BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030459
(177 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RYM|A Chain A, Structure Of The Group Ii Intron Splicing Factor Crs2
Length = 212
Score = 176 bits (445), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 83/172 (48%), Positives = 115/172 (66%)
Query: 1 MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
M+D A +GI+MNT K+ G G +G+ PVL+ KPQ+YMN SGE+ GPLAAYY++PL
Sbjct: 41 MVDRIAAEEGITMNTEQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQVPLR 100
Query: 61 RVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
+L+ +DD LP GV ++V+ + G REF RL IGIG PPG+MDP+
Sbjct: 101 HILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPR 160
Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRL 172
AFLLQKF++ R +IDTAL++GV+ ++ L+ KG + S FN +QKYK R+
Sbjct: 161 AFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSGSTERFNLVQKYKFHRV 212
>pdb|1RYB|A Chain A, Crystal Structure Of The Chloroplast Group Ii Intron
Splicing Factor Crs2
Length = 205
Score = 171 bits (432), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 111/165 (67%)
Query: 1 MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
M+D A +GI+MNT+ K+ G G +G+ PVL+ KPQ+YMN SGE+ GPLAAYY++PL
Sbjct: 41 MVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQVPLR 100
Query: 61 RVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
+L+ +DD LP GV ++V+ + G REF RL IGIG PPG+MDP+
Sbjct: 101 HILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPR 160
Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQ 165
AFLLQKF++ R +IDTAL++GV+ ++ L+ KG + S FN +Q
Sbjct: 161 AFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSGSTERFNLVQ 205
>pdb|1RYN|A Chain A, Structure Of The Chloroplast Group Ii Intron Splicing
Factor Crs2
Length = 202
Score = 170 bits (430), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 80/166 (48%), Positives = 111/166 (66%)
Query: 1 MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
M+D A +GI+MNT K+ G G +G+ PVL+ KPQ+YMN SGE+ GPLAAYY++PL
Sbjct: 29 MVDRIAAEEGITMNTNQFKSLLGTGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQVPLR 88
Query: 61 RVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
+L+ +DD LP GV ++V+ + G REF RL IGIG PPG+MDP+
Sbjct: 89 HILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPR 148
Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQK 166
AFLLQKF++ R +IDTAL++GV+ ++ L+ KG + S FN +QK
Sbjct: 149 AFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSGSTERFNLVQK 194
>pdb|2LGJ|A Chain A, Solution Structure Of Mspth
Length = 191
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 86/154 (55%), Gaps = 6/154 (3%)
Query: 16 VHCK--ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPC 73
VH K A G + V+LAKP+ YMN SG GPLA +Y +P +++V HD++ +
Sbjct: 42 VHKKSGAEVVTGRLAGTSVVLAKPRCYMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDF 101
Query: 74 GVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARE 133
G +SV + G + F R+RIG+GRPPG+ DP AF+L+ F A R
Sbjct: 102 GRIRLKLGGGEGGHNGLRSVASAL-GTKNFHRVRIGVGRPPGRKDPAAFVLENFTAAERA 160
Query: 134 RIDTALQEGVEVLKLLLSKGLTESARHFNTIQKY 167
+ T +++ + +LL+++GL E A+ NT+ +
Sbjct: 161 EVPTIVEQAADATELLIAQGL-EPAQ--NTVHAW 191
>pdb|3KJZ|A Chain A, Crystal Structure Of Native Peptidyl-Trna Hydrolase From
Mycobacterium Smegmatis
pdb|3KK0|A Chain A, Crystal Structure Of Partially Folded Intermediate State
Of Peptidyl- Trna Hydrolase From Mycobacterium Smegmatis
pdb|3P2J|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Mycobacterium Smegmatis At 2.2 A Resolution
Length = 191
Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 85/154 (55%), Gaps = 6/154 (3%)
Query: 16 VHCK--ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPC 73
VH K A G + V+LAKP+ MN SG GPLA +Y +P +++V HD++ +
Sbjct: 42 VHKKSGAEVVTGRLAGTTVVLAKPRISMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDF 101
Query: 74 GVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARE 133
G +SV + G + F R+RIG+GRPPG+ DP AF+L+ F + R
Sbjct: 102 GRIRLKLGGGEGGHNGLRSVASAL-GTKNFHRVRIGVGRPPGRKDPAAFVLENFTSAERA 160
Query: 134 RIDTALQEGVEVLKLLLSKGLTESARHFNTIQKY 167
+ T +++ + +LL+++GL E A+ NT+ +
Sbjct: 161 EVPTIVEQAADATELLIAQGL-EPAQ--NTVHAW 191
>pdb|2JRC|A Chain A, Solution Structure Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis H37rv
Length = 204
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 74/137 (54%), Gaps = 4/137 (2%)
Query: 32 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXK 91
++LAKP+ YMN SG GPLA +Y + ++V HDD+ L G +
Sbjct: 60 LVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLR 119
Query: 92 SVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLS 151
SV+ G ++F R+RIGIGRPPG+ DP AF+L+ F R + T ++ + +LL+
Sbjct: 120 SVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIE 178
Query: 152 KGLTESARHFNTIQKYK 168
+G+ + N + +K
Sbjct: 179 QGMEPAQ---NRVHAWK 192
>pdb|2Z2I|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis
pdb|2Z2J|A Chain A, Crystal Structure Of Peptidyl-trna Hydrolase From
Mycobacterium Tuberculosis
pdb|2Z2J|B Chain B, Crystal Structure Of Peptidyl-trna Hydrolase From
Mycobacterium Tuberculosis
pdb|2Z2K|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis
pdb|3TCK|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis - Form 4
pdb|3TCN|A Chain A, Crystal Structures Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis - Form 2 Grown In Presence Of
Pentaglycine
pdb|3TCN|B Chain B, Crystal Structures Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis - Form 2 Grown In Presence Of
Pentaglycine
pdb|3TD2|A Chain A, Crystal Structures Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis - Form 5
pdb|3TD6|A Chain A, Peptidyl-Trna Hydrolase From Mycobacterium Tuberculosis
From Trigonal Partially Dehydrated Crystal
Length = 191
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 69/123 (56%), Gaps = 1/123 (0%)
Query: 32 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXK 91
++LAKP+ YMN SG GPLA +Y + ++V HDD+ L G +
Sbjct: 60 LVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLR 119
Query: 92 SVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLS 151
SV+ G ++F R+RIGIGRPPG+ DP AF+L+ F R + T ++ + +LL+
Sbjct: 120 SVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIE 178
Query: 152 KGL 154
+G+
Sbjct: 179 QGM 181
>pdb|3VJR|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Escherichia Coli In Complex With The
Cca-Acceptor-T[psi]c Domain Of Trna
pdb|3VJR|C Chain C, Crystal Structure Of Peptidyl-Trna Hydrolase From
Escherichia Coli In Complex With The
Cca-Acceptor-T[psi]c Domain Of Trna
Length = 197
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 69/139 (49%)
Query: 27 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXX 86
+G V L P T+MNLSG++ +A+++++ + +LV HD++ LP GV
Sbjct: 57 LGGEDVRLLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGG 116
Query: 87 XXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVL 146
K +++ N F RLRIGIG P + F+L K ++ ID A+ E
Sbjct: 117 HNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCT 176
Query: 147 KLLLSKGLTESARHFNTIQ 165
++ + GLT++ + +
Sbjct: 177 EMWFTDGLTKATNRLHAFK 195
>pdb|2PTH|A Chain A, Peptidyl-Trna Hydrolase From Escherichia Coli
Length = 193
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 69/139 (49%)
Query: 27 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXX 86
+G V L P T+MNLSG++ +A+++++ + +LV HD++ LP GV
Sbjct: 53 LGGEDVRLLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGG 112
Query: 87 XXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVL 146
K +++ N F RLRIGIG P + F+L K ++ ID A+ E
Sbjct: 113 HNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCT 172
Query: 147 KLLLSKGLTESARHFNTIQ 165
++ + GLT++ + +
Sbjct: 173 EMWFTDGLTKATNRLHAFK 191
>pdb|3OFV|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Escherichia Coli, I222 Crystal Form
pdb|3OFV|B Chain B, Crystal Structure Of Peptidyl-Trna Hydrolase From
Escherichia Coli, I222 Crystal Form
pdb|3OFV|C Chain C, Crystal Structure Of Peptidyl-Trna Hydrolase From
Escherichia Coli, I222 Crystal Form
Length = 211
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 67/131 (51%)
Query: 27 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXX 86
+G V L P T+MNLSG++ +A+++++ + +LV HD++ LP GV
Sbjct: 74 LGGEDVRLLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGG 133
Query: 87 XXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVL 146
K +++ N F RLRIGIG P + F+L K ++ ID A+ E
Sbjct: 134 HNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCT 193
Query: 147 KLLLSKGLTES 157
++ + GLT++
Sbjct: 194 EMWFTDGLTKA 204
>pdb|4FYJ|A Chain A, Crystal Structure Of P. Aeruginosa Peptidyl-Trna Hydrolase
Length = 199
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 9/167 (5%)
Query: 2 IDAFAESQGISMNTVHCKATFGQGFVGD-----APVLLAKPQTYMNLSGESTGPLAAYYK 56
++ A +QG+S+ V + FG VG V L P TYMN SG+S LA +++
Sbjct: 35 VERLAHAQGVSL--VADRKYFG--LVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFR 90
Query: 57 LPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQ 116
+ + +LV HD++ +P GV + ++ F RLR+GIG P
Sbjct: 91 IAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGHS 150
Query: 117 MDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNT 163
++L + +E +DT++ + VL +L+ T + + ++
Sbjct: 151 SLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAGDWTRAMQKLHS 197
>pdb|4DHW|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Pseudomonas Aeruginosa With Adipic Acid At 2.4 Angstrom
Resolution
pdb|4DHW|B Chain B, Crystal Structure Of Peptidyl-Trna Hydrolase From
Pseudomonas Aeruginosa With Adipic Acid At 2.4 Angstrom
Resolution
pdb|4DJJ|A Chain A, Crystal Structure Of The Complex Of Peptidyl-Trna
Hydrolase From Pseudomonas Aeruginosa With Pimelic Acid
At 2.9 Angstrom Resolution
pdb|4DJJ|B Chain B, Crystal Structure Of The Complex Of Peptidyl-Trna
Hydrolase From Pseudomonas Aeruginosa With Pimelic Acid
At 2.9 Angstrom Resolution
pdb|4ERX|A Chain A, Crystal Structure Of The Complex Of Peptidyl-Trna
Hydrolase From Pseudomonas Aeruginosa With Diethylene
Glycol At 2.5 Angstrom Resolution
pdb|4ERX|B Chain B, Crystal Structure Of The Complex Of Peptidyl-Trna
Hydrolase From Pseudomonas Aeruginosa With Diethylene
Glycol At 2.5 Angstrom Resolution
pdb|4FNO|A Chain A, Crystal Structure Of Peptidyl T-Rna Hydrolase From
Pseudomonas Aeruginosa At 2.2 Angstrom Resolution
pdb|4FNO|B Chain B, Crystal Structure Of Peptidyl T-Rna Hydrolase From
Pseudomonas Aeruginosa At 2.2 Angstrom Resolution
Length = 194
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 9/167 (5%)
Query: 2 IDAFAESQGISMNTVHCKATFGQGFVGD-----APVLLAKPQTYMNLSGESTGPLAAYYK 56
++ A +QG+S+ V + FG VG V L P TYMN SG+S LA +++
Sbjct: 29 VERLAHAQGVSL--VADRKYFG--LVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFR 84
Query: 57 LPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQ 116
+ + +LV HD++ +P GV + ++ F RLR+GIG P
Sbjct: 85 IAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGHS 144
Query: 117 MDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNT 163
++L + +E +DT++ + VL +L+ T + + ++
Sbjct: 145 SLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAGDWTRAMQKLHS 191
>pdb|3V2I|A Chain A, Structure Of A Peptidyl-Trna Hydrolase (Pth) From
Burkholderia Thailandensis
Length = 222
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 12/137 (8%)
Query: 32 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXK 91
V L +PQTYMN SG+S LA ++K+ N +LV HD++ LP G K
Sbjct: 79 VHLLEPQTYMNRSGQSVVALAHFFKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLK 138
Query: 92 SVMNNFRGNREFARLRIGIGRPPGQM----------DPKAFLLQKFNAIARERIDTALQE 141
+ + ++++ RLRIGIG P + D F+L+ ++ ID A++
Sbjct: 139 DISAHL-SSQQYWRLRIGIGHPRDMIPESARAGAKPDVANFVLKPPRKEEQDVIDAAIER 197
Query: 142 GVEVLKLLLSKGLTESA 158
+ V+ ++ KG TE A
Sbjct: 198 ALAVMPAVV-KGETERA 213
>pdb|4FOP|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Acinetobacter Baumannii At 1.86 A Resolution
pdb|4FOT|A Chain A, Crystal Structure Of Peptidyl- Trna Hydrolase From
Acinetobacter Baumannii At 2.20 A Resolution
pdb|4HOY|A Chain A, Crystal Structure Of Peptidyl- Trna Hydrolase From
Acinetobacter Baumannii At 1.78 A Resolution
pdb|4IKO|A Chain A, Structure Of Peptidyl- Trna Hydrolase From Acinetobacter
Baumannii At 1.90 A Resolution
Length = 193
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 6/168 (3%)
Query: 2 IDAFAESQGISM-NTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
++ A+ GI++ N G+G + V L P TYMN SG+S P + +Y++
Sbjct: 29 VEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVVPFSKFYQIAPE 88
Query: 61 RVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
+L+ HD++ + GV + ++ + N F RLRIGIG P +
Sbjct: 89 AILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHIGPN--FHRLRIGIGHPGSKERVS 146
Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYK 168
+L K + + +D A+ + +KLL+ + ++ N I YK
Sbjct: 147 GHVLGKAPSNEQSLMDGAIDHALSKVKLLVQGQVPQA---MNQINAYK 191
>pdb|3NEA|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Francisella Tularensis
Length = 207
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 1/123 (0%)
Query: 32 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXK 91
V+L P TYMN SG + +A +YK+ +LV HD++ + G +
Sbjct: 79 VVLVFPTTYMNNSGLAVSKVANFYKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLR 138
Query: 92 SVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLS 151
S+ N G ++ RLRIGIG P + ++L + ++ ID+A+ G+ L +++
Sbjct: 139 SI-NQHLGTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKDIDSAIDNGICFLDDIIN 197
Query: 152 KGL 154
L
Sbjct: 198 YKL 200
>pdb|3S5T|A Chain A, Crystal Structure Of A Member Of Duf3298 Family (Bf2082)
From Bacteroides Fragilis Nctc 9343 At 2.30 A
Resolution
Length = 265
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 12 SMNTVHCKATFGQGFVGDAPVLLAKPQT 39
S+N+ A FG+G++G+ P + K T
Sbjct: 56 SLNSYFIAACFGEGYIGEKPAQVVKEYT 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,598,597
Number of Sequences: 62578
Number of extensions: 156327
Number of successful extensions: 364
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 341
Number of HSP's gapped (non-prelim): 16
length of query: 177
length of database: 14,973,337
effective HSP length: 92
effective length of query: 85
effective length of database: 9,216,161
effective search space: 783373685
effective search space used: 783373685
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)