Query 030462
Match_columns 177
No_of_seqs 114 out of 152
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 14:05:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030462.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030462hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06232 ATS3: Embryo-specific 100.0 2.2E-48 4.8E-53 303.6 13.2 115 54-168 10-125 (125)
2 cd01754 PLAT_plant_stress PLAT 100.0 8.4E-30 1.8E-34 199.7 13.3 106 58-163 1-121 (129)
3 cd00113 PLAT PLAT (Polycystin- 99.9 4.6E-27 9.9E-32 176.0 13.6 109 58-168 1-114 (116)
4 cd01753 PLAT_LOX PLAT domain o 99.9 5.4E-27 1.2E-31 178.9 12.4 101 59-161 2-106 (113)
5 cd01756 PLAT_repeat PLAT/LH2 d 99.9 4.6E-26 1E-30 174.0 13.4 103 59-162 2-109 (120)
6 cd01752 PLAT_polycystin PLAT/L 99.9 6.3E-26 1.4E-30 173.5 12.9 103 58-161 1-108 (120)
7 cd02899 PLAT_SR Scavenger rece 99.9 9.3E-25 2E-29 166.9 12.1 97 59-160 2-99 (109)
8 smart00308 LH2 Lipoxygenase ho 99.9 1.4E-22 3.1E-27 149.5 13.0 100 59-159 2-104 (105)
9 cd01757 PLAT_RAB6IP1 PLAT/LH2 99.9 3.5E-21 7.5E-26 148.4 12.0 95 59-163 2-101 (114)
10 PF01477 PLAT: PLAT/LH2 domain 99.8 5.6E-21 1.2E-25 140.8 8.3 101 60-163 1-106 (113)
11 cd01755 PLAT_lipase PLAT/ LH2 99.5 2.1E-13 4.6E-18 104.9 11.4 90 58-151 1-102 (120)
12 cd01758 PLAT_LPL PLAT/ LH2 dom 99.2 1.9E-10 4.1E-15 91.2 11.2 75 58-135 1-81 (137)
13 cd01759 PLAT_PL PLAT/LH2 domai 97.3 0.0047 1E-07 47.7 10.3 87 59-151 2-96 (113)
14 KOG2080 Uncharacterized conser 96.9 0.0014 3E-08 65.4 5.4 92 57-160 973-1068(1295)
15 TIGR03230 lipo_lipase lipoprot 96.1 0.062 1.4E-06 50.1 10.4 91 57-151 308-412 (442)
16 cd01751 PLAT_LH2 PLAT/ LH2 dom 79.2 16 0.00035 29.1 8.1 51 110-160 71-125 (137)
17 PF07172 GRP: Glycine rich pro 53.1 9.3 0.0002 28.7 1.7 19 3-21 4-23 (95)
18 PLN02264 lipoxygenase 45.8 79 0.0017 32.7 7.3 51 110-160 159-212 (919)
19 PLN02337 lipoxygenase 38.3 1.1E+02 0.0024 31.5 7.1 51 110-160 96-150 (866)
20 smart00591 RWD domain in RING 36.1 80 0.0017 22.2 4.4 29 41-69 3-34 (107)
21 PF15621 PROL5-SMR: Proline-ri 34.0 23 0.0005 27.7 1.3 23 2-24 1-24 (113)
22 PRK02710 plastocyanin; Provisi 32.9 1.1E+02 0.0025 22.9 5.0 12 1-12 1-12 (119)
23 KOG1693 emp24/gp25L/p24 family 32.7 1.9E+02 0.0041 25.0 6.6 32 55-92 44-75 (209)
24 PRK15346 outer membrane secret 32.4 32 0.00069 32.4 2.2 23 1-23 1-24 (499)
25 PF13956 Ibs_toxin: Toxin Ibs, 29.2 32 0.00069 18.9 1.0 8 1-8 1-8 (19)
26 KOG4063 Major epididymal secre 28.8 1.1E+02 0.0024 25.3 4.4 60 53-117 40-108 (158)
27 PF10295 DUF2406: Uncharacteri 27.3 36 0.00078 24.4 1.2 23 83-105 33-55 (69)
28 PF04881 Adeno_GP19K: Adenovir 26.6 84 0.0018 25.4 3.3 35 133-167 19-54 (139)
29 PF11912 DUF3430: Protein of u 25.9 43 0.00093 27.0 1.6 34 60-94 45-79 (212)
30 PLN02305 lipoxygenase 25.6 1.6E+02 0.0035 30.6 5.8 51 110-160 155-208 (918)
31 PF10913 DUF2706: Protein of u 24.4 86 0.0019 21.7 2.6 22 1-22 1-22 (60)
32 PF03032 Brevenin: Brevenin/es 24.3 51 0.0011 21.8 1.5 19 1-20 3-21 (46)
33 PF15240 Pro-rich: Proline-ric 24.2 49 0.0011 27.8 1.7 19 5-24 2-20 (179)
34 PF06459 RR_TM4-6: Ryanodine R 23.9 57 0.0012 28.9 2.1 16 2-17 173-190 (274)
35 PF11131 PhrC_PhrF: Rap-phr ex 23.8 65 0.0014 20.5 1.8 22 2-23 1-22 (37)
36 TIGR02052 MerP mercuric transp 22.7 60 0.0013 21.2 1.6 20 1-20 1-20 (92)
37 smart00112 CA Cadherin repeats 21.7 1.7E+02 0.0036 19.4 3.7 31 58-88 45-77 (79)
38 PF01108 Tissue_fac: Tissue fa 21.3 1.1E+02 0.0023 22.3 2.9 38 21-65 19-58 (107)
39 KOG4714 Nucleoporin [Nuclear s 20.2 67 0.0015 29.1 1.8 25 105-129 290-317 (319)
40 PRK15216 putative fimbrial bio 20.1 3.4E+02 0.0074 25.0 6.2 128 1-141 1-138 (340)
No 1
>PF06232 ATS3: Embryo-specific protein 3, (ATS3); InterPro: IPR010417 This is a family of plant seed-specific proteins identified in Arabidopsis thaliana (Mouse-ear cress). ATS3 is expressed in a pattern similar to the Arabidopsis seed storage protein genes [].
Probab=100.00 E-value=2.2e-48 Score=303.60 Aligned_cols=115 Identities=70% Similarity=1.284 Sum_probs=112.7
Q ss_pred cCCCceEEEEEEcCCCCCCCCCceEEEEEeeCCCCeeeeeccCCCCC-CCCcCCCceeeEeecCCCCCeeEEEEEEcCCC
Q 030462 54 AAKSCSYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDDPYS-RTFESCSTDTFQISGPCTYDICYQYLLRSGSD 132 (177)
Q Consensus 54 ~~~~C~YtVtIkTG~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~p~~-~~FErgs~DtF~v~g~Clg~Ic~l~L~rdG~d 132 (177)
+.++|+|+|+|||||+++|||+|+|||+|+|++||+|++++||+|.+ ++||||++|+|+|+|+|+++||+|+|+|+|+|
T Consensus 10 ~~~~CsYtv~IkTsC~s~a~T~d~Isi~FgDa~Gn~v~~~~Ld~p~~~~~FErCs~DtF~v~G~C~~~IC~lyL~r~G~d 89 (125)
T PF06232_consen 10 QAGSCSYTVTIKTSCSSPAGTDDQISIAFGDAYGNQVYVPRLDDPGSGDTFERCSTDTFQVTGPCLYQICYLYLYRSGSD 89 (125)
T ss_pred cCCCCcEEEEEEeCcCCCcCCcceEEEEEecCCCCEEEEccCCCCCccCchhcCCcceeEeecccCCcccEEEEEEccCC
Confidence 57789999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred CceeeEEEEeccCCceEEEEeceecCCCCceeeecC
Q 030462 133 GWKPESVKICGQNIRTVTFFYNTFIPDGVWFGFNQC 168 (177)
Q Consensus 133 gW~~e~V~V~~~~~~~~~F~~n~WL~~~~~yg~n~C 168 (177)
||+||||+|++.+.++++|++|+|||+|+|||+|+|
T Consensus 90 GW~Pe~V~Iy~~~~~~~~F~~~~~lp~~vwyG~n~C 125 (125)
T PF06232_consen 90 GWKPEWVQIYGSGSKPVTFYFNTFLPNGVWYGFNYC 125 (125)
T ss_pred CCEeCeEEEEEcCCCCeEEECCCcCCCCCcccccCC
Confidence 999999999999899999999999999999999999
No 2
>cd01754 PLAT_plant_stress PLAT/LH2 domain of plant-specific single domain protein family with unknown function. Many of its members are stress induced. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=99.97 E-value=8.4e-30 Score=199.67 Aligned_cols=106 Identities=26% Similarity=0.438 Sum_probs=92.2
Q ss_pred ceEEEEEEcCCCCCCCCCceEEEEEeeCCCCeeeeeccC------CCCCCCCcCCCceeeEeecCC-CCCeeEEEEEEcC
Q 030462 58 CSYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLD------DPYSRTFESCSTDTFQISGPC-TYDICYQYLLRSG 130 (177)
Q Consensus 58 C~YtVtIkTG~~~~AGTda~IsI~l~da~Gn~v~~~~Ld------~p~~~~FErgs~DtF~v~g~C-lg~Ic~l~L~rdG 130 (177)
|.|+|+|+||++++|||||+|+|+|+|.+|++.....++ ++.++.||||++|+|.|..++ +|+||+|+||||+
T Consensus 1 ~~Y~I~V~TG~~~gAGTdanV~i~l~G~~G~s~~~~l~~~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~l~~irI~HDn 80 (129)
T cd01754 1 CVYTIYVQTGSIWKAGTDSRISLQIYDADGPGLRIANLEAWGGLMGAGHDYFERGNLDRFSGRGPCLPSPPCWMNLTSDG 80 (129)
T ss_pred CEEEEEEEECCCcccCCcceEEEEEEeCCCCcccEEcccccccccccccccccCCCccEEEEEeccCCCCeEEEEEEECC
Confidence 899999999999999999999999999999985544433 356889999999999998877 7999999999996
Q ss_pred CC---CceeeEEEEecc-C---CceEEEEeceecCCC-Cce
Q 030462 131 SD---GWKPESVKICGQ-N---IRTVTFFYNTFIPDG-VWF 163 (177)
Q Consensus 131 ~d---gW~~e~V~V~~~-~---~~~~~F~~n~WL~~~-~~y 163 (177)
++ +|||++|+|.+. . ...++|+|||||+.| .+|
T Consensus 81 ~G~~p~W~l~~V~V~d~~~~~~~~~~~F~c~rWLa~d~~~~ 121 (129)
T cd01754 81 TGNHPGWYVNYVEVTQAGQHAPCMQHLFAVEQWLATDESPY 121 (129)
T ss_pred CCCCCCcccCEEEEEeCCCCCcCcEEEEEecEeccCCCCcc
Confidence 53 999999999975 2 358999999999987 444
No 3
>cd00113 PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates.
Probab=99.95 E-value=4.6e-27 Score=176.01 Aligned_cols=109 Identities=40% Similarity=0.518 Sum_probs=96.7
Q ss_pred ceEEEEEEcCCCCCCCCCceEEEEEeeCCCCeeeeeccCCCCCCCCcCCCceeeEeecC-CCCCeeEEEEEEcCCC---C
Q 030462 58 CSYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTFQISGP-CTYDICYQYLLRSGSD---G 133 (177)
Q Consensus 58 C~YtVtIkTG~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~p~~~~FErgs~DtF~v~g~-Clg~Ic~l~L~rdG~d---g 133 (177)
|.|+|+|+||+..+|||+++|+|.|+|++|++.....++++.. ||||++|+|.+..+ ++|+|+.|+|+||+.+ +
T Consensus 1 ~~Y~v~V~Tg~~~~agT~~~v~i~l~g~~g~s~~~~l~~~~~~--f~~g~~~~f~v~~~~~lG~i~~v~l~~d~~g~~~~ 78 (116)
T cd00113 1 CRYTVTIKTGDKKGAGTDSNISLALYGENGNSSDIPILDGPGS--FERGSTDTFQIDLKLDIGDITKVYLRRDGSGLSDG 78 (116)
T ss_pred CEEEEEEEECCCCCCCccCEEEEEEEeCCCCcccEEccCCCCc--ccCCCceEEEEeccCCCcCeEEEEEEECCCCCCCC
Confidence 7899999999999999999999999999999966554444333 99999999999887 6999999999999775 9
Q ss_pred ceeeEEEEecc-CCceEEEEeceecCCCCceeeecC
Q 030462 134 WKPESVKICGQ-NIRTVTFFYNTFIPDGVWFGFNQC 168 (177)
Q Consensus 134 W~~e~V~V~~~-~~~~~~F~~n~WL~~~~~yg~n~C 168 (177)
|||++|+|++. +.+.+.|+|++||+.+.+|..++|
T Consensus 79 W~l~~V~V~~~~~~~~~~F~~~~Wl~~~~~~~~~r~ 114 (116)
T cd00113 79 WYCESITVQALGTKKVYTFPVNRWVLGGKWYTSVRS 114 (116)
T ss_pred EEEeEEEEEeCCCCCEEEEEeCCCcccCCCCCceee
Confidence 99999999976 568899999999999988887765
No 4
>cd01753 PLAT_LOX PLAT domain of 12/15-lipoxygenase. As a unique subfamily of the mammalian lipoxygenases, they catalyze enzymatic lipid peroxidation in complex biological structures via direct dioxygenation of phospholipids and cholesterol esters of biomembranes and plasma lipoproteins. Both types of enzymes are cytosolic but need this domain to access their sequestered membrane or micelle bound substrates.
Probab=99.95 E-value=5.4e-27 Score=178.86 Aligned_cols=101 Identities=22% Similarity=0.240 Sum_probs=91.9
Q ss_pred eEEEEEEcCCCCCCCCCceEEEEEeeCCCCeeeeeccCCCCCCCCcCCCceeeEeecC-CCCCeeEEEEEEcCC---CCc
Q 030462 59 SYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTFQISGP-CTYDICYQYLLRSGS---DGW 134 (177)
Q Consensus 59 ~YtVtIkTG~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~p~~~~FErgs~DtF~v~g~-Clg~Ic~l~L~rdG~---dgW 134 (177)
.|+|+|+||.+..|||+|+|+|.|.|++|++ ....|+++..+ ||||++|+|.+..+ ++|+|++|+||||++ ++|
T Consensus 2 ~Y~V~V~Tg~~~~AGT~a~V~i~l~G~~g~S-~~~~L~~~~~~-FerG~~d~F~v~~~~~lG~l~~i~i~~d~~g~~~~W 79 (113)
T cd01753 2 EYKVTVATGSSLFAGTDDYIYLTLVGTAGES-EKQLLDRPGYD-FERGAVDEYKVKVPEDLGELLLVRLRKRKYLLFDAW 79 (113)
T ss_pred EEEEEEEECCCcCCccccEEEEEEEECCCcc-cCEEcCCCCCc-cCCCCeeEEEEecccCCCCcEEEEEEECCCCCCCCe
Confidence 6999999999999999999999999999987 67788887654 99999999999865 599999999999964 399
Q ss_pred eeeEEEEeccCCceEEEEeceecCCCC
Q 030462 135 KPESVKICGQNIRTVTFFYNTFIPDGV 161 (177)
Q Consensus 135 ~~e~V~V~~~~~~~~~F~~n~WL~~~~ 161 (177)
||++|+|.++.++.+.|+|||||+.+.
T Consensus 80 ~l~~V~V~~~~~~~~~F~c~rWl~~~~ 106 (113)
T cd01753 80 FCNYITVTGPGGDEYHFPCYRWIEGYG 106 (113)
T ss_pred eecEEEEEcCCCCEEEEEhHHeECCCC
Confidence 999999998878889999999999874
No 5
>cd01756 PLAT_repeat PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=99.94 E-value=4.6e-26 Score=174.03 Aligned_cols=103 Identities=19% Similarity=0.220 Sum_probs=94.4
Q ss_pred eEEEEEEcCCCCCCCCCceEEEEEeeCCCCeeeeeccCCC-CCCCCcCCCceeeEeecCCCCCeeEEEEEEcCC---CCc
Q 030462 59 SYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDDP-YSRTFESCSTDTFQISGPCTYDICYQYLLRSGS---DGW 134 (177)
Q Consensus 59 ~YtVtIkTG~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~p-~~~~FErgs~DtF~v~g~Clg~Ic~l~L~rdG~---dgW 134 (177)
.|+|+|+||...+|||+++|+|.|+|..|++ ....|+++ ..+.||||++|+|.+....+|+|++|+||||+. ++|
T Consensus 2 ~Y~v~v~TG~~~~AGT~a~V~i~L~G~~g~s-~~~~L~~~~~~~~FerGs~d~F~i~~~~lG~l~~i~i~~d~~g~~~~W 80 (120)
T cd01756 2 TYEVTVKTGDVKGAGTDANVFITLYGENGDT-GKRKLKKSNNKNKFERGQTDKFTVEAVDLGKLKKIRIGHDNSGLGAGW 80 (120)
T ss_pred EEEEEEEECCCcCCCCCcEEEEEEEeCCCcc-ccEEccCCCcCCcccCCCeEEEEEEecCCCCeEEEEEEECCCCCCCCc
Confidence 6999999999999999999999999999987 77789887 788999999999999888899999999999965 499
Q ss_pred eeeEEEEecc-CCceEEEEeceecCCCCc
Q 030462 135 KPESVKICGQ-NIRTVTFFYNTFIPDGVW 162 (177)
Q Consensus 135 ~~e~V~V~~~-~~~~~~F~~n~WL~~~~~ 162 (177)
||++|+|.+. +++.+.|+||+||+.+..
T Consensus 81 ~~~~V~V~~~~~~~~~~F~~~~Wl~~~~~ 109 (120)
T cd01756 81 FLDKVEIREPGTGDEYTFPCNRWLDKDED 109 (120)
T ss_pred EEeEEEEEECCCceEEEEEeCCccCCCCC
Confidence 9999999976 578899999999998743
No 6
>cd01752 PLAT_polycystin PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological functions remain poorly defined. In human, mutations in polycystin-1 (PKD1) and polycystin-2 (PKD2) have been shown to be the cause for autosomal dominant polycystic kidney disease (ADPKD). The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=99.94 E-value=6.3e-26 Score=173.48 Aligned_cols=103 Identities=21% Similarity=0.252 Sum_probs=93.6
Q ss_pred ceEEEEEEcCCCCCCCCCceEEEEEeeCCCCeeeeeccCCCCCCCCcCCCceeeEeecC-CCCCeeEEEEEEcCC---CC
Q 030462 58 CSYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTFQISGP-CTYDICYQYLLRSGS---DG 133 (177)
Q Consensus 58 C~YtVtIkTG~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~p~~~~FErgs~DtF~v~g~-Clg~Ic~l~L~rdG~---dg 133 (177)
..|+|+|+||...+|||+++|+|.|+|.+|++ ....|.++.++.||||++|+|.+..+ .+|+|+.|+||||++ ++
T Consensus 1 ~~Y~v~v~Tg~~~gAGT~a~V~i~L~G~~g~s-~~~~L~~~~~~~F~rG~~~~f~i~~~~dlG~l~~i~l~hd~~g~~~~ 79 (120)
T cd01752 1 YLYLVTVFTGWRRGAGTTAKVTITLYGAEGES-EPHHLRDPEKPIFERGSVDSFLLTTPFPLGELQSIRLWHDNSGLSPS 79 (120)
T ss_pred CEEEEEEEECCCCCCCcccEEEEEEEeCCCCc-ccEEcCCCCccceeCCCeeEEEecCccCCCCccEEEEEECCCCCCCC
Confidence 36999999999999999999999999999987 66788888889999999999999865 599999999999965 39
Q ss_pred ceeeEEEEecc-CCceEEEEeceecCCCC
Q 030462 134 WKPESVKICGQ-NIRTVTFFYNTFIPDGV 161 (177)
Q Consensus 134 W~~e~V~V~~~-~~~~~~F~~n~WL~~~~ 161 (177)
|||++|+|.+. +++.+.|+|++||+.+.
T Consensus 80 W~l~~V~V~~~~t~~~~~F~~~rWl~~~~ 108 (120)
T cd01752 80 WYLSRVIVRDLQTGKKWFFLCNDWLSVEE 108 (120)
T ss_pred eEEEEEEEEECCCCcEEEEEeCcEECCcC
Confidence 99999999976 57889999999999763
No 7
>cd02899 PLAT_SR Scavenger receptor protein. A subfamily of PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates. This subfamily contains Toxoplasma gondii Scavenger protein TgSR1.
Probab=99.92 E-value=9.3e-25 Score=166.95 Aligned_cols=97 Identities=20% Similarity=0.225 Sum_probs=88.7
Q ss_pred eEEEEEEcCCCCCCCCCceEEEEEeeCCCCeeeeeccCCCCCCCCcCCCceeeEeecCCCCCeeEEEEEEcCC-CCceee
Q 030462 59 SYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTFQISGPCTYDICYQYLLRSGS-DGWKPE 137 (177)
Q Consensus 59 ~YtVtIkTG~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~p~~~~FErgs~DtF~v~g~Clg~Ic~l~L~rdG~-dgW~~e 137 (177)
.|+|+|+||...+|||+++|+|.|.|..|.+ ....|++ .||||++|+|.+++.+||+|..|+|.++|. ++|||+
T Consensus 2 ~Y~I~V~TG~~~~AGT~~~V~i~L~G~~g~S-~~~~L~~----~F~~G~~d~F~v~~~dLG~l~~i~l~n~g~~~~Wf~~ 76 (109)
T cd02899 2 TYTASVQTGKDKEAGTNGTIEITLLGSSGRS-NPKTLSQ----GFYPGSLKRIRFRAADVGDINAIILSNTALNDPWYCD 76 (109)
T ss_pred eEEEEEEECCCCCCCccceEEEEEEECCCCc-CCEEccC----ccCCCceEEEEECccccCceEEEEEECCCCCCCceee
Confidence 5999999999999999999999999999987 5566764 599999999999988899999999988886 499999
Q ss_pred EEEEeccCCceEEEEeceecCCC
Q 030462 138 SVKICGQNIRTVTFFYNTFIPDG 160 (177)
Q Consensus 138 ~V~V~~~~~~~~~F~~n~WL~~~ 160 (177)
+|+|.++.++.+.|+|||||+..
T Consensus 77 ~V~V~~~~g~~~~Fpc~rWla~~ 99 (109)
T cd02899 77 YVRIKSEDGKVFAFNVKRWIGYP 99 (109)
T ss_pred EEEEECCCCCEEEEEcceeeCCc
Confidence 99999987788999999999974
No 8
>smart00308 LH2 Lipoxygenase homology 2 (beta barrel) domain.
Probab=99.89 E-value=1.4e-22 Score=149.52 Aligned_cols=100 Identities=18% Similarity=0.160 Sum_probs=86.8
Q ss_pred eEEEEEEcCCCCCCCCCceEEEEEeeCCCCeeeeeccCCCCCCCCcCCCceeeEeecC-CCCCeeEEEEEEcC-CCCcee
Q 030462 59 SYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTFQISGP-CTYDICYQYLLRSG-SDGWKP 136 (177)
Q Consensus 59 ~YtVtIkTG~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~p~~~~FErgs~DtF~v~g~-Clg~Ic~l~L~rdG-~dgW~~ 136 (177)
.|+|+|+||.+..|||+++|+|.|.|..|++ ....+....+..||||++|+|.+..+ .+|+|..|+|+||+ .++|||
T Consensus 2 ~Y~v~V~Tg~~~~aGT~~~V~l~L~g~~~~s-~~~~~~~~~~~~f~~g~~~~f~v~~~~~lG~l~~v~v~~d~~~~~w~l 80 (105)
T smart00308 2 KYKVTVTTGGLDFAGTTASVSLSLVGAEGDG-KESKLDYLFKGIFARGSTYEFTFDVDEDFGELGAVKIKNEHRHPEWFL 80 (105)
T ss_pred EEEEEEEECCccCCCccceEEEEEEeCCCCC-cceeccccCCccccCCceEEEEEecccCCCCcEEEEEEeCCCCCCeEE
Confidence 6999999999999999999999999999763 33444443445699999999999876 49999999999998 679999
Q ss_pred eEEEEecc-CCceEEEEeceecCC
Q 030462 137 ESVKICGQ-NIRTVTFFYNTFIPD 159 (177)
Q Consensus 137 e~V~V~~~-~~~~~~F~~n~WL~~ 159 (177)
++|+|.+. +.+.+.|+||+||..
T Consensus 81 ~~V~V~~~~~~~~~~F~c~~Wl~~ 104 (105)
T smart00308 81 KSITVKDLPTGGKYHFPCNSWVYP 104 (105)
T ss_pred EEEEEEECCCCCEEEEEcCceeCC
Confidence 99999975 678999999999975
No 9
>cd01757 PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 interacting protein 1 (Rab6IP1)_like family. PLAT/LH2 domains consists of an eight stranded beta-barrel. In RabIP1 this domain may participate in lipid-mediated modulation of Rab6IP1's function via it's generally proposed function of mediating interaction with lipids or membrane bound proteins.
Probab=99.86 E-value=3.5e-21 Score=148.37 Aligned_cols=95 Identities=15% Similarity=0.122 Sum_probs=81.8
Q ss_pred eEEEEEEcCCC-CCCCCCceEEEEEeeCCCCeeeeeccCCCCCCCCcCCCceeeEeecCCCCCeeEEEEEEcCC---CCc
Q 030462 59 SYTVIIKTSCS-SKSYTRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTFQISGPCTYDICYQYLLRSGS---DGW 134 (177)
Q Consensus 59 ~YtVtIkTG~~-~~AGTda~IsI~l~da~Gn~v~~~~Ld~p~~~~FErgs~DtF~v~g~Clg~Ic~l~L~rdG~---dgW 134 (177)
.|.|+|+||.. ++|||+|+|+|.|+|..|++ ....|+++ .| .|.+....||++.+|+||||.+ ++|
T Consensus 2 ~Y~VtV~TG~~~~gAGT~anV~i~L~G~~g~s-~~~~L~~~---~f------~~~v~~~~LG~L~~irIwHDnsG~~~~W 71 (114)
T cd01757 2 PYHVVIVPSKKLGGSMFTANPWICVSGELGET-PPLQIPKN---SL------EMTFDCQNLGKLTTVQIGHDNSGLLAKW 71 (114)
T ss_pred eEEEEEEeCCCCCCCCCcceEEEEEEEcCCCc-CCEEecCC---ce------EEEEecCCcCCcEEEEEEECCCCCCCCe
Confidence 69999999999 59999999999999999976 77788643 33 4777678899999999999954 499
Q ss_pred eeeEEEEec-cCCceEEEEeceecCCCCce
Q 030462 135 KPESVKICG-QNIRTVTFFYNTFIPDGVWF 163 (177)
Q Consensus 135 ~~e~V~V~~-~~~~~~~F~~n~WL~~~~~y 163 (177)
||++|+|.+ .+++.+.|+|||||+.+..-
T Consensus 72 fl~~V~V~d~~t~~~~~FpC~rWLa~~~~D 101 (114)
T cd01757 72 LVEYVMVRNEITGHTYKFPCGRWLGEGVDD 101 (114)
T ss_pred eeeEEEEEeCCCCCEEEEecCceecCCCCc
Confidence 999999998 57888999999999987543
No 10
>PF01477 PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents a domain found in lipoxygenases and other enzymes. It is known as the PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology) domain, is found in a variety of membrane or lipid associated proteins. Structurally, this domain forms a beta-sandwich composed of two sheets of four strands each [, , ]. The most highly conserved regions coincide with the beta-strands, with most of the highly conserved residues being buried within the protein. An exception to this is a surface lysine or arginine that occurs on the surface of the fifth beta-strand of the eukaryotic domains. In pancreatic lipase, the lysine in this position forms a salt bridge with the procolipase protein. The conservation of a charged surface residue may indicate the location of a conserved ligand-binding site. It is thought that this domain may mediate membrane attachment via other protein binding partners.; GO: 0005515 protein binding; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 3O8Y_B 3V99_B 3V92_A 3V98_B 1HPL_A ....
Probab=99.84 E-value=5.6e-21 Score=140.82 Aligned_cols=101 Identities=28% Similarity=0.303 Sum_probs=85.9
Q ss_pred EEEEEEcCCCCCCCCCceEEEEEeeCCCCeeeeeccCCCCCCCCcCCCceeeEeec-CCCCCeeEEEEEEcCC---CCce
Q 030462 60 YTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTFQISG-PCTYDICYQYLLRSGS---DGWK 135 (177)
Q Consensus 60 YtVtIkTG~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~p~~~~FErgs~DtF~v~g-~Clg~Ic~l~L~rdG~---dgW~ 135 (177)
|+|+|+||....|||+++|+|.|+|.+|++... .|.++....+ |++|+|.+.. ..+|+|..|+|+|++. ++|+
T Consensus 1 Y~v~v~Tg~~~~aGT~~~V~i~l~G~~g~s~~~-~l~~~~~~~~--g~~d~F~i~~~~~lG~i~~i~i~~~~~~~~~~W~ 77 (113)
T PF01477_consen 1 YRVTVKTGDERGAGTDANVYITLYGSKGKSGEI-ELLDPSGFNF--GSTDTFTIETPEDLGEIQKIRIWHDGSGPSPSWY 77 (113)
T ss_dssp EEEEEEEESSTEEEESSEEEEEEEETTEEEEEE-EEEEEEETST--TEEEEEEEEESSCGCSEEEEEEEEESSSSSSEEE
T ss_pred CEEEEEECCCCCCCcCCeEEEEEEECCCCcceE-EEeeeeeccc--CceEEeeeeecccCCCCcEEEEEEccCCCccceE
Confidence 999999999999999999999999999998444 4444333333 9999999977 5699999999999954 4999
Q ss_pred eeEEEEecc-CCceEEEEeceecCCCCce
Q 030462 136 PESVKICGQ-NIRTVTFFYNTFIPDGVWF 163 (177)
Q Consensus 136 ~e~V~V~~~-~~~~~~F~~n~WL~~~~~y 163 (177)
|++|+|... .+..+.|+||+||..+..|
T Consensus 78 l~~V~V~~~~~~~~~~F~~~~Wl~~~~~~ 106 (113)
T PF01477_consen 78 LDSVVVTDGETGRTYTFPCNRWLDPDKDY 106 (113)
T ss_dssp EEEEEEEETTTSEEEEEEEEEEESTTEGC
T ss_pred EEEEEEEeCCCCcEEEEEcCCEECCCCCC
Confidence 999999974 7799999999999987533
No 11
>cd01755 PLAT_lipase PLAT/ LH2 domain present in connection with a lipase domain. This family contains two major subgroups, the lipoprotein lipase (LPL) and the pancreatic triglyceride lipase. LPL is a key enzyme in catabolism of plasma lipoprotein triglycerides (TGs). The central role of triglyceride lipases is in energy production. In general, PLAT/LH2 domain's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=99.51 E-value=2.1e-13 Score=104.92 Aligned_cols=90 Identities=11% Similarity=0.076 Sum_probs=77.4
Q ss_pred ceEEEEEEcCCCCCCCCCceEEEEEeeCCCCeeeeeccCCCCCCCCcCCCceeeEe-ecCCCCCeeEEEEEEcCC-----
Q 030462 58 CSYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTFQI-SGPCTYDICYQYLLRSGS----- 131 (177)
Q Consensus 58 C~YtVtIkTG~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~p~~~~FErgs~DtF~v-~g~Clg~Ic~l~L~rdG~----- 131 (177)
+.|.|+|.||....|||+++|+|+|+|..|++ ....|.++ .||+|++|+|.+ +..++|++.+|++|+|..
T Consensus 1 ~hY~vtV~~~~~~~agt~~~v~v~L~G~~g~s-~~~~l~~~---~~~~g~~~sfli~t~~~lG~l~~v~~~~dn~~~~~~ 76 (120)
T cd01755 1 WHYQVKVHLSGKKNLEVDGTFTVSLYGTKGET-EQLPIVLG---ELKPNKTYSFLIDTEVDIGDLLKVKFKWENNVINSN 76 (120)
T ss_pred CEEEEEEEEeCccccCcCccEEEEEEcCCCCc-ccEEEeCC---cccCCCEEEEEEEcCCCccceEEEEEEEcCCCcccc
Confidence 57999999999999999999999999999998 66667553 489999999999 678899999999999943
Q ss_pred -----CCceeeEEEEecc-CCceEEE
Q 030462 132 -----DGWKPESVKICGQ-NIRTVTF 151 (177)
Q Consensus 132 -----dgW~~e~V~V~~~-~~~~~~F 151 (177)
.+|++++|.|.+. +.+...|
T Consensus 77 ~~~~~p~~~~~~I~Vq~get~~~~~F 102 (120)
T cd01755 77 SGETLPKLGARKIRVKSGETQKKFTF 102 (120)
T ss_pred cccCCCcEEEEEEEEEECCCCCEEEE
Confidence 2899999999965 5555555
No 12
>cd01758 PLAT_LPL PLAT/ LH2 domain present in lipoprotein lipase (LPL). LPL is a key enzyme in catabolism of plasma lipoprotein triglycerides (TGs) and has therefeore has a profound influence on triglyceride and high-density lipoprotein (HDL) cholesterol levels in the blood. In general, PLAT/LH2 domain's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=99.21 E-value=1.9e-10 Score=91.17 Aligned_cols=75 Identities=17% Similarity=0.209 Sum_probs=64.5
Q ss_pred ceEEEEEEcCCCCCCC-CCceEEEEEeeCCCCeeeeeccCCCCCCCCcCCCceeeEe-ecCCCCCeeEEEE-EEcCC--C
Q 030462 58 CSYTVIIKTSCSSKSY-TRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTFQI-SGPCTYDICYQYL-LRSGS--D 132 (177)
Q Consensus 58 C~YtVtIkTG~~~~AG-Tda~IsI~l~da~Gn~v~~~~Ld~p~~~~FErgs~DtF~v-~g~Clg~Ic~l~L-~rdG~--d 132 (177)
+.|.|+|.|+....|| |+++|+|+|+|.+|++ ....|.++ +.+|+|++++|.+ +..++|++.+|++ |||.. .
T Consensus 1 yhYqVtV~~~~~~~~~~t~~~v~i~L~G~~g~S-~~~~l~~~--~~~~~G~t~sfLi~t~~dlG~L~~vk~~W~~n~~~~ 77 (137)
T cd01758 1 FHYQLKIHFFNQTNRIETDPTFTISLYGTLGES-ENLPLTLP--EGITGNKTNSFLITTEKDIGDLLMLKLKWEGSSLWS 77 (137)
T ss_pred CeEEEEEEEecccCCCcccceEEEEEEcCCCcc-cCEEEecC--cccCCCCeEEEEEECCCCcCCEEEEEEEEeCCCCCC
Confidence 5899999999999998 9999999999999998 66667554 3569999999999 6788999999999 98843 2
Q ss_pred -Cce
Q 030462 133 -GWK 135 (177)
Q Consensus 133 -gW~ 135 (177)
.|+
T Consensus 78 ~sW~ 81 (137)
T cd01758 78 NSWW 81 (137)
T ss_pred hhhh
Confidence 764
No 13
>cd01759 PLAT_PL PLAT/LH2 domain of pancreatic triglyceride lipase. Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of triglyceride lipases is in energy production. The proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=97.26 E-value=0.0047 Score=47.72 Aligned_cols=87 Identities=14% Similarity=0.099 Sum_probs=66.5
Q ss_pred eEEEEEEcCCCCCCCCCceEEEEEeeCCCCeeeeeccCCCCCCCCcCCCceeeEe-ecCCCCCeeEEEEEEcCCC-C--c
Q 030462 59 SYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTFQI-SGPCTYDICYQYLLRSGSD-G--W 134 (177)
Q Consensus 59 ~YtVtIkTG~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~p~~~~FErgs~DtF~v-~g~Clg~Ic~l~L~rdG~d-g--W 134 (177)
+|.|+|.-+.... ++..+.|+|+|..|++ .-..+. .+.||.|++-+|.+ +...+|++-.|.++.++.- + |
T Consensus 2 ~Yqv~V~~s~~~~--~~g~~~vsL~G~~g~s-~~~~i~---~g~l~pg~tys~li~~d~dvG~l~~Vkf~W~~~~~n~~~ 75 (113)
T cd01759 2 RYKVSVTLSGKKK--VTGTILVSLYGNKGNT-RQYEIF---KGTLKPGNTYSAFIDVDVDVGPLTKVKFIWNNNVINITL 75 (113)
T ss_pred eEEEEEEEecccc--cCceEEEEEEcCCCCc-cceEEE---eeeecCCCEEEEEEEccCCCCCEEEEEEEEeCCccCCCC
Confidence 6999998877654 8899999999999997 333342 34699999999999 6778999999999998751 2 2
Q ss_pred ---eeeEEEEecc-CCceEEE
Q 030462 135 ---KPESVKICGQ-NIRTVTF 151 (177)
Q Consensus 135 ---~~e~V~V~~~-~~~~~~F 151 (177)
+.++|.|... +.+.+.|
T Consensus 76 p~~~~~~I~Vq~Ge~~~~~~F 96 (113)
T cd01759 76 PKVGAEKITVQSGKDGKVFNF 96 (113)
T ss_pred CeEEEEEEEEEeCCCccEEEE
Confidence 2678888855 4444444
No 14
>KOG2080 consensus Uncharacterized conserved protein, contains DENN and RUN domains [Signal transduction mechanisms]
Probab=96.90 E-value=0.0014 Score=65.44 Aligned_cols=92 Identities=18% Similarity=0.156 Sum_probs=73.1
Q ss_pred CceEEEEEEcCCCCCCCCCceEEEEEeeCCCCeeeeeccCCCCCCCCcCCCceeeEeecCCCCCeeEEEEEEcCCC---C
Q 030462 57 SCSYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTFQISGPCTYDICYQYLLRSGSD---G 133 (177)
Q Consensus 57 ~C~YtVtIkTG~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~p~~~~FErgs~DtF~v~g~Clg~Ic~l~L~rdG~d---g 133 (177)
.-.|.|.|.|| ++.|+.++|-|..-|.-+.. ...-|. |+ +=-|...-.-||-+.-|+|=||.++ -
T Consensus 973 k~~Y~vvIv~~--~g~~~~~~iWi~vsGsl~eT-~~i~~~-~n--------~~~f~F~~kNLG~LtT~rIGHdnS~~~~k 1040 (1295)
T KOG2080|consen 973 KMDYQVVIVTG--SGRGAIPAIWVTVEGSLCST-PPIMLK-PN--------TPLFKFDHKNLGILSTLRIGHQQSEKPVQ 1040 (1295)
T ss_pred ccceEEEEEeC--CCCcccCceEEEEecccCCC-CceeeC-CC--------CceeEEeccccceeeeEEecccCCCcchH
Confidence 45799999999 88999999999999999775 333332 22 2234444445899999999999654 9
Q ss_pred ceeeEEEEecc-CCceEEEEeceecCCC
Q 030462 134 WKPESVKICGQ-NIRTVTFFYNTFIPDG 160 (177)
Q Consensus 134 W~~e~V~V~~~-~~~~~~F~~n~WL~~~ 160 (177)
|++|+|.|.+. ++.++.|||.+|+.++
T Consensus 1041 W~vEyV~vRNEiTG~TYKFPCGrw~G~g 1068 (1295)
T KOG2080|consen 1041 WFLEYVLVRNEITGQTYKFPCGRWFGNG 1068 (1295)
T ss_pred HHHHHhhhhceeccceeccccccccCCc
Confidence 99999999875 8889999999999986
No 15
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=96.06 E-value=0.062 Score=50.13 Aligned_cols=91 Identities=14% Similarity=0.153 Sum_probs=70.2
Q ss_pred CceEEEEEEcCCCCC-CCCCceEEEEEeeCCCCeeeeeccCCCCCCCCcCCCceeeEe-ecCCCCCeeEEEEEEcCCC--
Q 030462 57 SCSYTVIIKTSCSSK-SYTRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTFQI-SGPCTYDICYQYLLRSGSD-- 132 (177)
Q Consensus 57 ~C~YtVtIkTG~~~~-AGTda~IsI~l~da~Gn~v~~~~Ld~p~~~~FErgs~DtF~v-~g~Clg~Ic~l~L~rdG~d-- 132 (177)
...|.|+|..+.... .+++..+.|+|++..|++-. ..+. ...+|.|++-+|.| +...+|++..|.++.++..
T Consensus 308 ~~~y~v~v~~~~~~~~~~~~~~~~~~l~g~~~~~~~-~~~~---~~~~~~~~t~~~~i~~~~~~g~~~~v~~~w~~~~~~ 383 (442)
T TIGR03230 308 VFHYQVKVHFFGKTSLSHTDQPMKISLYGTHGEKEN-IPFT---LPEVSTNKTYSFLITTDVDIGELLMVKLKWEKDTYI 383 (442)
T ss_pred EEEEEEEEEEeccccccccCCcEEEEEEcCCCCccc-eEEe---eeeecCCCeEEEEEecccCCCceEEEEEEEeCCCcc
Confidence 456899999887654 47899999999999999722 2232 34699999999999 5777999999999999764
Q ss_pred Cce---------eeEEEEecc-CCceEEE
Q 030462 133 GWK---------PESVKICGQ-NIRTVTF 151 (177)
Q Consensus 133 gW~---------~e~V~V~~~-~~~~~~F 151 (177)
.|. .++|+|... +.+.+.|
T Consensus 384 ~~~~~~~~~~~~~~~i~v~~ge~~~~~~f 412 (442)
T TIGR03230 384 SWSDWWSSPGFHIRKLRIKSGETQSKVIF 412 (442)
T ss_pred cchhhhcCCceeEEEEEEEeCCCccEEEE
Confidence 776 678888855 4444444
No 16
>cd01751 PLAT_LH2 PLAT/ LH2 domain of plant lipoxygenase related proteins. Lipoxygenases are nonheme, nonsulfur iron dioxygenases that act on lipid substrates containing one or more (Z,Z)-1,4-pentadiene moieties. In plants, the immediate products are involved in defense mechanisms against pathogens and may be precursors of metabolic regulators. The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=79.21 E-value=16 Score=29.12 Aligned_cols=51 Identities=12% Similarity=0.110 Sum_probs=40.6
Q ss_pred eeEee---cCCCCCeeEEEEEEcCCCCceeeEEEEecc-CCceEEEEeceecCCC
Q 030462 110 TFQIS---GPCTYDICYQYLLRSGSDGWKPESVKICGQ-NIRTVTFFYNTFIPDG 160 (177)
Q Consensus 110 tF~v~---g~Clg~Ic~l~L~rdG~dgW~~e~V~V~~~-~~~~~~F~~n~WL~~~ 160 (177)
.|.+. .+-+|.+=.+.+.-.-..--|++.|++.+. +..+..|.||.|+...
T Consensus 71 ~y~~~F~v~~~fG~pGAi~V~N~h~~EffLksitLe~~p~~g~v~F~CNSWVyp~ 125 (137)
T cd01751 71 AYEAEFEVPASFGPPGAVLVKNEHHSEFFLKSITLEGFGGSGTITFVCNSWVYPK 125 (137)
T ss_pred EEEEEEEeecccCCccEEEEEECCCceEEEEEEEEeCCCCCccEEEEccccCccC
Confidence 67762 344888888888766667999999999865 4489999999999854
No 17
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=53.12 E-value=9.3 Score=28.65 Aligned_cols=19 Identities=32% Similarity=0.453 Sum_probs=10.0
Q ss_pred hhHHHH-HHHHHHHHhccCC
Q 030462 3 KLLLFL-LIFATATIFSHAG 21 (177)
Q Consensus 3 ~~~~~~-~~~~~~~~~~~~~ 21 (177)
|.++|| |+|++++++|++.
T Consensus 4 K~~llL~l~LA~lLlisSev 23 (95)
T PF07172_consen 4 KAFLLLGLLLAALLLISSEV 23 (95)
T ss_pred hHHHHHHHHHHHHHHHHhhh
Confidence 554444 6666555555543
No 18
>PLN02264 lipoxygenase
Probab=45.78 E-value=79 Score=32.70 Aligned_cols=51 Identities=14% Similarity=0.101 Sum_probs=40.7
Q ss_pred eeEee---cCCCCCeeEEEEEEcCCCCceeeEEEEeccCCceEEEEeceecCCC
Q 030462 110 TFQIS---GPCTYDICYQYLLRSGSDGWKPESVKICGQNIRTVTFFYNTFIPDG 160 (177)
Q Consensus 110 tF~v~---g~Clg~Ic~l~L~rdG~dgW~~e~V~V~~~~~~~~~F~~n~WL~~~ 160 (177)
.|.+. ...+|.+=.+.+.-.-...-|++.|++.+..+.++.|.||.|+-..
T Consensus 159 ~y~~~F~~~~~fG~pGAi~V~N~h~~EffL~~itle~~p~g~v~F~cnSWV~p~ 212 (919)
T PLN02264 159 HYTAEFTVDSAFGSPGAITVTNKHQKEFFLESITIEGFACGPVHFPCNSWVQSQ 212 (919)
T ss_pred EEEEEEEeccccCCcceEEEEeCCCceEEEEEEEeccCCCCcEEEecCCccccC
Confidence 67762 4558888888877666678999999998754489999999999864
No 19
>PLN02337 lipoxygenase
Probab=38.30 E-value=1.1e+02 Score=31.46 Aligned_cols=51 Identities=12% Similarity=0.087 Sum_probs=40.7
Q ss_pred eeEee---cCCCCCeeEEEEEEcCCCCceeeEEEEecc-CCceEEEEeceecCCC
Q 030462 110 TFQIS---GPCTYDICYQYLLRSGSDGWKPESVKICGQ-NIRTVTFFYNTFIPDG 160 (177)
Q Consensus 110 tF~v~---g~Clg~Ic~l~L~rdG~dgW~~e~V~V~~~-~~~~~~F~~n~WL~~~ 160 (177)
.|.+. .+.+|.+=.+.+.-.-..--|++.|++.+. +..++.|.||.|+-..
T Consensus 96 ~y~~~F~~~~~fG~pGAi~V~N~h~~EffL~sitle~~p~~g~v~f~cnSWV~~~ 150 (866)
T PLN02337 96 AFKVTFDWDEKIGVPGAFIIKNNHHSEFYLKTVTLEDVPGHGRVHFVCNSWIYPA 150 (866)
T ss_pred EEEEEEEecccCCCcceEEEEecCCceEEEEEEEEecCCCCCcEEEecCCccccC
Confidence 67762 456888888888766667999999999864 5478999999999864
No 20
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=36.06 E-value=80 Score=22.18 Aligned_cols=29 Identities=28% Similarity=0.427 Sum_probs=19.7
Q ss_pred hhhhhcchhhhhcc---CCCceEEEEEEcCCC
Q 030462 41 IAIQKIYPLQLQVA---AKSCSYTVIIKTSCS 69 (177)
Q Consensus 41 ~~~~~~~~~~~~~~---~~~C~YtVtIkTG~~ 69 (177)
.|++.|||.....- ...|.|+|.+.+...
T Consensus 3 eaL~sIy~~~~~~~~~~~~~~~~~i~l~~~~~ 34 (107)
T smart00591 3 EALESIYPEDFEVIDEDARIPEITIKLSPSSD 34 (107)
T ss_pred HHHHhhccceeEEecCCCCccEEEEEEecCCC
Confidence 37899999876432 234678888876654
No 21
>PF15621 PROL5-SMR: Proline-rich submaxillary gland androgen-regulated family
Probab=34.02 E-value=23 Score=27.71 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=17.1
Q ss_pred hhhHHHHHHHHH-HHHhccCCccc
Q 030462 2 VKLLLFLLIFAT-ATIFSHAGSSI 24 (177)
Q Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~ 24 (177)
||.|+|||-+.+ |.-|..+++.-
T Consensus 1 MK~L~li~GLw~Li~CF~~~E~~R 24 (113)
T PF15621_consen 1 MKSLYLIFGLWALIGCFTPGESQR 24 (113)
T ss_pred CcceehHHHHHHHHHHcccccccc
Confidence 899998876665 44588887665
No 22
>PRK02710 plastocyanin; Provisional
Probab=32.86 E-value=1.1e+02 Score=22.92 Aligned_cols=12 Identities=25% Similarity=0.049 Sum_probs=6.1
Q ss_pred ChhhHHHHHHHH
Q 030462 1 MVKLLLFLLIFA 12 (177)
Q Consensus 1 ~~~~~~~~~~~~ 12 (177)
|||.+.+++..+
T Consensus 1 ~~~~~~~~~~~~ 12 (119)
T PRK02710 1 MAKRLRSIAAAL 12 (119)
T ss_pred CchhHHHHHHHH
Confidence 777554443333
No 23
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.70 E-value=1.9e+02 Score=24.97 Aligned_cols=32 Identities=13% Similarity=0.261 Sum_probs=23.4
Q ss_pred CCCceEEEEEEcCCCCCCCCCceEEEEEeeCCCCeeee
Q 030462 55 AKSCSYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYI 92 (177)
Q Consensus 55 ~~~C~YtVtIkTG~~~~AGTda~IsI~l~da~Gn~v~~ 92 (177)
...+.|.--|.|| =.=.|...+.|++|+.++-
T Consensus 44 ~~~~~~~fqV~tG------G~fDVD~~I~aPdgkvI~~ 75 (209)
T KOG1693|consen 44 DDTTSFEFQVQTG------GHFDVDYDIEAPDGKVIYS 75 (209)
T ss_pred CceEEEEEEEEeC------CceeeEEEEECCCCCEEee
Confidence 3446777777777 3446999999999987554
No 24
>PRK15346 outer membrane secretin SsaC; Provisional
Probab=32.37 E-value=32 Score=32.40 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=15.3
Q ss_pred ChhhHHHHHHHHHHHH-hccCCcc
Q 030462 1 MVKLLLFLLIFATATI-FSHAGSS 23 (177)
Q Consensus 1 ~~~~~~~~~~~~~~~~-~~~~~~~ 23 (177)
|||.|.|+|+|++..+ +.+|+|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (499)
T PRK15346 1 MKKLLILIFLFLLNTAKFAASKSI 24 (499)
T ss_pred CchhHHHHHHHHHhhhhhhccCCC
Confidence 8999888877776544 4444443
No 25
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=29.24 E-value=32 Score=18.87 Aligned_cols=8 Identities=50% Similarity=0.945 Sum_probs=5.7
Q ss_pred ChhhHHHH
Q 030462 1 MVKLLLFL 8 (177)
Q Consensus 1 ~~~~~~~~ 8 (177)
|||.+..+
T Consensus 1 MMk~vIIl 8 (19)
T PF13956_consen 1 MMKLVIIL 8 (19)
T ss_pred CceehHHH
Confidence 89976544
No 26
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=28.76 E-value=1.1e+02 Score=25.32 Aligned_cols=60 Identities=22% Similarity=0.316 Sum_probs=36.3
Q ss_pred ccCCCceEEEEEEcCCCCCCCCCceEEEEEeeCCCC-----eeeeeccCC---CCCCCCcCCCceeeEeec-CC
Q 030462 53 VAAKSCSYTVIIKTSCSSKSYTRDKISLAFGDAYGN-----EVYIKRLDD---PYSRTFESCSTDTFQISG-PC 117 (177)
Q Consensus 53 ~~~~~C~YtVtIkTG~~~~AGTda~IsI~l~da~Gn-----~v~~~~Ld~---p~~~~FErgs~DtF~v~g-~C 117 (177)
.+-++|.= |-|.-..||++.|.|.|.-+... .+....|.. |+...--++.++....+| .|
T Consensus 40 V~i~~C~t-----~pC~lkKgt~~si~I~F~~~~~~~~lkt~v~g~~lg~v~vPfpl~~~dacv~~~l~~gv~C 108 (158)
T KOG4063|consen 40 VKIDGCPT-----TPCQLKKGTEASIQIDFAPSRDTTKLKTVVHGITLGSVPVPFPLPASDACVCGNLLHGVYC 108 (158)
T ss_pred EEecCCCC-----CceEEecCCeEEEEEEEeeccchhhhhheeeeeecccEeecCCCCCCcccccccccccccC
Confidence 46678864 48999999999999999765422 222223321 333333556666655543 45
No 27
>PF10295 DUF2406: Uncharacterised protein (DUF2406); InterPro: IPR018809 This entry represents a family of small proteins conserved in fungi. The function is not known.
Probab=27.33 E-value=36 Score=24.43 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=21.7
Q ss_pred eeCCCCeeeeeccCCCCCCCCcC
Q 030462 83 GDAYGNEVYIKRLDDPYSRTFES 105 (177)
Q Consensus 83 ~da~Gn~v~~~~Ld~p~~~~FEr 105 (177)
-|..|+.+..+.+-+|-+..|||
T Consensus 33 kD~fG~~I~~PD~SNPTR~R~ER 55 (69)
T PF10295_consen 33 KDIFGNPITDPDRSNPTRSRDER 55 (69)
T ss_pred cccCCCccCCCCCCCCCcccccC
Confidence 89999999999999999999998
No 28
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=26.59 E-value=84 Score=25.37 Aligned_cols=35 Identities=31% Similarity=0.582 Sum_probs=22.3
Q ss_pred CceeeEEEEeccCCceEEEEeceecCCC-Cceeeec
Q 030462 133 GWKPESVKICGQNIRTVTFFYNTFIPDG-VWFGFNQ 167 (177)
Q Consensus 133 gW~~e~V~V~~~~~~~~~F~~n~WL~~~-~~yg~n~ 167 (177)
||-|+.|.|+..++.--.=.+-.|=|.| .||....
T Consensus 19 ~~ec~~v~i~~kNKt~~~~~~~~WqPGd~~~ytVtV 54 (139)
T PF04881_consen 19 GWECESVNITHKNKTWNNTVYPTWQPGDPEWYTVTV 54 (139)
T ss_pred ccccceEEEEecccccCceeeeeccCCCCcceEEEE
Confidence 8888888887553322222256688877 7886554
No 29
>PF11912 DUF3430: Protein of unknown function (DUF3430); InterPro: IPR021837 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length.
Probab=25.88 E-value=43 Score=27.00 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=15.6
Q ss_pred EEEEEEcCCCCCC-CCCceEEEEEeeCCCCeeeeec
Q 030462 60 YTVIIKTSCSSKS-YTRDKISLAFGDAYGNEVYIKR 94 (177)
Q Consensus 60 YtVtIkTG~~~~A-GTda~IsI~l~da~Gn~v~~~~ 94 (177)
|.+.+.+ |.... +......+......|+.+....
T Consensus 45 ys~~~~~-Ci~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (212)
T PF11912_consen 45 YSIPVGT-CITFDNQNNYYFSVFSCSNNGNIIQYNY 79 (212)
T ss_pred EEeeCCe-eECCccccceEEEEEEECCCCeEEEEEe
Confidence 5555555 66554 3333333444444444444333
No 30
>PLN02305 lipoxygenase
Probab=25.59 E-value=1.6e+02 Score=30.57 Aligned_cols=51 Identities=12% Similarity=-0.020 Sum_probs=40.2
Q ss_pred eeEee---cCCCCCeeEEEEEEcCCCCceeeEEEEeccCCceEEEEeceecCCC
Q 030462 110 TFQIS---GPCTYDICYQYLLRSGSDGWKPESVKICGQNIRTVTFFYNTFIPDG 160 (177)
Q Consensus 110 tF~v~---g~Clg~Ic~l~L~rdG~dgW~~e~V~V~~~~~~~~~F~~n~WL~~~ 160 (177)
.|.+. ...+|.+=.+.+.-.-..--|++.|++.+..+.++.|.||.|+-..
T Consensus 155 ~~~~~f~~~~~fG~pGA~~v~N~h~~ef~l~~i~l~~~p~g~v~f~cnSWv~~~ 208 (918)
T PLN02305 155 EYAADFTVPFDFGKPGAVLVTNLHGKEFYLMEIVIHGFDDGPIFFPANTWIHSR 208 (918)
T ss_pred EEEEEEeeccccCCcceEEEEeCCCceEEEEEEEEecCCCCeEEEeccCccccC
Confidence 67762 3447888888777666679999999998754589999999999864
No 31
>PF10913 DUF2706: Protein of unknown function (DUF2706); InterPro: IPR024444 This family of proteins with unknown function appears to be restricted to Rickettsia spp.
Probab=24.36 E-value=86 Score=21.70 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=14.1
Q ss_pred ChhhHHHHHHHHHHHHhccCCc
Q 030462 1 MVKLLLFLLIFATATIFSHAGS 22 (177)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (177)
|.|++-|++.|..+.-+.+-+|
T Consensus 1 mlk~lkf~lv~imlaqllsctp 22 (60)
T PF10913_consen 1 MLKSLKFLLVLIMLAQLLSCTP 22 (60)
T ss_pred ChhHHHHHHHHHHHHHHHcCCC
Confidence 8898887777766544444433
No 32
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=24.32 E-value=51 Score=21.77 Aligned_cols=19 Identities=26% Similarity=0.399 Sum_probs=9.5
Q ss_pred ChhhHHHHHHHHHHHHhccC
Q 030462 1 MVKLLLFLLIFATATIFSHA 20 (177)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (177)
|-|+|+|+|.+- ++.+|-.
T Consensus 3 lKKsllLlfflG-~ISlSlC 21 (46)
T PF03032_consen 3 LKKSLLLLFFLG-TISLSLC 21 (46)
T ss_pred chHHHHHHHHHH-HcccchH
Confidence 445665555444 3345543
No 33
>PF15240 Pro-rich: Proline-rich
Probab=24.20 E-value=49 Score=27.79 Aligned_cols=19 Identities=42% Similarity=0.331 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhccCCccc
Q 030462 5 LLFLLIFATATIFSHAGSSI 24 (177)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~ 24 (177)
|++||+-| +++||+|...-
T Consensus 2 LlVLLSvA-LLALSSAQ~~d 20 (179)
T PF15240_consen 2 LLVLLSVA-LLALSSAQSTD 20 (179)
T ss_pred hhHHHHHH-HHHhhhccccc
Confidence 33444444 56888886554
No 34
>PF06459 RR_TM4-6: Ryanodine Receptor TM 4-6; InterPro: IPR009460 The release of Ca2+ ions from intracellular stores is a key step in a wide variety of cellular functions. In striated muscle, the release of Ca2+ from the sarcoplasmic reticulum (SR) leads to muscle contraction. Ca2+ release occurs through large, high-conductance Ca2+ release channels, also known as ryanodine receptors (RyRs) because they bind the plant alkaloid ryanodine with high affinity and specificity []. This region covers TM regions 4-6 of the ryanodine receptor 1 family.; GO: 0005219 ryanodine-sensitive calcium-release channel activity, 0006874 cellular calcium ion homeostasis, 0016021 integral to membrane
Probab=23.94 E-value=57 Score=28.87 Aligned_cols=16 Identities=31% Similarity=0.687 Sum_probs=12.6
Q ss_pred hhhHHHHHHHHH--HHHh
Q 030462 2 VKLLLFLLIFAT--ATIF 17 (177)
Q Consensus 2 ~~~~~~~~~~~~--~~~~ 17 (177)
||.|.|+++|+| |+.|
T Consensus 173 lr~lALflAFaINFILLF 190 (274)
T PF06459_consen 173 LRFLALFLAFAINFILLF 190 (274)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 678999999998 4444
No 35
>PF11131 PhrC_PhrF: Rap-phr extracellular signalling
Probab=23.78 E-value=65 Score=20.53 Aligned_cols=22 Identities=41% Similarity=0.688 Sum_probs=16.6
Q ss_pred hhhHHHHHHHHHHHHhccCCcc
Q 030462 2 VKLLLFLLIFATATIFSHAGSS 23 (177)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~ 23 (177)
.|+..|+.|++...+|..+.-.
T Consensus 1 LKsKl~l~CLA~aavF~~a~va 22 (37)
T PF11131_consen 1 LKSKLFLICLAAAAVFTAAGVA 22 (37)
T ss_pred CchhHHHHHHHHHHHHHhhccc
Confidence 3677788899988888877643
No 36
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=22.73 E-value=60 Score=21.16 Aligned_cols=20 Identities=30% Similarity=0.409 Sum_probs=10.2
Q ss_pred ChhhHHHHHHHHHHHHhccC
Q 030462 1 MVKLLLFLLIFATATIFSHA 20 (177)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (177)
|-|+++|+++|+.....+-|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (92)
T TIGR02052 1 MKKLATLLALFVLTSLPAWA 20 (92)
T ss_pred ChhHHHHHHHHHHhcchhhh
Confidence 55666666555533333333
No 37
>smart00112 CA Cadherin repeats. Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.
Probab=21.71 E-value=1.7e+02 Score=19.38 Aligned_cols=31 Identities=13% Similarity=0.202 Sum_probs=23.8
Q ss_pred ceEEEEEEcCCCCC--CCCCceEEEEEeeCCCC
Q 030462 58 CSYTVIIKTSCSSK--SYTRDKISLAFGDAYGN 88 (177)
Q Consensus 58 C~YtVtIkTG~~~~--AGTda~IsI~l~da~Gn 88 (177)
=.|.++|+-.+... ..+...|.|.+.|.+.+
T Consensus 45 ~~y~l~v~a~D~~~~~~~~~~~v~I~V~D~Nd~ 77 (79)
T smart00112 45 PEYTLTVEATDGGGPPLSSTATVTVTVLDVNDN 77 (79)
T ss_pred CeEEEEEEEEECCCCCcccEEEEEEEEEECCCC
Confidence 46777777766644 77889999999998865
No 38
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=21.34 E-value=1.1e+02 Score=22.28 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=21.5
Q ss_pred CccccCCcc--ccccCCccceehhhhhcchhhhhccCCCceEEEEEE
Q 030462 21 GSSIISPTE--IKSFEPKTVQFIAIQKIYPLQLQVAAKSCSYTVIIK 65 (177)
Q Consensus 21 ~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~YtVtIk 65 (177)
...+..|+- .+|.+.+++-. --| ......+..|+|..+
T Consensus 19 ~~~lp~P~nv~~~s~nf~~iL~-----W~~--~~~~~~~~~ytVq~~ 58 (107)
T PF01108_consen 19 SASLPAPQNVTVDSVNFKHILR-----WDP--GPGSPPNVTYTVQYK 58 (107)
T ss_dssp -SSGSSCEEEEEEEETTEEEEE-----EEE--STTSSSTEEEEEEEE
T ss_pred cccCCCCCeeEEEEECCceEEE-----eCC--CCCCCCCeEEEEEEE
Confidence 344466664 35777765532 111 112457889999999
No 39
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=20.20 E-value=67 Score=29.09 Aligned_cols=25 Identities=40% Similarity=0.656 Sum_probs=20.8
Q ss_pred CCCceeeEeecCCC---CCeeEEEEEEc
Q 030462 105 SCSTDTFQISGPCT---YDICYQYLLRS 129 (177)
Q Consensus 105 rgs~DtF~v~g~Cl---g~Ic~l~L~rd 129 (177)
+=|+++|.|.|+|| +++-.|||++.
T Consensus 290 ~~SinsfDV~g~~lVcgtd~eaIyl~~~ 317 (319)
T KOG4714|consen 290 SLSINSFDVLGPCLVCGTDAEAIYLTRH 317 (319)
T ss_pred ceeeeeeeccCceEEeccccceEEEecc
Confidence 45899999999995 58888888874
No 40
>PRK15216 putative fimbrial biosynthesis regulatory protein; Provisional
Probab=20.10 E-value=3.4e+02 Score=25.03 Aligned_cols=128 Identities=13% Similarity=0.163 Sum_probs=67.7
Q ss_pred ChhhHHHHHHHHHHHHhccCC--cccc-CCc-c-c-cccCCccceehhhhhcchhhhhccCCCce--EEEE-EEcCCC-C
Q 030462 1 MVKLLLFLLIFATATIFSHAG--SSII-SPT-E-I-KSFEPKTVQFIAIQKIYPLQLQVAAKSCS--YTVI-IKTSCS-S 70 (177)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~--~~~~-~p~-~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~C~--YtVt-IkTG~~-~ 70 (177)
|+|+++||+...+. -.+-|+ ..++ |-. . . .||.++.+|. .+|.-++ ++.+|+ ++|+ .+|++. -
T Consensus 1 ~~~~~l~~~m~~~~-~~~yaac~~~it~~~~~~i~~d~~~l~~~q~----~~~~~~f--~d~~c~~t~~vt~~~~sd~iv 73 (340)
T PRK15216 1 MKRLLFLLMMMQFT-QLGYAACNATLTNTKDYTIQSDSLMLGGEES----AIITNGF--TDANCSNSDVVTKLETSDHII 73 (340)
T ss_pred CcchHHHHHHHHHc-ccchhheeeEEeeccceEEecceEEecccee----eEeeccc--cccccccCceeeccCccceEE
Confidence 77876665554432 122222 2222 221 1 2 3699998886 2232222 456776 5554 245554 3
Q ss_pred CCCCCceEEEEEeeCCCCeeeeeccCCCCCCCCcCCCceeeEeecCCCCCeeEEEEEEcCCCCceeeEEEE
Q 030462 71 KSYTRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTFQISGPCTYDICYQYLLRSGSDGWKPESVKI 141 (177)
Q Consensus 71 ~AGTda~IsI~l~da~Gn~v~~~~Ld~p~~~~FErgs~DtF~v~g~Clg~Ic~l~L~rdG~dgW~~e~V~V 141 (177)
+.|=++.|-+.|.=+--+. ....|++. ..-||.+ |.|+-........+.+.-+|..+=-.+-|.+
T Consensus 74 g~~~~d~vklkl~~~w~~~-~~i~~~n~-~~~~~~~----y~vtvs~~~s~~~v~isa~~g~sv~i~~ia~ 138 (340)
T PRK15216 74 GMGPNDSVKLKLKVEWQSS-SAINMRNQ-NGVIEAP----YKITISEINSLEAVTVSARGGYSVTIDNITV 138 (340)
T ss_pred eeCCCCeEEEEEEEEEecC-CceEeecC-CCeeecc----eEEEEeeccCCceEEEecCCCceEEEcceEE
Confidence 4667777777665443222 22345442 3567765 6666666666667777777665444444444
Done!