Query 030459
Match_columns 177
No_of_seqs 159 out of 1015
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 22:52:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030459.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030459hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fyj_A PTH, peptidyl-tRNA hydr 100.0 2.2E-63 7.6E-68 408.3 16.5 163 1-164 34-198 (199)
2 2pth_A Peptidyl-tRNA hydrolase 100.0 2.6E-63 8.9E-68 406.4 15.9 163 1-164 26-190 (193)
3 2z2i_A PTH, peptidyl-tRNA hydr 100.0 2.9E-63 1E-67 405.5 15.7 162 1-163 28-190 (191)
4 4hoy_A PTH, peptidyl-tRNA hydr 100.0 1.1E-62 3.8E-67 402.7 15.7 164 1-166 28-192 (193)
5 1ryb_A CRS2; alpha-beta, hydro 100.0 1.8E-62 6.2E-67 404.3 14.8 163 1-163 41-203 (205)
6 3v2i_A PTH, peptidyl-tRNA hydr 100.0 5.7E-62 1.9E-66 405.4 16.6 164 1-165 47-221 (222)
7 3nea_A PTH, peptidyl-tRNA hydr 100.0 5.4E-62 1.8E-66 401.9 11.8 160 1-161 47-207 (207)
8 4fno_A PTH, peptidyl-tRNA hydr 100.0 1.8E-63 6.3E-68 407.4 0.0 164 1-165 28-193 (194)
9 2jva_A Peptidyl-tRNA hydrolase 60.8 2.7 9.4E-05 30.6 1.0 41 63-111 2-44 (108)
10 2ba3_A NIKA; dimer, bacterial 56.7 5.7 0.0002 24.3 1.9 41 110-150 4-45 (51)
11 4dh9_Y YAEJ; ribosome, YAEJ, r 55.0 2.2 7.4E-05 32.6 -0.4 41 63-111 2-44 (140)
12 3utn_X Thiosulfate sulfurtrans 45.2 18 0.00062 30.6 3.8 36 37-72 90-125 (327)
13 2inw_A Putative structural pro 42.2 34 0.0011 25.7 4.4 30 124-153 51-80 (133)
14 2ea9_A JW2626, hypothetical pr 42.1 27 0.00094 25.3 3.8 30 124-153 37-66 (105)
15 1am7_A Lysozyme; glycosidase, 34.7 43 0.0015 25.8 4.1 41 123-163 82-122 (158)
16 4hbl_A Transcriptional regulat 33.9 50 0.0017 23.3 4.2 30 121-150 118-147 (149)
17 2k9i_A Plasmid PRN1, complete 33.3 28 0.00095 20.8 2.4 39 111-151 1-40 (55)
18 2l32_A Small archaeal modifier 30.7 31 0.0011 22.8 2.4 32 44-75 19-50 (74)
19 3ddh_A Putative haloacid dehal 30.2 31 0.0011 25.0 2.6 29 44-72 159-189 (234)
20 1lj9_A Transcriptional regulat 30.1 62 0.0021 22.3 4.2 31 120-150 108-138 (144)
21 3r4c_A Hydrolase, haloacid deh 29.6 28 0.00095 26.9 2.3 25 45-69 196-220 (268)
22 3kp7_A Transcriptional regulat 29.4 71 0.0024 22.4 4.4 30 120-149 118-147 (151)
23 3fzq_A Putative hydrolase; YP_ 29.0 29 0.00098 26.7 2.3 25 45-69 202-226 (274)
24 3dao_A Putative phosphatse; st 28.1 30 0.001 27.3 2.3 25 44-68 212-236 (283)
25 3dnp_A Stress response protein 28.0 31 0.0011 26.9 2.3 58 44-127 203-261 (290)
26 4dw8_A Haloacid dehalogenase-l 27.4 30 0.001 26.9 2.2 25 45-69 199-223 (279)
27 3pgv_A Haloacid dehalogenase-l 27.1 32 0.0011 27.1 2.3 25 45-69 211-235 (285)
28 2zet_C Melanophilin; complex, 27.1 1.4E+02 0.0047 22.6 5.8 36 124-160 14-49 (153)
29 3deu_A Transcriptional regulat 27.0 42 0.0014 24.5 2.8 31 120-150 133-163 (166)
30 3mpo_A Predicted hydrolase of 26.6 27 0.00094 27.1 1.8 25 44-68 198-222 (279)
31 1w94_A MIL, probable BRIX-doma 26.6 55 0.0019 24.8 3.5 32 38-72 27-58 (156)
32 3b64_A Macrophage migration in 26.5 47 0.0016 22.9 2.9 23 51-74 84-106 (112)
33 3l7y_A Putative uncharacterize 26.5 33 0.0011 27.3 2.3 57 45-127 230-287 (304)
34 4gib_A Beta-phosphoglucomutase 26.3 1.1E+02 0.0039 23.2 5.4 68 46-140 174-242 (250)
35 2llk_A Cyclin-D-binding MYB-li 26.2 1.4E+02 0.0049 19.7 5.5 39 124-163 23-65 (73)
36 2pq0_A Hypothetical conserved 26.1 26 0.00091 27.0 1.6 57 45-127 185-242 (258)
37 1j26_A Immature colon carcinom 25.5 36 0.0012 24.7 2.1 35 68-110 14-50 (112)
38 2cqq_A RSGI RUH-037, DNAJ homo 23.4 1.6E+02 0.0053 19.4 4.9 39 125-163 9-54 (72)
39 3mtn_B UBA80, ubcep1, ubiquiti 21.8 52 0.0018 20.9 2.2 39 51-89 33-85 (85)
40 2c4n_A Protein NAGD; nucleotid 21.2 48 0.0016 24.3 2.2 26 44-69 178-203 (250)
41 2x4d_A HLHPP, phospholysine ph 21.0 51 0.0017 24.8 2.3 26 44-69 192-217 (271)
42 2fkc_A R.HINP1I restriction en 20.7 20 0.0007 29.3 -0.1 36 50-88 195-230 (247)
43 3bpv_A Transcriptional regulat 20.4 82 0.0028 21.4 3.2 27 121-147 109-135 (138)
44 2gxg_A 146AA long hypothetical 20.3 1.1E+02 0.0039 20.9 3.9 24 123-146 118-141 (146)
45 3nrv_A Putative transcriptiona 20.0 82 0.0028 21.8 3.2 27 121-147 120-146 (148)
No 1
>4fyj_A PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas aeruginosa} PDB: 4fno_A 4djj_A* 4erx_A 4dhw_A
Probab=100.00 E-value=2.2e-63 Score=408.26 Aligned_cols=163 Identities=32% Similarity=0.584 Sum_probs=157.1
Q ss_pred CHHHHHHHcCCCCcc-cccceeEEEEEECCeeEEEEecCcccccccccHHHHHHhcCCCCCcEEEEEecCCCCCceEEEe
Q 030459 1 MIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 79 (177)
Q Consensus 1 viD~la~~~~~~~~~-~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~~V~~~~~~~ki~~~~ilVihDdldl~~G~irlk 79 (177)
+||+||++++++|.+ .+|.++++++.+++++++|+||+||||+||++|+++++||+|+|++|||||||||||+|++|+|
T Consensus 34 vlD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~yki~~~~ilVihDdldLp~G~irlk 113 (199)
T 4fyj_A 34 FVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLK 113 (199)
T ss_dssp HHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHHTTCCGGGEEEEEEETTSCTTCEEEE
T ss_pred HHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhCChHHHHHHHHHhCCCHHHEEEEEecCCCCCceEEEe
Confidence 589999999999864 5789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCchhhHHHhhcCCC-CcceEEEeecCCCCCCCccccccCcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Q 030459 80 HNGGHGGHNGLKSVMNNFRGNR-EFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESA 158 (177)
Q Consensus 80 ~gGs~~GHNGlkSI~~~l~gt~-~f~RlrIGIGrp~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~~~~~~~~~~~~~am 158 (177)
.+||+|||||||||+++| ||+ +|+|||||||||+.+.++++|||++|+++|++.|+++++.|++|++.|+++++++||
T Consensus 114 ~gGs~gGHNGLkSI~~~L-gt~~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~a~~~~~~~~~~~am 192 (199)
T 4fyj_A 114 TGGGHGGHNGLRDIIAQL-GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAGDWTRAM 192 (199)
T ss_dssp ESCCCTTCHHHHHHHHHH-CSSSCCEEEEEECCCCSSGGGHHHHHTSCCCHHHHHHHHHHHHHHHHTHHHHHHTCHHHHH
T ss_pred cCCCCCCCCCHHHHHHHh-CCccceEEEEEEeCCCCCCCchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 999999999999999999 798 999999999999887899999999999999999999999999999999999999999
Q ss_pred Hhhhhh
Q 030459 159 RHFNTI 164 (177)
Q Consensus 159 n~~n~~ 164 (177)
|+||++
T Consensus 193 n~~n~~ 198 (199)
T 4fyj_A 193 QKLHSQ 198 (199)
T ss_dssp HHHTTC
T ss_pred HHHhCC
Confidence 999974
No 2
>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A
Probab=100.00 E-value=2.6e-63 Score=406.36 Aligned_cols=163 Identities=33% Similarity=0.615 Sum_probs=156.1
Q ss_pred CHHHHHHHcCCCCc-ccccceeEEEEEECCeeEEEEecCcccccccccHHHHHHhcCCCCCcEEEEEecCCCCCceEEEe
Q 030459 1 MIDAFAESQGISMN-TVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 79 (177)
Q Consensus 1 viD~la~~~~~~~~-~~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~~V~~~~~~~ki~~~~ilVihDdldl~~G~irlk 79 (177)
+||+||++++++|. +.+|+++++++.+.+++|+|+||+||||+||++|+++++||+|++++|||||||||||+|++|+|
T Consensus 26 viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~sV~~~~~~yki~~~~ilVihDdldlp~G~irlk 105 (193)
T 2pth_A 26 FVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFK 105 (193)
T ss_dssp HHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHHHTCCGGGEEEEEEETTSCTTCEEEE
T ss_pred HHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchHhcCcHHHHHHHHHhCCCHHHEEEEecccCCCCceEEEe
Confidence 58999999999987 56799999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCchhhHHHhhcC-CCCcceEEEeecCCCCCCCccccccCcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Q 030459 80 HNGGHGGHNGLKSVMNNFRG-NREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESA 158 (177)
Q Consensus 80 ~gGs~~GHNGlkSI~~~l~g-t~~f~RlrIGIGrp~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~~~~~~~~~~~~~am 158 (177)
.+||+|||||||||+++| | |++|+|||||||||+.+.++++|||++|+++|++.|+++++.|++|++.|+++++++||
T Consensus 106 ~gGs~gGHNGlkSI~~~L-g~t~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~a~~~~~~~~~~~am 184 (193)
T 2pth_A 106 LGGGHGGHNGLKDIISKL-GNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLTKAT 184 (193)
T ss_dssp ESCCCTTCHHHHHHHHHT-TSCCCSEEEEEECCCCSSHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred cCCCCCCCCCHHHHHHHh-CCCCCeEEEEEEeCCCCCCCchhHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 999999999999999999 7 89999999999999655579999999999999999999999999999999999999999
Q ss_pred Hhhhhh
Q 030459 159 RHFNTI 164 (177)
Q Consensus 159 n~~n~~ 164 (177)
|+||++
T Consensus 185 n~~n~~ 190 (193)
T 2pth_A 185 NRLHAF 190 (193)
T ss_dssp HHHHHT
T ss_pred HHHhCc
Confidence 999974
No 3
>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis} PDB: 2z2j_A 2z2k_A 3tck_A 3tcn_A 3td2_A 3td6_A 2jrc_A 3p2j_A 3kk0_A 3kjz_A
Probab=100.00 E-value=2.9e-63 Score=405.46 Aligned_cols=162 Identities=37% Similarity=0.735 Sum_probs=145.1
Q ss_pred CHHHHHHHcCCCCcc-cccceeEEEEEECCeeEEEEecCcccccccccHHHHHHhcCCCCCcEEEEEecCCCCCceEEEe
Q 030459 1 MIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 79 (177)
Q Consensus 1 viD~la~~~~~~~~~-~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~~V~~~~~~~ki~~~~ilVihDdldl~~G~irlk 79 (177)
+||+||+++++++.+ +||+++++++.+.+++|+|+||+||||+||++|+++++||+|+|++|||||||||||+|++|+|
T Consensus 28 viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~aV~~~~~~yki~~~~ilVihDdldlp~G~irlk 107 (191)
T 2z2i_A 28 VADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLK 107 (191)
T ss_dssp HHHHHHHHTTCCCEECTTTSSEEEEEEETTEEEEEEECSSCGGGTHHHHHHHHHHTTCCGGGEEEEEEETTSCTTCEEEE
T ss_pred HHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchhhcccHHHHHHHHHhCCCHHHEEEEecccCCCCceEEEe
Confidence 589999999999875 4689999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCchhhHHHhhcCCCCcceEEEeecCCCCCCCccccccCcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 030459 80 HNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESAR 159 (177)
Q Consensus 80 ~gGs~~GHNGlkSI~~~l~gt~~f~RlrIGIGrp~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~~~~~~~~~~~~~amn 159 (177)
.+||+|||||||||+++| ||++|+|||||||||+.+.++++|||++|+++|++.++++++.|++|++.|+++++++|||
T Consensus 108 ~gGs~gGHNGlkSI~~~L-gt~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~a~~~~~~~~~~~amn 186 (191)
T 2z2i_A 108 IGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGMEPAQN 186 (191)
T ss_dssp ESCCCTTCHHHHHHHHHH-TCSCSEEEEEECCCCCTTSCHHHHHTSBCCHHHHTTHHHHHHHHHHHHHHHHHC-------
T ss_pred cCCCCCCcCCHHHHHHHh-CCCCeEEEEEeeCCCCCCCchhhHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 999999999999999999 7999999999999997556799999999999999999999999999999999999999999
Q ss_pred hhhh
Q 030459 160 HFNT 163 (177)
Q Consensus 160 ~~n~ 163 (177)
+||+
T Consensus 187 ~~n~ 190 (191)
T 2z2i_A 187 RVHA 190 (191)
T ss_dssp ----
T ss_pred HHhC
Confidence 9996
No 4
>4hoy_A PTH, peptidyl-tRNA hydrolase; enzyme, molecular conformation, INH hydrolase; 1.78A {Acinetobacter baumannii} PDB: 4fot_A 4fop_A
Probab=100.00 E-value=1.1e-62 Score=402.65 Aligned_cols=164 Identities=31% Similarity=0.607 Sum_probs=157.5
Q ss_pred CHHHHHHHcCCCCcc-cccceeEEEEEECCeeEEEEecCcccccccccHHHHHHhcCCCCCcEEEEEecCCCCCceEEEe
Q 030459 1 MIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 79 (177)
Q Consensus 1 viD~la~~~~~~~~~-~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~~V~~~~~~~ki~~~~ilVihDdldl~~G~irlk 79 (177)
+||+||+++++++.. .++.++++++.+.+++++|+||+||||+||++|+++++||+|+++++||||||||||+|++|+|
T Consensus 28 ~ld~La~~~~~~~~~~~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~aV~~~~~~~ki~~~~ilVihDdldL~~G~irlk 107 (193)
T 4hoy_A 28 FVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVVPFSKFYQIAPEAILIAHDELDMNPGVIRLK 107 (193)
T ss_dssp HHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHHTTCCGGGEEEEEEETTSCTTCEEEE
T ss_pred HHHHHHHHcCCCccccccccEEEEEEEECCEEEEEEeCCCccccchhhHHHHHHHcCCCchheEEeeeccccccCceeec
Confidence 589999999999865 5789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCchhhHHHhhcCCCCcceEEEeecCCCCCCCccccccCcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 030459 80 HNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESAR 159 (177)
Q Consensus 80 ~gGs~~GHNGlkSI~~~l~gt~~f~RlrIGIGrp~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~~~~~~~~~~~~~amn 159 (177)
.+||+|||||||||+++| || ||+|||||||||+.+.++++|||++|+++|++.++++++.|+++++.|+++++++|||
T Consensus 108 ~~G~~gGHNGlkSI~~~l-gt-df~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~~i~~~~~~~~~~amn 185 (193)
T 4hoy_A 108 TGGGHGGHNGLRDIVPHI-GP-NFHRLRIGIGHPGSKERVSGHVLGKAPSNEQSLMDGAIDHALSKVKLLVQGQVPQAMN 185 (193)
T ss_dssp ESCCCTTCHHHHTTHHHH-CS-CSEEEEEECCCCSSGGGHHHHHTSBCCHHHHHHHHHHHHHHHHTHHHHHTTCHHHHHH
T ss_pred cCCCCCCcCCccchhhHh-cc-ccceEEEeeCCCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 999999999999999999 67 7999999999999888999999999999999999999999999999999999999999
Q ss_pred hhhhhhH
Q 030459 160 HFNTIQK 166 (177)
Q Consensus 160 ~~n~~~~ 166 (177)
+||++++
T Consensus 186 ~~n~~kp 192 (193)
T 4hoy_A 186 QINAYKP 192 (193)
T ss_dssp HHHTCCC
T ss_pred HHhCCCC
Confidence 9998754
No 5
>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A
Probab=100.00 E-value=1.8e-62 Score=404.32 Aligned_cols=163 Identities=55% Similarity=1.000 Sum_probs=151.6
Q ss_pred CHHHHHHHcCCCCcccccceeEEEEEECCeeEEEEecCcccccccccHHHHHHhcCCCCCcEEEEEecCCCCCceEEEec
Q 030459 1 MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRH 80 (177)
Q Consensus 1 viD~la~~~~~~~~~~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~~V~~~~~~~ki~~~~ilVihDdldl~~G~irlk~ 80 (177)
+||+||+++++++.+.+|+++++++.+.+++|+|+||+||||+||++|+++++||+|++++|||||||||||+|++|+|.
T Consensus 41 viD~La~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~sV~~~~~~yki~~~~ilVihDdLdLp~G~iRlk~ 120 (205)
T 1ryb_A 41 MVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQK 120 (205)
T ss_dssp HHHHHHHHTTCCCCEEETTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHHTTCCGGGEEEEEEETTSCTTCEEEES
T ss_pred HHHHHHHHcCCCcccccccEEEEEEEECCEEEEEEcCCchhhccCHHHHHHHHHhCCCHHHEEEEeecccCCCCeEEEee
Confidence 58999999999998778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCchhhHHHhhcCCCCcceEEEeecCCCCCCCccccccCcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHh
Q 030459 81 NGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARH 160 (177)
Q Consensus 81 gGs~~GHNGlkSI~~~l~gt~~f~RlrIGIGrp~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~~~~~~~~~~~~~amn~ 160 (177)
+||+|||||||||+++|.||++|+|||||||||+.+.++++|||++|+++|++.|+++++.|++|++.|+++++++|||+
T Consensus 121 gGs~gGHNGLkSI~~~L~gt~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~a~~~~~~~~~~~amn~ 200 (205)
T 1ryb_A 121 KGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSGSTER 200 (205)
T ss_dssp SCCCTTCHHHHHHHHHTTTCCCSCEEEEECCCCSTTCCHHHHHTSBCCHHHHHHHHHHHHHHHHHHHHHHHHC-----CC
T ss_pred CCCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCchhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 99999999999999999338999999999999976567999999999999999999999999999999999999999999
Q ss_pred hhh
Q 030459 161 FNT 163 (177)
Q Consensus 161 ~n~ 163 (177)
||.
T Consensus 201 ~n~ 203 (205)
T 1ryb_A 201 FNL 203 (205)
T ss_dssp CCC
T ss_pred Hhc
Confidence 996
No 6
>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics center for infectious DI RNA; HET: CIT; 1.65A {Burkholderia thailandensis E264}
Probab=100.00 E-value=5.7e-62 Score=405.40 Aligned_cols=164 Identities=30% Similarity=0.556 Sum_probs=151.8
Q ss_pred CHHHHHHHcCCCCcc-cccceeEEEEEECCeeEEEEecCcccccccccHHHHHHhcCCCCCcEEEEEecCCCCCceEEEe
Q 030459 1 MIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 79 (177)
Q Consensus 1 viD~la~~~~~~~~~-~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~~V~~~~~~~ki~~~~ilVihDdldl~~G~irlk 79 (177)
+||+||++++++|.+ ++|.++++++.+.+++|+|+||+||||+||++|+++++||+|+|++|||||||||||+|++|+|
T Consensus 47 vvD~La~~~~~~~~~~~kf~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~yki~~e~ilVihDdLDLp~G~iRlk 126 (222)
T 3v2i_A 47 LVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLEPQTYMNRSGQSVVALAHFFKILPNEILVAHDELDLPPGAVKLK 126 (222)
T ss_dssp HHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHHHTCCGGGEEEEEEETTSCTTCEEEE
T ss_pred HHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhcccHHHHHHHHHhCCCHHHEEEEEecCCCCCceEEEe
Confidence 589999999999876 4689999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCchhhHHHhhcCCCCcceEEEeecCC----------CCCCCccccccCcCCHHHHHHHHHHHHHHHHHHHHH
Q 030459 80 HNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRP----------PGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLL 149 (177)
Q Consensus 80 ~gGs~~GHNGlkSI~~~l~gt~~f~RlrIGIGrp----------~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~~~~~~ 149 (177)
.+||+|||||||||+++| ||++|+||||||||| +.+.++++|||++|+++|++.|+++++.|++|++.|
T Consensus 127 ~gGs~gGHNGLKSI~~~L-gt~~f~RlRIGIGrP~~~~p~~~~~~~~~~v~~yVL~~fs~~E~~~l~~~i~~a~~av~~~ 205 (222)
T 3v2i_A 127 LGGGSGGHNGLKDISAHL-SSQQYWRLRIGIGHPRDMIPESARAGAKPDVANFVLKPPRKEEQDVIDAAIERALAVMPAV 205 (222)
T ss_dssp ECCCCTTCHHHHHHHHHH-TCCCSEEEEEECCCTTTTCC---------CHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHh-CCCCeEEEEEEcCCCcccccccccCCCCCcHHHHhccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 799999999999999 556789999999999999999999999999999999
Q ss_pred HhcCHHHHHHhhhhhh
Q 030459 150 LSKGLTESARHFNTIQ 165 (177)
Q Consensus 150 ~~~~~~~amn~~n~~~ 165 (177)
+++++++|||+||++.
T Consensus 206 ~~~~~~~amn~~n~~~ 221 (222)
T 3v2i_A 206 VKGETERAMMQLHRNG 221 (222)
T ss_dssp HTTCHHHHHHHC----
T ss_pred HHCCHHHHHHHHhCCC
Confidence 9999999999999753
No 7
>3nea_A PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella tularensis subsp}
Probab=100.00 E-value=5.4e-62 Score=401.89 Aligned_cols=160 Identities=30% Similarity=0.576 Sum_probs=154.5
Q ss_pred CHHHHHHHcCCCCccc-ccceeEEEEEECCeeEEEEecCcccccccccHHHHHHhcCCCCCcEEEEEecCCCCCceEEEe
Q 030459 1 MIDAFAESQGISMNTV-HCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 79 (177)
Q Consensus 1 viD~la~~~~~~~~~~-k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~~V~~~~~~~ki~~~~ilVihDdldl~~G~irlk 79 (177)
+||+||++++++|.+. ||.++++++.+++++++|+||+||||+||++|+++++||+|+|++|||||||||||+|++|+|
T Consensus 47 vvD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~yki~~e~ilVihDdLDLp~G~iRlk 126 (207)
T 3nea_A 47 FIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVVLVFPTTYMNNSGLAVSKVANFYKIAPAEILVVHDELDIDSGEIRLK 126 (207)
T ss_dssp HHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEESSCGGGHHHHHHHHHHHHTCCGGGEEEEEEETTSCTTCEEEE
T ss_pred HHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEeCCcchhCCcHHHHHHHHHhCCCHHHEEEEEEcCCCCCceEEEe
Confidence 5899999999998765 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCchhhHHHhhcCCCCcceEEEeecCCCCCCCccccccCcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 030459 80 HNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESAR 159 (177)
Q Consensus 80 ~gGs~~GHNGlkSI~~~l~gt~~f~RlrIGIGrp~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~~~~~~~~~~~~~amn 159 (177)
.+||+|||||||||+++| ||++|+|||||||||+.+.++++|||++|+++|++.|+++++.|++|++.|+++++++|||
T Consensus 127 ~gGs~gGHNGLkSIi~~L-gt~~f~RlRiGIGrP~~~~~v~~yVL~~fs~~E~~~l~~~i~~a~~a~~~~~~~~~~~amn 205 (207)
T 3nea_A 127 KGGGHGGHNGLRSINQHL-GTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKDIDSAIDNGICFLDDIINYKLEPVMQ 205 (207)
T ss_dssp ESCCCTTCHHHHHHHHHH-TCCCSEEEEEECCCCSSGGGHHHHHTSCCCHHHHHHHHHHHHHHHHTHHHHHTTCCCSCST
T ss_pred cCCCCCCCCCHHHHHHHh-CCCCeeEEEEEeCCCCCCCchHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHh
Confidence 999999999999999999 7999999999999998878999999999999999999999999999999999999999998
Q ss_pred hh
Q 030459 160 HF 161 (177)
Q Consensus 160 ~~ 161 (177)
++
T Consensus 206 ~~ 207 (207)
T 3nea_A 206 KL 207 (207)
T ss_dssp TC
T ss_pred cC
Confidence 74
No 8
>4fno_A PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas aeruginosa} PDB: 4djj_A* 4erx_A 4dhw_A
Probab=100.00 E-value=1.8e-63 Score=407.45 Aligned_cols=164 Identities=32% Similarity=0.580 Sum_probs=155.9
Q ss_pred CHHHHHHHcCCCCc-ccccceeEEEEEECCeeEEEEecCcccccccccHHHHHHhcCCCCCcEEEEEecCCCCCceEEEe
Q 030459 1 MIDAFAESQGISMN-TVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 79 (177)
Q Consensus 1 viD~la~~~~~~~~-~~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~~V~~~~~~~ki~~~~ilVihDdldl~~G~irlk 79 (177)
+||+||+++++++. +.+|+++++++.+.+++|+|+||+||||+||++|+++++||+|++++|||||||||||+|++|+|
T Consensus 28 viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~fyki~~~~ilVihDdldLp~G~irlk 107 (194)
T 4fno_A 28 FVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLK 107 (194)
Confidence 68999999999986 45789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCchhhHHHhhcCC-CCcceEEEeecCCCCCCCccccccCcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Q 030459 80 HNGGHGGHNGLKSVMNNFRGN-REFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESA 158 (177)
Q Consensus 80 ~gGs~~GHNGlkSI~~~l~gt-~~f~RlrIGIGrp~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~~~~~~~~~~~~~am 158 (177)
.+||+|||||||||+++| || ++|+|||||||||+.+.++++|||++|+++|++.|+++++.|++|++.|+++++++||
T Consensus 108 ~gGs~gGHNGLkSI~~~L-gt~~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~a~~~~~~~~~~~am 186 (194)
T 4fno_A 108 TGGGHGGHNGLRDIIAQL-GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAGDWTRAM 186 (194)
Confidence 999999999999999999 79 8999999999999655579999999999999999999999999999999999999999
Q ss_pred Hhhhhhh
Q 030459 159 RHFNTIQ 165 (177)
Q Consensus 159 n~~n~~~ 165 (177)
|+||..+
T Consensus 187 n~~n~~k 193 (194)
T 4fno_A 187 QKLHSQK 193 (194)
Confidence 9999743
No 9
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=60.80 E-value=2.7 Score=30.64 Aligned_cols=41 Identities=29% Similarity=0.453 Sum_probs=29.7
Q ss_pred EEEEecCCCCCceEEEe--cCCCCCCCCchhhHHHhhcCCCCcceEEEeec
Q 030459 63 LVFHDDMGLPCGVLRLR--HNGGHGGHNGLKSVMNNFRGNREFARLRIGIG 111 (177)
Q Consensus 63 lVihDdldl~~G~irlk--~gGs~~GHNGlkSI~~~l~gt~~f~RlrIGIG 111 (177)
|.|.+++++|...++++ +++|+||+|= +.++.=.||+.=+.
T Consensus 2 l~i~~~i~I~~~dl~~~~~RssGpGGQnV--------NKv~SaV~L~~d~~ 44 (108)
T 2jva_A 2 LVISNNVHLPDAEIELTAIRAQGAGGQNV--------NKVSSAMHLRFDIN 44 (108)
T ss_dssp EECSSSCEECGGGEEEEECCCTTCSSSSS--------CCCCCCEEEEEETT
T ss_pred cccccccccChHHEEEEEEECCCCCCCCc--------CCCcceEEEEEEcc
Confidence 45667888898888876 5888999882 33445678887664
No 10
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=56.67 E-value=5.7 Score=24.26 Aligned_cols=41 Identities=12% Similarity=0.213 Sum_probs=25.2
Q ss_pred ecCCCCCCCcccccc-CcCCHHHHHHHHHHHHHHHHHHHHHH
Q 030459 110 IGRPPGQMDPKAFLL-QKFNAIARERIDTALQEGVEVLKLLL 150 (177)
Q Consensus 110 IGrp~~~~~v~~yVL-~~f~~~E~~~l~~~i~~a~~~~~~~~ 150 (177)
.|||......-+.++ =+++++|.+.|+.....+.--+..|+
T Consensus 4 ~~R~k~~~r~r~~~i~vRlt~eE~~~l~~~A~~~g~s~Seyi 45 (51)
T 2ba3_A 4 AVRKKSEVRQKTVVRTLRFSPVEDETIRKKAEDSGLTVSAYI 45 (51)
T ss_dssp TTBCTTCCCCCSEEEEEEECHHHHHHHHHHHHHHTCCHHHHH
T ss_pred ccCCCCCCCcCceeEEEEECHHHHHHHHHHHHHhCCCHHHHH
Confidence 578865423334444 49999999999876665433333333
No 11
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=55.01 E-value=2.2 Score=32.55 Aligned_cols=41 Identities=24% Similarity=0.450 Sum_probs=29.0
Q ss_pred EEEEecCCCCCceEEEe--cCCCCCCCCchhhHHHhhcCCCCcceEEEeec
Q 030459 63 LVFHDDMGLPCGVLRLR--HNGGHGGHNGLKSVMNNFRGNREFARLRIGIG 111 (177)
Q Consensus 63 lVihDdldl~~G~irlk--~gGs~~GHNGlkSI~~~l~gt~~f~RlrIGIG 111 (177)
|.|.+++++|...+++. ..+|+||+|- +.++.=++|++=|.
T Consensus 2 ~~i~~~i~I~~~el~~~~~RssGpGGQnV--------NKv~SaV~L~~~~~ 44 (140)
T 4dh9_Y 2 IVISRHVAIPDGELEITAIRAQGAGGQHV--------NKTSTAIHLRFDIR 44 (140)
T ss_dssp CCCCSSSCCCTTCSEEEEECCCSSSSHHH--------HTTCCCEEEEECCS
T ss_pred ccccCCCccChHHeEEEEEECCCCCCCcc--------ccccceEEEEEecc
Confidence 45678999999888876 5788999762 23444577777553
No 12
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=45.16 E-value=18 Score=30.64 Aligned_cols=36 Identities=17% Similarity=0.121 Sum_probs=28.7
Q ss_pred cCcccccccccHHHHHHhcCCCCCcEEEEEecCCCC
Q 030459 37 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLP 72 (177)
Q Consensus 37 P~TyMN~SG~~V~~~~~~~ki~~~~ilVihDdldl~ 72 (177)
|...|=-|-+...+++..++|..++.||||||-..-
T Consensus 90 ~~ph~LP~~~~f~~~l~~lGI~~d~~VVvYD~~~~~ 125 (327)
T 3utn_X 90 PYPHMFPTKKVFDDAMSNLGVQKDDILVVYDRVGNF 125 (327)
T ss_dssp SSTTCCCCHHHHHHHHHHTTCCTTCEEEEECSSSSS
T ss_pred CCCCCCcCHHHHHHHHHHcCCCCCCEEEEEeCCCCc
Confidence 334555666778889999999999999999997754
No 13
>2inw_A Putative structural protein; Q83JN9 X-RAY NESG SFR137, structural genomics, PSI-2, protei structure initiative; 1.50A {Shigella flexneri} SCOP: d.110.8.1 PDB: 2h28_A
Probab=42.19 E-value=34 Score=25.72 Aligned_cols=30 Identities=23% Similarity=0.401 Sum_probs=26.2
Q ss_pred cCcCCHHHHHHHHHHHHHHHHHHHHHHhcC
Q 030459 124 LQKFNAIARERIDTALQEGVEVLKLLLSKG 153 (177)
Q Consensus 124 L~~f~~~E~~~l~~~i~~a~~~~~~~~~~~ 153 (177)
-+.||++|...|+++++..++-+|..+..|
T Consensus 51 ~G~Fs~~~~~~Ld~aFP~~ikQlE~mL~sG 80 (133)
T 2inw_A 51 RGRFSDVDAYHLDQAFPLLMKQLELMLTGG 80 (133)
T ss_dssp ESCCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEecCHHHHHHHHHHhHHHHHHHHHHhccc
Confidence 389999999999999999999888877643
No 14
>2ea9_A JW2626, hypothetical protein YFJZ; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Escherichia coli} SCOP: d.110.8.1 PDB: 2jn7_A
Probab=42.14 E-value=27 Score=25.26 Aligned_cols=30 Identities=17% Similarity=0.346 Sum_probs=26.1
Q ss_pred cCcCCHHHHHHHHHHHHHHHHHHHHHHhcC
Q 030459 124 LQKFNAIARERIDTALQEGVEVLKLLLSKG 153 (177)
Q Consensus 124 L~~f~~~E~~~l~~~i~~a~~~~~~~~~~~ 153 (177)
-+.||++|...|+++++..++-+|..+..|
T Consensus 37 ~G~Fs~~~~~~Ld~aFP~~ikqlE~mL~sG 66 (105)
T 2ea9_A 37 TGKFSDAECPKLDVVFPHFISQIESMLTTG 66 (105)
T ss_dssp ESCCCTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred eEecCHHHHHHHHHHhHHHHHHHHHHhccC
Confidence 389999999999999999999888877643
No 15
>1am7_A Lysozyme; glycosidase, transglycosylase, evolution; HET: TRN; 2.30A {Enterobacteria phage lambda} SCOP: d.2.1.4 PDB: 1d9u_A* 3d3d_A*
Probab=34.75 E-value=43 Score=25.78 Aligned_cols=41 Identities=7% Similarity=0.142 Sum_probs=30.8
Q ss_pred ccCcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHhhhh
Q 030459 123 LLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNT 163 (177)
Q Consensus 123 VL~~f~~~E~~~l~~~i~~a~~~~~~~~~~~~~~amn~~n~ 163 (177)
=|..|+|+-++.+.-.+-+-..++..+...+++.||+++..
T Consensus 82 gl~~F~P~~QD~~A~~Li~~rgal~~i~~G~i~~a~~~la~ 122 (158)
T 1am7_A 82 GLKDFSPKSQDAVALQQIKERGALPMIDRGDIRQAIDRCSN 122 (158)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTTCHHHHHHTCHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHcCcHHHHHcCCHHHHHHHhcc
Confidence 36689999999876443334457888888899999987764
No 16
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=33.91 E-value=50 Score=23.34 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=25.1
Q ss_pred ccccCcCCHHHHHHHHHHHHHHHHHHHHHH
Q 030459 121 AFLLQKFNAIARERIDTALQEGVEVLKLLL 150 (177)
Q Consensus 121 ~yVL~~f~~~E~~~l~~~i~~a~~~~~~~~ 150 (177)
+++++.|+++|.+.+..++....+.++.+.
T Consensus 118 ~~~~~~l~~~e~~~l~~~l~~l~~~l~~~~ 147 (149)
T 4hbl_A 118 SCLPQEFDTTEYDETKYVFEELEQTLKHLI 147 (149)
T ss_dssp TTSCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 448899999999999999888888777654
No 17
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=33.32 E-value=28 Score=20.84 Aligned_cols=39 Identities=18% Similarity=0.047 Sum_probs=21.8
Q ss_pred cCCCCCCCcccc-ccCcCCHHHHHHHHHHHHHHHHHHHHHHh
Q 030459 111 GRPPGQMDPKAF-LLQKFNAIARERIDTALQEGVEVLKLLLS 151 (177)
Q Consensus 111 Grp~~~~~v~~y-VL~~f~~~E~~~l~~~i~~a~~~~~~~~~ 151 (177)
|||.. ..... +-=+++++..+.|+............++.
T Consensus 1 GRP~~--~~~~~~i~vrl~~el~~~l~~~a~~~g~s~s~~ir 40 (55)
T 2k9i_A 1 GRPYK--LLNGIKLGVYIPQEWHDRLMEIAKEKNLTLSDVCR 40 (55)
T ss_dssp CCCSS--TTCCEEEEEEECHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCC--CCccceEEEEcCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 78853 22222 33378889988888765443333333333
No 18
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=30.67 E-value=31 Score=22.83 Aligned_cols=32 Identities=19% Similarity=0.164 Sum_probs=27.4
Q ss_pred ccccHHHHHHhcCCCCCcEEEEEecCCCCCce
Q 030459 44 SGESTGPLAAYYKLPLNRVLVFHDDMGLPCGV 75 (177)
Q Consensus 44 SG~~V~~~~~~~ki~~~~ilVihDdldl~~G~ 75 (177)
.|.+|+.+++.++++++.++|+.+.--+|...
T Consensus 19 ~g~Tv~dLL~~Lgl~~~~VvV~vNG~~v~~d~ 50 (74)
T 2l32_A 19 DDGTYADLVRAVDLSPHEVTVLVDGRPVPEDQ 50 (74)
T ss_dssp TTCSHHHHHHTTCCCSSCCCEECCCCCCCTTS
T ss_pred CCCcHHHHHHHcCCCcceEEEEECCEECCHHH
Confidence 46789999999999999999988887777765
No 19
>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}
Probab=30.24 E-value=31 Score=25.01 Aligned_cols=29 Identities=7% Similarity=0.172 Sum_probs=25.5
Q ss_pred ccccHHHHHHhcCCCCCcEEEEEecC--CCC
Q 030459 44 SGESTGPLAAYYKLPLNRVLVFHDDM--GLP 72 (177)
Q Consensus 44 SG~~V~~~~~~~ki~~~~ilVihDdl--dl~ 72 (177)
.+..+..+++.++++|+++++|-|.+ |+.
T Consensus 159 k~~~~~~~~~~lgi~~~~~i~iGD~~~~Di~ 189 (234)
T 3ddh_A 159 TEKEYLRLLSILQIAPSELLMVGNSFKSDIQ 189 (234)
T ss_dssp SHHHHHHHHHHHTCCGGGEEEEESCCCCCCH
T ss_pred CHHHHHHHHHHhCCCcceEEEECCCcHHHhH
Confidence 67888999999999999999999986 554
No 20
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=30.10 E-value=62 Score=22.33 Aligned_cols=31 Identities=10% Similarity=0.019 Sum_probs=21.9
Q ss_pred cccccCcCCHHHHHHHHHHHHHHHHHHHHHH
Q 030459 120 KAFLLQKFNAIARERIDTALQEGVEVLKLLL 150 (177)
Q Consensus 120 ~~yVL~~f~~~E~~~l~~~i~~a~~~~~~~~ 150 (177)
.+.+++.++++|.+.+..++....+.++..+
T Consensus 108 ~~~~~~~l~~~e~~~l~~~l~~l~~~l~~~~ 138 (144)
T 1lj9_A 108 NQVALQGLSEVEISQLADYLVRMRKNVSEDW 138 (144)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhHHHHH
Confidence 3556778888888888777777776665544
No 21
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=29.64 E-value=28 Score=26.85 Aligned_cols=25 Identities=16% Similarity=0.393 Sum_probs=22.4
Q ss_pred cccHHHHHHhcCCCCCcEEEEEecC
Q 030459 45 GESTGPLAAYYKLPLNRVLVFHDDM 69 (177)
Q Consensus 45 G~~V~~~~~~~ki~~~~ilVihDdl 69 (177)
|.++..+++.+++++++++.|-|..
T Consensus 196 ~~~l~~l~~~lgi~~~~~ia~GD~~ 220 (268)
T 3r4c_A 196 ATGLSLFADYYRVKVSEIMACGDGG 220 (268)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEECSG
T ss_pred HHHHHHHHHHcCCCHHHEEEECCcH
Confidence 5788999999999999999999954
No 22
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=29.36 E-value=71 Score=22.41 Aligned_cols=30 Identities=10% Similarity=0.074 Sum_probs=20.9
Q ss_pred cccccCcCCHHHHHHHHHHHHHHHHHHHHH
Q 030459 120 KAFLLQKFNAIARERIDTALQEGVEVLKLL 149 (177)
Q Consensus 120 ~~yVL~~f~~~E~~~l~~~i~~a~~~~~~~ 149 (177)
.+.+++.|+++|.+.+..++....+.++.+
T Consensus 118 ~~~~~~~l~~~e~~~l~~~l~~l~~~l~~~ 147 (151)
T 3kp7_A 118 ASDMTSDFDSKEIEKVRQVLEIIDYRIQSY 147 (151)
T ss_dssp HHHTTTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 355677788888887777777766666554
No 23
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0
Probab=28.97 E-value=29 Score=26.68 Aligned_cols=25 Identities=16% Similarity=0.280 Sum_probs=21.9
Q ss_pred cccHHHHHHhcCCCCCcEEEEEecC
Q 030459 45 GESTGPLAAYYKLPLNRVLVFHDDM 69 (177)
Q Consensus 45 G~~V~~~~~~~ki~~~~ilVihDdl 69 (177)
|.++..+++.++++++++++|-|..
T Consensus 202 ~~~l~~l~~~lgi~~~~~i~~GD~~ 226 (274)
T 3fzq_A 202 GKAIKRLQERLGVTQKETICFGDGQ 226 (274)
T ss_dssp HHHHHHHHHHHTCCSTTEEEECCSG
T ss_pred HHHHHHHHHHcCCCHHHEEEECCCh
Confidence 5678899999999999999998854
No 24
>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Probab=28.15 E-value=30 Score=27.27 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=22.1
Q ss_pred ccccHHHHHHhcCCCCCcEEEEEec
Q 030459 44 SGESTGPLAAYYKLPLNRVLVFHDD 68 (177)
Q Consensus 44 SG~~V~~~~~~~ki~~~~ilVihDd 68 (177)
-|.++..+++.++++++++++|-|.
T Consensus 212 K~~~l~~l~~~lgi~~~e~ia~GD~ 236 (283)
T 3dao_A 212 KWTALSYLIDRFDLLPDEVCCFGDN 236 (283)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEECS
T ss_pred HHHHHHHHHHHhCCCHHHEEEECCC
Confidence 3568899999999999999999984
No 25
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0
Probab=27.95 E-value=31 Score=26.94 Aligned_cols=58 Identities=12% Similarity=0.182 Sum_probs=38.4
Q ss_pred ccccHHHHHHhcCCCCCcEEEEEecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCcceEEEeecCCCC-CCCcccc
Q 030459 44 SGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPG-QMDPKAF 122 (177)
Q Consensus 44 SG~~V~~~~~~~ki~~~~ilVihDdldl~~G~irlk~gGs~~GHNGlkSI~~~l~gt~~f~RlrIGIGrp~~-~~~v~~y 122 (177)
-|.++..+++.++++++++++|-|. .|.+.-+ +.. | +.+.+|.... -...++|
T Consensus 203 K~~~l~~l~~~lgi~~~~~i~~GD~------------------~NDi~m~-~~a-g------~~vam~na~~~~k~~Ad~ 256 (290)
T 3dnp_A 203 KEAGLALVASELGLSMDDVVAIGHQ------------------YDDLPMI-ELA-G------LGVAMGNAVPEIKRKADW 256 (290)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEECS------------------GGGHHHH-HHS-S------EEEECTTSCHHHHHHSSE
T ss_pred HHHHHHHHHHHcCCCHHHEEEECCc------------------hhhHHHH-Hhc-C------CEEEecCCcHHHHHhcCE
Confidence 3667889999999999999999994 4555432 222 2 4555554221 1246799
Q ss_pred ccCcC
Q 030459 123 LLQKF 127 (177)
Q Consensus 123 VL~~f 127 (177)
|....
T Consensus 257 v~~s~ 261 (290)
T 3dnp_A 257 VTRSN 261 (290)
T ss_dssp ECCCT
T ss_pred ECCCC
Confidence 98644
No 26
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Probab=27.44 E-value=30 Score=26.87 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=22.6
Q ss_pred cccHHHHHHhcCCCCCcEEEEEecC
Q 030459 45 GESTGPLAAYYKLPLNRVLVFHDDM 69 (177)
Q Consensus 45 G~~V~~~~~~~ki~~~~ilVihDdl 69 (177)
|.++..+++.++++++++++|=|..
T Consensus 199 ~~~l~~l~~~lgi~~~~~i~~GD~~ 223 (279)
T 4dw8_A 199 ALSLSVLLENIGMTREEVIAIGDGY 223 (279)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEECSG
T ss_pred HHHHHHHHHHcCCCHHHEEEECCCh
Confidence 7888999999999999999999853
No 27
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}
Probab=27.11 E-value=32 Score=27.06 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.4
Q ss_pred cccHHHHHHhcCCCCCcEEEEEecC
Q 030459 45 GESTGPLAAYYKLPLNRVLVFHDDM 69 (177)
Q Consensus 45 G~~V~~~~~~~ki~~~~ilVihDdl 69 (177)
|.++..+++.++++++++++|-|..
T Consensus 211 ~~al~~l~~~lgi~~~~~ia~GD~~ 235 (285)
T 3pgv_A 211 GHALEAVAKMLGYTLSDCIAFGDGM 235 (285)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEECSG
T ss_pred HHHHHHHHHHhCCCHHHEEEECCcH
Confidence 6788999999999999999999954
No 28
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=27.09 E-value=1.4e+02 Score=22.62 Aligned_cols=36 Identities=14% Similarity=0.132 Sum_probs=24.2
Q ss_pred cCcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHh
Q 030459 124 LQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARH 160 (177)
Q Consensus 124 L~~f~~~E~~~l~~~i~~a~~~~~~~~~~~~~~amn~ 160 (177)
|+.++++|++.|.+++.+..+ ++..-++.+.+..++
T Consensus 14 Ls~LteeEr~~Il~VL~Rd~~-l~~~EeeRi~kLk~~ 49 (153)
T 2zet_C 14 LSTLTDEEAEHVWAVVQRDFD-LRRREEERLQGLKGK 49 (153)
T ss_dssp CTTSCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHhHHH-HHHhHHHHHHHHHHH
Confidence 789999999999999988544 333333344444444
No 29
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=27.02 E-value=42 Score=24.51 Aligned_cols=31 Identities=10% Similarity=-0.015 Sum_probs=20.3
Q ss_pred cccccCcCCHHHHHHHHHHHHHHHHHHHHHH
Q 030459 120 KAFLLQKFNAIARERIDTALQEGVEVLKLLL 150 (177)
Q Consensus 120 ~~yVL~~f~~~E~~~l~~~i~~a~~~~~~~~ 150 (177)
.+.+++.|+++|++.+..++....+.++.+.
T Consensus 133 ~~~~~~~l~~~e~~~l~~~L~~l~~~l~~~~ 163 (166)
T 3deu_A 133 RGEILAGISSEEIELLIKLIAKLEHNIMELH 163 (166)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777777666665543
No 30
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0
Probab=26.64 E-value=27 Score=27.07 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=20.6
Q ss_pred ccccHHHHHHhcCCCCCcEEEEEec
Q 030459 44 SGESTGPLAAYYKLPLNRVLVFHDD 68 (177)
Q Consensus 44 SG~~V~~~~~~~ki~~~~ilVihDd 68 (177)
-|.++..+++.++++++++++|-|.
T Consensus 198 K~~~l~~l~~~lgi~~~~~i~~GD~ 222 (279)
T 3mpo_A 198 KGGTLSELVDQLGLTADDVMTLGDQ 222 (279)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEC--C
T ss_pred hHHHHHHHHHHcCCCHHHEEEECCc
Confidence 4778899999999999999999884
No 31
>1w94_A MIL, probable BRIX-domain ribosomal biogenesis protein; archaeal IMP4-BRIX domain, IMP4 domain; 2.0A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.2
Probab=26.55 E-value=55 Score=24.81 Aligned_cols=32 Identities=22% Similarity=0.214 Sum_probs=24.8
Q ss_pred CcccccccccHHHHHHhcCCCCCcEEEEEecCCCC
Q 030459 38 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLP 72 (177)
Q Consensus 38 ~TyMN~SG~~V~~~~~~~ki~~~~ilVihDdldl~ 72 (177)
.+|+|+.+.++.++++.+. .+++|||..-.-|
T Consensus 27 ~~~v~Rgk~sl~~L~~~~~---~~~iVV~e~rg~P 58 (156)
T 1w94_A 27 WRYINRGKMSLRDVLIEAR---GPVAVVSERHGNP 58 (156)
T ss_dssp CEECCCTTCCHHHHHHHHS---SCEEEEEEETTEE
T ss_pred CEEEeeCCcCHHHHHHhcC---CCEEEEEcCCCCC
Confidence 4799999999999988774 3488888877433
No 32
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=26.48 E-value=47 Score=22.88 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=18.9
Q ss_pred HHHhcCCCCCcEEEEEecCCCCCc
Q 030459 51 LAAYYKLPLNRVLVFHDDMGLPCG 74 (177)
Q Consensus 51 ~~~~~ki~~~~ilVihDdldl~~G 74 (177)
+.+..+++++++.|..+|++ ..|
T Consensus 84 l~~~lgi~~~~v~I~~~e~~-~wg 106 (112)
T 3b64_A 84 ITKECGIVADRIFVLYFSPL-HCG 106 (112)
T ss_dssp HHHHHCCCGGGEEEEEECCS-CCE
T ss_pred HHHHhCcCcceEEEEEEEhh-Hee
Confidence 44467999999999999998 665
No 33
>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A {Streptococcus mutans}
Probab=26.47 E-value=33 Score=27.32 Aligned_cols=57 Identities=11% Similarity=0.198 Sum_probs=37.8
Q ss_pred cccHHHHHHhcCCCCCcEEEEEecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCcceEEEeecCCCC-CCCccccc
Q 030459 45 GESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPG-QMDPKAFL 123 (177)
Q Consensus 45 G~~V~~~~~~~ki~~~~ilVihDdldl~~G~irlk~gGs~~GHNGlkSI~~~l~gt~~f~RlrIGIGrp~~-~~~v~~yV 123 (177)
|.++..+++.++++++++++|=|. .|.+.- .+.. | +.+.+|.... -...++||
T Consensus 230 ~~al~~l~~~lgi~~~e~i~~GDs------------------~NDi~m-~~~a-g------~~vam~na~~~~k~~Ad~v 283 (304)
T 3l7y_A 230 GWALQQLLKRWNFTSDHLMAFGDG------------------GNDIEM-LKLA-K------YSYAMANAPKNVKAAANYQ 283 (304)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEECS------------------GGGHHH-HHHC-T------EEEECTTSCHHHHHHCSEE
T ss_pred HHHHHHHHHHhCcCHHHEEEECCC------------------HHHHHH-HHhc-C------CeEEcCCcCHHHHHhccEE
Confidence 457899999999999999999995 355533 2222 2 5555565321 12457999
Q ss_pred cCcC
Q 030459 124 LQKF 127 (177)
Q Consensus 124 L~~f 127 (177)
....
T Consensus 284 ~~~~ 287 (304)
T 3l7y_A 284 AKSN 287 (304)
T ss_dssp CCCG
T ss_pred cCCC
Confidence 8743
No 34
>4gib_A Beta-phosphoglucomutase; rossmann fold, HAD-like, structural genomics, center for structural genomics of infectious DISE csgid, isomerase; 2.27A {Clostridium difficile}
Probab=26.26 E-value=1.1e+02 Score=23.20 Aligned_cols=68 Identities=12% Similarity=0.115 Sum_probs=41.6
Q ss_pred ccHHHHHHhcCCCCCcEEEEEecCCCCCceEEEecCCCCCCCCchhhHHHhhc-CCCCcceEEEeecCCCCCCCcccccc
Q 030459 46 ESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFR-GNREFARLRIGIGRPPGQMDPKAFLL 124 (177)
Q Consensus 46 ~~V~~~~~~~ki~~~~ilVihDdldl~~G~irlk~gGs~~GHNGlkSI~~~l~-gt~~f~RlrIGIGrp~~~~~v~~yVL 124 (177)
.....+++.++++|+++++|=|.. .+|..+-. | + --|||+++.. ..-++||+
T Consensus 174 ~~~~~a~~~lg~~p~e~l~VGDs~---------------------~Di~aA~~aG---~--~~i~v~~~~~-~~~ad~vi 226 (250)
T 4gib_A 174 EIFLMSAKGLNVNPQNCIGIEDAS---------------------AGIDAINSAN---M--FSVGVGNYEN-LKKANLVV 226 (250)
T ss_dssp HHHHHHHHHHTCCGGGEEEEESSH---------------------HHHHHHHHTT---C--EEEEESCTTT-TTTSSEEE
T ss_pred HHHHHHHHHhCCChHHeEEECCCH---------------------HHHHHHHHcC---C--EEEEECChhH-hccCCEEE
Confidence 345667888899999988887642 23333321 2 2 1468877643 23479999
Q ss_pred CcCCHHHHHHHHHHHH
Q 030459 125 QKFNAIARERIDTALQ 140 (177)
Q Consensus 125 ~~f~~~E~~~l~~~i~ 140 (177)
..+++-..+.|.+..+
T Consensus 227 ~~l~eL~~~~i~~~~n 242 (250)
T 4gib_A 227 DSTNQLKFEYIQEKYN 242 (250)
T ss_dssp SSGGGCCHHHHHHHHH
T ss_pred CChHhCCHHHHHHHHH
Confidence 9887655555544443
No 35
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=26.23 E-value=1.4e+02 Score=19.66 Aligned_cols=39 Identities=8% Similarity=0.096 Sum_probs=23.1
Q ss_pred cCcCCHHHHHHHHHHHHHH----HHHHHHHHhcCHHHHHHhhhh
Q 030459 124 LQKFNAIARERIDTALQEG----VEVLKLLLSKGLTESARHFNT 163 (177)
Q Consensus 124 L~~f~~~E~~~l~~~i~~a----~~~~~~~~~~~~~~amn~~n~ 163 (177)
-++||++|-+.|-+++..- ......+ ...-..+.|+++.
T Consensus 23 k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~ 65 (73)
T 2llk_A 23 VGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRL 65 (73)
T ss_dssp CCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHH
Confidence 4799999998887765542 2222222 4445555555553
No 36
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A
Probab=26.09 E-value=26 Score=26.95 Aligned_cols=57 Identities=14% Similarity=0.221 Sum_probs=37.4
Q ss_pred cccHHHHHHhcCCCCCcEEEEEecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCcceEEEeecCCCCC-CCccccc
Q 030459 45 GESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQ-MDPKAFL 123 (177)
Q Consensus 45 G~~V~~~~~~~ki~~~~ilVihDdldl~~G~irlk~gGs~~GHNGlkSI~~~l~gt~~f~RlrIGIGrp~~~-~~v~~yV 123 (177)
|.++..+++.++++++++++|-|. .|.+.-+. .. | +.+-+|..... ...++||
T Consensus 185 ~~~l~~l~~~lgi~~~~~ia~GDs------------------~NDi~ml~-~a-g------~~vam~na~~~~k~~A~~v 238 (258)
T 2pq0_A 185 AEGIRMMIEKLGIDKKDVYAFGDG------------------LNDIEMLS-FV-G------TGVAMGNAHEEVKRVADFV 238 (258)
T ss_dssp HHHHHHHHHHHTCCGGGEEEECCS------------------GGGHHHHH-HS-S------EEEEETTCCHHHHHTCSEE
T ss_pred HHHHHHHHHHhCCCHHHEEEECCc------------------HHhHHHHH-hC-C------cEEEeCCCcHHHHHhCCEE
Confidence 555899999999999999999884 57765433 22 2 34455542211 2457898
Q ss_pred cCcC
Q 030459 124 LQKF 127 (177)
Q Consensus 124 L~~f 127 (177)
....
T Consensus 239 ~~~~ 242 (258)
T 2pq0_A 239 TKPV 242 (258)
T ss_dssp ECCG
T ss_pred eCCC
Confidence 8654
No 37
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=25.47 E-value=36 Score=24.69 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=22.2
Q ss_pred cCCCCCceEEEe--cCCCCCCCCchhhHHHhhcCCCCcceEEEee
Q 030459 68 DMGLPCGVLRLR--HNGGHGGHNGLKSVMNNFRGNREFARLRIGI 110 (177)
Q Consensus 68 dldl~~G~irlk--~gGs~~GHNGlkSI~~~l~gt~~f~RlrIGI 110 (177)
++++|...++++ +.+|+||+| .+.++.=.|||+=|
T Consensus 14 ~i~I~~~dl~~~~~RssGpGGQn--------VNKv~SaV~Lrf~i 50 (112)
T 1j26_A 14 SSYIPLDRLSISYCRSSGPGGQN--------VNKVNSKAEVRFHL 50 (112)
T ss_dssp CCCCCTTTSEEEEECCCCSSSSC--------CSSCCCEEEEEEEG
T ss_pred EEecChHHeEEEEEECCCCCCCC--------ccCCcceEEEEEec
Confidence 445666665554 688999988 23344557777655
No 38
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=23.41 E-value=1.6e+02 Score=19.37 Aligned_cols=39 Identities=8% Similarity=0.110 Sum_probs=24.1
Q ss_pred CcCCHHHHHHHHHHHHHH-------HHHHHHHHhcCHHHHHHhhhh
Q 030459 125 QKFNAIARERIDTALQEG-------VEVLKLLLSKGLTESARHFNT 163 (177)
Q Consensus 125 ~~f~~~E~~~l~~~i~~a-------~~~~~~~~~~~~~~amn~~n~ 163 (177)
+.||.+|...|++++... -+.|-..+....+.++++|+.
T Consensus 9 ~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lgRt~~eV~~~y~~ 54 (72)
T 2cqq_A 9 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTTKAKQ 54 (72)
T ss_dssp CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhCCCHHHHHHHHHH
Confidence 579999999998876644 233333334455566655543
No 39
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=21.83 E-value=52 Score=20.94 Aligned_cols=39 Identities=23% Similarity=0.344 Sum_probs=15.9
Q ss_pred HHHhcCCCCCcEEEEEe------cCC-----CCCc---eEEEecCCCCCCCCc
Q 030459 51 LAAYYKLPLNRVLVFHD------DMG-----LPCG---VLRLRHNGGHGGHNG 89 (177)
Q Consensus 51 ~~~~~ki~~~~ilVihD------dld-----l~~G---~irlk~gGs~~GHNG 89 (177)
+....++|+++.-++|. |.. +.-| .+-+|..|+.|||.|
T Consensus 33 i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG~ggg~~ 85 (85)
T 3mtn_B 33 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGGGGGGSG 85 (85)
T ss_dssp HHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC------
T ss_pred HHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCCCCCCCC
Confidence 34456777766554443 221 1222 233466777777765
No 40
>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP phosphatase, carbohydrate metabolism, hydrolase; 1.8A {Escherichia coli} SCOP: c.108.1.14
Probab=21.20 E-value=48 Score=24.31 Aligned_cols=26 Identities=8% Similarity=0.001 Sum_probs=21.9
Q ss_pred ccccHHHHHHhcCCCCCcEEEEEecC
Q 030459 44 SGESTGPLAAYYKLPLNRVLVFHDDM 69 (177)
Q Consensus 44 SG~~V~~~~~~~ki~~~~ilVihDdl 69 (177)
.+..+..+++.++++++++++|=|.+
T Consensus 178 k~~~~~~~~~~lgi~~~~~i~iGD~~ 203 (250)
T 2c4n_A 178 SPWIIRAALNKMQAHSEETVIVGDNL 203 (250)
T ss_dssp STHHHHHHHHHHTCCGGGEEEEESCT
T ss_pred CHHHHHHHHHHcCCCcceEEEECCCc
Confidence 35567888999999999999999964
No 41
>2x4d_A HLHPP, phospholysine phosphohistidine inorganic pyrophos phosphatase; hydrolase; 1.92A {Homo sapiens}
Probab=20.98 E-value=51 Score=24.76 Aligned_cols=26 Identities=15% Similarity=0.126 Sum_probs=21.8
Q ss_pred ccccHHHHHHhcCCCCCcEEEEEecC
Q 030459 44 SGESTGPLAAYYKLPLNRVLVFHDDM 69 (177)
Q Consensus 44 SG~~V~~~~~~~ki~~~~ilVihDdl 69 (177)
.+..+..+++.++++++++++|-|..
T Consensus 192 k~~~~~~~~~~lgi~~~~~i~iGD~~ 217 (271)
T 2x4d_A 192 SPEFFKSALQAIGVEAHQAVMIGDDI 217 (271)
T ss_dssp CHHHHHHHHHHHTCCGGGEEEEESCT
T ss_pred CHHHHHHHHHHhCCCcceEEEECCCc
Confidence 35667888999999999999999854
No 42
>2fkc_A R.HINP1I restriction endonuclease; protein dimerizaton, DNA superhelix, protein-DNA-metal ION complex, hydrolase/DNA complex; 2.39A {Haemophilus influenzae} PDB: 1ynm_A 2fkh_B 2fl3_A 2flc_A
Probab=20.68 E-value=20 Score=29.35 Aligned_cols=36 Identities=14% Similarity=0.335 Sum_probs=23.7
Q ss_pred HHHHhcCCCCCcEEEEEecCCCCCceEEEecCCCCCCCC
Q 030459 50 PLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHN 88 (177)
Q Consensus 50 ~~~~~~ki~~~~ilVihDdldl~~G~irlk~gGs~~GHN 88 (177)
.++++|+ +--+.+.--=.+.+|++-+.++||.+||-
T Consensus 195 eVl~hy~---~gdi~~s~kGsik~griTiQRKGGD~gr~ 230 (247)
T 2fkc_A 195 EVLQHYG---SGDISLSPRGSINFGRVTIQRKGGDNGRE 230 (247)
T ss_dssp HHHHHHH---CSCEEECTTSSEEETTEEEEECCCGGGCG
T ss_pred HHHhhcC---CCcEEEccCcceEeeeEEEEeccCCCCCc
Confidence 4555552 12244444555778999999999999884
No 43
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=20.44 E-value=82 Score=21.44 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=16.9
Q ss_pred ccccCcCCHHHHHHHHHHHHHHHHHHH
Q 030459 121 AFLLQKFNAIARERIDTALQEGVEVLK 147 (177)
Q Consensus 121 ~yVL~~f~~~E~~~l~~~i~~a~~~~~ 147 (177)
+.+++.++++|.+.+..++....+.++
T Consensus 109 ~~~~~~l~~~e~~~l~~~l~~~~~~l~ 135 (138)
T 3bpv_A 109 DLLFRDFTEDERKLFRKMCRRLAEEAV 135 (138)
T ss_dssp HHHTTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777666666555543
No 44
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=20.26 E-value=1.1e+02 Score=20.90 Aligned_cols=24 Identities=0% Similarity=-0.075 Sum_probs=12.0
Q ss_pred ccCcCCHHHHHHHHHHHHHHHHHH
Q 030459 123 LLQKFNAIARERIDTALQEGVEVL 146 (177)
Q Consensus 123 VL~~f~~~E~~~l~~~i~~a~~~~ 146 (177)
+++.++++|.+.+..++....+.+
T Consensus 118 ~~~~l~~~e~~~l~~~l~~~~~~l 141 (146)
T 2gxg_A 118 VTGDLSEDEVILVLDKISKILKRI 141 (146)
T ss_dssp HTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHH
Confidence 445555555555555544444433
No 45
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=20.02 E-value=82 Score=21.85 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=16.4
Q ss_pred ccccCcCCHHHHHHHHHHHHHHHHHHH
Q 030459 121 AFLLQKFNAIARERIDTALQEGVEVLK 147 (177)
Q Consensus 121 ~yVL~~f~~~E~~~l~~~i~~a~~~~~ 147 (177)
+.+++.++++|.+.+..++....+.++
T Consensus 120 ~~~~~~l~~~e~~~l~~~l~~l~~~l~ 146 (148)
T 3nrv_A 120 KQLLEEFEEAEKDQLFILLKKLRNKVD 146 (148)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhh
Confidence 445666666666666666665555443
Done!