BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030464
(177 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2
pdb|2AK2|A Chain A, Adenylate Kinase Isoenzyme-2
Length = 233
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNR 133
E +GV +G P A K A L+K V ++ ++R ++ S L K++ ++
Sbjct: 12 ESPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDA 71
Query: 134 GEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQATI 175
G++VS++++ L+ K LE + GF+LDG PR+ QA +
Sbjct: 72 GKLVSDEMVLELIEKNLETPPCKN--GFLLDGFPRTVRQAEM 111
>pdb|1AKE|A Chain A, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1AKE|B Chain B, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1ANK|A Chain A, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|1ANK|B Chain B, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|4AKE|A Chain A, Adenylate Kinase
pdb|4AKE|B Chain B, Adenylate Kinase
pdb|2ECK|A Chain A, Structure Of Phosphotransferase
pdb|2ECK|B Chain B, Structure Of Phosphotransferase
pdb|3HPQ|A Chain A, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
pdb|3HPQ|B Chain B, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
Length = 214
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 83 FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
+G+P A K A+ + + +P+IS ++R + S L KQ + ++ G++V+++++
Sbjct: 5 LLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELV 64
Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
L+ +R+ R GF+LDG PR+ QA
Sbjct: 65 IALVKERIAQEDCRN--GFLLDGFPRTIPQA 93
>pdb|3HPR|A Chain A, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
pdb|3HPR|B Chain B, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
Length = 214
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 83 FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
+G+P A K A+ + + +P+IS ++R + S L KQ + ++ G++V+++++
Sbjct: 5 LLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELV 64
Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
L+ +R+ R GF+LDG PR+ QA
Sbjct: 65 IALVKERIAQEDCRN--GFLLDGFPRTIPQA 93
>pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4V|B Chain B, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 83 FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
+G+P A K A+ + + +P+IS ++R + S L KQ + ++ G++V+++++
Sbjct: 5 LLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELV 64
Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
L+ +R+ R GF+LDG PR+ QA
Sbjct: 65 IALVKERIAQEDCRN--GFLLDGFPRTIPQA 93
>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2
Length = 242
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNR 133
E +G+ +G P A K A L++ V ++ ++R ++ S L K++ ++
Sbjct: 12 EYPKGIRAVLLGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDA 71
Query: 134 GEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQATI 175
G++VS++++ L+ K LE + GF+LDG PR+ QA +
Sbjct: 72 GKLVSDEMVVELIEKNLETPLCKN--GFLLDGFPRTVRQAEM 111
>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
pdb|2OSB|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
Length = 216
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
++ +G P A K E + + +P IS + R + + L + + +++GE+V
Sbjct: 1 MNLVLMGLPGAGKGTLGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQ 172
+++ G++ +RL G E GF+LDG PR+ Q
Sbjct: 61 DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQ 92
>pdb|3DL0|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse3
pdb|3DL0|B Chain B, Crystal Structure Of Adenylate Kinase Variant Aklse3
Length = 216
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
++ +G P A K E + + +P IS + R + + L + + +++GE+V
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQ 172
+++ G++ +RL G E GF+LDG PR+ Q
Sbjct: 61 DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQ 92
>pdb|2QAJ|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
pdb|2QAJ|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
Length = 217
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
++ +G P A K E + + +P IS + R + + L + + +++GE+V
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQ 172
+++ G++ +RL G E GF+LDG PR+ Q
Sbjct: 61 DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQ 92
>pdb|2EU8|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
pdb|2EU8|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
Length = 216
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
++ +G P A K E + + +P IS + R + + L + + +++GE+V
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQ 172
+++ G++ +RL G E GF+LDG PR+ Q
Sbjct: 61 DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQ 92
>pdb|1P3J|A Chain A, Adenylate Kinase From Bacillus Subtilis
Length = 217
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
++ +G P A K E + + +P IS + R + + L + + +++GE+V
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQ 172
+++ G++ +RL G E GF+LDG PR+ Q
Sbjct: 61 DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQ 92
>pdb|2P3S|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (G214rQ199R)
Length = 217
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
++ +G P A K E + + +P IS + R + + L + + +++GE+V
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQ 172
+++ G++ +RL G E GF+LDG PR+ Q
Sbjct: 61 DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQ 92
>pdb|2ORI|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
pdb|2ORI|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
Length = 216
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
++ +G P A K E + + +P IS + R + + L + + +++GE+V
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQ 172
+++ G++ +RL G E GF+LDG PR+ Q
Sbjct: 61 DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQ 92
>pdb|2OO7|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
pdb|2OO7|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
Length = 217
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
++ +G P A K E + + +P IS + R + + L + + +++GE+V
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQ 172
+++ G++ +RL G E GF+LDG PR+ Q
Sbjct: 61 DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQ 92
>pdb|1ZIN|A Chain A, Adenylate Kinase With Bound Ap5a
pdb|1ZIO|A Chain A, Phosphotransferase
pdb|1ZIP|A Chain A, Bacillus Stearothermophilus Adenylate Kinase
Length = 217
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
++ +G P A K AE + +P IS + R + + L Q ++RG++V
Sbjct: 1 MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVP 60
Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
+++ G++ +RL + GF+LDG PR+ QA
Sbjct: 61 DEVTIGIVRERLSKDDCQN--GFLLDGFPRTVAQA 93
>pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4Y|B Chain B, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 83 FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
+G+ A K A+ + + +P+IS ++R + S L KQ + ++ G++V+++++
Sbjct: 5 LLGALVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELV 64
Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
L+ +R+ R GF+LDG PR+ QA
Sbjct: 65 IALVKERIAQEDCRN--GFLLDGFPRTIPQA 93
>pdb|3DKV|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse1
Length = 217
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
++ +G P A K AE + + +P IS + R + + L + + +++GE+V
Sbjct: 1 MNIVLMGLPGAGKGTQAERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQ 172
+++ G++ +RL E GF+LDG PR+ Q
Sbjct: 61 DEVTIGIVRERLSKSDC--ERGFLLDGFPRTVAQ 92
>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From Marinibacillus
Marinus
Length = 216
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
++ +G P A K AE + + E+P IS + R + + L + + +++G +V
Sbjct: 1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVP 60
Query: 139 EDIIFGLLSKRL-EDGYYRGEIGFILDGLPRSRIQA 173
+++ G++ +RL +D + GF+LDG PR+ QA
Sbjct: 61 DEVTIGIVHERLSKDDCQK---GFLLDGFPRTVAQA 93
>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|B Chain B, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|C Chain C, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|D Chain D, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
Length = 243
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSED 140
+ F+G+P + K + L K +S ++R+ ++ L +I N +N G++V +
Sbjct: 32 YIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQ 91
Query: 141 IIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
++ L+ ++L+ + GFILDG PR+ QA
Sbjct: 92 MVLSLVDEKLKTPQCKK--GFILDGYPRNVKQA 122
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
Kinase Complexed With Two Molecules Of Adp And Mg
Length = 201
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 77 RGVHW--AFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRG 134
RG H +G P A K A L++ L +P+IS + R+++ + L + ++ G
Sbjct: 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAG 76
Query: 135 EVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
++V D+ L+ RL + GFILDG PRS QA
Sbjct: 77 DLVPSDLTNELVDDRLNN--PDAANGFILDGYPRSVEQA 113
>pdb|3GMT|A Chain A, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
pdb|3GMT|B Chain B, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
Length = 230
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 83 FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
+G+P A K A + + +P+IS +R + + L + + G++V + +I
Sbjct: 13 LLGAPGAGKGTQANFIKEKFGIPQISTGDXLRAAVKAGTPLGVEAKTYXDEGKLVPDSLI 72
Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
GL+ +RL++ G++ DG PR+ QA
Sbjct: 73 IGLVKERLKEADCAN--GYLFDGFPRTIAQA 101
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate
Kinase
Length = 181
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 83 FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
+G P A K A L++ L +P+IS + R+++ + L + ++ G++V D+
Sbjct: 5 LLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLT 64
Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
L+ RL + GFILDG PRS QA
Sbjct: 65 NELVDDRLNNPDAAN--GFILDGYPRSVEQA 93
>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate
Kinase Cgd5_3360
Length = 217
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 83 FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
IG+P + K E + K + +S ++R+ + + + + + + G V ++I+
Sbjct: 10 LIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIV 69
Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
GL+ ++ + G GF+LDG PR+ QA
Sbjct: 70 LGLVKEKFDLGVCVN--GFVLDGFPRTIPQA 98
>pdb|3AKY|A Chain A, Stability, Activity And Structure Of Adenylate Kinase
Mutants
Length = 220
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
+ IG P A K A L + ++ ++R ++ + L + +++G +VS
Sbjct: 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVS 64
Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
+DI+ ++ L + + GFILDG PR+ QA
Sbjct: 65 DDIMVNMIKDELTNNPA-CKNGFILDGFPRTIPQA 98
>pdb|1AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
pdb|2AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
Length = 220
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
+ IG P A K A L + ++ ++R ++ + L + +++G +VS
Sbjct: 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVS 64
Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
+DI+ ++ L + + GFILDG PR+ QA
Sbjct: 65 DDIMVNMIKDELTNNPA-CKNGFILDGFPRTIPQA 98
>pdb|2XB4|A Chain A, Crystal Structures Of Zinc Containing Adenylate Kinase
From Desulfovibrio Gigas
Length = 223
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 85 GSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFG 144
G + K ++ + I I R+ + + L K+ ++RG++V +DI
Sbjct: 7 GPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIP 66
Query: 145 LLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
++ + LE +G+ G++LDG PR+ +QA
Sbjct: 67 MVLETLES---KGKDGWLLDGFPRNTVQA 92
>pdb|3L0P|A Chain A, Crystal Structures Of Iron Containing Adenylate Kinase
From Desulfovibrio Gigas
pdb|3L0S|A Chain A, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
pdb|3L0S|C Chain C, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
Length = 223
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 85 GSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFG 144
G + K ++ + I I R+ + + L K+ ++RG++V +DI
Sbjct: 7 GPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIP 66
Query: 145 LLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
++ + LE +G+ G++LDG PR+ +QA
Sbjct: 67 MVLETLES---KGKDGWLLDGFPRNTVQA 92
>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
pdb|1ZAK|B Chain B, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
Length = 222
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 85 GSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFG 144
G+P + K E++ ++ IS ++R +++ S K+ + +G++V ++I+
Sbjct: 12 GAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVN 71
Query: 145 LLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
++ +RL + E G++LDG PRS QA
Sbjct: 72 MVKERLRQPDAQ-ENGWLLDGYPRSYSQA 99
>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus
Thermophilus Hb8
Length = 186
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVV 137
G F+G P A K A L++ L ++S I+R ++ + L +++ + RG++V
Sbjct: 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLV 63
Query: 138 SEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
+D+I L+ + L + I DG PR+ QA
Sbjct: 64 PDDLILELIREELAE-------RVIFDGFPRTLAQA 92
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSED 140
F+G P A K A+ L+K IS I+R+ + + L K+ + RGE+V +D
Sbjct: 3 LVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDD 62
Query: 141 IIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
+I L+ + + I DG PR+ QA
Sbjct: 63 LIIALIEE-----VFPKHGNVIFDGFPRTVKQA 90
>pdb|1UKY|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
pdb|1UKZ|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
Length = 203
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 84 IGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQ-IANAVNRGEVVSEDII 142
+G P A K E L K +S ++R + S + + I N + G++V ++I
Sbjct: 21 LGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEIT 80
Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
LL + D + F++DG PR QA
Sbjct: 81 LALLRNAISDNVKANKHKFLIDGFPRKMDQA 111
>pdb|1S3G|A Chain A, Crystal Structure Of Adenylate Kinase From Bacillus
Globisporus
Length = 217
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
++ +G P A K A+ + + P IS + R + + L + + +++G +V
Sbjct: 1 MNIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVP 60
Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
+++ G++ +RL + GF+LDG PR+ QA
Sbjct: 61 DEVTIGIVRERLSKSDC--DNGFLLDGFPRTVPQA 93
>pdb|1WDK|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDK|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDL|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDL|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDM|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|1WDM|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|2D3T|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
pdb|2D3T|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
Length = 390
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 131 VNRGEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQATIS 176
V+ GEV ED+I+G +++ LE G+ + ++ +P + T+S
Sbjct: 48 VDPGEV--EDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVS 91
>pdb|1QF9|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog In UmpCMP
Kinase
pdb|5UKD|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog
pdb|1UKE|A Chain A, UmpCMP KINASE FROM SLIME MOLD
pdb|2UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP
pdb|3UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP, AND
Alf3
pdb|4UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, UDP,
Beryllium Fluoride
Length = 194
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 84 IGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIF 143
+G P + K + + +S ++RQ+ S + IA + GE+V +
Sbjct: 12 LGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTV 71
Query: 144 GLLSKRLEDGYYRGEIGFILDGLPR 168
LL ++ + F++DG PR
Sbjct: 72 KLLKNAIDANQGK---NFLVDGFPR 93
>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
Length = 246
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSS 122
E RRG HW G PR AE L K+ EV + +I + L R S
Sbjct: 100 ENRRGQHWLLDGFPRTLGQ--AEALDKICEVDLVISLNIPFETLKDRLS 146
>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p)
pdb|3NDP|B Chain B, Crystal Structure Of Human Ak4(L171p)
Length = 231
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSS 122
E RRG HW G PR AE L K+ EV + +I + L R S
Sbjct: 78 ENRRGQHWLLDGFPRTLGQ--AEALDKICEVDLVISLNIPFETLKDRLS 124
>pdb|1ZKO|A Chain A, Crystal Structure Of Glycine Cleavage System H Protein
(Tm0212) From Thermotoga Maritima At 1.65 A Resolution
pdb|1ZKO|B Chain B, Crystal Structure Of Glycine Cleavage System H Protein
(Tm0212) From Thermotoga Maritima At 1.65 A Resolution
Length = 136
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 65 VTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEV 104
V LP+ GRE ++G A I S +A VYA + K++EV
Sbjct: 50 VDLPEV-GREVKKGEVVASIESVKAAADVYAPLSGKIVEV 88
>pdb|3L9F|A Chain A, The Crystal Structure Of Smu.1604c From Streptococcus
Mutans Ua159
pdb|3L9F|B Chain B, The Crystal Structure Of Smu.1604c From Streptococcus
Mutans Ua159
pdb|3L9F|C Chain C, The Crystal Structure Of Smu.1604c From Streptococcus
Mutans Ua159
pdb|3L9F|D Chain D, The Crystal Structure Of Smu.1604c From Streptococcus
Mutans Ua159
Length = 204
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 117 LSPRSSLHKQIANA--VNRGEVVSEDIIFGLLSKRLEDGYYRGEIGFIL 163
L PR S + + RG + +DII G+LSK+ GY EI IL
Sbjct: 14 LVPRGSHMASMTGGQQMGRGSMQGKDIILGILSKKERSGY---EINDIL 59
>pdb|2KA7|A Chain A, Nmr Solution Structure Of Tm0212 At 40 C
Length = 124
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 65 VTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEV 104
V LP+ GRE ++G A I S +A VYA + K++EV
Sbjct: 38 VDLPEV-GREVKKGEVVASIESVKAAADVYAPLSGKIVEV 76
>pdb|2BVZ|A Chain A, Mutant Of The Ribosomal Protein S6
Length = 101
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 41 DPDNYYSYYQAESDSDQHRDSLRSVTLPDT 70
DP Y+ +YQ E D+ D+ R + + D
Sbjct: 55 DPQGYFLWYQVEMPEDRVNDAARELRIRDN 84
>pdb|2BXJ|A Chain A, Double Mutant Of The Ribosomal Protein S6
pdb|2BXJ|B Chain B, Double Mutant Of The Ribosomal Protein S6
Length = 101
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 41 DPDNYYSYYQAESDSDQHRDSLRSVTLPDT 70
DP Y+ +YQ E D+ D+ R + + D
Sbjct: 55 DPQGYFLWYQVEMPEDRVNDAARELRIRDN 84
>pdb|3PX3|A Chain A, Structure Of Tylm1 From Streptomyces Fradiae H123a Mutant
In Complex With Sah And Dtdp-Quip3n
pdb|3PX3|D Chain D, Structure Of Tylm1 From Streptomyces Fradiae H123a Mutant
In Complex With Sah And Dtdp-Quip3n
Length = 263
Score = 26.2 bits (56), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 24/61 (39%)
Query: 32 SVAAAEPLFDPDNYYSYYQAESDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRAKK 91
V EP + P+N+ Y A + ++ V+ EG R VH+ G R
Sbjct: 145 GVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGIT 204
Query: 92 H 92
H
Sbjct: 205 H 205
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,821,895
Number of Sequences: 62578
Number of extensions: 178132
Number of successful extensions: 551
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 493
Number of HSP's gapped (non-prelim): 52
length of query: 177
length of database: 14,973,337
effective HSP length: 92
effective length of query: 85
effective length of database: 9,216,161
effective search space: 783373685
effective search space used: 783373685
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)