929168.1
            UniGene:Ssc.54915 Ensembl:ENSSSCT00000000069 GeneID:100157033
            KEGG:ssc:100157033 Uniprot:F1SRD6
        Length = 204

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 56/154 (36%), Positives = 84/154 (54%)

Query:    38 EIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSH 97
             ++E  +V+PG+GAS   V FR VVF PF+ EI+  K+K     G+ +SLGFF+DI +P  
Sbjct:    53 KLEDAYVFPGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPE 112

Query:    98 LLPSPSRSEPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIP-- 147
              L  P++     +   E  W+WE+    G     +D  +E++FRV+  ++    P+ P  
Sbjct:   113 SLQQPAK-----FDEAEQVWVWEYETEEGAHDLYMDTGEELRFRVVDESFVDTSPTGPSS 167

Query:   148 IEQAEGSKPF----APMVINGSIDYDGLGPVSWW 177
              E A  S+      AP  + GSI   GLG +SWW
Sbjct:   168 AEAASSSEELPRKEAPYTLVGSICEPGLGLLSWW 201


>UNIPROTKB|E2RRG9 [details] [associations]
            symbol:POLR3H "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006383 "transcription from RNA polymerase
            III promoter" evidence=IEA] [GO:0005813 "centrosome" evidence=IEA]
            [GO:0005666 "DNA-directed RNA polymerase III complex" evidence=IEA]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR004519
            InterPro:IPR005576 Pfam:PF03876 GO:GO:0003677 InterPro:IPR012340
            SUPFAM:SSF50249 GO:GO:0006383 GO:GO:0005666 GO:GO:0003899
            Gene3D:3.30.1490.120 SUPFAM:SSF88798 CTD:171568 KO:K03022
            InterPro:IPR013238 Pfam:PF08292 TIGRFAMs:TIGR00448 OMA:NVGLCIA
            GeneTree:ENSGT00390000004383 EMBL:AAEX03007296 RefSeq:XP_849136.1
            ProteinModelPortal:E2RRG9 Ensembl:ENSCAFT00000001618 GeneID:607850
            KEGG:cfa:607850 NextBio:20893547 Uniprot:E2RRG9
        Length = 204

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 56/153 (36%), Positives = 83/153 (54%)

Query:    39 IEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHL 98
             +E  +V+PG+GAS   V FR VVF PF+ EI+  ++K     G+ +SLGFF+DI +P   
Sbjct:    54 LEDAYVFPGDGASHTKVHFRYVVFHPFLDEILIGRIKGCSPEGVHVSLGFFDDILIPPES 113

Query:    99 LPSPSRSEPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPIE- 149
             L  P++     +   E  W+WE+    G     +D  +EI+FRV+  ++    P+ P   
Sbjct:   114 LQQPAK-----FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSA 168

Query:   150 QAEGS-----KPFAPMVINGSIDYDGLGPVSWW 177
             +A  S     K  AP  + GSI   GLG +SWW
Sbjct:   169 EATSSSEELPKKEAPYTLVGSISEPGLGLLSWW 201


>WB|WBGene00014111 [details] [associations]
            symbol:rpc-25 species:6239 "Caenorhabditis elegans"
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0040010 "positive regulation of growth rate" evidence=IMP]
            [GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
            genitalia development" evidence=IMP] [GO:0040007 "growth"
            evidence=IMP] [GO:0002119 "nematode larval development"
            evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
            evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
            [GO:0016477 "cell migration" evidence=IMP] InterPro:IPR005576
            Pfam:PF03876 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
            GO:GO:0016477 GO:GO:0008406 GO:GO:0002119 GO:GO:0006351
            GO:GO:0040035 InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967
            SMART:SM00316 GO:GO:0003899 EMBL:Z70783 eggNOG:COG1095
            Gene3D:3.30.1490.120 SUPFAM:SSF88798 HOGENOM:HOG000157370 KO:K03022
            InterPro:IPR013238 Pfam:PF08292 OMA:NVGLCIA
            GeneTree:ENSGT00390000004383 PIR:T28049 RefSeq:NP_505625.1
            ProteinModelPortal:Q23645 SMR:Q23645 STRING:Q23645 PaxDb:Q23645
            EnsemblMetazoa:ZK856.10 GeneID:179418 KEGG:cel:CELE_ZK856.10
            UCSC:ZK856.10 CTD:179418 WormBase:ZK856.10 InParanoid:Q23645
            NextBio:905302 Uniprot:Q23645
        Length = 239

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 56/147 (38%), Positives = 79/147 (53%)

Query:    38 EIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSH 97
             EI   ++ PGEG     VKFR++VFRPFV E+I AK+  S   GL L++ FFEDI+VP+ 
Sbjct:    53 EIGDSYILPGEGDCRARVKFRMIVFRPFVDEVIEAKVIGSSRQGLCLTIQFFEDIFVPAE 112

Query:    98 LLPSPSRSEPDPYGRYEVKWIWEF----GD--TKYVIDGLDEIKFRVLSVNYPSIPIEQA 151
              LP P   E +  G+    W WE+    G+   K  +D    ++FRV  + +  +  E  
Sbjct:   113 KLPEPHVFEEE--GQV---WYWEYAQEDGEPPAKLYMDPGKIVRFRVTEIIFKDLKPELT 167

Query:   152 -EGSKPFAPMVINGSIDYDGLGPVSWW 177
              E  K    M I G++   GLG + WW
Sbjct:   168 HEERKTEKSMEIKGTMASTGLGCIGWW 194


>SGD|S000001627 [details] [associations]
            symbol:RPC25 "RNA polymerase III subunit C25" species:4932
            "Saccharomyces cerevisiae" [GO:0005666 "DNA-directed RNA polymerase
            III complex" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0006384 "transcription initiation from RNA polymerase III
            promoter" evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA;IDA] [GO:0042797 "tRNA transcription from RNA
            polymerase III promoter" evidence=IDA;IMP] InterPro:IPR004519
            InterPro:IPR005576 Pfam:PF03876 SGD:S000001627 GO:GO:0003677
            EMBL:BK006944 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0005666
            GO:GO:0003899 Reactome:REACT_83470 EMBL:Z25464 Reactome:REACT_87991
            GO:GO:0042797 eggNOG:COG1095 Gene3D:3.30.1490.120 SUPFAM:SSF88798
            GO:GO:0006384 HOGENOM:HOG000157370 KO:K03022 InterPro:IPR013238
            Pfam:PF08292 TIGRFAMs:TIGR00448 OMA:NVGLCIA
            GeneTree:ENSGT00390000004383 OrthoDB:EOG4NCQP8 EMBL:U11048
            EMBL:Z28144 PIR:S37973 RefSeq:NP_012778.1 PDB:2CKZ PDBsum:2CKZ
            ProteinModelPortal:P35718 SMR:P35718 DIP:DIP-1414N IntAct:P35718
            MINT:MINT-399757 STRING:P35718 PaxDb:P35718 EnsemblFungi:YKL144C
            GeneID:853713 KEGG:sce:YKL144C CYGD:YKL144c
            EvolutionaryTrace:P35718 NextBio:974722 Genevestigator:P35718
            GermOnline:YKL144C Uniprot:P35718
        Length = 212

 Score = 176 (67.0 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
 Identities = 38/102 (37%), Positives = 61/102 (59%)

Query:    39 IEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSL-GFFEDIYVPSH 97
             +E G + PG+G+S   V FR VVF+PF+GEI+   + +  A G+++SL G F+DI++P +
Sbjct:    54 VEEGQLKPGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQN 113

Query:    98 LLPSPSRSEPDPYGRYEVKWIWEFGD-TKYVIDGLDEIKFRV 138
             +L       P+     E  WIW   + TK   D  ++I+FR+
Sbjct:   114 MLFEGCYYTPE-----ESAWIWPMDEETKLYFDVNEKIRFRI 150

 Score = 61 (26.5 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query:   149 EQAEGSKPFAPMVINGSIDYDGLGPVSWW 177
             E  +  KP A  ++ GS   DG+G VSWW
Sbjct:   184 ETPQNEKPPAYALL-GSCQTDGMGLVSWW 211


>UNIPROTKB|E1BV29 [details] [associations]
            symbol:POLR3H "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005666
            "DNA-directed RNA polymerase III complex" evidence=IEA] [GO:0005813
            "centrosome" evidence=IEA] [GO:0006383 "transcription from RNA
            polymerase III promoter" evidence=IEA] InterPro:IPR004519
            InterPro:IPR005576 Pfam:PF03876 GO:GO:0003677 InterPro:IPR012340
            SUPFAM:SSF50249 GO:GO:0006383 GO:GO:0005666 GO:GO:0003899
            Gene3D:3.30.1490.120 SUPFAM:SSF88798 InterPro:IPR013238
            Pfam:PF08292 TIGRFAMs:TIGR00448 OMA:NVGLCIA
            GeneTree:ENSGT00390000004383 EMBL:AADN02006068 IPI:IPI00580368
            Ensembl:ENSGALT00000019488 Uniprot:E1BV29
        Length = 209

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 55/157 (35%), Positives = 82/157 (52%)

Query:    38 EIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSH 97
             ++E  +++PG+GAS   V FR VVF PF+ EI+  ++K    +G+ +S+GFF+DI +P  
Sbjct:    53 KLEDSYIFPGDGASHTKVHFRYVVFHPFLDEILVGEIKSCSQDGVHVSIGFFDDIVIPPE 112

Query:    98 LLPSPSRSEPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPIE 149
              L  P+          E  W+WE+    G     +D  +EI+FRV+   +    P+ P  
Sbjct:   113 SLQQPALGVASDEA--EQVWVWEYETEEGAHDLYMDIGEEIRFRVVDETFVDTSPTGP-S 169

Query:   150 QAEGS---------KPFAPMVINGSIDYDGLGPVSWW 177
              AE S         K  AP  + GSI   GLG +SWW
Sbjct:   170 SAEASTSNATEEVQKKEAPYTLVGSISEPGLGLLSWW 206


>FB|FBgn0036188 [details] [associations]
            symbol:CG7339 species:7227 "Drosophila melanogaster"
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
            [GO:0006383 "transcription from RNA polymerase III promoter"
            evidence=ISS] [GO:0005666 "DNA-directed RNA polymerase III complex"
            evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP]
            InterPro:IPR005576 Pfam:PF03876 EMBL:AE014296 GO:GO:0022008
            GO:GO:0006351 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003899
            eggNOG:COG1095 Gene3D:3.30.1490.120 SUPFAM:SSF88798 KO:K03022
            InterPro:IPR013238 Pfam:PF08292 OMA:NVGLCIA
            GeneTree:ENSGT00390000004383 EMBL:AY118479 RefSeq:NP_648490.1
            UniGene:Dm.11797 SMR:Q9VTL6 IntAct:Q9VTL6 STRING:Q9VTL6
            EnsemblMetazoa:FBtr0076107 EnsemblMetazoa:FBtr0331530 GeneID:39310
            KEGG:dme:Dmel_CG7339 UCSC:CG7339-RA FlyBase:FBgn0036188
            InParanoid:Q9VTL6 OrthoDB:EOG4F4QT4 GenomeRNAi:39310 NextBio:812992
            Uniprot:Q9VTL6
        Length = 240

 Score = 178 (67.7 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
 Identities = 40/105 (38%), Positives = 58/105 (55%)

Query:    39 IEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHL 98
             ++   + PG+GAS   V FR VVFRP VG +I  K++     G+ ++LGFF+DI +P   
Sbjct:    54 LKDSIILPGDGASHTEVLFRYVVFRPMVGTVITGKIRNCSREGVHVTLGFFDDILIPHAA 113

Query:    99 LPSPSRSEPDPYGRYEVKWIWEF---GDTKY--VIDGLDEIKFRV 138
             L  PSR     +   E  W+WE+      K+   +D  + IKFRV
Sbjct:   114 LQHPSR-----FDEAEQAWVWEYPLEDGAKHDLFMDVGEPIKFRV 153

 Score = 58 (25.5 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query:   145 SIPIEQAEGSKPFAPMVINGSIDYDGLGPVSWW 177
             S  +  A   +   P  I G+I+  GLG +SWW
Sbjct:   180 SAAVASATSQEVKTPYRIIGAINESGLGVLSWW 212


>DICTYBASE|DDB_G0273523 [details] [associations]
            symbol:rpc25-2 "RNA polymerase III subunit"
            species:44689 "Dictyostelium discoideum" [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA;ISS]
            [GO:0006384 "transcription initiation from RNA polymerase III
            promoter" evidence=ISS] [GO:0005666 "DNA-directed RNA polymerase
            III complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR005576 Pfam:PF03876 dictyBase:DDB_G0273523
            dictyBase:DDB_G0273425 GenomeReviews:CM000151_GR InterPro:IPR012340
            SUPFAM:SSF50249 EMBL:AAFI02000010 GO:GO:0005666 GO:GO:0003899
            eggNOG:COG1095 Gene3D:3.30.1490.120 SUPFAM:SSF88798 GO:GO:0006384
            InterPro:IPR013238 Pfam:PF08292 RefSeq:XP_644608.1
            RefSeq:XP_644642.1 ProteinModelPortal:Q557J3 STRING:Q557J3
            EnsemblProtists:DDB0216296 EnsemblProtists:DDB0304862
            GeneID:8618972 GeneID:8619005 KEGG:ddi:DDB_G0273425
            KEGG:ddi:DDB_G0273523 OMA:WEWNENQ ProtClustDB:CLSZ2729227
            Uniprot:Q557J3
        Length = 252

 Score = 180 (68.4 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
 Identities = 35/105 (33%), Positives = 62/105 (59%)

Query:    43 FVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSP 102
             +V+ G+G +   V+FR+VVF+PF GE++   +K+S    +++SLGFF +IY+    LP+P
Sbjct:    57 YVHSGDGGAHLMVRFRMVVFKPFKGEVLEGVIKKSSRQSIQISLGFFHEIYLNPIELPNP 116

Query:   103 SRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY-PSI 146
             S      Y + E  W WE+ + +   +    ++F++  V + P I
Sbjct:   117 SN-----YNQEEGLWYWEWNENQLFFEDGGRVRFKIDQVEFNPEI 156

 Score = 55 (24.4 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query:   158 APMVINGSIDYDGLGPVSWW 177
             +P+++  S+   GLG VSWW
Sbjct:   195 SPLILKVSMREAGLGMVSWW 214


>DICTYBASE|DDB_G0273425 [details] [associations]
            symbol:rpc25-1 "RNA polymerase III subunit"
            species:44689 "Dictyostelium discoideum" [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA;ISS]
            [GO:0006384 "transcription initiation from RNA polymerase III
            promoter" evidence=ISS] [GO:0005666 "DNA-directed RNA polymerase
            III complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR005576 Pfam:PF03876 dictyBase:DDB_G0273523
            dictyBase:DDB_G0273425 GenomeReviews:CM000151_GR InterPro:IPR012340
            SUPFAM:SSF50249 EMBL:AAFI02000010 GO:GO:0005666 GO:GO:0003899
            eggNOG:COG1095 Gene3D:3.30.1490.120 SUPFAM:SSF88798 GO:GO:0006384
            InterPro:IPR013238 Pfam:PF08292 RefSeq:XP_644608.1
            RefSeq:XP_644642.1 ProteinModelPortal:Q557J3 STRING:Q557J3
            EnsemblProtists:DDB0216296 EnsemblProtists:DDB0304862
            GeneID:8618972 GeneID:8619005 KEGG:ddi:DDB_G0273425
            KEGG:ddi:DDB_G0273523 OMA:WEWNENQ ProtClustDB:CLSZ2729227
            Uniprot:Q557J3
        Length = 252

 Score = 180 (68.4 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
 Identities = 35/105 (33%), Positives = 62/105 (59%)

Query:    43 FVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSP 102
             +V+ G+G +   V+FR+VVF+PF GE++   +K+S    +++SLGFF +IY+    LP+P
Sbjct:    57 YVHSGDGGAHLMVRFRMVVFKPFKGEVLEGVIKKSSRQSIQISLGFFHEIYLNPIELPNP 116

Query:   103 SRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY-PSI 146
             S      Y + E  W WE+ + +   +    ++F++  V + P I
Sbjct:   117 SN-----YNQEEGLWYWEWNENQLFFEDGGRVRFKIDQVEFNPEI 156

 Score = 55 (24.4 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query:   158 APMVINGSIDYDGLGPVSWW 177
             +P+++  S+   GLG VSWW
Sbjct:   195 SPLILKVSMREAGLGMVSWW 214


>CGD|CAL0005692 [details] [associations]
            symbol:orf19.443 species:5476 "Candida albicans" [GO:0005829
            "cytosol" evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase
            III complex" evidence=IEA] [GO:0006384 "transcription initiation
            from RNA polymerase III promoter" evidence=IEA] [GO:0042797 "tRNA
            transcription from RNA polymerase III promoter" evidence=IEA]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            InterPro:IPR004519 InterPro:IPR005576 Pfam:PF03876 CGD:CAL0005692
            GO:GO:0003677 GO:GO:0006351 InterPro:IPR012340 SUPFAM:SSF50249
            GO:GO:0003899 EMBL:AACQ01000078 EMBL:AACQ01000077 eggNOG:COG1095
            Gene3D:3.30.1490.120 SUPFAM:SSF88798 HOGENOM:HOG000157370 KO:K03022
            InterPro:IPR013238 Pfam:PF08292 TIGRFAMs:TIGR00448
            RefSeq:XP_715878.1 RefSeq:XP_715928.1 ProteinModelPortal:Q5A298
            SMR:Q5A298 STRING:Q5A298 GeneID:3642414 GeneID:3642463
            KEGG:cal:CaO19.443 KEGG:cal:CaO19.8073 Uniprot:Q5A298
        Length = 195

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 51/148 (34%), Positives = 78/148 (52%)

Query:    38 EIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSH 97
             +I+ G + PG+G S   V+FR +V++PF GEI+   + E  A G+++ + FF++I++P  
Sbjct:    53 DIKDGLLKPGDGGSYVEVRFRSIVWKPFRGEILTGWVTECTAKGIKVRMEFFDEIWIPKD 112

Query:    98 LLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEG 153
              L      E   Y   E  WI+   + +  ID  ++I+FRV   N+    P +  EQ E 
Sbjct:   113 FL-----FENCKYSESEQAWIYLLDENELFIDVNEKIRFRVEEENFYNVKPKLEDEQTEE 167

Query:   154 SKP---FAPMVINGSI-DYDGLGPVSWW 177
              K      P  I  S  DY G+G VSWW
Sbjct:   168 EKKATTLPPYTITASCQDY-GMGCVSWW 194


>POMBASE|SPBC2G5.07c [details] [associations]
            symbol:rpc25 "DNA-directed RNA polymerase III complex
            subunit Rpc25" species:4896 "Schizosaccharomyces pombe" [GO:0003677
            "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
            polymerase activity" evidence=IMP] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005666 "DNA-directed RNA polymerase III complex"
            evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006384
            "transcription initiation from RNA polymerase III promoter"
            evidence=IMP] InterPro:IPR004519 InterPro:IPR005576 Pfam:PF03876
            PomBase:SPBC2G5.07c GO:GO:0005829 GO:GO:0003677 EMBL:CU329671
            GenomeReviews:CU329671_GR InterPro:IPR012340 SUPFAM:SSF50249
            GO:GO:0005666 GO:GO:0003899 eggNOG:COG1095 Gene3D:3.30.1490.120
            SUPFAM:SSF88798 GO:GO:0006384 HOGENOM:HOG000157370 KO:K03022
            InterPro:IPR013238 Pfam:PF08292 TIGRFAMs:TIGR00448 OMA:NVGLCIA
            EMBL:DQ156221 PIR:T40164 RefSeq:NP_596068.1 PDB:3AYH PDBsum:3AYH
            ProteinModelPortal:O94285 STRING:O94285 EnsemblFungi:SPBC2G5.07c.1
            GeneID:2540510 KEGG:spo:SPBC2G5.07c OrthoDB:EOG4NCQP8
            NextBio:20801637 Uniprot:O94285
        Length = 203

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 50/155 (32%), Positives = 81/155 (52%)

Query:    38 EIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSH 97
             +I  G +  G+G+S   V FRL++FRPF GE++  K+K     G+R+++ FF+DI++P  
Sbjct:    53 KIGEGIIKYGDGSSYMNVVFRLIIFRPFRGEVMLGKIKSCSEEGIRVTISFFDDIFIPKD 112

Query:    98 LLPSPSRSEPDPYGRYEVKWIWEF-GD-----TKYVIDGLDEIKFRVLSVNYPSI-P--- 147
             +L  P    PD     E  W+W+  G+     T+   D  +EI+F++ S ++  I P   
Sbjct:   113 MLFDPCVFRPD-----ERAWVWKIEGEDGSEGTELYFDIDEEIRFQIESEDFVDISPKRN 167

Query:   148 -----IEQAEGSKPFAPMVINGSIDYDGLGPVSWW 177
                  I   E  +  +P  +  S   DGLG  +WW
Sbjct:   168 KNATAITGTEALESVSPYTLIASCSRDGLGIPAWW 202


>ASPGD|ASPL0000045357 [details] [associations]
            symbol:AN1447 species:162425 "Emericella nidulans"
            [GO:0006384 "transcription initiation from RNA polymerase III
            promoter" evidence=IEA] [GO:0042797 "tRNA transcription from RNA
            polymerase III promoter" evidence=IEA] [GO:0003899 "DNA-directed
            RNA polymerase activity" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase III complex"
            evidence=IEA] InterPro:IPR005576 Pfam:PF03876 EMBL:BN001307
            GO:GO:0006351 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AACD01000022
            GO:GO:0003899 eggNOG:COG1095 Gene3D:3.30.1490.120 SUPFAM:SSF88798
            HOGENOM:HOG000157370 KO:K03022 InterPro:IPR013238 Pfam:PF08292
            OMA:NVGLCIA OrthoDB:EOG4NCQP8 RefSeq:XP_659051.1
            ProteinModelPortal:Q5BDD3 STRING:Q5BDD3
            EnsemblFungi:CADANIAT00008060 GeneID:2875482 KEGG:ani:AN1447.2
            Uniprot:Q5BDD3
        Length = 208

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 44/118 (37%), Positives = 63/118 (53%)

Query:    23 NEAI-KLELENVFLDK-EIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDAN 80
             N+ I K+ L   F D  E   G +  G G     VKFRL+VFRPF GEI+  K+  +  N
Sbjct:    36 NKVIQKIGLCIGFYDLLESSDGLIGHGTGLVNVNVKFRLIVFRPFRGEIVLGKISSATEN 95

Query:    81 GLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRV 138
             G+++ + FF DI VP  LL   +R +   Y   +  WIWE  +  +  D  + ++FRV
Sbjct:    96 GIKIGVEFFNDILVPPDLLLDGARFD---Y--QDQVWIWENEEGTFYFDVGEVVRFRV 148


>FB|FBgn0051155 [details] [associations]
            symbol:Rpb7 "Rpb7" species:7227 "Drosophila melanogaster"
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase II, core
            complex" evidence=ISS;IPI] [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=ISS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR003029
            InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876 EMBL:AE014297
            GO:GO:0003723 GO:GO:0006366 Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 GO:GO:0003899
            KO:K03015 GO:GO:0005665 eggNOG:COG1095 OMA:TRVDAND
            Gene3D:3.30.1490.120 SUPFAM:SSF88798 GeneTree:ENSGT00390000008975
            EMBL:BT023312 EMBL:BT029405 RefSeq:NP_731983.1 UniGene:Dm.35954
            UniGene:Dm.4143 SMR:Q9VFB5 STRING:Q9VFB5 EnsemblMetazoa:FBtr0083137
            GeneID:261631 KEGG:dme:Dmel_CG31155 UCSC:CG31155-RA CTD:261631
            FlyBase:FBgn0051155 InParanoid:Q9VFB5 OrthoDB:EOG46Q58R
            GenomeRNAi:261631 NextBio:843782 Uniprot:Q9VFB5
        Length = 173

 Score = 118 (46.6 bits), Expect = 4.5e-07, P = 4.5e-07
 Identities = 28/102 (27%), Positives = 55/102 (53%)

Query:    38 EIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSH 97
             +I  G + PG+G   + VK++ +VFRPF GE++ A +K+ +  G+   +G     ++  H
Sbjct:    53 QIGSGVIQPGQGFVVYPVKYKAIVFRPFKGEVLDAVVKQINKVGMFAEIGPLS-CFISHH 111

Query:    98 LLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 139
              +P+  +  P+  G       ++  D   VI G D+I+ +++
Sbjct:   112 SIPADMQFCPN--GNPPC---YKSKDEDVVISGEDKIRLKIV 148


>POMBASE|SPACUNK4.06c [details] [associations]
            symbol:rpb7 "DNA-directed RNA polymerase complex II
            subunit Rpb7" species:4896 "Schizosaccharomyces pombe" [GO:0003723
            "RNA binding" evidence=ISM] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
            "cytosol" evidence=IDA] [GO:0006367 "transcription initiation from
            RNA polymerase II promoter" evidence=TAS] [GO:0016591 "DNA-directed
            RNA polymerase II, holoenzyme" evidence=IC] [GO:0031123 "RNA 3'-end
            processing" evidence=IPI] [GO:0097394 "telomeric RNA transcription
            from RNA pol II promoter" evidence=IMP] [GO:0003899 "DNA-directed
            RNA polymerase activity" evidence=IDA] InterPro:IPR003029
            InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876 PomBase:SPACUNK4.06c
            GO:GO:0005829 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003723
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006367
            GO:GO:0016591 InterPro:IPR022967 SMART:SM00316 GO:GO:0003899
            KO:K03015 GO:GO:0031123 PDB:3H0G PDBsum:3H0G eggNOG:COG1095
            HOGENOM:HOG000158201 OMA:TRVDAND Gene3D:3.30.1490.120
            SUPFAM:SSF88798 EMBL:D89594 EMBL:D86554 EMBL:AF027821 EMBL:AF055916
            PIR:T39254 RefSeq:XP_001713072.1 ProteinModelPortal:O14459
            IntAct:O14459 MINT:MINT-1213963 STRING:O14459
            EnsemblFungi:SPACUNK4.06c.1 GeneID:2542097 KEGG:spo:SPACUNK4.06c
            OrthoDB:EOG4JT3FQ EvolutionaryTrace:O14459 NextBio:20803169
            GO:GO:0097394 Uniprot:O14459
        Length = 172

 Score = 115 (45.5 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 24/70 (34%), Positives = 43/70 (61%)

Query:    38 EIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSH 97
             +I+ G V PG+G +   VK+R V++RPF GE++ A +   +  G   ++G   +++V SH
Sbjct:    56 DIDKGRVVPGQGFAEFEVKYRAVLWRPFRGEVVDAIVTTVNKMGFFANIGPL-NVFVSSH 114

Query:    98 LLPSPSRSEP 107
             L+P   + +P
Sbjct:   115 LVPPDMKFDP 124


>UNIPROTKB|F8WDV1 [details] [associations]
            symbol:POLR3H "DNA-directed RNA polymerase III subunit
            RPC8" species:9606 "Homo sapiens" [GO:0003899 "DNA-directed RNA
            polymerase activity" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] InterPro:IPR005576 Pfam:PF03876
            GO:GO:0006351 EMBL:AL023553 GO:GO:0003899 Gene3D:3.30.1490.120
            SUPFAM:SSF88798 HGNC:HGNC:30349 IPI:IPI00604415
            ProteinModelPortal:F8WDV1 SMR:F8WDV1 PRIDE:F8WDV1
            Ensembl:ENST00000431534 ArrayExpress:F8WDV1 Bgee:F8WDV1
            Uniprot:F8WDV1
        Length = 123

 Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 21/50 (42%), Positives = 31/50 (62%)

Query:    38 EIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 87
             ++E  +V+PG+GAS   V FR VVF PF+ EI+  K+K     G+  + G
Sbjct:    53 KLEDAYVFPGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHGNSG 102


>SGD|S000002812 [details] [associations]
            symbol:RPB7 "RNA polymerase II subunit B16" species:4932
            "Saccharomyces cerevisiae" [GO:0003727 "single-stranded RNA
            binding" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
            evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0003899 "DNA-directed
            RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0045948 "positive regulation of
            translational initiation" evidence=IMP] [GO:0031369 "translation
            initiation factor binding" evidence=IPI] [GO:0006366 "transcription
            from RNA polymerase II promoter" evidence=IGI] [GO:0003697
            "single-stranded DNA binding" evidence=IMP;IDA] [GO:0006367
            "transcription initiation from RNA polymerase II promoter"
            evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
            evidence=IEA;IDA] [GO:0060213 "positive regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=IMP]
            [GO:0000291 "nuclear-transcribed mRNA catabolic process,
            exonucleolytic" evidence=IGI] [GO:0003968 "RNA-directed RNA
            polymerase activity" evidence=IDA] [GO:0005665 "DNA-directed RNA
            polymerase II, core complex" evidence=IDA] InterPro:IPR003029
            InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876 SGD:S000002812
            GO:GO:0003727 EMBL:BK006938 GO:GO:0003697 GO:GO:0000932
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006367
            EMBL:U32274 GO:GO:0045948 GO:GO:0060213 InterPro:IPR022967
            SMART:SM00316 GO:GO:0003899 GO:GO:0000291 RefSeq:NP_010692.3
            GeneID:852013 KEGG:sce:YDR404C KO:K03015 GO:GO:0005665 KO:K00601
            RefSeq:NP_010696.3 GeneID:852017 KEGG:sce:YDR408C PDB:1NT9 PDB:1PQV
            PDB:1WCM PDB:1Y1V PDB:1Y1W PDB:1Y1Y PDB:1Y77 PDB:2B63 PDB:2B8K
            PDB:2JA5 PDB:2JA6 PDB:2JA7 PDB:2JA8 PDB:2R7Z PDB:2R92 PDB:2R93
            PDB:2VUM PDB:3FKI PDB:3H3V PDB:3HOU PDB:3HOV PDB:3HOW PDB:3HOX
            PDB:3HOY PDB:3HOZ PDB:3I4M PDB:3I4N PDB:3K1F PDB:3PO2 PDB:3PO3
            PDB:3QT1 PDB:4A3B PDB:4A3C PDB:4A3D PDB:4A3E PDB:4A3F PDB:4A3G
            PDB:4A3I PDB:4A3J PDB:4A3K PDB:4A3L PDB:4A3M PDB:4A93 PDB:4BBR
            PDB:4BBS PDBsum:1NT9 PDBsum:1PQV PDBsum:1WCM PDBsum:1Y1V
            PDBsum:1Y1W PDBsum:1Y1Y PDBsum:1Y77 PDBsum:2B63 PDBsum:2B8K
            PDBsum:2JA5 PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8 PDBsum:2R7Z
            PDBsum:2R92 PDBsum:2R93 PDBsum:2VUM PDBsum:3FKI PDBsum:3H3V
            PDBsum:3HOU PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX PDBsum:3HOY
            PDBsum:3HOZ PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F PDBsum:3PO2
            PDBsum:3PO3 PDBsum:3QT1 PDBsum:4A3B PDBsum:4A3C PDBsum:4A3D
            PDBsum:4A3E PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I PDBsum:4A3J
            PDBsum:4A3K PDBsum:4A3L PDBsum:4A3M PDBsum:4A93 PDBsum:4BBR
            PDBsum:4BBS PDB:1Y14 PDBsum:1Y14 eggNOG:COG1095
            HOGENOM:HOG000158201 Gene3D:3.30.1490.120 SUPFAM:SSF88798
            GeneTree:ENSGT00390000008975 OMA:HAIGSIK OrthoDB:EOG4JT3FQ
            EMBL:S59775 PIR:S30140 ProteinModelPortal:P34087 SMR:P34087
            DIP:DIP-725N IntAct:P34087 MINT:MINT-539630 STRING:P34087
            PaxDb:P34087 PeptideAtlas:P34087 EnsemblFungi:YDR404C CYGD:YDR404c
            EvolutionaryTrace:P34087 NextBio:970216 Genevestigator:P34087
            GermOnline:YDR404C Uniprot:P34087
        Length = 171

 Score = 112 (44.5 bits), Expect = 7.4e-06, P = 7.4e-06
 Identities = 22/73 (30%), Positives = 43/73 (58%)

Query:    28 LELENVFLDKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 87
             L+ +N+    +I+ G + P +G++   VK+R VVF+PF GE++   +     +G  + +G
Sbjct:    49 LDYDNI----DIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVG 104

Query:    88 FFEDIYVPSHLLP 100
               + ++V  HL+P
Sbjct:   105 PMK-VFVTKHLMP 116


>UNIPROTKB|Q5E9B8 [details] [associations]
            symbol:POLR2G "DNA-directed RNA polymerase II subunit RPB7"
            species:9913 "Bos taurus" [GO:0005665 "DNA-directed RNA polymerase
            II, core complex" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0004672 "protein kinase activity" evidence=ISS] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR003029
            InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876 GO:GO:0003723
            GO:GO:0004672 GO:GO:0006366 Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 GO:GO:0003899
            KO:K03015 GO:GO:0005665 eggNOG:COG1095 HOGENOM:HOG000158201
            OMA:TRVDAND Gene3D:3.30.1490.120 SUPFAM:SSF88798 EMBL:BT021002
            IPI:IPI00688959 RefSeq:NP_001015633.1 UniGene:Bt.9092
            ProteinModelPortal:Q5E9B8 SMR:Q5E9B8 STRING:Q5E9B8
            Ensembl:ENSBTAT00000012481 GeneID:526320 KEGG:bta:526320 CTD:5436
            GeneTree:ENSGT00390000008975 HOVERGEN:HBG055233 InParanoid:Q5E9B8
            OrthoDB:EOG451DRZ NextBio:20874346 Uniprot:Q5E9B8
        Length = 172

 Score = 111 (44.1 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 30/101 (29%), Positives = 50/101 (49%)

Query:    39 IEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHL 98
             I  G + PG G   + VK++ +VFRPF GE++ A + + +  GL   +G     ++  H 
Sbjct:    54 IGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHS 112

Query:    99 LPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 139
             +PS    E DP         ++  D   VI   DEI+ +++
Sbjct:   113 IPS--EMEFDPNSNPPC---YKTMDEDIVIQQDDEIRLKIV 148


>UNIPROTKB|P62487 [details] [associations]
            symbol:POLR2G "DNA-directed RNA polymerase II subunit RPB7"
            species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            [GO:0006915 "apoptotic process" evidence=IEA] [GO:0004672 "protein
            kinase activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=IDA;TAS] [GO:0005665 "DNA-directed RNA polymerase II, core
            complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281
            "DNA repair" evidence=TAS] [GO:0006283 "transcription-coupled
            nucleotide-excision repair" evidence=TAS] [GO:0006289
            "nucleotide-excision repair" evidence=TAS] [GO:0006367
            "transcription initiation from RNA polymerase II promoter"
            evidence=TAS] [GO:0006368 "transcription elongation from RNA
            polymerase II promoter" evidence=TAS] [GO:0006370
            "7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
            splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
            [GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
            "positive regulation of viral transcription" evidence=TAS]
            [GO:0006468 "protein phosphorylation" evidence=IDA]
            Reactome:REACT_216 Reactome:REACT_71 InterPro:IPR003029
            InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876 Reactome:REACT_116125
            GO:GO:0006915 GO:GO:0016032 EMBL:CH471076 Reactome:REACT_1675
            GO:GO:0006468 GO:GO:0003723 GO:GO:0006368 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006367 GO:GO:0000398
            Reactome:REACT_1788 GO:GO:0006370 GO:GO:0050434 GO:GO:0006283
            Reactome:REACT_1892 InterPro:IPR022967 SMART:SM00316 GO:GO:0003899
            KO:K03015 GO:GO:0005665 PDB:2C35 PDBsum:2C35 eggNOG:COG1095
            HOGENOM:HOG000158201 OMA:TRVDAND Gene3D:3.30.1490.120
            SUPFAM:SSF88798 CTD:5436 HOVERGEN:HBG055233 OrthoDB:EOG451DRZ
            EMBL:U20659 EMBL:U52427 EMBL:AK312131 EMBL:BC112162 EMBL:BC112164
            IPI:IPI00218895 RefSeq:NP_002687.1 UniGene:Hs.14839
            ProteinModelPortal:P62487 SMR:P62487 DIP:DIP-32663N IntAct:P62487
            MINT:MINT-1033626 STRING:P62487 PhosphoSite:P62487 DMDM:50403601
            PaxDb:P62487 PeptideAtlas:P62487 PRIDE:P62487
            Ensembl:ENST00000301788 GeneID:5436 KEGG:hsa:5436 UCSC:uc001nva.3
            GeneCards:GC11P062529 HGNC:HGNC:9194 MIM:602013 neXtProt:NX_P62487
            PharmGKB:PA33514 InParanoid:P62487 PhylomeDB:P62487
            EvolutionaryTrace:P62487 GenomeRNAi:5436 NextBio:21033
            ArrayExpress:P62487 Bgee:P62487 CleanEx:HS_POLR2G
            Genevestigator:P62487 GermOnline:ENSG00000168002 Uniprot:P62487
        Length = 172

 Score = 111 (44.1 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 30/101 (29%), Positives = 50/101 (49%)

Query:    39 IEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHL 98
             I  G + PG G   + VK++ +VFRPF GE++ A + + +  GL   +G     ++  H 
Sbjct:    54 IGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHS 112

Query:    99 LPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 139
             +PS    E DP         ++  D   VI   DEI+ +++
Sbjct:   113 IPS--EMEFDPNSNPPC---YKTMDEDIVIQQDDEIRLKIV 148


>UNIPROTKB|I3LJZ9 [details] [associations]
            symbol:POLR2G "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
            complex" evidence=IEA] [GO:0004672 "protein kinase activity"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR003029 InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876
            GO:GO:0003723 GO:GO:0004672 GO:GO:0006366 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
            GO:GO:0003899 KO:K03015 GO:GO:0005665 OMA:TRVDAND
            Gene3D:3.30.1490.120 SUPFAM:SSF88798 GeneTree:ENSGT00390000008975
            EMBL:FP312617 RefSeq:XP_003353863.1 ProteinModelPortal:I3LJZ9
            SMR:I3LJZ9 Ensembl:ENSSSCT00000022560 GeneID:100620235
            KEGG:ssc:100620235 Uniprot:I3LJZ9
        Length = 172

 Score = 111 (44.1 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 30/101 (29%), Positives = 50/101 (49%)

Query:    39 IEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHL 98
             I  G + PG G   + VK++ +VFRPF GE++ A + + +  GL   +G     ++  H 
Sbjct:    54 IGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHS 112

Query:    99 LPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 139
             +PS    E DP         ++  D   VI   DEI+ +++
Sbjct:   113 IPS--EMEFDPNSNPPC---YKTMDEDIVIQQDDEIRLKIV 148


>MGI|MGI:1914960 [details] [associations]
            symbol:Polr2g "polymerase (RNA) II (DNA directed)
            polypeptide G" species:10090 "Mus musculus" [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005665 "DNA-directed RNA polymerase II, core complex"
            evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISO] [GO:0006468 "protein phosphorylation"
            evidence=ISO] [GO:0016740 "transferase activity" evidence=IEA]
            [GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
            InterPro:IPR003029 InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876
            MGI:MGI:1914960 GO:GO:0006915 GO:GO:0003723 GO:GO:0004672
            GO:GO:0006366 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR022967 SMART:SM00316 GO:GO:0003899 KO:K03015
            GO:GO:0005665 eggNOG:COG1095 HOGENOM:HOG000158201 OMA:TRVDAND
            Gene3D:3.30.1490.120 SUPFAM:SSF88798 CTD:5436
            GeneTree:ENSGT00390000008975 HOVERGEN:HBG055233 OrthoDB:EOG451DRZ
            EMBL:AK010687 EMBL:AK011627 EMBL:AK013134 EMBL:AK017473
            EMBL:BC005580 EMBL:BC055278 IPI:IPI00263106 RefSeq:NP_080605.1
            UniGene:Mm.22117 ProteinModelPortal:P62488 SMR:P62488 STRING:P62488
            PhosphoSite:P62488 REPRODUCTION-2DPAGE:P62488 PaxDb:P62488
            PRIDE:P62488 Ensembl:ENSMUST00000096261 GeneID:67710 KEGG:mmu:67710
            UCSC:uc008gna.1 InParanoid:P62488 NextBio:325333 Bgee:P62488
            CleanEx:MM_POLR2G Genevestigator:P62488
            GermOnline:ENSMUSG00000071662 Uniprot:P62488
        Length = 172

 Score = 111 (44.1 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 30/101 (29%), Positives = 50/101 (49%)

Query:    39 IEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHL 98
             I  G + PG G   + VK++ +VFRPF GE++ A + + +  GL   +G     ++  H 
Sbjct:    54 IGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHS 112

Query:    99 LPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 139
             +PS    E DP         ++  D   VI   DEI+ +++
Sbjct:   113 IPS--EMEFDPNSNPPC---YKTMDEDIVIQQDDEIRLKIV 148


>RGD|621284 [details] [associations]
            symbol:Polr2g "polymerase (RNA) II (DNA directed) polypeptide G"
            species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0004672
            "protein kinase activity" evidence=ISO;ISS] [GO:0005575
            "cellular_component" evidence=ND] [GO:0005634 "nucleus"
            evidence=ISO;ISS] [GO:0005665 "DNA-directed RNA polymerase II, core
            complex" evidence=ISO;ISS] [GO:0006366 "transcription from RNA
            polymerase II promoter" evidence=ISO;ISS] [GO:0006468 "protein
            phosphorylation" evidence=ISO] [GO:0006915 "apoptotic process"
            evidence=IEP] InterPro:IPR003029 InterPro:IPR005576 Pfam:PF00575
            Pfam:PF03876 RGD:621284 GO:GO:0006915 GO:GO:0003723 GO:GO:0004672
            GO:GO:0006366 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR022967 SMART:SM00316 GO:GO:0003899 KO:K03015
            GO:GO:0005665 eggNOG:COG1095 HOGENOM:HOG000158201 OMA:TRVDAND
            Gene3D:3.30.1490.120 SUPFAM:SSF88798 CTD:5436
            GeneTree:ENSGT00390000008975 HOVERGEN:HBG055233 OrthoDB:EOG451DRZ
            EMBL:Z71925 EMBL:BC060550 EMBL:BC060595 IPI:IPI00326378
            RefSeq:NP_446400.1 UniGene:Rn.106248 ProteinModelPortal:P62489
            SMR:P62489 STRING:P62489 PRIDE:P62489 Ensembl:ENSRNOT00000026313
            GeneID:117017 KEGG:rno:117017 UCSC:RGD:621284 InParanoid:P62489
            NextBio:619759 Genevestigator:P62489 GermOnline:ENSRNOG00000019439
            Uniprot:P62489
        Length = 172

 Score = 111 (44.1 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 30/101 (29%), Positives = 50/101 (49%)

Query:    39 IEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHL 98
             I  G + PG G   + VK++ +VFRPF GE++ A + + +  GL   +G     ++  H 
Sbjct:    54 IGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHS 112

Query:    99 LPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 139
             +PS    E DP         ++  D   VI   DEI+ +++
Sbjct:   113 IPS--EMEFDPNSNPPC---YKTMDEDIVIQQDDEIRLKIV 148


>ZFIN|ZDB-GENE-030131-2808 [details] [associations]
            symbol:polr2gl "polymerase (RNA) II (DNA directed)
            polypeptide G-like" species:7955 "Danio rerio" [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
            complex" evidence=ISS] [GO:0004672 "protein kinase activity"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR003029 InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876
            ZFIN:ZDB-GENE-030131-2808 GO:GO:0006468 GO:GO:0003723 GO:GO:0006366
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR022967 SMART:SM00316 GO:GO:0003899 KO:K03015
            GO:GO:0005665 eggNOG:COG1095 HOGENOM:HOG000158201 OMA:TRVDAND
            Gene3D:3.30.1490.120 SUPFAM:SSF88798 GeneTree:ENSGT00390000008975
            HOVERGEN:HBG055233 OrthoDB:EOG451DRZ EMBL:BC045299 IPI:IPI00493928
            RefSeq:NP_955963.1 UniGene:Dr.2883 ProteinModelPortal:Q7ZW41
            SMR:Q7ZW41 STRING:Q7ZW41 PRIDE:Q7ZW41 Ensembl:ENSDART00000078557
            GeneID:324088 KEGG:dre:324088 CTD:324088 InParanoid:Q7ZW41
            NextBio:20808583 Bgee:Q7ZW41 Uniprot:Q7ZW41
        Length = 172

 Score = 111 (44.1 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 30/101 (29%), Positives = 50/101 (49%)

Query:    39 IEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHL 98
             I  G + PG G   + VK++ +VFRPF GE++ A + + +  GL   +G     ++  H 
Sbjct:    54 IGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHS 112

Query:    99 LPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 139
             +PS    E DP         ++  D   VI   DEI+ +++
Sbjct:   113 IPS--EMEFDPNSNPPC---YKTVDEDVVIQQDDEIRLKIV 148


>CGD|CAL0004143 [details] [associations]
            symbol:RPB7 species:5476 "Candida albicans" [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA;IGI;ISS]
            [GO:0005665 "DNA-directed RNA polymerase II, core complex"
            evidence=IGI;ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=IGI;ISS] [GO:0042493 "response to drug"
            evidence=IMP] [GO:0005829 "cytosol" evidence=IEA] [GO:0000932
            "cytoplasmic mRNA processing body" evidence=IEA] [GO:0031123 "RNA
            3'-end processing" evidence=IEA] [GO:0000291 "nuclear-transcribed
            mRNA catabolic process, exonucleolytic" evidence=IEA] [GO:0060213
            "positive regulation of nuclear-transcribed mRNA poly(A) tail
            shortening" evidence=IEA] [GO:0045948 "positive regulation of
            translational initiation" evidence=IEA] [GO:0006367 "transcription
            initiation from RNA polymerase II promoter" evidence=IEA]
            [GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0031369
            "translation initiation factor binding" evidence=IEA] [GO:0003968
            "RNA-directed RNA polymerase activity" evidence=IEA] [GO:0003727
            "single-stranded RNA binding" evidence=IEA] InterPro:IPR003029
            InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876 PROSITE:PS50126
            CGD:CAL0004143 GO:GO:0042493 GO:GO:0003723 GO:GO:0006366
            Gene3D:2.40.50.140 InterPro:IPR012340 EMBL:AACQ01000045
            EMBL:AACQ01000042 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
            GO:GO:0003899 KO:K03015 GO:GO:0005665 eggNOG:COG1095
            Gene3D:3.30.1490.120 SUPFAM:SSF88798 RefSeq:XP_718170.1
            RefSeq:XP_718437.1 ProteinModelPortal:Q5A8Y7 SMR:Q5A8Y7
            STRING:Q5A8Y7 GeneID:3639930 GeneID:3640221 KEGG:cal:CaO19.10855
            KEGG:cal:CaO19.3347 Uniprot:Q5A8Y7
        Length = 173

 Score = 101 (40.6 bits), Expect = 0.00044, P = 0.00044
 Identities = 21/70 (30%), Positives = 38/70 (54%)

Query:    38 EIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSH 97
             ++  G + P  G +   VK+R VV++PF GE++ A +   +  G    +G    ++V +H
Sbjct:    55 DVGKGRIIPSTGMAEFEVKYRAVVWKPFKGEVVDAVVTTVNKMGFFADVGPLS-VFVSTH 113

Query:    98 LLPSPSRSEP 107
             L+PS  +  P
Sbjct:   114 LIPSDMKFNP 123


>UNIPROTKB|Q5A8Y7 [details] [associations]
            symbol:RPB7 "Likely RNA Pol II core complex subunit"
            species:237561 "Candida albicans SC5314" [GO:0003899 "DNA-directed
            RNA polymerase activity" evidence=IGI] [GO:0005665 "DNA-directed
            RNA polymerase II, core complex" evidence=IGI] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=IGI]
            [GO:0042493 "response to drug" evidence=IMP] InterPro:IPR003029
            InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876 PROSITE:PS50126
            CGD:CAL0004143 GO:GO:0042493 GO:GO:0003723 GO:GO:0006366
            Gene3D:2.40.50.140 InterPro:IPR012340 EMBL:AACQ01000045
            EMBL:AACQ01000042 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
            GO:GO:0003899 KO:K03015 GO:GO:0005665 eggNOG:COG1095
            Gene3D:3.30.1490.120 SUPFAM:SSF88798 RefSeq:XP_718170.1
            RefSeq:XP_718437.1 ProteinModelPortal:Q5A8Y7 SMR:Q5A8Y7
            STRING:Q5A8Y7 GeneID:3639930 GeneID:3640221 KEGG:cal:CaO19.10855
            KEGG:cal:CaO19.3347 Uniprot:Q5A8Y7
        Length = 173

 Score = 101 (40.6 bits), Expect = 0.00044, P = 0.00044
 Identities = 21/70 (30%), Positives = 38/70 (54%)

Query:    38 EIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSH 97
             ++  G + P  G +   VK+R VV++PF GE++ A +   +  G    +G    ++V +H
Sbjct:    55 DVGKGRIIPSTGMAEFEVKYRAVVWKPFKGEVVDAVVTTVNKMGFFADVGPLS-VFVSTH 113

Query:    98 LLPSPSRSEP 107
             L+PS  +  P
Sbjct:   114 LIPSDMKFNP 123


>WB|WBGene00021845 [details] [associations]
            symbol:rpb-7 species:6239 "Caenorhabditis elegans"
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0003899 "DNA-directed
            RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0004601 "peroxidase activity"
            evidence=IEA] [GO:0055114 "oxidation-reduction process"
            evidence=IEA] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0009790 "embryo development"
            evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
            evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
            "nematode larval development" evidence=IMP] [GO:0000003
            "reproduction" evidence=IMP] [GO:0006898 "receptor-mediated
            endocytosis" evidence=IMP] [GO:0043652 "engulfment of apoptotic
            cell" evidence=IMP] InterPro:IPR003029 InterPro:IPR005576
            Pfam:PF00575 Pfam:PF03876 PROSITE:PS50126 GO:GO:0009792
            GO:GO:0006898 GO:GO:0040007 GO:GO:0002119 GO:GO:0000003
            GO:GO:0006351 GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 GO:GO:0043652 InterPro:IPR022967 SMART:SM00316
            GO:GO:0003899 GO:GO:0001703 KO:K03015 eggNOG:COG1095
            HOGENOM:HOG000158201 OMA:TRVDAND Gene3D:3.30.1490.120
            SUPFAM:SSF88798 GeneTree:ENSGT00390000008975 EMBL:FO081636
            RefSeq:NP_491093.1 HSSP:Q57840 ProteinModelPortal:Q9N3C9 SMR:Q9N3C9
            STRING:Q9N3C9 PaxDb:Q9N3C9 EnsemblMetazoa:Y54E10BR.6 GeneID:171877
            KEGG:cel:CELE_Y54E10BR.6 UCSC:Y54E10BR.6 CTD:171877
            WormBase:Y54E10BR.6 InParanoid:Q9N3C9 NextBio:873067 Uniprot:Q9N3C9
        Length = 197

 Score = 100 (40.3 bits), Expect = 0.00099, P = 0.00099
 Identities = 26/98 (26%), Positives = 49/98 (50%)

Query:    42 GFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPS 101
             G + PG G   + V+++ +VFRPF G+++   + + +  G+   +G     ++  H +P 
Sbjct:    80 GLIQPGRGFVIYPVRYKAIVFRPFKGQVVDGVVTQVNKVGIFCDIGPLS-CFISRHCIP- 137

Query:   102 PSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 139
             P   E DP      K  ++  D   VI   DEI+ +++
Sbjct:   138 PDM-EFDPNSE---KPCYKTNDEANVIRNDDEIRVKLI 171


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.141   0.437    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      177       165   0.00093  107 3  11 22  0.41    32
                                                     30  0.45    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  31
  No. of states in DFA:  568 (60 KB)
  Total size of DFA:  151 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.34u 0.22s 15.56t   Elapsed:  00:00:00
  Total cpu time:  15.35u 0.22s 15.57t   Elapsed:  00:00:00
  Start:  Sat May 11 02:02:54 2013   End:  Sat May 11 02:02:54 2013
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with AT1G06790 AT1G06790 AT1G06790	protein from Arabidopsis thaliana	3.7e-55
BLAST match view associations BLAST with polr3h polr3h polr3h polymerase (RNA) III (DNA directed) polypeptide H	gene_product from Danio rerio	1.1e-20
BLAST match view associations BLAST with Polr3h Polr3h Polr3h polymerase (RNA) III (DNA directed) polypeptide H	protein from Mus musculus	3.5e-20
BLAST match view associations BLAST with Polr3h Polr3h Polr3h polymerase (RNA) III (DNA directed) polypeptide H	gene from Rattus norvegicus	3.5e-20
BLAST match view associations BLAST with POLR3H POLR3H POLR3H DNA-directed RNA polymerase III subunit RPC8	protein from Bos taurus	5.7e-20
BLAST match view associations BLAST with POLR3H POLR3H POLR3H DNA-directed RNA polymerase III subunit RPC8	protein from Bos taurus	5.7e-20
BLAST match view associations BLAST with POLR3H POLR3H POLR3H DNA-directed RNA polymerase III subunit RPC8	protein from Homo sapiens	1.5e-19
BLAST match view associations BLAST with POLR3H POLR3H POLR3H Uncharacterized protein	protein from Sus scrofa	1.5e-19
BLAST match view associations BLAST with POLR3H POLR3H POLR3H Uncharacterized protein	protein from Canis lupus familiaris	2.5e-19
BLAST match view associations BLAST with rpc-25 rpc-25 rpc-25	gene from Caenorhabditis elegans	5.1e-19
BLAST match view associations BLAST with RPC25 RPC25 RPC25 RNA polymerase III subunit C25	gene from Saccharomyces cerevisiae	1.7e-18
BLAST match view associations BLAST with POLR3H POLR3H POLR3H Uncharacterized protein	protein from Gallus gallus	1.7e-18
BLAST match view associations BLAST with CG7339 CG7339 CG7339	protein from Drosophila melanogaster	2.1e-18
BLAST match view associations BLAST with rpc25-2 rpc25-2 rpc25-2 RNA polymerase III subunit	gene from Dictyostelium discoideum	2.7e-18
BLAST match view associations BLAST with rpc25-1 rpc25-1 rpc25-1 RNA polymerase III subunit	gene from Dictyostelium discoideum	2.7e-18
BLAST match view associations BLAST with orf19.443 orf19.443 orf19.443	gene_product from Candida albicans	1.1e-16
BLAST match view associations BLAST with Rpb7 Rpb7 Rpb7	protein from Drosophila melanogaster	4.5e-07
BLAST match view associations BLAST with POLR3H POLR3H POLR3H DNA-directed RNA polymerase III subunit RPC8	protein from Homo sapiens	3.4e-06
BLAST match view associations BLAST with RPB7 RPB7 RPB7 RNA polymerase II subunit B16	gene from Saccharomyces cerevisiae	7.4e-06
BLAST match view associations BLAST with POLR2G POLR2G POLR2G DNA-directed RNA polymerase II subunit RPB7	protein from Bos taurus	1.1e-05
BLAST match view associations BLAST with POLR2G POLR2G POLR2G DNA-directed RNA polymerase II subunit RPB7	protein from Homo sapiens	1.1e-05
BLAST match view associations BLAST with POLR2G POLR2G POLR2G Uncharacterized protein	protein from Sus scrofa	1.1e-05
BLAST match view associations BLAST with Polr2g Polr2g Polr2g polymerase (RNA) II (DNA directed) polypeptide G	protein from Mus musculus	1.1e-05
BLAST match view associations BLAST with Polr2g Polr2g Polr2g polymerase (RNA) II (DNA directed) polypeptide G	gene from Rattus norvegicus	1.1e-05
BLAST match view associations BLAST with polr2gl polr2gl polr2gl polymerase (RNA) II (DNA directed) polypeptide G-like	gene_product from Danio rerio	1.1e-05
BLAST match view associations BLAST with RPB7 RPB7 RPB7	gene_product from Candida albicans	0.00044
BLAST match view associations BLAST with RPB7 RPB7 RPB7 Likely RNA Pol II core complex subunit	protein from Candida albicans SC5314	0.00044
BLAST match view associations BLAST with rpb-7 rpb-7 rpb-7	gene from Caenorhabditis elegans	0.00099