RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 030459
         (177 letters)



>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor
           Crs2 {Maize (Zea mays) [TaxId: 4577]}
          Length = 191

 Score =  127 bits (319), Expect = 4e-38
 Identities = 90/165 (54%), Positives = 123/165 (74%)

Query: 1   MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
           M+D  A  +GI+MNT+  K+  G G +G+ PVL+ KPQ+YMN SGE+ GPLAAYY++PL 
Sbjct: 27  MVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQVPLR 86

Query: 61  RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
            +L+ +DD  LP GVLRL+  GGHG HNGL++V+ +  G REF RL IGIG PPG+MDP+
Sbjct: 87  HILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPR 146

Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQ 165
           AFLLQKF++  R +IDTAL++GV+ ++ L+ KG + S   FN +Q
Sbjct: 147 AFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSGSTERFNLVQ 191


>d2ptha_ c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia coli
           [TaxId: 562]}
          Length = 193

 Score =  109 bits (273), Expect = 4e-31
 Identities = 52/163 (31%), Positives = 85/163 (52%), Gaps = 1/163 (0%)

Query: 1   MIDAFAESQGISMNTVH-CKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPL 59
            +D  AE     +           +  +G   V L  P T+MNLSG++   +A+++++  
Sbjct: 26  FVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFFRINP 85

Query: 60  NRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDP 119
           + +LV HD++ LP GV + +  GGHGGHNGLK +++    N  F RLRIGIG P  +   
Sbjct: 86  DEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKV 145

Query: 120 KAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFN 162
             F+L K     ++ ID A+ E     ++  + GLT++    +
Sbjct: 146 VGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLTKATNRLH 188


>d1dosa_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase)
           {Escherichia coli [TaxId: 562]}
          Length = 358

 Score = 25.1 bits (54), Expect = 5.5
 Identities = 26/145 (17%), Positives = 53/145 (36%), Gaps = 21/145 (14%)

Query: 11  ISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRV-LVFHDDM 69
            S   VH    +  G V   P +L   Q Y+          +  + LP N +  VFH   
Sbjct: 220 ASFGNVH--GVYKAGNVVLTPTILRDSQEYV----------SKKHNLPHNSLNFVFHGGS 267

Query: 70  GLPCGVLRLRHNGGHGGHN--------GLKSVMNNFRGNREFARLRIGIGRPPGQMDPKA 121
           G     ++   + G    N          + V+N ++ N  + + ++G  +   Q + K 
Sbjct: 268 GSTAQEIKDSVSYGVVKMNIDTDTQWATWEGVLNYYKANEAYLQGQLGNPKGEDQPNKKY 327

Query: 122 FLLQKFNAIARERIDTALQEGVEVL 146
           +  + +    +  +   L++  + L
Sbjct: 328 YDPRVWLRAGQTSMIARLEKAFQEL 352


>d1szqa_ e.44.1.1 (A:) 2-methylcitrate dehydratase PrpD {Escherichia
           coli [TaxId: 562]}
          Length = 473

 Score = 24.5 bits (52), Expect = 8.1
 Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 2/42 (4%)

Query: 110 IGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLS 151
           IG    + D    L+ KF      +  T  Q+   +L++ L 
Sbjct: 416 IGHARRRQDGIPKLVDKFKINLARQFPTRQQQ--RILEVSLD 455


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.139    0.416 

Gapped
Lambda     K      H
   0.267   0.0560    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 649,689
Number of extensions: 28553
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 4
Length of query: 177
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 97
Effective length of database: 1,309,196
Effective search space: 126992012
Effective search space used: 126992012
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.4 bits)