BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030459
(177 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NLS8|PTHM_ARATH Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana
GN=At5g19830 PE=2 SV=1
Length = 219
Score = 272 bits (695), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 132/171 (77%), Positives = 145/171 (84%)
Query: 1 MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
MID FAES GI MN V+ KA GQGFV D PV+LAKPQTYMNLSGES+GPLAAYYKLPLN
Sbjct: 42 MIDVFAESVGIQMNLVNFKAIMGQGFVADLPVILAKPQTYMNLSGESSGPLAAYYKLPLN 101
Query: 61 RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
RVLV HDDM LPCGVLRL+ GGHG HNGLKSVMN+FRGNREFARLRIGIG+PPGQMDPK
Sbjct: 102 RVLVVHDDMQLPCGVLRLQEKGGHGCHNGLKSVMNHFRGNREFARLRIGIGKPPGQMDPK 161
Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIR 171
AFLLQKF+ ARER+D AL EGV+ LKL+L+K ES R FN QKYKH++
Sbjct: 162 AFLLQKFSMPARERMDKALAEGVDALKLVLAKDFGESWRLFNVEQKYKHLK 212
>sp|Q9M5P4|CRS2_MAIZE Chloroplastic group IIB intron splicing facilitator CRS2,
chloroplastic OS=Zea mays GN=CRS2 PE=1 SV=1
Length = 256
Score = 206 bits (525), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 94/172 (54%), Positives = 128/172 (74%)
Query: 1 MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
M+D A +GI+MNT+ K+ G G +G+ PVL+ KPQ+YMN SGE+ GPLAAYY++PL
Sbjct: 85 MVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQVPLR 144
Query: 61 RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
+L+ +DD LP GVLRL+ GGHG HNGL++V+ + G REF RL IGIG PPG+MDP+
Sbjct: 145 HILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPR 204
Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRL 172
AFLLQKF++ R +IDTAL++GV+ ++ L+ KG + S FN +QKYK R+
Sbjct: 205 AFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSGSTERFNLVQKYKFHRV 256
>sp|Q5ZCL8|CRS2_ORYSJ Chloroplastic group IIB intron splicing facilitator CRS2,
chloroplastic OS=Oryza sativa subsp. japonica
GN=Os01g0132800 PE=2 SV=1
Length = 259
Score = 201 bits (511), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 92/168 (54%), Positives = 124/168 (73%)
Query: 1 MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
M+D A +GI+MNT+ K+ G G +G+ PVLL KPQ+Y+N SGE+ GPLAAYY++PL
Sbjct: 88 MVDRIARDEGITMNTIQSKSLLGIGSIGEVPVLLVKPQSYINYSGEAIGPLAAYYQVPLR 147
Query: 61 RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
+LV +D+M LP GVLRL+ GGHG HNGL++VM +RE RL IGIG PPG+MD +
Sbjct: 148 HILVMYDEMSLPNGVLRLQRKGGHGRHNGLQNVMECLDSSRELPRLSIGIGSPPGKMDTR 207
Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYK 168
AFLLQKF++ R +IDTAL++GV+ ++ L+ KG + S FN +QKYK
Sbjct: 208 AFLLQKFSSEERLQIDTALEQGVDAVRTLVLKGFSGSIERFNLVQKYK 255
>sp|Q8GW64|PTHC_ARATH Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana
GN=At1g18440 PE=2 SV=2
Length = 288
Score = 197 bits (501), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 88/170 (51%), Positives = 129/170 (75%)
Query: 1 MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
M+DA A+++GISMNTV+ KA FG+G +G+ P++LAKPQT+MNLSGES G + ++YK+PL
Sbjct: 118 MVDALADAEGISMNTVNFKALFGKGVIGNIPIMLAKPQTFMNLSGESVGQIVSFYKIPLK 177
Query: 61 RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
+VLV +DD+ LP G LRL GGHGGHNG++S+++ +G+R+F RLRIGIGRPPG+MD
Sbjct: 178 QVLVVYDDLDLPFGKLRLLPKGGHGGHNGMRSIIDRLKGSRDFPRLRIGIGRPPGKMDTA 237
Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHI 170
F+L++FN +E +D Q G+E +++LL +G +SA NT + + +
Sbjct: 238 NFVLRQFNRQEQEELDHTFQTGLEAIRILLLEGFNKSATFVNTRKSMEQL 287
>sp|Q9FKN4|CRS2A_ARATH Chloroplastic group IIB intron splicing facilitator CRS2-A,
chloroplastic OS=Arabidopsis thaliana GN=CRS2A PE=2 SV=1
Length = 246
Score = 193 bits (491), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 94/168 (55%), Positives = 119/168 (70%)
Query: 1 MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
MID A + ISMNT+ KA G G VG+ P+LL KPQ YMN SGES GPLAAYY++PL
Sbjct: 75 MIDHIARATDISMNTIQSKALVGIGSVGEVPILLVKPQGYMNFSGESVGPLAAYYQIPLR 134
Query: 61 RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
+L+ +DDMGL GVLRL+ GGH HNGLK+V + G R + RL IGIG PPG MD K
Sbjct: 135 HILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRLSIGIGNPPGNMDMK 194
Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYK 168
AFLLQKF+ + R+++D L++GVE +K L+ +G ++S FN QKYK
Sbjct: 195 AFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFSDSISRFNLGQKYK 242
>sp|Q5N9Q7|PTHM_ORYSJ Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os01g0693900 PE=2 SV=1
Length = 250
Score = 193 bits (490), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 87/170 (51%), Positives = 126/170 (74%)
Query: 1 MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
MID AE++GIS++++ KA G+G +GDAP++LAKPQT+MN SGES G L +Y+K+PLN
Sbjct: 79 MIDVIAEAEGISLSSMQFKAMVGKGRIGDAPIMLAKPQTFMNASGESVGQLVSYFKIPLN 138
Query: 61 RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
+VLV +DD+ LP LRL GGHGGHNG++S++N+ + NR+F RLRIGIGRPPG+MDP
Sbjct: 139 QVLVMYDDLDLPFAKLRLLPKGGHGGHNGVRSIINHLKQNRDFPRLRIGIGRPPGKMDPA 198
Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHI 170
F+L+ FN +E +D A G+E ++++ +G +SA + NT Q + +
Sbjct: 199 NFVLRPFNRKEQEELDFAFHRGLEAVRIMALEGFNKSATYVNTAQSSEML 248
>sp|Q9LF14|CRS2B_ARATH Chloroplastic group IIB intron splicing facilitator CRS2-B,
chloroplastic OS=Arabidopsis thaliana GN=CRS2B PE=2 SV=1
Length = 240
Score = 191 bits (485), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 90/168 (53%), Positives = 119/168 (70%)
Query: 1 MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
MID A +G+ MNT+ KA G G + D P+LLAKPQTYMN SGES G LA++Y++PL
Sbjct: 69 MIDVLARKEGVLMNTIQSKALIGIGAIEDVPILLAKPQTYMNFSGESVGSLASHYRVPLR 128
Query: 61 RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
+L+ +D+M LP GVLRL+ GG G HNG+KSVM + G R F RL IGIG+PPG MD K
Sbjct: 129 HILMIYDEMALPNGVLRLQPKGGQGYHNGVKSVMGHLDGRRNFPRLSIGIGKPPGNMDMK 188
Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYK 168
AFLLQKF+ + +++I+ AL++G E +K L+ G + FN +QKYK
Sbjct: 189 AFLLQKFSPLEQKQIEEALEQGSEAVKTLVLNGFNQGISRFNLVQKYK 236
>sp|Q47SW2|PTH_THEFY Peptidyl-tRNA hydrolase OS=Thermobifida fusca (strain YX) GN=pth
PE=3 SV=1
Length = 213
Score = 135 bits (340), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 101/157 (64%), Gaps = 1/157 (0%)
Query: 1 MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
++D A +G A + VGDAPV+LAKP +YMNLSG L+A+YK+P++
Sbjct: 58 VVDELAAQRGERWRLHKAHAQVVETRVGDAPVVLAKPASYMNLSGGPVAKLSAFYKVPVD 117
Query: 61 RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
R++V HD++ +P L+L+ GG GHNGL+S+ + G+ ++ R+R+GIGRPPG+MD
Sbjct: 118 RIIVVHDELDIPFARLKLKRGGGSAGHNGLRSITASL-GSPDYVRVRVGIGRPPGRMDAA 176
Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 157
+F+LQ F+ R+ +D + + ++ +++ GL ++
Sbjct: 177 SFVLQDFSTAERKELDVHVARAADAVETVVTSGLEKA 213
>sp|Q10LI6|CRS2L_ORYSJ CRS2-like protein, chloroplastic OS=Oryza sativa subsp. japonica
GN=Os03g0347800 PE=2 SV=1
Length = 186
Score = 132 bits (332), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/89 (74%), Positives = 71/89 (79%)
Query: 1 MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
MID FA+SQGIS+ KA FG+G V PVLLAKPQTYMNLSGES GPLAAYYKLPLN
Sbjct: 84 MIDMFAQSQGISLTRHPFKALFGEGMVEGVPVLLAKPQTYMNLSGESVGPLAAYYKLPLN 143
Query: 61 RVLVFHDDMGLPCGVLRLRHNGGHGGHNG 89
RVLV DDM LPCGVLRL+ GG+G HNG
Sbjct: 144 RVLVAFDDMDLPCGVLRLQPKGGYGRHNG 172
>sp|A8F920|PTH_BACP2 Peptidyl-tRNA hydrolase OS=Bacillus pumilus (strain SAFR-032)
GN=pth PE=3 SV=1
Length = 188
Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 91/161 (56%), Gaps = 1/161 (0%)
Query: 2 IDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNR 61
ID ++ I +N FG GFV VLL KP TYMNLSGE PL YY +PL
Sbjct: 26 IDELSKKWDIPLNQSKFHGQFGTGFVSGQKVLLVKPLTYMNLSGECVRPLMDYYDIPLEH 85
Query: 62 VLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKA 121
+ V +DD+ LP G +RLR G GGHNG+KS++ + G+ EF R RIGIGRP M
Sbjct: 86 LKVIYDDLDLPTGRIRLRTKGSAGGHNGIKSLIQHL-GSPEFDRFRIGIGRPQNGMKVVD 144
Query: 122 FLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFN 162
++L +F+ + I +A+Q VE + L+K E FN
Sbjct: 145 YVLGRFSEEEQPDIASAIQASVEACEAALTKPFLEVMNDFN 185
>sp|A7GJW3|PTH_BACCN Peptidyl-tRNA hydrolase OS=Bacillus cereus subsp. cytotoxis (strain
NVH 391-98) GN=pth PE=3 SV=1
Length = 186
Score = 126 bits (316), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 91/162 (56%), Gaps = 1/162 (0%)
Query: 2 IDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNR 61
ID A+ IS+N K FG GFV V+L KP TYMNLSGES PL YYK+ L
Sbjct: 26 IDELAKRWNISLNEQKFKGMFGAGFVNGEKVILLKPLTYMNLSGESIRPLMDYYKIDLED 85
Query: 62 VLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKA 121
++ +DD+ LP G LRLR G GGHNG+KS + + G +EF R+R+GI RP M
Sbjct: 86 FIIMYDDLDLPVGKLRLRMKGSAGGHNGVKSTIAHL-GTQEFQRIRMGIDRPKNGMKVVD 144
Query: 122 FLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNT 163
++L +F A ++ A+++ + L+K + FN
Sbjct: 145 YVLGRFTAEEMVDVNHAIEKAANACEEWLNKSFLQVMNDFNN 186
>sp|B8G3X3|PTH_CHLAD Peptidyl-tRNA hydrolase OS=Chloroflexus aggregans (strain MD-66 /
DSM 9485) GN=pth PE=3 SV=1
Length = 188
Score = 125 bits (315), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 94/164 (57%), Gaps = 2/164 (1%)
Query: 2 IDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKL-PLN 60
++ AE G++ K+ +G + V L KPQTYMNLSG++ L +YK+ P
Sbjct: 26 VETLAERHGLTFRNQRAKSEIAEGIIRGQRVALVKPQTYMNLSGQAVAALRQWYKIDPAR 85
Query: 61 RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
+LV +DD+ LP LRLR G G HNG++S++ G EF RLRIGIG+PPGQMD
Sbjct: 86 ELLVIYDDLDLPFAKLRLRERGSAGTHNGMRSIVGQL-GTTEFPRLRIGIGQPPGQMDAA 144
Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTI 164
++L +F + L + +++++S+GLT + +N +
Sbjct: 145 DYVLSRFTPEEEAVLPEVLARVADAVEVVVSEGLTAAMNRYNPL 188
>sp|Q63HI2|PTH_BACCZ Peptidyl-tRNA hydrolase OS=Bacillus cereus (strain ZK / E33L)
GN=pth PE=3 SV=1
Length = 186
Score = 123 bits (308), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 94/162 (58%), Gaps = 1/162 (0%)
Query: 2 IDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNR 61
ID A+ IS+N K FG GFV V+L KP TYMNLSGES PL YYK+ +
Sbjct: 26 IDELAKRWNISLNEQKFKGVFGAGFVNGEKVILLKPLTYMNLSGESIRPLMDYYKIDVED 85
Query: 62 VLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKA 121
+V +DD+ +P G LRLR G GGHNG+KS +++ G +EF R+R+GI RP M
Sbjct: 86 FVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHL-GTQEFQRIRMGIDRPKNGMKVVD 144
Query: 122 FLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNT 163
++L +F + ++ ++++ + + L+K + FN+
Sbjct: 145 YVLGRFTSEEIPDVNHSIEKAADACEEWLNKPFLQIMNTFNS 186
>sp|B9IZD4|PTH_BACCQ Peptidyl-tRNA hydrolase OS=Bacillus cereus (strain Q1) GN=pth PE=3
SV=1
Length = 186
Score = 123 bits (308), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 94/162 (58%), Gaps = 1/162 (0%)
Query: 2 IDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNR 61
ID A+ IS+N K FG GFV V+L KP TYMNLSGES PL YYK+ +
Sbjct: 26 IDELAKRWNISLNEQKFKGVFGAGFVNGEKVILLKPLTYMNLSGESIRPLMDYYKIDVED 85
Query: 62 VLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKA 121
+V +DD+ +P G LRLR G GGHNG+KS +++ G +EF R+R+GI RP M
Sbjct: 86 FVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHL-GTQEFQRIRMGIDRPKNGMKVVD 144
Query: 122 FLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNT 163
++L +F + ++ ++++ + + L+K + FN+
Sbjct: 145 YVLGRFTSEEIPDVNHSIEKAADACEEWLNKPFLQIMNTFNS 186
>sp|Q81J96|PTH_BACCR Peptidyl-tRNA hydrolase OS=Bacillus cereus (strain ATCC 14579 / DSM
31) GN=pth PE=3 SV=2
Length = 186
Score = 123 bits (308), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 94/162 (58%), Gaps = 1/162 (0%)
Query: 2 IDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNR 61
ID A+ IS+N K FG GFV V+L KP TYMNLSGES PL YYK+ +
Sbjct: 26 IDELAKRWNISLNEQKFKGVFGAGFVNGEKVILLKPLTYMNLSGESIRPLMDYYKIDVED 85
Query: 62 VLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKA 121
+V +DD+ +P G LRLR G GGHNG+KS +++ G +EF R+R+GI RP M
Sbjct: 86 FVVMYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHL-GTQEFQRIRMGIDRPKNGMKVVD 144
Query: 122 FLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNT 163
++L +F + ++ ++++ + + L+K + FN+
Sbjct: 145 YVLGRFTSEEIPDVNHSIEKAADACEEWLNKPFLQIMNTFNS 186
>sp|Q6HPW6|PTH_BACHK Peptidyl-tRNA hydrolase OS=Bacillus thuringiensis subsp. konkukian
(strain 97-27) GN=pth PE=3 SV=1
Length = 186
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 94/162 (58%), Gaps = 1/162 (0%)
Query: 2 IDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNR 61
ID A+ IS+N K FG GFV V+L KP TYMNLSGES PL YYK+ +
Sbjct: 26 IDELAKRWNISLNEQKFKGLFGAGFVNGEKVILLKPLTYMNLSGESIRPLMDYYKIDVED 85
Query: 62 VLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKA 121
+V +DD+ +P G LRLR G GGHNG+KS +++ G +EF R+R+GI RP M
Sbjct: 86 FVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHL-GTQEFQRIRMGIDRPKNGMKVVD 144
Query: 122 FLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNT 163
++L +F + ++ ++++ + + L+K + FN+
Sbjct: 145 YVLGRFTSEEIPDVNHSIEKAADACEEWLNKPFLQIMNTFNS 186
>sp|Q81VY9|PTH_BACAN Peptidyl-tRNA hydrolase OS=Bacillus anthracis GN=pth PE=3 SV=1
Length = 186
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 94/162 (58%), Gaps = 1/162 (0%)
Query: 2 IDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNR 61
ID A+ IS+N K FG GFV V+L KP TYMNLSGES PL YYK+ +
Sbjct: 26 IDELAKRWNISLNEQKFKGLFGAGFVNGEKVILLKPLTYMNLSGESIRPLMDYYKIDVED 85
Query: 62 VLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKA 121
+V +DD+ +P G LRLR G GGHNG+KS +++ G +EF R+R+GI RP M
Sbjct: 86 FVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHL-GTQEFQRIRMGIDRPKNGMKVVD 144
Query: 122 FLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNT 163
++L +F + ++ ++++ + + L+K + FN+
Sbjct: 145 YVLGRFTSEEIPDVNHSIEKAADACEEWLNKPFLQIMNTFNS 186
>sp|Q9F8Q3|PTH_CARHZ Peptidyl-tRNA hydrolase OS=Carboxydothermus hydrogenoformans
(strain Z-2901 / DSM 6008) GN=pth PE=3 SV=2
Length = 187
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 97/162 (59%), Gaps = 2/162 (1%)
Query: 1 MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
++D A+ GI + K+ G+G + VLL KPQTYMNLSG + ++YKLPL+
Sbjct: 25 VVDELAKKHGILITKRKFKSLVGEGEILGVKVLLLKPQTYMNLSGTAVQEAVSFYKLPLS 84
Query: 61 RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
R++V +DD+ LP G +RLR G GGH G+ S+++ G+ E RL+IGIGR P D K
Sbjct: 85 RLVVVYDDLDLPLGKIRLRLKGSAGGHRGMGSIISCL-GSEEIPRLKIGIGR-PAVGDVK 142
Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFN 162
++LQ F RE ++ L+ E + + L++G ++ FN
Sbjct: 143 DYVLQPFTGAEREILEPTLKLAAEAITVALTEGFNKAMTDFN 184
>sp|Q73FF7|PTH_BACC1 Peptidyl-tRNA hydrolase OS=Bacillus cereus (strain ATCC 10987)
GN=pth PE=3 SV=2
Length = 186
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 94/162 (58%), Gaps = 1/162 (0%)
Query: 2 IDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNR 61
ID A+ IS+N K FG GFV V+L KP TYMNLSGES PL YYK+ +
Sbjct: 26 IDELAKRWNISLNEQKFKGVFGAGFVNGEKVILLKPLTYMNLSGESIRPLMDYYKIDVED 85
Query: 62 VLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKA 121
+V +DD+ +P G LRLR G GGHNG+KS +++ G +EF R+R+GI RP M
Sbjct: 86 FVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHL-GTQEFQRIRMGIDRPKNGMKVVD 144
Query: 122 FLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNT 163
++L +F + ++ ++++ + + L+K + FN+
Sbjct: 145 YVLGRFTSEEIPGVNHSIEKAADACEEWLNKPFLQIMNTFNS 186
>sp|Q2J5Z1|PTH_FRASC Peptidyl-tRNA hydrolase OS=Frankia sp. (strain CcI3) GN=pth PE=3
SV=1
Length = 197
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 104/167 (62%), Gaps = 7/167 (4%)
Query: 1 MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAA---YYKL 57
++D AE G + + +A + + A +LA+P ++MNLSG GP+AA +YK+
Sbjct: 34 VVDLLAERTGSRLKSHRSRADVAETRLAGARAVLARPLSFMNLSG---GPVAAARSFYKV 90
Query: 58 PLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQM 117
++R++V HD++ +P G +RL+ GG GHNGL+S+ + G R++ R+R+GIGRPPG+M
Sbjct: 91 EVSRLIVVHDELDIPFGAVRLKRGGGDNGHNGLRSISSAL-GTRDYLRVRVGIGRPPGRM 149
Query: 118 DPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTI 164
DP F+L+ F + R + L+ + +++L++ GL + ++ +
Sbjct: 150 DPADFVLRDFTSTERRELPLLLEHAADSVEMLIADGLEPAQNRYHAL 196
>sp|A1TEG1|PTH_MYCVP Peptidyl-tRNA hydrolase OS=Mycobacterium vanbaalenii (strain DSM
7251 / PYR-1) GN=pth PE=3 SV=1
Length = 192
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 103/169 (60%), Gaps = 7/169 (4%)
Query: 1 MIDAFAESQGISMNTVHCK--ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLP 58
++D A+ G VH K A G + PV+LAKP+ YMN SG GPLA +Y +
Sbjct: 28 VVDILADRMGEKFK-VHKKSGAEVATGRLAGRPVVLAKPRVYMNESGRQVGPLAKFYSVA 86
Query: 59 LNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMD 118
V++ HD++ + G +RL+ GG GHNGL+SV + GN +F R+R+GIGRPPG
Sbjct: 87 PADVVIVHDELDIDFGRIRLKAGGGVAGHNGLRSVASALGGN-DFQRVRVGIGRPPGHKS 145
Query: 119 PKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKY 167
+F+L+ FN++ R+ + T L++ + +LL+++GL E A+ NT+ +
Sbjct: 146 GASFVLENFNSVERKEVPTILEQAADATELLVAQGL-EPAQ--NTVHAW 191
>sp|Q181A2|PTH_CLOD6 Peptidyl-tRNA hydrolase OS=Clostridium difficile (strain 630)
GN=pth PE=3 SV=1
Length = 186
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 94/162 (58%), Gaps = 1/162 (0%)
Query: 1 MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
+ID A+ IS+ + KA G+G VG VLL KPQTYMNLSGE+ + YYK+ L+
Sbjct: 25 VIDILAKEYNISVTKIKHKALIGEGRVGTEKVLLVKPQTYMNLSGETLIDIYKYYKVDLS 84
Query: 61 RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
++V +DD+ L G +R+R G G HNG+KS+ G+ +F R+R+G+ +P D
Sbjct: 85 NIVVVYDDIDLEVGKIRIRKKGSGGTHNGMKSITKCL-GSNDFPRVRVGVSKPEAGQDLA 143
Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFN 162
F+L +F + I+ AL++ + + ++ + + S +N
Sbjct: 144 DFVLSRFRKEESDNINEALEKAADAIDSIIRENIDMSMNKYN 185
>sp|P37470|PTH_BACSU Peptidyl-tRNA hydrolase OS=Bacillus subtilis (strain 168) GN=spoVC
PE=3 SV=1
Length = 188
Score = 120 bits (302), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 87/162 (53%), Gaps = 1/162 (0%)
Query: 1 MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
+ID A+ I +N +G GFV VLL KP TYMNLSGE PL YY +
Sbjct: 25 VIDQLAKEWNIELNQNKFNGLYGTGFVSGKKVLLVKPLTYMNLSGECLRPLMDYYDVDNE 84
Query: 61 RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
+ V +DD+ LP G +RLR G GGHNG+KS++ + G EF R+RIGIGRP M
Sbjct: 85 DLTVIYDDLDLPTGKIRLRTKGSAGGHNGIKSLIQHL-GTSEFDRIRIGIGRPVNGMKVV 143
Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFN 162
++L F I+ A+ + V+ + LSK E FN
Sbjct: 144 DYVLGSFTKEEAPEIEEAVDKSVKACEASLSKPFLEVMNEFN 185
>sp|A0PXL3|PTH_CLONN Peptidyl-tRNA hydrolase OS=Clostridium novyi (strain NT) GN=pth
PE=3 SV=1
Length = 188
Score = 120 bits (300), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 94/162 (58%), Gaps = 2/162 (1%)
Query: 1 MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
+ID +E I +N K +G G + + V+L KP TYMNLSGES + +YK+P
Sbjct: 25 IIDVISEKYNIDLNKKKFKGMYGDGTIANEKVILLKPLTYMNLSGESIKEVTDFYKIPKE 84
Query: 61 RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
V+V +DD+ L G +R+R G GGHNG+K+++ +F G+ F R+++G+G+P Q D
Sbjct: 85 NVIVIYDDISLEVGRMRIREKGSAGGHNGIKNIIAHF-GSDVFPRIKVGVGQPV-QRDLV 142
Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFN 162
+ +L KFN RE + + + + ++ KG E+ FN
Sbjct: 143 SHVLGKFNKDDREILSKVFEAASDAAENIIEKGTAEAMNKFN 184
>sp|Q65PG8|PTH_BACLD Peptidyl-tRNA hydrolase OS=Bacillus licheniformis (strain DSM 13 /
ATCC 14580) GN=pth PE=3 SV=1
Length = 188
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 87/161 (54%), Gaps = 1/161 (0%)
Query: 2 IDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNR 61
ID ++ I ++ +G GFV VLL KP TYMNLSGE PL YY++P++
Sbjct: 26 IDELSKEWNIPLDKTKFNGQYGIGFVSGKKVLLVKPLTYMNLSGECLRPLLDYYEIPVDN 85
Query: 62 VLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKA 121
+ V +DD+ LP G +RLR G GGHNG+KS + + G EF R+RIGIGRP M
Sbjct: 86 LKVIYDDLDLPTGRIRLRTKGSAGGHNGIKSTIQHL-GTSEFNRIRIGIGRPVNGMKVVD 144
Query: 122 FLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFN 162
++L F I A+++ + + L K E FN
Sbjct: 145 YVLGAFTDEEEPAIKEAVRQSAKACEASLEKPFLEVMNEFN 185
>sp|B9LE93|PTH_CHLSY Peptidyl-tRNA hydrolase OS=Chloroflexus aurantiacus (strain ATCC
29364 / DSM 637 / Y-400-fl) GN=pth PE=3 SV=1
Length = 188
Score = 118 bits (296), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 2/164 (1%)
Query: 2 IDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKL-PLN 60
+D AE G++ + +G + V+LAKPQTYMNLSG++ L +YK+ P
Sbjct: 26 VDTLAERHGLTFRPQRANSQLAEGNIYGQRVVLAKPQTYMNLSGQAVVALCNWYKIDPAR 85
Query: 61 RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
+LV +DD+ LP LR+R G G HNG++S++ G EF RLR+GIG+PPG+MD
Sbjct: 86 ELLVIYDDLDLPFAKLRIRERGSAGTHNGMRSIVAQL-GTTEFPRLRVGIGQPPGKMDAA 144
Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTI 164
++L +F + L + ++++L +GLT + +N +
Sbjct: 145 DYVLGRFTPDEEAALPDLLGRIADAVEVILREGLTTAMNRYNPL 188
>sp|A9WBS1|PTH_CHLAA Peptidyl-tRNA hydrolase OS=Chloroflexus aurantiacus (strain ATCC
29366 / DSM 635 / J-10-fl) GN=pth PE=3 SV=1
Length = 188
Score = 118 bits (296), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 2/164 (1%)
Query: 2 IDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKL-PLN 60
+D AE G++ + +G + V+LAKPQTYMNLSG++ L +YK+ P
Sbjct: 26 VDTLAERHGLTFRPQRANSQLAEGNIYGQRVVLAKPQTYMNLSGQAVVALCNWYKIDPAR 85
Query: 61 RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
+LV +DD+ LP LR+R G G HNG++S++ G EF RLR+GIG+PPG+MD
Sbjct: 86 ELLVIYDDLDLPFAKLRIRERGSAGTHNGMRSIVAQL-GTTEFPRLRVGIGQPPGKMDAA 144
Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTI 164
++L +F + L + ++++L +GLT + +N +
Sbjct: 145 DYVLGRFTPDEEAALPDLLGRIADAVEVILREGLTTAMNRYNPL 188
>sp|C0ZHD7|PTH_BREBN Peptidyl-tRNA hydrolase OS=Brevibacillus brevis (strain 47 / JCM
6285 / NBRC 100599) GN=pth PE=3 SV=1
Length = 189
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 91/165 (55%), Gaps = 1/165 (0%)
Query: 2 IDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNR 61
ID ++ GI + +A G+G + VLL KPQTYMNLSGES + +YKL +
Sbjct: 26 IDKISDKWGIPVTQNKFRALVGEGRIEGEKVLLVKPQTYMNLSGESVAEVLKFYKLIPDD 85
Query: 62 VLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKA 121
++V +DD+ LP G LRLR G GGHNG+KS++ + G +EF R+++GI RP
Sbjct: 86 LVVIYDDLDLPTGHLRLREKGSAGGHNGIKSMIQHL-GTQEFKRIKVGISRPEPGRSVSD 144
Query: 122 FLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQK 166
++L F R I A+ + + + + HFN+++K
Sbjct: 145 YVLNTFPVAERADIQEAVSLAADACAMWTRESFLKVMNHFNSLKK 189
>sp|Q0RCD6|PTH_FRAAA Peptidyl-tRNA hydrolase OS=Frankia alni (strain ACN14a) GN=pth PE=3
SV=1
Length = 197
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 97/164 (59%), Gaps = 1/164 (0%)
Query: 1 MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
++D AE G + + +A + + +LA+P ++MNLSG + +YK+
Sbjct: 34 VVDLLAERAGSRLKSHRSRADVAEVRLAGTRAILARPLSFMNLSGGPVSAVRTFYKIDPA 93
Query: 61 RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
RV+V HD++ +P G +RL+ GG GHNGL+S+ + G R++ R+R+GIGRPPG+MDP
Sbjct: 94 RVIVVHDELDIPFGSVRLKRGGGDNGHNGLRSISSAL-GTRDYLRVRVGIGRPPGRMDPA 152
Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTI 164
++L+ F A R + L+ + +++L++ GL + ++ +
Sbjct: 153 DYVLRDFAAAERRELPLLLEHSADSVEMLITDGLEPTQNRYHAL 196
>sp|A9KR32|PTH_CLOPH Peptidyl-tRNA hydrolase OS=Clostridium phytofermentans (strain ATCC
700394 / DSM 18823 / ISDg) GN=pth PE=3 SV=1
Length = 191
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 92/161 (57%), Gaps = 1/161 (0%)
Query: 2 IDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNR 61
I A+ IS++T KA G+G +G V+LAKPQTYMNLSGES L +YK+
Sbjct: 26 ITRLADDNNISLDTKKHKAICGKGMIGGEKVILAKPQTYMNLSGESVRELIDFYKVTKEE 85
Query: 62 VLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKA 121
++V +DD+ L G LR+R G GGHNG+K+++ + G+ EF R++IG+G P D
Sbjct: 86 IIVIYDDISLDVGQLRIRTKGSAGGHNGIKNIIAHL-GSDEFCRIKIGVGDKPKNWDLAD 144
Query: 122 FLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFN 162
++L +F I AL++ + + +L G + FN
Sbjct: 145 YVLARFPKEEEPAIREALEKVSKACETILRDGAKVAMNLFN 185
>sp|Q3Z8W2|PTH_DEHE1 Peptidyl-tRNA hydrolase OS=Dehalococcoides ethenogenes (strain 195)
GN=pth PE=3 SV=1
Length = 189
Score = 117 bits (293), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 91/162 (56%), Gaps = 4/162 (2%)
Query: 5 FAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLV 64
FA+ IS + C + G G + D ++LAKPQTYMNLSG++ L Y L ++V
Sbjct: 29 FAKDNHISFDKKCCLSRTGSGRINDEEIVLAKPQTYMNLSGKAASQLLRRYNLKAADIIV 88
Query: 65 FHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAF-- 122
DD+ LP G +RLR G GGHNG+ S++ + G +EF RL+IGIG+P + +
Sbjct: 89 VQDDLDLPAGKIRLRLGGSAGGHNGISSIITDI-GTKEFIRLKIGIGKPDSRNNGTEVVD 147
Query: 123 -LLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNT 163
+L F RE +D A+ E L LL+ GL ++ FN+
Sbjct: 148 HVLGNFGGEEREIMDKAITRASEALTCLLTFGLDTASNRFNS 189
>sp|B1IGZ7|PTH_CLOBK Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Okra /
Type B1) GN=pth PE=3 SV=1
Length = 189
Score = 117 bits (293), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 1 MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
++D AE I +N K ++G+G +G+ ++L KP TYMNLSGES A +YK+
Sbjct: 25 VVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLKPSTYMNLSGESVIEAANFYKIDKE 84
Query: 61 RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
++V +DDM + G LR+R G GGHNG+K+++ + + F R+R+GIG+P +
Sbjct: 85 NIIVIYDDMSIDIGKLRVRGKGSAGGHNGIKNIIQHLNSDI-FPRVRVGIGQPDENV--V 141
Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQ 165
++L KF+ RE ID L + ++ G+TE+ +N ++
Sbjct: 142 NYVLGKFSKDQREIIDKVLAMSAKACISIVEDGVTEAMNKYNGVK 186
>sp|B1YGP7|PTH_EXIS2 Peptidyl-tRNA hydrolase OS=Exiguobacterium sibiricum (strain DSM
17290 / JCM 13490 / 255-15) GN=pth PE=3 SV=1
Length = 185
Score = 116 bits (291), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 84/144 (58%), Gaps = 1/144 (0%)
Query: 2 IDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNR 61
IDA A+ GI + KA FG G + V+L KP TYMNLSGE+ PL +YK+ +
Sbjct: 26 IDALAKEHGIKLTESKFKAVFGTGMIKGERVVLVKPLTYMNLSGEAVRPLLDFYKIAVED 85
Query: 62 VLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKA 121
VLV +DD+ LP +RLR G GGHNG+KS++ + G ++ RL++G+GRPP +
Sbjct: 86 VLVIYDDLDLPLEKMRLRSKGSAGGHNGVKSLIQHL-GTQDIKRLKLGVGRPPAPIQVID 144
Query: 122 FLLQKFNAIARERIDTALQEGVEV 145
++L F + + L + V +
Sbjct: 145 WVLMPFAKSEQTTLQHVLSDSVNI 168
>sp|A5I7R5|PTH_CLOBH Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Hall /
ATCC 3502 / NCTC 13319 / Type A) GN=pth PE=3 SV=1
Length = 189
Score = 116 bits (291), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 1 MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
++D AE I +N K ++G+G +G+ ++L KP TYMNLSGES A +YK+
Sbjct: 25 VVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLKPSTYMNLSGESVIEAANFYKIDKE 84
Query: 61 RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
++V +DDM + G LR+R G GGHNG+K+++ + + F R+R+GIG+P +
Sbjct: 85 NIIVIYDDMSIDIGKLRVRSKGSAGGHNGIKNIIQHLNSDI-FPRVRVGIGQPDENV--V 141
Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQ 165
++L KF+ RE I+ L + ++ G+TE+ +N ++
Sbjct: 142 NYVLGKFSKDEREIIEKVLAMSAKACISIVEDGVTEAMNKYNGVK 186
>sp|A7FPJ7|PTH_CLOB1 Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain ATCC 19397
/ Type A) GN=pth PE=3 SV=1
Length = 189
Score = 116 bits (291), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 1 MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
++D AE I +N K ++G+G +G+ ++L KP TYMNLSGES A +YK+
Sbjct: 25 VVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLKPSTYMNLSGESVIEAANFYKIDKE 84
Query: 61 RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
++V +DDM + G LR+R G GGHNG+K+++ + + F R+R+GIG+P +
Sbjct: 85 NIIVIYDDMSIDIGKLRVRSKGSAGGHNGIKNIIQHLNSDI-FPRVRVGIGQPDENV--V 141
Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQ 165
++L KF+ RE I+ L + ++ G+TE+ +N ++
Sbjct: 142 NYVLGKFSKDEREIIEKVLAMSAKACISIVEDGVTEAMNKYNGVK 186
>sp|A4J0Q6|PTH_DESRM Peptidyl-tRNA hydrolase OS=Desulfotomaculum reducens (strain MI-1)
GN=pth PE=3 SV=1
Length = 206
Score = 116 bits (290), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 91/154 (59%), Gaps = 5/154 (3%)
Query: 1 MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
+ID A+ +S KA Q +G V+LAKPQTYMNLSG+S L +YKL +
Sbjct: 25 VIDRLADESRVSTEKNQHKAQICQITIGSEKVILAKPQTYMNLSGQSVVALMNWYKLSPD 84
Query: 61 RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPP-GQMDP 119
+ V DDM LP GVLR+R NG GG GLK+++ G ++F R+R+GIGRP G +D
Sbjct: 85 ELFVITDDMDLPPGVLRIRKNGSAGGQRGLKNII-ELLGTQQFPRMRVGIGRPEHGAVD- 142
Query: 120 KAFLLQKFNAIARERIDTALQEGVEVLKLLLSKG 153
+L K + E I+ A+Q VE +K+ + +G
Sbjct: 143 --HVLGKISEAEAELINPAIQTAVEAVKVWVLEG 174
>sp|Q5L3U7|PTH_GEOKA Peptidyl-tRNA hydrolase OS=Geobacillus kaustophilus (strain HTA426)
GN=pth PE=3 SV=1
Length = 186
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 88/162 (54%), Gaps = 1/162 (0%)
Query: 1 MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
+ID A+ +S+ T + FG V V L KP TYMNLSGE PL YY + ++
Sbjct: 25 VIDELAKRWNVSLKTAKFRGLFGTASVSGEKVALCKPLTYMNLSGECVRPLMDYYDIAID 84
Query: 61 RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
V+V +DD+ LP G +RLR G GGHNG+KS++++ G +F R+RIGIGRP G
Sbjct: 85 DVIVIYDDLDLPPGKIRLRLKGSSGGHNGVKSLIHHL-GTEQFKRIRIGIGRPAGGQPVT 143
Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFN 162
++L +F + +D A+ + + + + FN
Sbjct: 144 DYVLGRFTEEEKPAVDKAVLRAADACEQAVKAPFIQVMNDFN 185
>sp|C1FNE6|PTH_CLOBJ Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Kyoto /
Type A2) GN=pth PE=3 SV=1
Length = 189
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 1 MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
++D AE I +N K ++G+G +G+ ++L KP TYMNLSGES A +YK+
Sbjct: 25 VVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLKPSTYMNLSGESVIEAANFYKIDKE 84
Query: 61 RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
++V +DDM + G LR+R G GGHNG+K+++ + + F R+R+GIG+P +
Sbjct: 85 NIIVIYDDMSIDIGKLRVRGKGSAGGHNGIKNIIQHLNSDI-FPRVRVGIGQPDENV--V 141
Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQ 165
++L KF+ RE I+ L + ++ G+TE+ +N ++
Sbjct: 142 NYVLGKFSKDEREIIEKVLAMSAKACISIVEDGVTEAMNKYNGVK 186
>sp|A7GJD4|PTH_CLOBL Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Langeland
/ NCTC 10281 / Type F) GN=pth PE=3 SV=1
Length = 189
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 1 MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
++D AE I +N K ++G+G +G+ ++L KP TYMNLSGES A +YK+
Sbjct: 25 VVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLKPSTYMNLSGESVIEAANFYKIDKE 84
Query: 61 RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
++V +DDM + G LR+R G GGHNG+K+++ + + F R+R+GIG+P +
Sbjct: 85 NIIVIYDDMSIDIGKLRVRGKGSAGGHNGIKNIIQHLNSDI-FPRVRVGIGQPDENV--V 141
Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQ 165
++L KF+ RE I+ L + ++ G+TE+ +N ++
Sbjct: 142 NYVLGKFSKDQREIIEKVLAMSAKACISIVEDGVTEAMNKYNGVK 186
>sp|C3KW96|PTH_CLOB6 Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain 657 / Type
Ba4) GN=pth PE=3 SV=1
Length = 189
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 1 MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
++D AE I +N K ++G+G +G+ ++L KP TYMNLSGES A +YK+
Sbjct: 25 VVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLKPSTYMNLSGESVIEAANFYKIDKE 84
Query: 61 RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
++V +DDM + G LR+R G GGHNG+K+++ + + F R+R+GIG+P +
Sbjct: 85 NIIVIYDDMSIDIGKLRVRGKGSAGGHNGIKNIIQHLNSDI-FPRVRVGIGQPDENV--V 141
Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQ 165
++L KF+ RE I+ L + ++ G+TE+ +N ++
Sbjct: 142 NYVLGKFSKDQREIIEKVLAMSAKACISIVEDGVTEAMNKYNGVK 186
>sp|Q1B425|PTH_MYCSS Peptidyl-tRNA hydrolase OS=Mycobacterium sp. (strain MCS) GN=pth
PE=3 SV=1
Length = 192
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 85/135 (62%), Gaps = 1/135 (0%)
Query: 20 ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 79
A G + V+LAKP+TYMN SG + GPLA +Y + V+V HD++ + G +RL+
Sbjct: 48 ADIATGRLAGRAVVLAKPRTYMNESGRNVGPLAKFYSVAPADVIVIHDELDIDFGRIRLK 107
Query: 80 HNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTAL 139
GG GHNGLKSV G ++F R+R+G+GRPPG+ D ++L+ F ++ R + T
Sbjct: 108 FGGGVAGHNGLKSVAAAL-GTKDFQRVRVGVGRPPGRKDAATYVLEPFTSVERPEVPTIC 166
Query: 140 QEGVEVLKLLLSKGL 154
++ + +LL+++GL
Sbjct: 167 EQAADATELLIAQGL 181
>sp|A1UL23|PTH_MYCSK Peptidyl-tRNA hydrolase OS=Mycobacterium sp. (strain KMS) GN=pth
PE=3 SV=1
Length = 192
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 85/135 (62%), Gaps = 1/135 (0%)
Query: 20 ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 79
A G + V+LAKP+TYMN SG + GPLA +Y + V+V HD++ + G +RL+
Sbjct: 48 ADIATGRLAGRAVVLAKPRTYMNESGRNVGPLAKFYSVAPADVIVIHDELDIDFGRIRLK 107
Query: 80 HNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTAL 139
GG GHNGLKSV G ++F R+R+G+GRPPG+ D ++L+ F ++ R + T
Sbjct: 108 FGGGVAGHNGLKSVAAAL-GTKDFQRVRVGVGRPPGRKDAATYVLEPFTSVERPEVPTIC 166
Query: 140 QEGVEVLKLLLSKGL 154
++ + +LL+++GL
Sbjct: 167 EQAADATELLIAQGL 181
>sp|A3Q5H1|PTH_MYCSJ Peptidyl-tRNA hydrolase OS=Mycobacterium sp. (strain JLS) GN=pth
PE=3 SV=1
Length = 192
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 85/135 (62%), Gaps = 1/135 (0%)
Query: 20 ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 79
A G + V+LAKP+TYMN SG + GPLA +Y + V+V HD++ + G +RL+
Sbjct: 48 ADIATGRLAGRAVVLAKPRTYMNESGRNVGPLAKFYSVAPADVIVIHDELDIDFGRIRLK 107
Query: 80 HNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTAL 139
GG GHNGLKSV G ++F R+R+G+GRPPG+ D ++L+ F ++ R + T
Sbjct: 108 FGGGVAGHNGLKSVAAAL-GTKDFQRVRVGVGRPPGRKDAATYVLEPFTSVERPEVPTIC 166
Query: 140 QEGVEVLKLLLSKGL 154
++ + +LL+++GL
Sbjct: 167 EQAADATELLIAQGL 181
>sp|Q2JV16|PTH_SYNJA Peptidyl-tRNA hydrolase OS=Synechococcus sp. (strain JA-3-3Ab)
GN=pth PE=3 SV=1
Length = 225
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 97/178 (54%), Gaps = 3/178 (1%)
Query: 1 MIDAFAESQGISMN-TVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPL 59
++D AE GI + + ++G+GF L KP+TYMN SGE+ + +YKL
Sbjct: 38 VVDQLAERWGIPLALEKRFQGSYGEGFALGGKRRLLKPETYMNRSGEAVRAVLDWYKLDP 97
Query: 60 NRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDP 119
VLV +DDM LP G LRLR +G GGHNG+KSV+ + G+ F RLR+G+GRP G D
Sbjct: 98 ASVLVVYDDMDLPLGRLRLRGSGSAGGHNGMKSVIEHL-GSEAFPRLRLGVGRPKGNQDR 156
Query: 120 KAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA 177
+L F + +D L+ V ++ L +GL + FN + + Q+ PA
Sbjct: 157 VGHVLGSFEPAEQAVLDRVLRAAVAAVECCLQEGLKTAMNRFNPLD-FSGPDRQDQPA 213
>sp|B1KTE2|PTH_CLOBM Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Loch Maree
/ Type A3) GN=pth PE=3 SV=1
Length = 189
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 1 MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
++D AE I +N K ++G+G +G+ ++L KP TYMNLSGES A +YK+
Sbjct: 25 VVDIVAEKYNIEINRQKFKGSYGEGRIGNEKIILLKPSTYMNLSGESVIEAANFYKIDKE 84
Query: 61 RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
++V +DDM + G LR+R G GGHNG+K+++ + + F R+R+GIG+P +
Sbjct: 85 NIIVIYDDMSIDIGKLRVRGKGSAGGHNGIKNIIQHLNSDI-FPRVRVGIGQPDENV--V 141
Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQ 165
++L KF+ RE I+ L + ++ G+TE+ +N ++
Sbjct: 142 NYVLGKFSKDQREVIEKVLAMSAKACISIVEDGVTEAMNKYNGVK 186
>sp|Q6MJR3|PTH_BDEBA Peptidyl-tRNA hydrolase OS=Bdellovibrio bacteriovorus (strain ATCC
15356 / DSM 50701 / NCIB 9529 / HD100) GN=pth PE=3 SV=1
Length = 187
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 94/163 (57%), Gaps = 2/163 (1%)
Query: 2 IDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNR 61
+D E G KA Q + D PV+ KPQTYMNLSGES PL +YK+PL R
Sbjct: 26 VDFLMEGLGNPPIKNQFKAEIAQAKIKDHPVIFCKPQTYMNLSGESVQPLMGFYKIPLER 85
Query: 62 VLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDP-K 120
++V HD++ P ++++ N GHGGHNG+KS+ + G+ ++ RLR+G+GRP P
Sbjct: 86 LIVIHDEIDQPFAQMKIQKNRGHGGHNGIKSI-SGLMGSMDYTRLRLGVGRPANPNIPVP 144
Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNT 163
++L KF ++ L + + ++ ++ G+ +++ FNT
Sbjct: 145 DYVLGKFTKEEFAQMPDFLNKAGDAVESIILDGIQKASTKFNT 187
>sp|A4T6N5|PTH_MYCGI Peptidyl-tRNA hydrolase OS=Mycobacterium gilvum (strain PYR-GCK)
GN=pth PE=3 SV=1
Length = 192
Score = 114 bits (286), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 98/168 (58%), Gaps = 7/168 (4%)
Query: 3 DAFAESQGISMNTVHCK--ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
D A+ G + VH K A G + PV+LAKP+ YMN SG GPLA +Y +
Sbjct: 30 DVLADRMGETFK-VHKKSGAEVTTGRLAGRPVVLAKPRVYMNESGRQVGPLAKFYSIAPT 88
Query: 61 RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
V++ HD++ + G +RL+ GG GHNGL+SV + N +F R+R+GIGRPPGQ
Sbjct: 89 DVVIIHDELDIDFGRIRLKAGGGVAGHNGLRSVGSALSTN-DFQRVRVGIGRPPGQKSGA 147
Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYK 168
+F+L+ FN+ R + T +++ + +LL+ G+ E A+ NT+ +
Sbjct: 148 SFVLEPFNSRERPELGTIIEQAADATELLIELGI-EPAQ--NTVHAWS 192
>sp|A7Z0H6|PTH_BACA2 Peptidyl-tRNA hydrolase OS=Bacillus amyloliquefaciens (strain
FZB42) GN=pth PE=3 SV=1
Length = 188
Score = 114 bits (285), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 85/161 (52%), Gaps = 1/161 (0%)
Query: 2 IDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNR 61
ID ++ I +N +G GFV VLL KP TYMNLSGE P+ YY
Sbjct: 26 IDELSKEWNIELNKTKFNGLYGMGFVSGKKVLLVKPLTYMNLSGECLRPILDYYDADHED 85
Query: 62 VLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKA 121
+ V +DD+ LP G +RLR G GGHNG+KS++ + G EF R+RIGIGRP M
Sbjct: 86 LKVIYDDLDLPTGKIRLRTKGSAGGHNGIKSLIQHL-GTPEFDRVRIGIGRPVNGMKVVD 144
Query: 122 FLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFN 162
++L F I+ A+ + V+ + L+K E FN
Sbjct: 145 YVLGAFTKEEAPHINDAVSKTVKACEASLTKPFLEVMNEFN 185
>sp|Q8XHJ8|PTH_CLOPE Peptidyl-tRNA hydrolase OS=Clostridium perfringens (strain 13 /
Type A) GN=pth PE=3 SV=1
Length = 188
Score = 114 bits (284), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 3/164 (1%)
Query: 1 MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
+ID A I +N K G+GF+ + V+L KP TYMNLSGES LA +YKL +
Sbjct: 25 VIDYMANKYNIDVNREKFKGICGEGFIENKKVILLKPLTYMNLSGESIRELANFYKLEDD 84
Query: 61 RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
++V +DD+ L G LR+R G GGHNG+KS++ N G++ F R+++G+G+P +
Sbjct: 85 EIIVVYDDISLDIGRLRIREKGSAGGHNGIKSIIQNLGGDK-FPRVKVGVGQPKDNL--V 141
Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTI 164
+L KF+ RE I+ + + + ++ ES FN +
Sbjct: 142 NHVLGKFSKEDREHIEKVIPVVSDAIVEIVKNDAKESMNKFNGV 185
>sp|Q0TMG7|PTH_CLOP1 Peptidyl-tRNA hydrolase OS=Clostridium perfringens (strain ATCC
13124 / NCTC 8237 / Type A) GN=pth PE=3 SV=1
Length = 188
Score = 114 bits (284), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 3/164 (1%)
Query: 1 MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
+ID A I +N K G+GF+ + V+L KP TYMNLSGES LA +YKL +
Sbjct: 25 VIDYMANKYNIDVNREKFKGICGEGFIENKKVILLKPLTYMNLSGESIRELANFYKLEDD 84
Query: 61 RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
++V +DD+ L G LR+R G GGHNG+KS++ N G++ F R+++G+G+P +
Sbjct: 85 EIIVVYDDISLDIGRLRIREKGSAGGHNGIKSIIQNLGGDK-FPRVKVGVGQPKDNL--V 141
Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTI 164
+L KF+ RE I+ + + + ++ ES FN +
Sbjct: 142 NHVLGKFSKEDREHIEKVIPVVSDAIVEIVKNDAKESMNKFNGV 185
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,676,887
Number of Sequences: 539616
Number of extensions: 2928261
Number of successful extensions: 6513
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5200
Number of HSP's gapped (non-prelim): 730
length of query: 177
length of database: 191,569,459
effective HSP length: 110
effective length of query: 67
effective length of database: 132,211,699
effective search space: 8858183833
effective search space used: 8858183833
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)