BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030462
         (177 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A8H0P3|TRMN6_SHEPA tRNA1(Val) (adenine(37)-N6)-methyltransferase OS=Shewanella
           pealeana (strain ATCC 700345 / ANG-SQ1) GN=Spea_0803
           PE=3 SV=1
          Length = 264

 Score = 30.4 bits (67), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 11/110 (10%)

Query: 9   LIFATATIFSHAG-SSIISPTE-IKSFEPK--TVQFIAIQKIYPLQLQVAAKSCSYTVII 64
           L+ A   + S  G +S+I PTE +  FE K  T Q    QK+  L   V  K  +  +++
Sbjct: 152 LLAAIKQLLSPEGCASLILPTESVSLFETKLSTYQLELSQKL--LAASVEGKEANRQILV 209

Query: 65  KTSCSS-----KSYTRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTD 109
               S+     K+ T   +     DA   ++YI+  +  YS+ F   S D
Sbjct: 210 LRHTSALAHDPKTETEPAVVAKLEDAAQQQLYIREKNGQYSQAFSLLSRD 259


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.137    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,785,784
Number of Sequences: 539616
Number of extensions: 2324797
Number of successful extensions: 6325
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6325
Number of HSP's gapped (non-prelim): 2
length of query: 177
length of database: 191,569,459
effective HSP length: 110
effective length of query: 67
effective length of database: 132,211,699
effective search space: 8858183833
effective search space used: 8858183833
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 57 (26.6 bits)