Query 030464
Match_columns 177
No_of_seqs 138 out of 1505
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 14:07:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030464.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030464hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02674 adenylate kinase 99.9 9E-27 1.9E-31 196.0 10.9 98 77-176 30-127 (244)
2 PF00406 ADK: Adenylate kinase 99.9 8.4E-27 1.8E-31 180.4 8.9 92 83-176 1-92 (151)
3 PLN02459 probable adenylate ki 99.9 1.7E-26 3.7E-31 195.9 11.3 100 77-176 28-127 (261)
4 PRK14529 adenylate kinase; Pro 99.9 1E-25 2.3E-30 187.3 10.7 95 79-176 1-95 (223)
5 KOG3079 Uridylate kinase/adeny 99.9 4.8E-25 1E-29 178.2 10.7 100 74-175 4-104 (195)
6 PTZ00088 adenylate kinase 1; P 99.9 6E-25 1.3E-29 183.2 11.7 99 76-176 4-104 (229)
7 COG0563 Adk Adenylate kinase a 99.9 1.1E-24 2.3E-29 175.5 10.7 96 79-176 1-96 (178)
8 PRK13808 adenylate kinase; Pro 99.9 1.3E-24 2.8E-29 189.9 10.8 96 79-176 1-96 (333)
9 TIGR01351 adk adenylate kinase 99.9 2.6E-24 5.7E-29 175.2 10.7 96 80-176 1-96 (210)
10 PRK14526 adenylate kinase; Pro 99.9 4.6E-24 9.9E-29 175.8 11.1 96 79-176 1-96 (211)
11 PRK14532 adenylate kinase; Pro 99.9 5.1E-24 1.1E-28 169.8 10.7 96 79-176 1-96 (188)
12 PRK14531 adenylate kinase; Pro 99.9 6.7E-24 1.4E-28 169.7 11.2 96 78-176 2-97 (183)
13 PRK00279 adk adenylate kinase; 99.9 1.7E-23 3.6E-28 171.0 10.8 96 79-176 1-96 (215)
14 PRK14528 adenylate kinase; Pro 99.9 3E-23 6.6E-28 166.9 11.4 96 79-176 2-97 (186)
15 PRK02496 adk adenylate kinase; 99.9 4.3E-23 9.3E-28 164.2 10.8 97 78-176 1-97 (184)
16 TIGR01359 UMP_CMP_kin_fam UMP- 99.9 9.4E-23 2E-27 161.2 10.6 94 80-176 1-94 (183)
17 PLN02200 adenylate kinase fami 99.9 1.7E-22 3.7E-27 168.6 11.6 106 68-176 31-138 (234)
18 cd01428 ADK Adenylate kinase ( 99.9 1.2E-21 2.5E-26 155.5 10.6 95 80-176 1-95 (194)
19 PRK14527 adenylate kinase; Pro 99.9 1.7E-21 3.7E-26 156.3 10.8 97 77-176 5-101 (191)
20 KOG3078 Adenylate kinase [Nucl 99.8 2.1E-21 4.5E-26 162.3 7.6 98 77-176 14-111 (235)
21 PRK14530 adenylate kinase; Pro 99.8 1.2E-20 2.5E-25 154.2 11.0 94 77-176 2-100 (215)
22 PLN02842 nucleotide kinase 99.8 3.3E-20 7.1E-25 169.6 10.2 94 82-176 1-94 (505)
23 TIGR01360 aden_kin_iso1 adenyl 99.8 2.4E-19 5.1E-24 141.4 11.0 98 78-176 3-100 (188)
24 PRK08356 hypothetical protein; 99.5 2E-13 4.4E-18 110.0 7.9 92 78-176 5-111 (195)
25 PRK01184 hypothetical protein; 99.4 2E-12 4.3E-17 102.6 9.2 90 78-175 1-96 (184)
26 PRK08118 topology modulation p 99.4 2.2E-12 4.7E-17 102.4 7.6 70 79-170 2-72 (167)
27 PRK06217 hypothetical protein; 99.2 1.5E-11 3.3E-16 98.1 7.0 76 78-170 1-76 (183)
28 PRK03839 putative kinase; Prov 99.2 2.6E-11 5.7E-16 96.0 7.2 38 79-116 1-38 (180)
29 PF13207 AAA_17: AAA domain; P 99.1 6.9E-11 1.5E-15 87.1 5.6 35 80-114 1-35 (121)
30 PRK07261 topology modulation p 99.1 3.9E-10 8.6E-15 89.6 6.9 71 79-171 1-71 (171)
31 PRK13949 shikimate kinase; Pro 99.0 1.2E-09 2.7E-14 86.8 9.3 86 79-175 2-90 (169)
32 PHA02530 pseT polynucleotide k 99.0 4.8E-10 1E-14 95.1 7.2 91 78-176 2-93 (300)
33 COG1102 Cmk Cytidylate kinase 98.9 3.7E-09 8.1E-14 84.7 7.4 40 79-118 1-40 (179)
34 KOG3347 Predicted nucleotide k 98.9 1.1E-09 2.5E-14 86.8 4.1 41 76-116 5-45 (176)
35 PRK12339 2-phosphoglycerate ki 98.9 1.4E-09 3.1E-14 88.8 4.5 43 77-119 2-44 (197)
36 PRK04182 cytidylate kinase; Pr 98.9 4.8E-09 1E-13 81.8 7.1 39 79-117 1-39 (180)
37 TIGR02173 cyt_kin_arch cytidyl 98.9 1E-08 2.2E-13 79.4 7.7 39 79-117 1-39 (171)
38 PRK14730 coaE dephospho-CoA ki 98.8 4.8E-09 1E-13 85.3 5.7 53 79-131 2-54 (195)
39 PRK08233 hypothetical protein; 98.8 1.2E-08 2.5E-13 79.9 7.1 88 77-170 2-89 (182)
40 PRK13947 shikimate kinase; Pro 98.8 1.4E-08 3E-13 79.2 7.5 38 79-116 2-39 (171)
41 PRK04040 adenylate kinase; Pro 98.8 1.1E-08 2.4E-13 82.8 7.1 40 78-117 2-43 (188)
42 PRK00131 aroK shikimate kinase 98.8 2.4E-08 5.1E-13 77.2 8.1 42 76-117 2-43 (175)
43 cd02020 CMPK Cytidine monophos 98.8 4.8E-09 1E-13 79.1 3.8 33 80-112 1-33 (147)
44 PRK00625 shikimate kinase; Pro 98.8 7.9E-09 1.7E-13 82.8 4.4 39 79-117 1-39 (173)
45 PF13671 AAA_33: AAA domain; P 98.7 2.8E-08 6E-13 74.9 6.4 38 80-117 1-38 (143)
46 COG0703 AroK Shikimate kinase 98.7 2.2E-08 4.8E-13 80.6 5.6 41 78-118 2-42 (172)
47 cd02022 DPCK Dephospho-coenzym 98.7 1.9E-08 4.1E-13 80.2 4.9 51 80-131 1-51 (179)
48 PRK00081 coaE dephospho-CoA ki 98.7 2.4E-08 5.3E-13 80.7 4.6 53 78-131 2-54 (194)
49 cd00464 SK Shikimate kinase (S 98.7 8.7E-08 1.9E-12 73.0 7.2 39 80-118 1-39 (154)
50 PRK13946 shikimate kinase; Pro 98.6 1.8E-07 3.8E-12 74.9 8.9 42 76-117 8-49 (184)
51 COG0237 CoaE Dephospho-CoA kin 98.6 1.2E-07 2.6E-12 78.0 7.2 51 78-129 2-52 (201)
52 COG0283 Cmk Cytidylate kinase 98.6 2.8E-07 6.2E-12 76.7 8.4 79 79-169 5-84 (222)
53 PRK13973 thymidylate kinase; P 98.6 3.2E-07 6.9E-12 75.1 8.4 75 77-153 2-89 (213)
54 PRK14734 coaE dephospho-CoA ki 98.6 1.2E-07 2.5E-12 77.4 5.6 54 79-133 2-55 (200)
55 TIGR00152 dephospho-CoA kinase 98.5 1.3E-07 2.9E-12 75.5 5.5 51 80-130 1-51 (188)
56 PRK13948 shikimate kinase; Pro 98.5 4.3E-07 9.4E-12 73.4 8.5 42 76-117 8-49 (182)
57 cd02021 GntK Gluconate kinase 98.5 6.5E-07 1.4E-11 68.4 8.0 34 81-114 2-35 (150)
58 PRK13974 thymidylate kinase; P 98.5 4.1E-07 8.8E-12 74.5 7.1 70 77-146 2-75 (212)
59 TIGR00017 cmk cytidylate kinas 98.5 5.9E-07 1.3E-11 74.4 7.8 53 78-140 2-54 (217)
60 PRK06762 hypothetical protein; 98.5 6.5E-07 1.4E-11 69.7 7.6 38 78-116 2-41 (166)
61 smart00072 GuKc Guanylate kina 98.5 1.5E-07 3.3E-12 75.1 3.9 92 79-175 3-110 (184)
62 PRK14021 bifunctional shikimat 98.4 3.1E-07 6.7E-12 85.3 6.2 44 74-117 2-45 (542)
63 PLN02199 shikimate kinase 98.4 6.1E-07 1.3E-11 78.0 7.5 69 77-149 101-169 (303)
64 PRK00023 cmk cytidylate kinase 98.4 6.8E-07 1.5E-11 74.2 7.1 39 77-115 3-41 (225)
65 PRK06547 hypothetical protein; 98.4 5.5E-07 1.2E-11 72.0 6.4 41 75-115 12-52 (172)
66 PRK05800 cobU adenosylcobinami 98.4 2.1E-07 4.5E-12 74.4 3.6 39 79-117 2-42 (170)
67 PRK03333 coaE dephospho-CoA ki 98.4 7.1E-07 1.5E-11 80.0 7.4 50 79-129 2-51 (395)
68 PRK12338 hypothetical protein; 98.4 9.9E-07 2.2E-11 77.3 7.9 44 76-119 2-45 (319)
69 PRK03731 aroL shikimate kinase 98.4 3.5E-07 7.5E-12 71.5 4.6 38 79-116 3-40 (171)
70 PLN02422 dephospho-CoA kinase 98.4 5.4E-07 1.2E-11 75.7 5.8 52 79-131 2-53 (232)
71 COG1936 Predicted nucleotide k 98.4 2.5E-07 5.3E-12 74.8 3.6 37 79-116 1-37 (180)
72 PRK13951 bifunctional shikimat 98.4 4.9E-07 1.1E-11 83.1 5.9 38 79-116 1-38 (488)
73 PRK13975 thymidylate kinase; P 98.4 2.1E-06 4.5E-11 68.3 8.6 49 78-134 2-50 (196)
74 PRK05057 aroK shikimate kinase 98.4 5E-07 1.1E-11 71.8 4.8 40 77-116 3-42 (172)
75 TIGR01313 therm_gnt_kin carboh 98.4 1.7E-06 3.7E-11 67.1 7.4 33 81-113 1-33 (163)
76 PRK14733 coaE dephospho-CoA ki 98.3 7.9E-07 1.7E-11 73.3 5.7 51 77-128 5-55 (204)
77 PRK09518 bifunctional cytidyla 98.3 1.7E-06 3.7E-11 82.6 8.8 38 79-116 2-39 (712)
78 PTZ00451 dephospho-CoA kinase; 98.3 7.8E-07 1.7E-11 75.2 5.7 52 79-130 2-53 (244)
79 PF01121 CoaE: Dephospho-CoA k 98.3 7.6E-07 1.7E-11 71.9 5.2 52 79-131 1-52 (180)
80 TIGR00041 DTMP_kinase thymidyl 98.3 3.4E-06 7.5E-11 67.0 8.9 51 77-133 2-55 (195)
81 TIGR03574 selen_PSTK L-seryl-t 98.3 3.4E-06 7.4E-11 70.3 7.8 35 81-116 2-41 (249)
82 PLN02924 thymidylate kinase 98.3 6.8E-06 1.5E-10 68.2 9.3 63 73-137 11-73 (220)
83 cd02019 NK Nucleoside/nucleoti 98.2 1.5E-06 3.2E-11 59.3 4.2 23 80-102 1-23 (69)
84 PRK12269 bifunctional cytidyla 98.2 1.1E-06 2.3E-11 85.8 4.8 45 72-116 28-72 (863)
85 PRK14731 coaE dephospho-CoA ki 98.2 2.4E-06 5.1E-11 69.9 6.1 50 77-127 4-53 (208)
86 KOG3354 Gluconate kinase [Carb 98.2 6.3E-06 1.4E-10 66.1 8.0 53 77-139 11-63 (191)
87 PRK08154 anaerobic benzoate ca 98.2 5.5E-06 1.2E-10 71.7 8.3 45 72-116 127-171 (309)
88 PRK13477 bifunctional pantoate 98.2 2.2E-06 4.7E-11 79.4 6.0 40 77-116 283-322 (512)
89 PF00004 AAA: ATPase family as 98.2 1.1E-06 2.5E-11 64.5 3.3 33 81-113 1-35 (132)
90 cd01672 TMPK Thymidine monopho 98.2 1E-05 2.3E-10 63.4 8.3 50 79-134 1-53 (200)
91 PF13238 AAA_18: AAA domain; P 98.2 7.3E-07 1.6E-11 65.3 1.6 22 81-102 1-22 (129)
92 PRK11860 bifunctional 3-phosph 98.2 4.5E-06 9.7E-11 79.2 7.2 40 77-116 441-480 (661)
93 TIGR02881 spore_V_K stage V sp 98.2 9.2E-06 2E-10 68.3 8.2 27 76-102 40-66 (261)
94 PRK00698 tmk thymidylate kinas 98.1 8.6E-06 1.9E-10 64.9 7.1 54 77-133 2-55 (205)
95 PRK14732 coaE dephospho-CoA ki 98.1 6.4E-06 1.4E-10 67.1 6.2 49 81-130 2-50 (196)
96 cd00227 CPT Chloramphenicol (C 98.1 3.8E-06 8.2E-11 66.4 4.0 37 78-114 2-40 (175)
97 PRK04220 2-phosphoglycerate ki 98.1 1.3E-05 2.8E-10 69.9 7.4 40 77-117 91-131 (301)
98 COG0572 Udk Uridine kinase [Nu 98.0 1E-05 2.3E-10 67.4 6.2 39 76-114 6-47 (218)
99 COG4088 Predicted nucleotide k 98.0 1.2E-05 2.7E-10 67.2 6.3 24 79-102 2-25 (261)
100 smart00382 AAA ATPases associa 98.0 3E-05 6.5E-10 55.6 7.6 28 78-105 2-29 (148)
101 PLN02165 adenylate isopentenyl 98.0 6.6E-06 1.4E-10 72.5 4.9 40 73-112 38-77 (334)
102 PRK06696 uridine kinase; Valid 98.0 6E-06 1.3E-10 67.9 4.4 39 76-114 20-63 (223)
103 PRK12724 flagellar biosynthesi 98.0 3E-05 6.6E-10 70.4 9.1 89 77-176 222-321 (432)
104 PF13401 AAA_22: AAA domain; P 98.0 2.4E-05 5.2E-10 57.8 7.0 84 77-166 3-96 (131)
105 PRK05541 adenylylsulfate kinas 98.0 6.7E-06 1.5E-10 64.7 3.8 42 75-117 4-50 (176)
106 COG1618 Predicted nucleotide k 98.0 4.3E-06 9.3E-11 67.2 2.5 43 77-119 4-46 (179)
107 PF01745 IPT: Isopentenyl tran 98.0 1.9E-05 4.2E-10 66.1 6.2 84 79-165 2-97 (233)
108 cd02024 NRK1 Nicotinamide ribo 97.9 6.4E-06 1.4E-10 67.0 3.2 35 81-115 2-37 (187)
109 PF05729 NACHT: NACHT domain 97.9 1.9E-05 4.1E-10 59.9 5.6 23 80-102 2-24 (166)
110 PRK05480 uridine/cytidine kina 97.9 9.2E-06 2E-10 65.7 4.0 39 76-114 4-45 (209)
111 CHL00181 cbbX CbbX; Provisiona 97.9 2.3E-05 5.1E-10 67.4 6.4 27 76-102 57-83 (287)
112 PHA00729 NTP-binding motif con 97.9 2.1E-05 4.7E-10 65.9 5.9 25 79-103 18-42 (226)
113 PF06414 Zeta_toxin: Zeta toxi 97.9 4E-05 8.6E-10 61.9 7.2 41 76-117 13-56 (199)
114 TIGR01663 PNK-3'Pase polynucle 97.9 1.4E-05 3E-10 74.3 4.6 38 75-112 366-403 (526)
115 PF01583 APS_kinase: Adenylyls 97.9 4.1E-05 8.9E-10 60.8 6.6 42 77-119 1-47 (156)
116 PRK12337 2-phosphoglycerate ki 97.8 7.7E-05 1.7E-09 68.5 8.7 42 76-117 253-294 (475)
117 PLN02840 tRNA dimethylallyltra 97.8 2.9E-05 6.3E-10 70.4 5.5 39 73-111 16-54 (421)
118 PF07728 AAA_5: AAA domain (dy 97.8 1.6E-05 3.5E-10 60.0 3.2 30 80-109 1-30 (139)
119 PRK00091 miaA tRNA delta(2)-is 97.8 2.2E-05 4.8E-10 68.4 4.5 36 77-112 3-38 (307)
120 TIGR00235 udk uridine kinase. 97.8 2.3E-05 4.9E-10 63.6 4.1 39 75-113 3-44 (207)
121 PF13521 AAA_28: AAA domain; P 97.8 1.2E-05 2.6E-10 62.5 2.4 33 80-115 1-33 (163)
122 PRK00889 adenylylsulfate kinas 97.8 2.1E-05 4.6E-10 61.8 3.8 36 77-112 3-43 (175)
123 TIGR02640 gas_vesic_GvpN gas v 97.8 4.2E-05 9.2E-10 64.6 5.6 32 78-109 21-52 (262)
124 TIGR00390 hslU ATP-dependent p 97.8 2.7E-05 5.8E-10 70.8 4.5 37 75-111 44-80 (441)
125 TIGR02880 cbbX_cfxQ probable R 97.8 8.4E-05 1.8E-09 63.7 7.3 26 77-102 57-82 (284)
126 COG0529 CysC Adenylylsulfate k 97.7 5.5E-05 1.2E-09 61.7 5.2 45 75-119 20-68 (197)
127 COG2019 AdkA Archaeal adenylat 97.7 6.6E-05 1.4E-09 60.8 5.6 38 78-115 4-42 (189)
128 PRK09183 transposase/IS protei 97.7 0.00015 3.2E-09 61.5 8.0 42 73-114 97-143 (259)
129 PRK15453 phosphoribulokinase; 97.7 7.5E-05 1.6E-09 64.7 6.0 39 76-114 3-46 (290)
130 TIGR03263 guanyl_kin guanylate 97.7 2.6E-05 5.6E-10 61.2 2.7 32 79-110 2-33 (180)
131 cd02028 UMPK_like Uridine mono 97.7 3E-05 6.4E-10 62.1 2.9 36 80-115 1-41 (179)
132 PRK05537 bifunctional sulfate 97.7 0.00017 3.7E-09 67.6 8.3 42 77-119 391-438 (568)
133 PRK14738 gmk guanylate kinase; 97.7 4.9E-05 1.1E-09 62.0 4.0 34 68-101 3-36 (206)
134 PRK05201 hslU ATP-dependent pr 97.7 5.1E-05 1.1E-09 69.1 4.5 36 76-111 48-83 (443)
135 cd02023 UMPK Uridine monophosp 97.6 3.8E-05 8.3E-10 61.5 3.2 34 81-114 2-38 (198)
136 PRK07667 uridine kinase; Provi 97.6 5.3E-05 1.2E-09 61.1 4.0 39 77-115 16-59 (193)
137 PTZ00301 uridine kinase; Provi 97.6 4.1E-05 8.8E-10 63.3 3.3 39 77-115 2-47 (210)
138 PRK03846 adenylylsulfate kinas 97.6 3.9E-05 8.5E-10 61.9 3.1 33 70-102 16-48 (198)
139 PRK09825 idnK D-gluconate kina 97.6 6.3E-05 1.4E-09 60.2 4.1 35 78-112 3-37 (176)
140 cd00009 AAA The AAA+ (ATPases 97.6 7.5E-05 1.6E-09 54.2 4.1 32 78-109 19-53 (151)
141 PF00485 PRK: Phosphoribulokin 97.6 5.1E-05 1.1E-09 60.9 3.4 24 80-103 1-24 (194)
142 TIGR02322 phosphon_PhnN phosph 97.6 5.3E-05 1.1E-09 59.6 3.4 26 79-104 2-27 (179)
143 PRK10078 ribose 1,5-bisphospho 97.6 4.8E-05 1E-09 60.7 3.2 36 79-114 3-38 (186)
144 KOG0744 AAA+-type ATPase [Post 97.6 0.0001 2.2E-09 65.4 5.4 29 79-107 178-206 (423)
145 TIGR00174 miaA tRNA isopenteny 97.6 5.9E-05 1.3E-09 65.3 3.8 31 81-111 2-32 (287)
146 cd02027 APSK Adenosine 5'-phos 97.6 8.2E-05 1.8E-09 57.7 4.2 36 81-117 2-42 (149)
147 COG1484 DnaC DNA replication p 97.6 0.00026 5.7E-09 59.9 7.6 42 77-118 104-150 (254)
148 PF01202 SKI: Shikimate kinase 97.6 3.8E-05 8.2E-10 59.9 2.3 32 87-118 1-32 (158)
149 COG3265 GntK Gluconate kinase 97.6 0.00017 3.6E-09 57.4 5.8 31 84-114 1-31 (161)
150 PF01695 IstB_IS21: IstB-like 97.6 8.4E-05 1.8E-09 59.6 4.3 46 72-117 41-91 (178)
151 PF05496 RuvB_N: Holliday junc 97.6 6.1E-05 1.3E-09 63.4 3.6 32 78-109 50-81 (233)
152 PRK05439 pantothenate kinase; 97.6 6.6E-05 1.4E-09 65.6 3.9 39 76-114 84-129 (311)
153 TIGR01241 FtsH_fam ATP-depende 97.6 0.00028 6.1E-09 64.7 8.0 34 77-110 87-120 (495)
154 cd00544 CobU Adenosylcobinamid 97.5 9.9E-05 2.1E-09 59.0 4.0 30 81-110 2-33 (169)
155 PRK08181 transposase; Validate 97.5 7.8E-05 1.7E-09 63.8 3.6 43 74-116 102-149 (269)
156 PLN02748 tRNA dimethylallyltra 97.5 8.1E-05 1.7E-09 68.4 3.9 36 76-111 20-55 (468)
157 PF08433 KTI12: Chromatin asso 97.5 0.00028 6.1E-09 60.4 7.0 35 79-113 2-41 (270)
158 PRK12377 putative replication 97.5 0.00047 1E-08 58.4 8.1 37 79-115 102-143 (248)
159 PRK00300 gmk guanylate kinase; 97.5 0.00011 2.4E-09 58.8 3.9 27 77-103 4-30 (205)
160 TIGR03575 selen_PSTK_euk L-ser 97.5 0.00012 2.5E-09 64.9 4.2 35 81-115 2-42 (340)
161 PRK11545 gntK gluconate kinase 97.5 7.3E-05 1.6E-09 58.9 2.6 29 84-112 1-29 (163)
162 KOG0733 Nuclear AAA ATPase (VC 97.5 0.00027 5.8E-09 67.0 6.5 33 79-111 224-256 (802)
163 KOG3220 Similar to bacterial d 97.5 0.00036 7.9E-09 58.0 6.6 52 79-131 2-53 (225)
164 PRK06761 hypothetical protein; 97.4 0.00012 2.6E-09 63.2 3.8 33 78-110 3-35 (282)
165 TIGR00455 apsK adenylylsulfate 97.4 0.00014 3.1E-09 57.6 4.0 40 76-116 16-60 (184)
166 PHA02575 1 deoxynucleoside mon 97.4 0.00011 2.4E-09 61.7 3.4 38 79-117 1-39 (227)
167 cd02025 PanK Pantothenate kina 97.4 9.8E-05 2.1E-09 61.1 3.0 33 81-113 2-41 (220)
168 PRK03992 proteasome-activating 97.4 0.00014 2.9E-09 65.0 4.0 38 77-114 164-203 (389)
169 TIGR01650 PD_CobS cobaltochela 97.4 0.00012 2.5E-09 64.6 3.5 32 78-109 64-95 (327)
170 CHL00195 ycf46 Ycf46; Provisio 97.4 0.00014 3E-09 67.1 4.2 34 77-110 258-291 (489)
171 PF03266 NTPase_1: NTPase; In 97.4 0.00012 2.6E-09 58.3 3.3 23 80-102 1-23 (168)
172 cd02030 NDUO42 NADH:Ubiquinone 97.4 0.00059 1.3E-08 56.0 7.4 29 80-108 1-29 (219)
173 COG0645 Predicted kinase [Gene 97.4 0.00087 1.9E-08 54.0 8.0 39 80-119 3-41 (170)
174 cd01673 dNK Deoxyribonucleosid 97.4 0.00014 3E-09 57.8 3.4 27 81-107 2-28 (193)
175 PRK06526 transposase; Provisio 97.4 0.00011 2.5E-09 62.2 2.9 46 71-116 91-141 (254)
176 smart00763 AAA_PrkA PrkA AAA d 97.4 0.00016 3.4E-09 64.5 3.9 28 77-104 77-104 (361)
177 PRK05342 clpX ATP-dependent pr 97.4 0.00016 3.4E-09 65.4 3.9 34 77-110 107-140 (412)
178 PLN00020 ribulose bisphosphate 97.4 0.00018 3.9E-09 64.8 4.1 41 76-116 146-188 (413)
179 TIGR01242 26Sp45 26S proteasom 97.4 0.0002 4.4E-09 63.0 4.3 34 77-110 155-188 (364)
180 COG2074 2-phosphoglycerate kin 97.4 0.00023 5E-09 61.1 4.3 44 75-118 86-129 (299)
181 cd03115 SRP The signal recogni 97.3 0.0018 3.9E-08 50.6 9.2 31 80-110 2-37 (173)
182 PRK08099 bifunctional DNA-bind 97.3 0.00021 4.5E-09 64.4 4.1 31 77-107 218-248 (399)
183 PRK07429 phosphoribulokinase; 97.3 0.00023 4.9E-09 62.6 4.2 38 76-113 6-46 (327)
184 PF13173 AAA_14: AAA domain 97.3 0.00026 5.7E-09 53.1 4.0 38 78-115 2-43 (128)
185 TIGR00554 panK_bact pantothena 97.3 0.00021 4.6E-09 61.9 3.8 39 76-114 60-105 (290)
186 PRK14737 gmk guanylate kinase; 97.3 0.00023 5E-09 57.5 3.7 26 77-102 3-28 (186)
187 PHA02244 ATPase-like protein 97.3 0.00022 4.8E-09 64.0 3.8 39 76-114 117-155 (383)
188 COG2256 MGS1 ATPase related to 97.3 0.0003 6.4E-09 63.6 4.6 36 77-112 47-82 (436)
189 PRK08533 flagellar accessory p 97.3 0.00056 1.2E-08 56.9 5.9 35 76-110 22-61 (230)
190 TIGR00382 clpX endopeptidase C 97.3 0.00024 5.2E-09 64.4 3.9 32 78-109 116-147 (413)
191 PTZ00454 26S protease regulato 97.3 0.00027 5.9E-09 63.6 4.2 34 77-110 178-211 (398)
192 CHL00176 ftsH cell division pr 97.3 0.001 2.2E-08 63.4 8.1 33 78-110 216-248 (638)
193 cd01124 KaiC KaiC is a circadi 97.3 0.00021 4.7E-09 55.9 2.9 33 81-113 2-39 (187)
194 PRK06921 hypothetical protein; 97.2 0.00027 5.9E-09 60.2 3.6 38 78-115 117-160 (266)
195 COG0466 Lon ATP-dependent Lon 97.2 0.00029 6.3E-09 67.5 4.1 37 75-111 347-385 (782)
196 COG0324 MiaA tRNA delta(2)-iso 97.2 0.00038 8.2E-09 60.9 4.4 36 77-112 2-37 (308)
197 cd02029 PRK_like Phosphoribulo 97.2 0.00057 1.2E-08 58.9 5.4 35 80-114 1-40 (277)
198 TIGR00635 ruvB Holliday juncti 97.2 0.00038 8.3E-09 59.1 4.3 30 77-106 29-58 (305)
199 TIGR01243 CDC48 AAA family ATP 97.2 0.0013 2.9E-08 63.1 8.5 33 78-110 487-519 (733)
200 PF06745 KaiC: KaiC; InterPro 97.2 0.00066 1.4E-08 55.4 5.5 88 75-166 16-124 (226)
201 TIGR01526 nadR_NMN_Atrans nico 97.2 0.00035 7.5E-09 61.2 4.0 31 78-108 162-192 (325)
202 TIGR02655 circ_KaiC circadian 97.2 0.00039 8.4E-09 63.8 4.5 89 75-167 260-363 (484)
203 TIGR03015 pepcterm_ATPase puta 97.2 0.00069 1.5E-08 56.2 5.6 26 78-103 43-68 (269)
204 PF03029 ATP_bind_1: Conserved 97.2 0.00068 1.5E-08 56.9 5.6 21 83-103 1-21 (238)
205 KOG0737 AAA+-type ATPase [Post 97.2 0.00025 5.4E-09 63.3 3.0 52 64-115 113-166 (386)
206 PLN02348 phosphoribulokinase 97.2 0.00036 7.9E-09 62.9 4.0 28 76-103 47-74 (395)
207 PF07724 AAA_2: AAA domain (Cd 97.2 0.00041 8.8E-09 55.4 3.9 37 78-114 3-45 (171)
208 TIGR02928 orc1/cdc6 family rep 97.2 0.0014 3E-08 56.9 7.3 26 77-102 39-64 (365)
209 PRK04195 replication factor C 97.2 0.00037 8.1E-09 63.7 3.9 32 78-109 39-70 (482)
210 PF01591 6PF2K: 6-phosphofruct 97.2 0.0022 4.7E-08 53.7 8.2 89 76-174 10-112 (222)
211 PF07931 CPT: Chloramphenicol 97.2 0.00037 8E-09 56.2 3.4 37 79-115 2-40 (174)
212 PRK13342 recombination factor 97.2 0.00044 9.5E-09 62.0 4.2 34 77-110 35-68 (413)
213 PRK06067 flagellar accessory p 97.1 0.00051 1.1E-08 56.5 4.2 49 65-113 11-65 (234)
214 KOG0731 AAA+-type ATPase conta 97.1 0.0003 6.4E-09 67.9 3.1 40 77-116 343-384 (774)
215 PF00910 RNA_helicase: RNA hel 97.1 0.00032 6.9E-09 51.5 2.6 23 81-103 1-23 (107)
216 PF00931 NB-ARC: NB-ARC domain 97.1 0.00081 1.8E-08 56.1 5.3 83 76-167 17-111 (287)
217 cd00071 GMPK Guanosine monopho 97.1 0.00035 7.5E-09 53.6 2.8 23 81-103 2-24 (137)
218 PRK00080 ruvB Holliday junctio 97.1 0.00045 9.8E-09 59.9 3.9 30 78-107 51-80 (328)
219 TIGR00064 ftsY signal recognit 97.1 0.0024 5.3E-08 54.6 8.3 27 76-102 70-96 (272)
220 TIGR03420 DnaA_homol_Hda DnaA 97.1 0.00034 7.3E-09 56.6 2.9 38 76-113 36-78 (226)
221 TIGR00150 HI0065_YjeE ATPase, 97.1 0.00054 1.2E-08 53.1 3.8 30 76-105 20-49 (133)
222 COG1428 Deoxynucleoside kinase 97.1 0.00048 1.1E-08 57.4 3.7 31 78-108 4-34 (216)
223 PF08477 Miro: Miro-like prote 97.1 0.00046 9.9E-09 50.0 3.1 23 80-102 1-23 (119)
224 PRK09087 hypothetical protein; 97.1 0.00036 7.8E-09 58.0 2.9 33 79-111 45-77 (226)
225 PF08303 tRNA_lig_kinase: tRNA 97.1 0.0018 3.9E-08 52.1 6.8 32 81-112 2-34 (168)
226 PTZ00361 26 proteosome regulat 97.1 0.00051 1.1E-08 62.7 4.1 33 77-109 216-248 (438)
227 PF00448 SRP54: SRP54-type pro 97.1 0.00047 1E-08 56.2 3.5 33 78-110 1-38 (196)
228 PRK00411 cdc6 cell division co 97.1 0.0022 4.8E-08 56.3 8.0 27 76-102 53-79 (394)
229 PRK08116 hypothetical protein; 97.1 0.00087 1.9E-08 57.1 5.3 39 78-116 114-157 (268)
230 COG1223 Predicted ATPase (AAA+ 97.1 0.00041 9E-09 60.2 3.2 41 77-117 150-192 (368)
231 PRK08903 DnaA regulatory inact 97.1 0.00046 9.9E-09 56.4 3.3 36 78-113 42-82 (227)
232 PLN02796 D-glycerate 3-kinase 97.1 0.00061 1.3E-08 60.5 4.2 38 76-113 98-140 (347)
233 PRK14729 miaA tRNA delta(2)-is 97.1 0.00067 1.4E-08 59.1 4.4 34 77-111 3-36 (300)
234 TIGR03877 thermo_KaiC_1 KaiC d 97.1 0.0011 2.4E-08 54.9 5.6 47 65-111 7-59 (237)
235 PF02223 Thymidylate_kin: Thym 97.1 0.0016 3.6E-08 51.4 6.3 50 83-135 1-50 (186)
236 COG1222 RPT1 ATP-dependent 26S 97.1 0.001 2.3E-08 59.5 5.5 58 65-122 169-231 (406)
237 PRK06620 hypothetical protein; 97.1 0.00042 9.2E-09 57.1 2.9 30 79-108 45-74 (214)
238 COG1219 ClpX ATP-dependent pro 97.0 0.00052 1.1E-08 60.8 3.5 34 76-109 95-128 (408)
239 KOG0730 AAA+-type ATPase [Post 97.0 0.00062 1.3E-08 64.6 4.1 43 75-117 465-509 (693)
240 PRK09270 nucleoside triphospha 97.0 0.00067 1.5E-08 55.9 3.8 39 75-113 30-74 (229)
241 PRK06835 DNA replication prote 97.0 0.001 2.2E-08 58.6 5.1 39 78-116 183-226 (329)
242 COG0125 Tmk Thymidylate kinase 97.0 0.0028 6E-08 52.5 7.4 55 77-134 2-56 (208)
243 PRK12402 replication factor C 97.0 0.00068 1.5E-08 57.9 3.9 25 79-103 37-61 (337)
244 PRK13976 thymidylate kinase; P 97.0 0.0035 7.5E-08 51.6 7.8 48 80-133 2-54 (209)
245 PRK07952 DNA replication prote 97.0 0.002 4.3E-08 54.5 6.5 36 80-115 101-141 (244)
246 COG1220 HslU ATP-dependent pro 97.0 0.00064 1.4E-08 60.7 3.6 40 71-110 43-82 (444)
247 PRK06893 DNA replication initi 97.0 0.00068 1.5E-08 56.1 3.5 33 78-110 39-76 (229)
248 KOG2004 Mitochondrial ATP-depe 97.0 0.00067 1.5E-08 65.2 3.8 40 75-114 435-476 (906)
249 COG2255 RuvB Holliday junction 97.0 0.00068 1.5E-08 59.2 3.5 35 80-114 54-89 (332)
250 COG0464 SpoVK ATPases of the A 97.0 0.0007 1.5E-08 61.8 3.8 35 77-111 275-309 (494)
251 PRK04328 hypothetical protein; 97.0 0.0016 3.4E-08 54.7 5.6 47 65-111 9-61 (249)
252 PF07726 AAA_3: ATPase family 97.0 0.0004 8.6E-09 53.8 1.8 30 80-109 1-30 (131)
253 PF10662 PduV-EutP: Ethanolami 96.9 0.00062 1.3E-08 53.4 2.8 24 78-101 1-24 (143)
254 PRK08939 primosomal protein Dn 96.9 0.0028 6E-08 55.2 7.1 40 77-116 155-199 (306)
255 PF13245 AAA_19: Part of AAA d 96.9 0.00093 2E-08 46.7 3.3 25 78-102 10-35 (76)
256 TIGR00763 lon ATP-dependent pr 96.9 0.00078 1.7E-08 65.2 3.9 33 77-109 346-378 (775)
257 cd01120 RecA-like_NTPases RecA 96.9 0.00072 1.6E-08 50.6 2.8 33 80-112 1-38 (165)
258 cd02026 PRK Phosphoribulokinas 96.9 0.00069 1.5E-08 58.0 3.0 33 81-113 2-37 (273)
259 KOG0739 AAA+-type ATPase [Post 96.9 0.0015 3.2E-08 57.8 5.0 46 80-125 168-215 (439)
260 PRK13695 putative NTPase; Prov 96.9 0.00086 1.9E-08 52.7 3.3 24 79-102 1-24 (174)
261 PF03215 Rad17: Rad17 cell cyc 96.9 0.00097 2.1E-08 62.1 4.1 32 79-110 46-77 (519)
262 TIGR03881 KaiC_arch_4 KaiC dom 96.9 0.0022 4.8E-08 52.3 5.7 38 74-111 16-58 (229)
263 PRK08084 DNA replication initi 96.9 0.00068 1.5E-08 56.4 2.7 33 79-111 46-83 (235)
264 KOG0735 AAA+-type ATPase [Post 96.9 0.0028 6.2E-08 61.1 7.1 54 65-119 689-744 (952)
265 PRK05506 bifunctional sulfate 96.9 0.00084 1.8E-08 63.5 3.6 42 76-118 458-504 (632)
266 cd04163 Era Era subfamily. Er 96.9 0.00096 2.1E-08 49.6 3.2 25 77-101 2-26 (168)
267 PLN03046 D-glycerate 3-kinase; 96.9 0.001 2.2E-08 60.8 3.8 38 76-113 210-252 (460)
268 KOG0733 Nuclear AAA ATPase (VC 96.8 0.00082 1.8E-08 63.7 3.2 41 78-118 545-587 (802)
269 CHL00206 ycf2 Ycf2; Provisiona 96.8 0.00092 2E-08 69.9 3.8 38 77-114 1629-1668(2281)
270 cd01131 PilT Pilus retraction 96.8 0.0017 3.6E-08 52.6 4.6 24 80-103 3-26 (198)
271 TIGR00678 holB DNA polymerase 96.8 0.0037 8E-08 49.6 6.5 28 77-104 13-40 (188)
272 COG4639 Predicted kinase [Gene 96.8 0.0045 9.7E-08 49.7 6.9 32 79-112 3-34 (168)
273 PF00625 Guanylate_kin: Guanyl 96.8 0.0012 2.5E-08 52.5 3.6 26 78-103 2-27 (183)
274 TIGR01243 CDC48 AAA family ATP 96.8 0.0011 2.4E-08 63.6 4.0 34 77-110 211-244 (733)
275 PRK12723 flagellar biosynthesi 96.8 0.0035 7.6E-08 56.4 7.0 26 77-102 173-198 (388)
276 TIGR03689 pup_AAA proteasome A 96.8 0.00093 2E-08 62.1 3.3 29 77-105 215-243 (512)
277 KOG1532 GTPase XAB1, interacts 96.8 0.0068 1.5E-07 53.0 8.3 45 72-116 13-62 (366)
278 PLN03025 replication factor C 96.8 0.0012 2.5E-08 57.2 3.6 25 78-102 34-58 (319)
279 COG0714 MoxR-like ATPases [Gen 96.8 0.0011 2.4E-08 57.6 3.4 33 77-109 42-74 (329)
280 PRK11034 clpA ATP-dependent Cl 96.8 0.0015 3.3E-08 63.3 4.6 34 76-109 485-519 (758)
281 PF13189 Cytidylate_kin2: Cyti 96.8 0.0037 8E-08 49.9 6.1 38 80-118 1-38 (179)
282 PLN02318 phosphoribulokinase/u 96.8 0.0012 2.6E-08 62.7 3.7 36 77-112 64-100 (656)
283 PRK14961 DNA polymerase III su 96.8 0.0013 2.8E-08 58.1 3.8 27 78-104 38-64 (363)
284 PF06309 Torsin: Torsin; Inte 96.8 0.0017 3.8E-08 50.0 4.0 29 74-102 49-77 (127)
285 PRK11331 5-methylcytosine-spec 96.8 0.0019 4.2E-08 59.3 4.9 28 77-104 193-220 (459)
286 PRK04301 radA DNA repair and r 96.8 0.0078 1.7E-07 52.1 8.4 38 74-111 98-146 (317)
287 PF13191 AAA_16: AAA ATPase do 96.7 0.0012 2.7E-08 51.0 3.1 27 76-102 22-48 (185)
288 PRK14962 DNA polymerase III su 96.7 0.0014 3E-08 60.3 3.7 28 78-105 36-63 (472)
289 cd04155 Arl3 Arl3 subfamily. 96.7 0.0013 2.8E-08 50.4 3.0 26 76-101 12-37 (173)
290 PF01078 Mg_chelatase: Magnesi 96.7 0.0011 2.3E-08 55.0 2.6 32 78-111 22-53 (206)
291 TIGR02639 ClpA ATP-dependent C 96.7 0.0016 3.4E-08 62.7 4.1 38 75-112 480-520 (731)
292 PRK12323 DNA polymerase III su 96.7 0.0052 1.1E-07 58.9 7.4 28 77-104 37-64 (700)
293 cd04119 RJL RJL (RabJ-Like) su 96.7 0.0014 3E-08 49.4 2.9 23 79-101 1-23 (168)
294 PRK09302 circadian clock prote 96.7 0.0026 5.7E-08 58.4 5.2 89 75-166 270-372 (509)
295 COG1224 TIP49 DNA helicase TIP 96.7 0.0017 3.7E-08 58.3 3.7 43 77-119 64-110 (450)
296 PRK10787 DNA-binding ATP-depen 96.7 0.0017 3.7E-08 63.1 4.1 33 77-109 348-380 (784)
297 PF13479 AAA_24: AAA domain 96.7 0.0013 2.8E-08 53.9 2.8 32 77-111 2-33 (213)
298 COG0194 Gmk Guanylate kinase [ 96.7 0.0039 8.4E-08 51.1 5.5 37 77-114 3-39 (191)
299 TIGR02655 circ_KaiC circadian 96.7 0.0031 6.7E-08 57.9 5.6 47 65-111 7-60 (484)
300 PHA02544 44 clamp loader, smal 96.7 0.0019 4.1E-08 55.1 3.8 29 78-106 43-71 (316)
301 PRK13341 recombination factor 96.7 0.0019 4.1E-08 62.4 4.2 36 77-112 51-86 (725)
302 TIGR00101 ureG urease accessor 96.7 0.0019 4.1E-08 52.7 3.6 25 78-102 1-25 (199)
303 PF01926 MMR_HSR1: 50S ribosom 96.6 0.0016 3.5E-08 47.4 2.8 21 80-100 1-21 (116)
304 cd01393 recA_like RecA is a b 96.6 0.0037 8.1E-08 50.6 5.2 28 74-101 15-42 (226)
305 PRK05416 glmZ(sRNA)-inactivati 96.6 0.002 4.2E-08 55.8 3.8 32 77-109 5-36 (288)
306 KOG0745 Putative ATP-dependent 96.6 0.0037 8E-08 57.4 5.6 34 76-109 224-257 (564)
307 cd04138 H_N_K_Ras_like H-Ras/N 96.6 0.0019 4.1E-08 48.4 3.1 23 79-101 2-24 (162)
308 KOG1533 Predicted GTPase [Gene 96.6 0.0012 2.6E-08 56.3 2.2 22 81-102 5-26 (290)
309 PRK14722 flhF flagellar biosyn 96.6 0.0022 4.7E-08 57.5 4.0 37 66-102 125-161 (374)
310 KOG0991 Replication factor C, 96.6 0.0038 8.3E-08 53.6 5.2 27 76-102 46-72 (333)
311 TIGR02237 recomb_radB DNA repa 96.6 0.0027 5.7E-08 51.0 4.1 38 74-111 8-50 (209)
312 PRK10751 molybdopterin-guanine 96.6 0.0017 3.7E-08 52.4 2.9 27 77-103 5-31 (173)
313 PRK15455 PrkA family serine pr 96.6 0.0018 3.9E-08 61.3 3.4 27 77-103 102-128 (644)
314 TIGR00362 DnaA chromosomal rep 96.6 0.0057 1.2E-07 54.5 6.5 36 80-115 138-180 (405)
315 smart00175 RAB Rab subfamily o 96.6 0.0018 4E-08 48.8 2.9 23 79-101 1-23 (164)
316 TIGR00231 small_GTP small GTP- 96.6 0.0021 4.5E-08 46.9 3.1 24 79-102 2-25 (161)
317 cd00154 Rab Rab family. Rab G 96.6 0.0018 3.8E-08 47.8 2.7 23 79-101 1-23 (159)
318 PRK06645 DNA polymerase III su 96.6 0.002 4.4E-08 59.8 3.7 30 77-106 42-71 (507)
319 KOG3877 NADH:ubiquinone oxidor 96.6 0.0023 4.9E-08 55.9 3.7 39 76-114 69-110 (393)
320 KOG0989 Replication factor C, 96.6 0.0036 7.8E-08 55.1 4.9 38 77-114 56-93 (346)
321 smart00173 RAS Ras subfamily o 96.6 0.0021 4.4E-08 48.8 3.0 21 80-100 2-22 (164)
322 KOG0738 AAA+-type ATPase [Post 96.5 0.002 4.4E-08 58.4 3.4 32 80-111 247-278 (491)
323 PRK10416 signal recognition pa 96.5 0.0024 5.1E-08 55.9 3.7 27 76-102 112-138 (318)
324 PRK10867 signal recognition pa 96.5 0.014 3E-07 53.4 8.8 35 76-110 98-138 (433)
325 PF00308 Bac_DnaA: Bacterial d 96.5 0.0054 1.2E-07 50.6 5.7 35 81-115 37-78 (219)
326 PF06068 TIP49: TIP49 C-termin 96.5 0.0022 4.8E-08 57.7 3.5 41 78-118 50-94 (398)
327 TIGR02525 plasmid_TraJ plasmid 96.5 0.0048 1E-07 55.3 5.6 87 80-175 151-242 (372)
328 cd00157 Rho Rho (Ras homology) 96.5 0.0021 4.6E-08 48.9 3.0 23 79-101 1-23 (171)
329 PRK05707 DNA polymerase III su 96.5 0.0071 1.5E-07 53.1 6.6 30 76-105 20-49 (328)
330 PRK07003 DNA polymerase III su 96.5 0.009 1.9E-07 58.2 7.8 28 78-105 38-65 (830)
331 PRK10733 hflB ATP-dependent me 96.5 0.0023 5E-08 60.9 3.7 32 79-110 186-217 (644)
332 PRK14974 cell division protein 96.5 0.0024 5.3E-08 56.4 3.6 26 77-102 139-164 (336)
333 cd04136 Rap_like Rap-like subf 96.5 0.0025 5.5E-08 48.0 3.2 22 79-100 2-23 (163)
334 cd01123 Rad51_DMC1_radA Rad51_ 96.5 0.0033 7.2E-08 51.2 4.1 28 74-101 15-42 (235)
335 PRK14086 dnaA chromosomal repl 96.5 0.006 1.3E-07 57.9 6.3 35 81-115 317-358 (617)
336 TIGR00959 ffh signal recogniti 96.5 0.017 3.6E-07 52.7 9.0 35 76-110 97-137 (428)
337 PRK14956 DNA polymerase III su 96.5 0.0024 5.3E-08 59.0 3.6 28 78-105 40-67 (484)
338 PRK09435 membrane ATPase/prote 96.5 0.0028 6.1E-08 55.9 3.8 27 76-102 54-80 (332)
339 COG4619 ABC-type uncharacteriz 96.5 0.002 4.4E-08 52.8 2.6 39 63-101 14-52 (223)
340 cd04113 Rab4 Rab4 subfamily. 96.5 0.0022 4.9E-08 48.6 2.7 22 79-100 1-22 (161)
341 PRK10575 iron-hydroxamate tran 96.5 0.0019 4.2E-08 54.2 2.6 35 68-102 27-61 (265)
342 TIGR03499 FlhF flagellar biosy 96.5 0.0033 7.2E-08 53.8 4.0 35 76-110 192-233 (282)
343 TIGR03880 KaiC_arch_3 KaiC dom 96.5 0.0056 1.2E-07 49.9 5.2 40 75-114 13-57 (224)
344 PF01443 Viral_helicase1: Vira 96.4 0.0019 4.1E-08 52.3 2.4 22 81-102 1-22 (234)
345 KOG0734 AAA+-type ATPase conta 96.4 0.0021 4.5E-08 60.4 2.9 33 78-110 337-369 (752)
346 cd01862 Rab7 Rab7 subfamily. 96.4 0.0023 5E-08 48.7 2.7 23 79-101 1-23 (172)
347 PRK05642 DNA replication initi 96.4 0.0022 4.7E-08 53.4 2.7 36 79-114 46-86 (234)
348 PRK07933 thymidylate kinase; V 96.4 0.0029 6.3E-08 52.0 3.4 25 79-103 1-25 (213)
349 cd01130 VirB11-like_ATPase Typ 96.4 0.0027 5.8E-08 50.7 3.1 27 76-102 23-49 (186)
350 cd01394 radB RadB. The archaea 96.4 0.0039 8.5E-08 50.5 4.1 37 75-111 16-57 (218)
351 PRK14264 phosphate ABC transpo 96.4 0.0027 5.8E-08 54.7 3.2 59 44-102 33-95 (305)
352 cd00876 Ras Ras family. The R 96.4 0.0023 5E-08 47.8 2.5 21 80-100 1-21 (160)
353 cd01895 EngA2 EngA2 subfamily. 96.4 0.0027 5.8E-08 47.7 2.8 25 77-101 1-25 (174)
354 PRK14963 DNA polymerase III su 96.4 0.0028 6.1E-08 58.8 3.5 28 77-104 35-62 (504)
355 PF03205 MobB: Molybdopterin g 96.4 0.0032 6.8E-08 48.7 3.2 24 79-102 1-24 (140)
356 KOG3308 Uncharacterized protei 96.4 0.011 2.4E-07 49.3 6.5 38 78-115 4-42 (225)
357 PTZ00322 6-phosphofructo-2-kin 96.4 0.015 3.2E-07 55.5 8.3 31 77-107 214-244 (664)
358 KOG1969 DNA replication checkp 96.4 0.0039 8.5E-08 60.2 4.4 34 77-110 325-358 (877)
359 KOG0743 AAA+-type ATPase [Post 96.4 0.0025 5.4E-08 58.3 3.0 29 81-109 238-266 (457)
360 KOG1970 Checkpoint RAD17-RFC c 96.4 0.0029 6.4E-08 59.3 3.4 31 80-110 112-142 (634)
361 TIGR03345 VI_ClpV1 type VI sec 96.4 0.0037 8E-08 61.3 4.3 41 74-114 591-637 (852)
362 PRK14955 DNA polymerase III su 96.4 0.0033 7.2E-08 56.2 3.6 28 78-105 38-65 (397)
363 cd01128 rho_factor Transcripti 96.4 0.0031 6.7E-08 53.4 3.2 30 76-105 14-43 (249)
364 cd04164 trmE TrmE (MnmE, ThdF, 96.3 0.0033 7.2E-08 46.7 3.0 24 78-101 1-24 (157)
365 TIGR01618 phage_P_loop phage n 96.3 0.0025 5.3E-08 53.2 2.5 24 77-100 11-34 (220)
366 PF00005 ABC_tran: ABC transpo 96.3 0.0027 6E-08 47.3 2.4 27 76-102 9-35 (137)
367 PRK07940 DNA polymerase III su 96.3 0.017 3.6E-07 52.1 7.9 29 77-105 35-63 (394)
368 PRK14964 DNA polymerase III su 96.3 0.0035 7.5E-08 58.1 3.6 29 77-105 34-62 (491)
369 cd01867 Rab8_Rab10_Rab13_like 96.3 0.004 8.6E-08 47.8 3.4 25 77-101 2-26 (167)
370 cd04145 M_R_Ras_like M-Ras/R-R 96.3 0.004 8.7E-08 47.0 3.3 24 78-101 2-25 (164)
371 cd00879 Sar1 Sar1 subfamily. 96.3 0.0037 8.1E-08 48.9 3.2 25 76-100 17-41 (190)
372 cd04139 RalA_RalB RalA/RalB su 96.3 0.0034 7.3E-08 47.2 2.9 21 80-100 2-22 (164)
373 COG0470 HolB ATPase involved i 96.3 0.0093 2E-07 50.4 5.9 25 80-104 26-50 (325)
374 TIGR00750 lao LAO/AO transport 96.3 0.0041 9E-08 53.5 3.8 28 75-102 31-58 (300)
375 PRK05973 replicative DNA helic 96.3 0.0031 6.7E-08 53.2 2.9 48 63-111 50-102 (237)
376 TIGR02639 ClpA ATP-dependent C 96.3 0.0037 8.1E-08 60.1 3.8 26 77-102 202-227 (731)
377 cd01983 Fer4_NifH The Fer4_Nif 96.3 0.0052 1.1E-07 41.9 3.5 31 81-111 2-35 (99)
378 cd01918 HprK_C HprK/P, the bif 96.3 0.0058 1.3E-07 48.2 4.1 33 77-110 13-45 (149)
379 TIGR02788 VirB11 P-type DNA tr 96.3 0.0048 1E-07 53.4 4.0 26 77-102 143-168 (308)
380 TIGR01420 pilT_fam pilus retra 96.3 0.0071 1.5E-07 53.1 5.1 35 78-112 122-160 (343)
381 cd04137 RheB Rheb (Ras Homolog 96.3 0.0039 8.5E-08 48.3 3.1 23 79-101 2-24 (180)
382 PRK12422 chromosomal replicati 96.3 0.0098 2.1E-07 54.3 6.2 35 80-114 143-182 (445)
383 PRK14957 DNA polymerase III su 96.3 0.004 8.7E-08 58.4 3.7 27 78-104 38-64 (546)
384 PRK13768 GTPase; Provisional 96.3 0.0041 8.9E-08 52.4 3.4 33 78-110 2-39 (253)
385 cd04115 Rab33B_Rab33A Rab33B/R 96.3 0.0042 9E-08 48.0 3.2 23 78-100 2-24 (170)
386 COG1855 ATPase (PilT family) [ 96.2 0.0034 7.3E-08 58.0 3.1 23 80-102 265-287 (604)
387 PRK00771 signal recognition pa 96.2 0.0042 9.1E-08 56.7 3.7 27 76-102 93-119 (437)
388 PF13086 AAA_11: AAA domain; P 96.2 0.0038 8.3E-08 49.5 3.1 23 80-102 19-41 (236)
389 PRK14949 DNA polymerase III su 96.2 0.0039 8.4E-08 61.5 3.6 28 78-105 38-65 (944)
390 PRK05564 DNA polymerase III su 96.2 0.015 3.2E-07 50.1 6.8 29 76-104 24-52 (313)
391 PRK14969 DNA polymerase III su 96.2 0.0043 9.3E-08 57.8 3.7 28 78-105 38-65 (527)
392 cd04160 Arfrp1 Arfrp1 subfamil 96.2 0.0035 7.6E-08 47.6 2.6 23 80-102 1-23 (167)
393 cd04124 RabL2 RabL2 subfamily. 96.2 0.0041 8.8E-08 47.7 3.0 22 79-100 1-22 (161)
394 TIGR01166 cbiO cobalt transpor 96.2 0.0039 8.5E-08 49.5 3.0 34 69-102 9-42 (190)
395 PRK14490 putative bifunctional 96.2 0.0048 1E-07 54.7 3.8 30 76-105 3-32 (369)
396 PRK07764 DNA polymerase III su 96.2 0.012 2.7E-07 57.6 6.9 29 77-105 36-64 (824)
397 PRK14958 DNA polymerase III su 96.2 0.0042 9.2E-08 57.6 3.6 29 77-105 37-65 (509)
398 cd03264 ABC_drug_resistance_li 96.2 0.0033 7.2E-08 50.6 2.5 30 72-102 20-49 (211)
399 PRK14960 DNA polymerase III su 96.2 0.0045 9.7E-08 59.4 3.8 28 78-105 37-64 (702)
400 cd04177 RSR1 RSR1 subgroup. R 96.2 0.0043 9.3E-08 47.7 3.1 23 79-101 2-24 (168)
401 cd01860 Rab5_related Rab5-rela 96.2 0.0042 9.1E-08 46.9 3.0 23 79-101 2-24 (163)
402 PRK00440 rfc replication facto 96.2 0.0048 1E-07 52.2 3.6 24 79-102 39-62 (319)
403 TIGR02782 TrbB_P P-type conjug 96.2 0.0052 1.1E-07 53.2 3.8 38 77-114 131-173 (299)
404 cd04123 Rab21 Rab21 subfamily. 96.2 0.0043 9.4E-08 46.4 2.9 23 79-101 1-23 (162)
405 cd03292 ABC_FtsE_transporter F 96.2 0.0044 9.6E-08 49.8 3.2 30 73-102 22-51 (214)
406 CHL00095 clpC Clp protease ATP 96.2 0.0052 1.1E-07 59.9 4.2 39 74-112 534-578 (821)
407 cd03116 MobB Molybdenum is an 96.2 0.0054 1.2E-07 48.5 3.5 25 79-103 2-26 (159)
408 PF03308 ArgK: ArgK protein; 96.2 0.0047 1E-07 53.1 3.4 27 76-102 27-53 (266)
409 COG5192 BMS1 GTP-binding prote 96.2 0.005 1.1E-07 58.3 3.8 40 63-102 54-93 (1077)
410 PRK04296 thymidine kinase; Pro 96.2 0.0048 1E-07 49.7 3.3 25 78-102 2-26 (190)
411 cd03262 ABC_HisP_GlnQ_permease 96.2 0.0045 9.8E-08 49.7 3.1 35 68-102 16-50 (213)
412 TIGR00073 hypB hydrogenase acc 96.2 0.0054 1.2E-07 49.7 3.5 27 77-103 21-47 (207)
413 cd00820 PEPCK_HprK Phosphoenol 96.2 0.0053 1.1E-07 45.9 3.2 24 76-99 13-36 (107)
414 cd03263 ABC_subfamily_A The AB 96.1 0.0045 9.7E-08 50.1 3.0 35 68-102 18-52 (220)
415 TIGR02236 recomb_radA DNA repa 96.1 0.0063 1.4E-07 52.3 4.1 38 74-111 91-139 (310)
416 cd03224 ABC_TM1139_LivF_branch 96.1 0.004 8.7E-08 50.4 2.7 35 68-102 16-50 (222)
417 KOG0736 Peroxisome assembly fa 96.1 0.0048 1E-07 59.9 3.5 44 76-119 703-748 (953)
418 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.1 0.0049 1.1E-07 49.8 3.2 35 68-102 20-54 (218)
419 PRK14088 dnaA chromosomal repl 96.1 0.0038 8.2E-08 56.8 2.8 36 80-115 132-174 (440)
420 COG1126 GlnQ ABC-type polar am 96.1 0.0049 1.1E-07 52.0 3.2 33 67-99 17-49 (240)
421 TIGR03608 L_ocin_972_ABC putat 96.1 0.0042 9.1E-08 49.7 2.7 35 68-102 14-48 (206)
422 cd03301 ABC_MalK_N The N-termi 96.1 0.0045 9.8E-08 49.8 2.9 31 72-102 20-50 (213)
423 smart00178 SAR Sar1p-like memb 96.1 0.0053 1.1E-07 48.5 3.2 26 75-100 14-39 (184)
424 PRK10865 protein disaggregatio 96.1 0.0057 1.2E-07 60.1 4.1 40 75-114 594-639 (857)
425 cd01864 Rab19 Rab19 subfamily. 96.1 0.0052 1.1E-07 46.9 3.1 24 77-100 2-25 (165)
426 TIGR00960 3a0501s02 Type II (G 96.1 0.004 8.7E-08 50.3 2.6 35 68-102 19-53 (216)
427 cd01863 Rab18 Rab18 subfamily. 96.1 0.0049 1.1E-07 46.5 2.9 23 79-101 1-23 (161)
428 TIGR02315 ABC_phnC phosphonate 96.1 0.005 1.1E-07 50.6 3.1 35 68-102 18-52 (243)
429 PF00437 T2SE: Type II/IV secr 96.1 0.0054 1.2E-07 51.4 3.4 35 77-111 126-163 (270)
430 cd03219 ABC_Mj1267_LivG_branch 96.1 0.0046 1E-07 50.6 2.9 32 71-102 19-50 (236)
431 PF00025 Arf: ADP-ribosylation 96.1 0.0051 1.1E-07 48.5 3.0 25 76-100 12-36 (175)
432 cd03258 ABC_MetN_methionine_tr 96.1 0.0048 1E-07 50.4 3.0 35 68-102 21-55 (233)
433 cd04154 Arl2 Arl2 subfamily. 96.1 0.0057 1.2E-07 47.3 3.2 25 77-101 13-37 (173)
434 PRK09361 radB DNA repair and r 96.1 0.0078 1.7E-07 49.0 4.2 36 75-110 20-60 (225)
435 TIGR02012 tigrfam_recA protein 96.1 0.013 2.9E-07 51.5 5.9 52 63-114 38-96 (321)
436 TIGR02673 FtsE cell division A 96.1 0.005 1.1E-07 49.6 3.0 31 72-102 22-52 (214)
437 cd03225 ABC_cobalt_CbiO_domain 96.1 0.005 1.1E-07 49.5 2.9 34 69-102 18-51 (211)
438 PRK13833 conjugal transfer pro 96.1 0.0065 1.4E-07 53.4 3.9 35 77-111 143-182 (323)
439 cd03259 ABC_Carb_Solutes_like 96.1 0.0053 1.2E-07 49.5 3.1 35 68-102 16-50 (213)
440 PRK08727 hypothetical protein; 96.1 0.0052 1.1E-07 51.0 3.1 33 81-113 44-81 (233)
441 cd01870 RhoA_like RhoA-like su 96.1 0.0051 1.1E-07 47.2 2.8 23 79-101 2-24 (175)
442 COG0542 clpA ATP-binding subun 96.0 0.0074 1.6E-07 58.7 4.5 47 70-116 512-564 (786)
443 cd01868 Rab11_like Rab11-like. 96.0 0.0055 1.2E-07 46.6 2.9 23 79-101 4-26 (165)
444 cd04127 Rab27A Rab27a subfamil 96.0 0.0055 1.2E-07 47.3 3.0 24 77-100 3-26 (180)
445 cd03256 ABC_PhnC_transporter A 96.0 0.0052 1.1E-07 50.3 2.9 33 70-102 19-51 (241)
446 cd03269 ABC_putative_ATPase Th 96.0 0.0058 1.3E-07 49.2 3.2 31 72-102 20-50 (210)
447 PF02367 UPF0079: Uncharacteri 96.0 0.0078 1.7E-07 46.0 3.7 30 76-105 13-42 (123)
448 cd04135 Tc10 TC10 subfamily. 96.0 0.0055 1.2E-07 47.0 2.9 23 79-101 1-23 (174)
449 TIGR01425 SRP54_euk signal rec 96.0 0.0061 1.3E-07 55.6 3.7 34 77-110 99-137 (429)
450 cd04159 Arl10_like Arl10-like 96.0 0.0047 1E-07 45.6 2.4 21 81-101 2-22 (159)
451 cd04101 RabL4 RabL4 (Rab-like4 96.0 0.0052 1.1E-07 46.6 2.7 22 79-100 1-22 (164)
452 KOG3327 Thymidylate kinase/ade 96.0 0.028 6E-07 46.4 7.1 85 76-167 3-98 (208)
453 PRK09302 circadian clock prote 96.0 0.0096 2.1E-07 54.7 5.0 50 64-113 16-72 (509)
454 TIGR03878 thermo_KaiC_2 KaiC d 96.0 0.0065 1.4E-07 51.3 3.6 37 74-110 32-73 (259)
455 PF04665 Pox_A32: Poxvirus A32 96.0 0.0063 1.4E-07 51.6 3.5 27 76-102 11-37 (241)
456 cd00983 recA RecA is a bacter 96.0 0.013 2.9E-07 51.6 5.6 51 63-113 38-95 (325)
457 PHA02624 large T antigen; Prov 96.0 0.0076 1.6E-07 57.3 4.3 35 76-110 429-463 (647)
458 COG1122 CbiO ABC-type cobalt t 96.0 0.0046 9.9E-08 52.0 2.6 36 66-101 18-53 (235)
459 PF00071 Ras: Ras family; Int 96.0 0.0058 1.3E-07 46.2 3.0 22 80-101 1-22 (162)
460 cd03218 ABC_YhbG The ABC trans 96.0 0.0059 1.3E-07 49.8 3.2 34 69-102 17-50 (232)
461 cd01122 GP4d_helicase GP4d_hel 96.0 0.0072 1.6E-07 50.4 3.7 52 60-111 12-69 (271)
462 PRK11264 putative amino-acid A 96.0 0.0058 1.3E-07 50.5 3.1 35 68-102 19-53 (250)
463 cd03257 ABC_NikE_OppD_transpor 96.0 0.0058 1.3E-07 49.6 3.1 35 68-102 21-55 (228)
464 cd03261 ABC_Org_Solvent_Resist 96.0 0.0049 1.1E-07 50.5 2.7 34 69-102 17-50 (235)
465 TIGR03345 VI_ClpV1 type VI sec 96.0 0.0081 1.7E-07 59.0 4.6 25 78-102 208-232 (852)
466 cd04114 Rab30 Rab30 subfamily. 96.0 0.0077 1.7E-07 45.8 3.6 24 77-100 6-29 (169)
467 TIGR00176 mobB molybdopterin-g 96.0 0.0057 1.2E-07 48.0 2.9 22 81-102 2-23 (155)
468 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 96.0 0.0063 1.4E-07 46.4 3.1 22 79-100 3-24 (166)
469 cd01865 Rab3 Rab3 subfamily. 96.0 0.0058 1.3E-07 46.8 2.9 23 79-101 2-24 (165)
470 COG1100 GTPase SAR1 and relate 96.0 0.0055 1.2E-07 48.9 2.8 24 79-102 6-29 (219)
471 TIGR02211 LolD_lipo_ex lipopro 96.0 0.0062 1.4E-07 49.3 3.2 35 68-102 21-55 (221)
472 cd01861 Rab6 Rab6 subfamily. 96.0 0.0057 1.2E-07 46.1 2.8 21 80-100 2-22 (161)
473 PHA03132 thymidine kinase; Pro 96.0 0.075 1.6E-06 50.3 10.7 58 77-134 256-313 (580)
474 COG3911 Predicted ATPase [Gene 96.0 0.0066 1.4E-07 48.7 3.2 42 77-118 8-50 (183)
475 COG0378 HypB Ni2+-binding GTPa 96.0 0.0067 1.4E-07 50.1 3.3 36 79-115 14-53 (202)
476 TIGR03410 urea_trans_UrtE urea 96.0 0.0055 1.2E-07 50.0 2.8 35 68-102 16-50 (230)
477 PRK13541 cytochrome c biogenes 96.0 0.0065 1.4E-07 48.5 3.2 28 75-102 23-50 (195)
478 TIGR01978 sufC FeS assembly AT 96.0 0.0061 1.3E-07 50.0 3.1 32 70-101 18-49 (243)
479 cd03229 ABC_Class3 This class 96.0 0.0068 1.5E-07 47.8 3.2 31 72-102 20-50 (178)
480 PRK10865 protein disaggregatio 96.0 0.0064 1.4E-07 59.7 3.6 24 79-102 200-223 (857)
481 PRK10247 putative ABC transpor 95.9 0.0059 1.3E-07 50.0 2.9 34 68-101 23-56 (225)
482 cd03260 ABC_PstB_phosphate_tra 95.9 0.0068 1.5E-07 49.3 3.2 33 70-102 18-50 (227)
483 cd03247 ABCC_cytochrome_bd The 95.9 0.007 1.5E-07 47.7 3.2 31 72-102 22-52 (178)
484 COG1124 DppF ABC-type dipeptid 95.9 0.006 1.3E-07 51.9 2.9 35 66-100 21-55 (252)
485 cd01878 HflX HflX subfamily. 95.9 0.0058 1.2E-07 48.6 2.7 24 78-101 41-64 (204)
486 cd03226 ABC_cobalt_CbiO_domain 95.9 0.0067 1.5E-07 48.7 3.1 31 72-102 20-50 (205)
487 cd03235 ABC_Metallic_Cations A 95.9 0.0059 1.3E-07 49.2 2.7 33 70-102 17-49 (213)
488 PRK11629 lolD lipoprotein tran 95.9 0.0055 1.2E-07 50.2 2.6 35 68-102 25-59 (233)
489 PRK14247 phosphate ABC transpo 95.9 0.0066 1.4E-07 50.2 3.0 35 68-102 19-53 (250)
490 cd03238 ABC_UvrA The excision 95.9 0.0062 1.3E-07 48.9 2.7 35 65-99 8-42 (176)
491 cd03293 ABC_NrtD_SsuB_transpor 95.9 0.0057 1.2E-07 49.7 2.6 35 68-102 20-54 (220)
492 TIGR03864 PQQ_ABC_ATP ABC tran 95.9 0.0072 1.6E-07 49.7 3.2 33 70-102 19-51 (236)
493 cd04116 Rab9 Rab9 subfamily. 95.9 0.007 1.5E-07 46.3 2.9 24 77-100 4-27 (170)
494 cd04156 ARLTS1 ARLTS1 subfamil 95.9 0.0055 1.2E-07 46.3 2.3 22 80-101 1-22 (160)
495 TIGR00416 sms DNA repair prote 95.9 0.006 1.3E-07 55.8 3.0 49 65-113 80-134 (454)
496 cd03296 ABC_CysA_sulfate_impor 95.9 0.0072 1.6E-07 49.8 3.2 31 72-102 22-52 (239)
497 PRK07994 DNA polymerase III su 95.9 0.0067 1.5E-07 58.0 3.4 29 77-105 37-65 (647)
498 cd03230 ABC_DR_subfamily_A Thi 95.9 0.0063 1.4E-07 47.8 2.7 35 68-102 16-50 (173)
499 PTZ00035 Rad51 protein; Provis 95.9 0.03 6.4E-07 49.4 7.2 38 63-100 102-140 (337)
500 PRK00149 dnaA chromosomal repl 95.9 0.0052 1.1E-07 55.7 2.5 35 80-114 150-191 (450)
No 1
>PLN02674 adenylate kinase
Probab=99.94 E-value=9e-27 Score=196.04 Aligned_cols=98 Identities=23% Similarity=0.486 Sum_probs=93.1
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~ 156 (177)
..++|+|+|||||||+|+|+.||++||++|||+|+++|++++.++++|+.+++++++|+.|||+++.+++.++|.+.++
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~- 108 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC- 108 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCc-
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred CcceEEEeCCCCCHHHHHhc
Q 030464 157 GEIGFILDGLPRSRIQATIS 176 (177)
Q Consensus 157 ~~~G~ILDGfPrt~~QAe~L 176 (177)
.+||||||||||..||+.|
T Consensus 109 -~~g~ilDGfPRt~~Qa~~l 127 (244)
T PLN02674 109 -QKGFILDGFPRTVVQAQKL 127 (244)
T ss_pred -CCcEEEeCCCCCHHHHHHH
Confidence 5899999999999999965
No 2
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=99.94 E-value=8.4e-27 Score=180.38 Aligned_cols=92 Identities=35% Similarity=0.565 Sum_probs=85.2
Q ss_pred EEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCcceEE
Q 030464 83 FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIGFI 162 (177)
Q Consensus 83 IiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~~G~I 162 (177)
|+|||||||+|+|++||++||++||++++++|+++..++++|+++++++.+|+.||++++.++++++|.+.. ..+|||
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~--~~~g~i 78 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPP--CNRGFI 78 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGG--TTTEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhc--ccceee
Confidence 689999999999999999999999999999999999999999999999999999999999999999999883 479999
Q ss_pred EeCCCCCHHHHHhc
Q 030464 163 LDGLPRSRIQATIS 176 (177)
Q Consensus 163 LDGfPrt~~QAe~L 176 (177)
|||||||..||+.|
T Consensus 79 ldGfPrt~~Qa~~l 92 (151)
T PF00406_consen 79 LDGFPRTLEQAEAL 92 (151)
T ss_dssp EESB-SSHHHHHHH
T ss_pred eeeccccHHHHHHH
Confidence 99999999999875
No 3
>PLN02459 probable adenylate kinase
Probab=99.94 E-value=1.7e-26 Score=195.92 Aligned_cols=100 Identities=49% Similarity=0.821 Sum_probs=93.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~ 156 (177)
++++|+|+|||||||+|+|+.||+.+|++||++++++|+++..++++|+.++.++.+|.+|||+++.++|+++|.+....
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~~ 107 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEE 107 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhccccc
Confidence 55789999999999999999999999999999999999999999999999999999999999999999999999875211
Q ss_pred CcceEEEeCCCCCHHHHHhc
Q 030464 157 GEIGFILDGLPRSRIQATIS 176 (177)
Q Consensus 157 ~~~G~ILDGfPrt~~QAe~L 176 (177)
..+||||||||||..||+.|
T Consensus 108 ~~~g~iLDGFPRt~~Qa~~L 127 (261)
T PLN02459 108 GESGFILDGFPRTVRQAEIL 127 (261)
T ss_pred CCceEEEeCCCCCHHHHHHH
Confidence 46899999999999999986
No 4
>PRK14529 adenylate kinase; Provisional
Probab=99.93 E-value=1e-25 Score=187.32 Aligned_cols=95 Identities=23% Similarity=0.462 Sum_probs=90.8
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCc
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~ 158 (177)
++|+|+|+|||||||+|+.|++.|+++|+|+++++|+++...+++++.+++++.+|..+|++++.+++.++|.+.+ .
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~---~ 77 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDG---K 77 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccC---C
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999998875 5
Q ss_pred ceEEEeCCCCCHHHHHhc
Q 030464 159 IGFILDGLPRSRIQATIS 176 (177)
Q Consensus 159 ~G~ILDGfPrt~~QAe~L 176 (177)
+||||||||||.+||+.|
T Consensus 78 ~g~iLDGfPRt~~Qa~~l 95 (223)
T PRK14529 78 NGWLLDGFPRNKVQAEKL 95 (223)
T ss_pred CcEEEeCCCCCHHHHHHH
Confidence 899999999999999975
No 5
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=99.92 E-value=4.8e-25 Score=178.16 Aligned_cols=100 Identities=20% Similarity=0.340 Sum_probs=93.0
Q ss_pred ccCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCC-CCchHHHHHHHHHcCCcchHHHHHHHHHHHHHc
Q 030464 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP-RSSLHKQIANAVNRGEVVSEDIIFGLLSKRLED 152 (177)
Q Consensus 74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~-~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~ 152 (177)
.+.++++|+|+|+|||||.|+|.+++++||+.|+|+|||||++++. .++.|+.++++|++|..||.+++..||++.|.+
T Consensus 4 ~~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~ 83 (195)
T KOG3079|consen 4 KLDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRS 83 (195)
T ss_pred cccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHh
Confidence 3467889999999999999999999999999999999999999988 899999999999999999999999999999998
Q ss_pred cCCCCcceEEEeCCCCCHHHHHh
Q 030464 153 GYYRGEIGFILDGLPRSRIQATI 175 (177)
Q Consensus 153 ~~~~~~~G~ILDGfPrt~~QAe~ 175 (177)
.. ..+||+||||||+.+|++.
T Consensus 84 ~~--~~~~fLIDGyPR~~~q~~~ 104 (195)
T KOG3079|consen 84 SG--DSNGFLIDGYPRNVDQLVE 104 (195)
T ss_pred cC--CCCeEEecCCCCChHHHHH
Confidence 75 3467999999999999875
No 6
>PTZ00088 adenylate kinase 1; Provisional
Probab=99.92 E-value=6e-25 Score=183.20 Aligned_cols=99 Identities=26% Similarity=0.521 Sum_probs=92.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHc--c
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLED--G 153 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~--~ 153 (177)
..+++|+|+|||||||||+|+.||++||++||++|+++|+++..++++++.+++++++|..+||+++.+++.+++.+ .
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~ 83 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTD 83 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhcc
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999987 4
Q ss_pred CCCCcceEEEeCCCCCHHHHHhc
Q 030464 154 YYRGEIGFILDGLPRSRIQATIS 176 (177)
Q Consensus 154 ~~~~~~G~ILDGfPrt~~QAe~L 176 (177)
. ...||||||||||..||+.|
T Consensus 84 ~--~~~g~iLDGfPRt~~Qa~~l 104 (229)
T PTZ00088 84 D--CFKGFILDGFPRNLKQCKEL 104 (229)
T ss_pred c--cCceEEEecCCCCHHHHHHH
Confidence 3 36899999999999999875
No 7
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.92 E-value=1.1e-24 Score=175.52 Aligned_cols=96 Identities=33% Similarity=0.629 Sum_probs=91.7
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCc
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~ 158 (177)
++|+|+|+|||||||+|++|+++++++|+|.++++|..+...+++++.++.+|++|+.||++++..++++++.+.+|.
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~-- 78 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCK-- 78 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhccc--
Confidence 579999999999999999999999999999999999999999999999999999999999999999999999998863
Q ss_pred ceEEEeCCCCCHHHHHhc
Q 030464 159 IGFILDGLPRSRIQATIS 176 (177)
Q Consensus 159 ~G~ILDGfPrt~~QAe~L 176 (177)
.|||+|||||+..||+.|
T Consensus 79 ~~~I~dg~PR~~~qa~~l 96 (178)
T COG0563 79 AGFILDGFPRTLCQARAL 96 (178)
T ss_pred CeEEEeCCCCcHHHHHHH
Confidence 399999999999999875
No 8
>PRK13808 adenylate kinase; Provisional
Probab=99.91 E-value=1.3e-24 Score=189.95 Aligned_cols=96 Identities=25% Similarity=0.465 Sum_probs=91.6
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCc
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~ 158 (177)
++|+|+|||||||||+|+.|++.||++||+++||||.++...++++..+.++|.+|.++||+++.+++.++|.+.++ .
T Consensus 1 mrIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~--~ 78 (333)
T PRK13808 1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDA--A 78 (333)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccc--c
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999998874 6
Q ss_pred ceEEEeCCCCCHHHHHhc
Q 030464 159 IGFILDGLPRSRIQATIS 176 (177)
Q Consensus 159 ~G~ILDGfPrt~~QAe~L 176 (177)
.||||||||||.+||+.|
T Consensus 79 ~G~ILDGFPRt~~QA~~L 96 (333)
T PRK13808 79 NGFILDGFPRTVPQAEAL 96 (333)
T ss_pred CCEEEeCCCCCHHHHHHH
Confidence 899999999999999865
No 9
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=99.91 E-value=2.6e-24 Score=175.19 Aligned_cols=96 Identities=29% Similarity=0.521 Sum_probs=90.0
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCcc
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEI 159 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~~ 159 (177)
+|+|+|+|||||||+|+.||+++|++||++++++|+++...+++++.++.++.+|..+|++++.+++.++|.+..+ ...
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~-~~~ 79 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQD-NEN 79 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcc-cCC
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999988543 367
Q ss_pred eEEEeCCCCCHHHHHhc
Q 030464 160 GFILDGLPRSRIQATIS 176 (177)
Q Consensus 160 G~ILDGfPrt~~QAe~L 176 (177)
||||||||||..||+.|
T Consensus 80 ~~ilDGfPrt~~Qa~~l 96 (210)
T TIGR01351 80 GFILDGFPRTLSQAEAL 96 (210)
T ss_pred cEEEeCCCCCHHHHHHH
Confidence 99999999999999876
No 10
>PRK14526 adenylate kinase; Provisional
Probab=99.91 E-value=4.6e-24 Score=175.78 Aligned_cols=96 Identities=28% Similarity=0.463 Sum_probs=90.9
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCc
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~ 158 (177)
++|+|+|+|||||||+|+.|++.++++|+++|+++|+++...+++++.+++++++|..+|++++.+++.++|....+ .
T Consensus 1 m~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~--~ 78 (211)
T PRK14526 1 MKLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKN--N 78 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccc--c
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999998763 6
Q ss_pred ceEEEeCCCCCHHHHHhc
Q 030464 159 IGFILDGLPRSRIQATIS 176 (177)
Q Consensus 159 ~G~ILDGfPrt~~QAe~L 176 (177)
.||||||||||..||+.|
T Consensus 79 ~g~ilDGfPR~~~Qa~~l 96 (211)
T PRK14526 79 DNFILDGFPRNINQAKAL 96 (211)
T ss_pred CcEEEECCCCCHHHHHHH
Confidence 899999999999999876
No 11
>PRK14532 adenylate kinase; Provisional
Probab=99.91 E-value=5.1e-24 Score=169.76 Aligned_cols=96 Identities=28% Similarity=0.472 Sum_probs=90.0
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCc
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~ 158 (177)
++|+|+|+|||||||+|++||+++|++||++++++|+++...+++++.+++++..|+.+|++++.+++.+++....+ .
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~ 78 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEA--A 78 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCc--c
Confidence 47999999999999999999999999999999999999988899999999999999999999999999999987763 6
Q ss_pred ceEEEeCCCCCHHHHHhc
Q 030464 159 IGFILDGLPRSRIQATIS 176 (177)
Q Consensus 159 ~G~ILDGfPrt~~QAe~L 176 (177)
.||||||||||..|++.+
T Consensus 79 ~g~vldg~pr~~~q~~~~ 96 (188)
T PRK14532 79 GGAIFDGFPRTVAQAEAL 96 (188)
T ss_pred CcEEEeCCCCCHHHHHHH
Confidence 899999999999999864
No 12
>PRK14531 adenylate kinase; Provisional
Probab=99.91 E-value=6.7e-24 Score=169.66 Aligned_cols=96 Identities=27% Similarity=0.466 Sum_probs=89.2
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCC
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRG 157 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~ 157 (177)
+.+|+|+|+|||||||+|+.||+++|++||++++++|+++...+++++.++.++.+|..+|++++..++.+++.+..
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~--- 78 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALN--- 78 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcc---
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999997753
Q ss_pred cceEEEeCCCCCHHHHHhc
Q 030464 158 EIGFILDGLPRSRIQATIS 176 (177)
Q Consensus 158 ~~G~ILDGfPrt~~QAe~L 176 (177)
..||||||||||..|++.+
T Consensus 79 ~~g~ilDGfpr~~~q~~~~ 97 (183)
T PRK14531 79 SGGWLLDGFPRTVAQAEAL 97 (183)
T ss_pred CCcEEEeCCCCCHHHHHHH
Confidence 5799999999999999864
No 13
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.90 E-value=1.7e-23 Score=171.03 Aligned_cols=96 Identities=29% Similarity=0.542 Sum_probs=90.6
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCc
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~ 158 (177)
++|+|+|+|||||||+|+.||+.+|++|+++++++++++...++.++.+++++.+|..+|++++.+++.++|.+.++ .
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~--~ 78 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDC--K 78 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCc--c
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999988764 4
Q ss_pred ceEEEeCCCCCHHHHHhc
Q 030464 159 IGFILDGLPRSRIQATIS 176 (177)
Q Consensus 159 ~G~ILDGfPrt~~QAe~L 176 (177)
.||||||||++..||+.|
T Consensus 79 ~g~VlDGfPr~~~qa~~l 96 (215)
T PRK00279 79 NGFLLDGFPRTIPQAEAL 96 (215)
T ss_pred CCEEEecCCCCHHHHHHH
Confidence 599999999999999876
No 14
>PRK14528 adenylate kinase; Provisional
Probab=99.90 E-value=3e-23 Score=166.90 Aligned_cols=96 Identities=27% Similarity=0.559 Sum_probs=90.9
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCc
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~ 158 (177)
++|+|+|+|||||||+|+.|++.+|++|+++++++++++..+++++..++.++..|..+|++++..++.+++.+..+ .
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~--~ 79 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADC--K 79 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCc--c
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999998764 5
Q ss_pred ceEEEeCCCCCHHHHHhc
Q 030464 159 IGFILDGLPRSRIQATIS 176 (177)
Q Consensus 159 ~G~ILDGfPrt~~QAe~L 176 (177)
.||||||||||.+||+.|
T Consensus 80 ~g~viDG~Pr~~~qa~~l 97 (186)
T PRK14528 80 NGFLLDGFPRTVEQADAL 97 (186)
T ss_pred CcEEEeCCCCCHHHHHHH
Confidence 799999999999999875
No 15
>PRK02496 adk adenylate kinase; Provisional
Probab=99.89 E-value=4.3e-23 Score=164.16 Aligned_cols=97 Identities=31% Similarity=0.536 Sum_probs=90.8
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCC
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRG 157 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~ 157 (177)
+++|+|+|+|||||||+|+.|++.+|++|+++++++++++..+++++..++..+.+|..+|++++.+++.+++.+.++
T Consensus 1 ~~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~-- 78 (184)
T PRK02496 1 MTRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDA-- 78 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCc--
Confidence 468999999999999999999999999999999999999988999999999999999999999999999999988764
Q ss_pred cceEEEeCCCCCHHHHHhc
Q 030464 158 EIGFILDGLPRSRIQATIS 176 (177)
Q Consensus 158 ~~G~ILDGfPrt~~QAe~L 176 (177)
..||||||||+|..|++.|
T Consensus 79 ~~g~vldGfPr~~~q~~~l 97 (184)
T PRK02496 79 ANGWILDGFPRKVTQAAFL 97 (184)
T ss_pred cCCEEEeCCCCCHHHHHHH
Confidence 5799999999999998764
No 16
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.89 E-value=9.4e-23 Score=161.17 Aligned_cols=94 Identities=17% Similarity=0.331 Sum_probs=87.0
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCcc
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEI 159 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~~ 159 (177)
.|+|+|+|||||||+|+.||+++|++||++++++|+++...++.++.+++++.+|..+|++++.+++++++.... .+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~---~~ 77 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADG---SK 77 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccC---CC
Confidence 378999999999999999999999999999999999998888899999999999999999999999999888753 57
Q ss_pred eEEEeCCCCCHHHHHhc
Q 030464 160 GFILDGLPRSRIQATIS 176 (177)
Q Consensus 160 G~ILDGfPrt~~QAe~L 176 (177)
||||||||+|..|++.+
T Consensus 78 ~~vlDg~p~~~~q~~~~ 94 (183)
T TIGR01359 78 KFLIDGFPRNEENLEAW 94 (183)
T ss_pred cEEEeCCCCCHHHHHHH
Confidence 99999999999998753
No 17
>PLN02200 adenylate kinase family protein
Probab=99.88 E-value=1.7e-22 Score=168.60 Aligned_cols=106 Identities=19% Similarity=0.377 Sum_probs=93.5
Q ss_pred cCccCccc--CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHH
Q 030464 68 PDTEGRER--RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGL 145 (177)
Q Consensus 68 ~~~~~~~~--~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~L 145 (177)
+++.+..+ ..+++|+|+|+|||||||+|+.|++++|++||++++++|+++...++.+..+.+.+..|+.+|++++.++
T Consensus 31 ~~~~~~~~~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~ 110 (234)
T PLN02200 31 LEERGSSSKEKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKL 110 (234)
T ss_pred cccccCCccCCCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHH
Confidence 33344443 3457899999999999999999999999999999999999999889999999999999999999999999
Q ss_pred HHHHHHccCCCCcceEEEeCCCCCHHHHHhc
Q 030464 146 LSKRLEDGYYRGEIGFILDGLPRSRIQATIS 176 (177)
Q Consensus 146 l~~~L~~~~~~~~~G~ILDGfPrt~~QAe~L 176 (177)
+.+++.... ..||||||||++..|++.+
T Consensus 111 l~~~l~~~~---~~~~ILDG~Prt~~q~~~l 138 (234)
T PLN02200 111 IQKEMESSD---NNKFLIDGFPRTEENRIAF 138 (234)
T ss_pred HHHHHhcCC---CCeEEecCCcccHHHHHHH
Confidence 999998653 4799999999999999764
No 18
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.86 E-value=1.2e-21 Score=155.51 Aligned_cols=95 Identities=32% Similarity=0.541 Sum_probs=88.8
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCcc
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEI 159 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~~ 159 (177)
+|+|+|+|||||||+|+.||+.+|+.||++++++++++...+++++.+++++.+|..+|++++.+++..+|.+.. ...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~--~~~ 78 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPD--CKK 78 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhccc--ccC
Confidence 589999999999999999999999999999999999998888999999999999999999999999999998764 357
Q ss_pred eEEEeCCCCCHHHHHhc
Q 030464 160 GFILDGLPRSRIQATIS 176 (177)
Q Consensus 160 G~ILDGfPrt~~QAe~L 176 (177)
||||||||++..|++.|
T Consensus 79 ~~vldg~Pr~~~q~~~l 95 (194)
T cd01428 79 GFILDGFPRTVDQAEAL 95 (194)
T ss_pred CEEEeCCCCCHHHHHHH
Confidence 99999999999999865
No 19
>PRK14527 adenylate kinase; Provisional
Probab=99.86 E-value=1.7e-21 Score=156.32 Aligned_cols=97 Identities=26% Similarity=0.436 Sum_probs=90.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~ 156 (177)
++..|+|+|+|||||||+|+.|++++|+.|+++++++++++...++++..++..+.+|..+|++++.+++.+++.+.++
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~~- 83 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGMEP- 83 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCC-
Confidence 5678999999999999999999999999999999999999988899999999999999999999999999999988653
Q ss_pred CcceEEEeCCCCCHHHHHhc
Q 030464 157 GEIGFILDGLPRSRIQATIS 176 (177)
Q Consensus 157 ~~~G~ILDGfPrt~~QAe~L 176 (177)
.+|||||||++..|++.+
T Consensus 84 --~~~VlDGfpr~~~q~~~~ 101 (191)
T PRK14527 84 --VRVIFDGFPRTLAQAEAL 101 (191)
T ss_pred --CcEEEcCCCCCHHHHHHH
Confidence 589999999999998754
No 20
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=99.85 E-value=2.1e-21 Score=162.31 Aligned_cols=98 Identities=34% Similarity=0.574 Sum_probs=93.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~ 156 (177)
++++++++|+||+||+|+|.+|++.|++.|++++|++|+++...+++++.++.++++|+.|||++++.++.++|+...
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~-- 91 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPR-- 91 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhccccc--
Confidence 789999999999999999999999999999999999999999999999999999999999999999998888899885
Q ss_pred CcceEEEeCCCCCHHHHHhc
Q 030464 157 GEIGFILDGLPRSRIQATIS 176 (177)
Q Consensus 157 ~~~G~ILDGfPrt~~QAe~L 176 (177)
+..||||||||||.-||+.|
T Consensus 92 ~~~~~ildg~Prt~~qa~~l 111 (235)
T KOG3078|consen 92 CQKGFILDGFPRTVQQAEEL 111 (235)
T ss_pred cccccccCCCCcchHHHHHH
Confidence 47999999999999999874
No 21
>PRK14530 adenylate kinase; Provisional
Probab=99.84 E-value=1.2e-20 Score=154.22 Aligned_cols=94 Identities=22% Similarity=0.377 Sum_probs=81.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccC-----CCCchHHHHHHHHHcCCcchHHHHHHHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS-----PRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLE 151 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~-----~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~ 151 (177)
..++|+|+|+|||||||+|+.||+.+|++||+++++++++.. .....+. .+..+..|..+|++++.+++.+.+.
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~~~l~ 80 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVEEALS 80 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 345899999999999999999999999999999999999872 2344554 6778999999999999999998876
Q ss_pred ccCCCCcceEEEeCCCCCHHHHHhc
Q 030464 152 DGYYRGEIGFILDGLPRSRIQATIS 176 (177)
Q Consensus 152 ~~~~~~~~G~ILDGfPrt~~QAe~L 176 (177)
+ ..||||||||++..|++.|
T Consensus 81 ~-----~~~~IldG~pr~~~q~~~l 100 (215)
T PRK14530 81 D-----ADGFVLDGYPRNLEQAEYL 100 (215)
T ss_pred c-----CCCEEEcCCCCCHHHHHHH
Confidence 5 3599999999999999875
No 22
>PLN02842 nucleotide kinase
Probab=99.82 E-value=3.3e-20 Score=169.60 Aligned_cols=94 Identities=27% Similarity=0.460 Sum_probs=88.5
Q ss_pred EEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCcceE
Q 030464 82 AFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIGF 161 (177)
Q Consensus 82 lIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~~G~ 161 (177)
+|+|+|||||||+|+.|++++++.|+++++++++++..++++|+.+++++.+|+.+|++++..++.+++++..+ ..+||
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~-~~~G~ 79 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDA-KEKGW 79 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccc-cCCcE
Confidence 47999999999999999999999999999999999999999999999999999999999999999999988764 36899
Q ss_pred EEeCCCCCHHHHHhc
Q 030464 162 ILDGLPRSRIQATIS 176 (177)
Q Consensus 162 ILDGfPrt~~QAe~L 176 (177)
||||||||..|++.|
T Consensus 80 ILDGfPRt~~Qa~~L 94 (505)
T PLN02842 80 LLDGYPRSFAQAQSL 94 (505)
T ss_pred EEeCCCCcHHHHHHH
Confidence 999999999999865
No 23
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.81 E-value=2.4e-19 Score=141.39 Aligned_cols=98 Identities=21% Similarity=0.339 Sum_probs=87.1
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCC
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRG 157 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~ 157 (177)
.+.|+|+|+|||||||+|+.|++.+|+.|+++++++++++...++.++.++..+.+|..+|++.+.+.+.+++..... .
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~ 81 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALG-T 81 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccC-c
Confidence 457899999999999999999999999999999999998877778888999999999999999999999888876543 3
Q ss_pred cceEEEeCCCCCHHHHHhc
Q 030464 158 EIGFILDGLPRSRIQATIS 176 (177)
Q Consensus 158 ~~G~ILDGfPrt~~QAe~L 176 (177)
..|||+||||++..|++.+
T Consensus 82 ~~~~i~dg~~~~~~q~~~~ 100 (188)
T TIGR01360 82 SKGFLIDGYPREVKQGEEF 100 (188)
T ss_pred CCeEEEeCCCCCHHHHHHH
Confidence 6799999999999998754
No 24
>PRK08356 hypothetical protein; Provisional
Probab=99.45 E-value=2e-13 Score=110.04 Aligned_cols=92 Identities=22% Similarity=0.243 Sum_probs=68.9
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCC----C---chHHH----HHHHHHcCCcchH----HHH
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPR----S---SLHKQ----IANAVNRGEVVSE----DII 142 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~----s---~lgk~----i~~~l~~G~~Ipd----eli 142 (177)
.+.|+|+|||||||||+|+.|+ ++|+++|++++.++...... . ..+.. ...+++.|+.+++ +++
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~~ 83 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDIL 83 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHHH
Confidence 4679999999999999999996 58999999999665543321 1 22222 2467778888885 777
Q ss_pred HHHHHHHHHccCCCCcceEEEeCCCCCHHHHHhc
Q 030464 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQATIS 176 (177)
Q Consensus 143 ~~Ll~~~L~~~~~~~~~G~ILDGfPrt~~QAe~L 176 (177)
.+++.+++.. + ..|||||| |+..|++.|
T Consensus 84 ~~~~~~~~~~--~---~~ividG~-r~~~q~~~l 111 (195)
T PRK08356 84 IRLAVDKKRN--C---KNIAIDGV-RSRGEVEAI 111 (195)
T ss_pred HHHHHHHhcc--C---CeEEEcCc-CCHHHHHHH
Confidence 7777777732 1 35999999 999998765
No 25
>PRK01184 hypothetical protein; Provisional
Probab=99.39 E-value=2e-12 Score=102.61 Aligned_cols=90 Identities=14% Similarity=0.315 Sum_probs=63.1
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCC-CC-----chHHHHHHHHHcCCcchHHHHHHHHHHHHH
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP-RS-----SLHKQIANAVNRGEVVSEDIIFGLLSKRLE 151 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~-~s-----~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~ 151 (177)
++.|+|+|+|||||||+++ +++++|+++++++|++|+++.. .. .+++.+..... +.. ++.+..++...+.
T Consensus 1 ~~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~--~~~-~~~~~~~~~~~i~ 76 (184)
T PRK01184 1 MKIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRK--ELG-MDAVAKRTVPKIR 76 (184)
T ss_pred CcEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHH--HHC-hHHHHHHHHHHHH
Confidence 3578999999999999987 7899999999999999998632 11 24554444332 222 2344445455555
Q ss_pred ccCCCCcceEEEeCCCCCHHHHHh
Q 030464 152 DGYYRGEIGFILDGLPRSRIQATI 175 (177)
Q Consensus 152 ~~~~~~~~G~ILDGfPrt~~QAe~ 175 (177)
.. +...+|+||+ ++..|.+.
T Consensus 77 ~~---~~~~vvidg~-r~~~e~~~ 96 (184)
T PRK01184 77 EK---GDEVVVIDGV-RGDAEVEY 96 (184)
T ss_pred hc---CCCcEEEeCC-CCHHHHHH
Confidence 42 3578999999 78877754
No 26
>PRK08118 topology modulation protein; Reviewed
Probab=99.35 E-value=2.2e-12 Score=102.43 Aligned_cols=70 Identities=19% Similarity=0.260 Sum_probs=52.9
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCc
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~ 158 (177)
++|+|+|+|||||||+|+.|++.+++++++++++++.. ....++++...+++++.+.+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~----------------~w~~~~~~~~~~~~~~~~~~------ 59 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP----------------NWEGVPKEEQITVQNELVKE------ 59 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc----------------CCcCCCHHHHHHHHHHHhcC------
Confidence 58999999999999999999999999999999987641 12344555555555553332
Q ss_pred ceEEEeC-CCCCH
Q 030464 159 IGFILDG-LPRSR 170 (177)
Q Consensus 159 ~G~ILDG-fPrt~ 170 (177)
.+||||| ++++.
T Consensus 60 ~~wVidG~~~~~~ 72 (167)
T PRK08118 60 DEWIIDGNYGGTM 72 (167)
T ss_pred CCEEEeCCcchHH
Confidence 4799999 55554
No 27
>PRK06217 hypothetical protein; Validated
Probab=99.25 E-value=1.5e-11 Score=98.10 Aligned_cols=76 Identities=13% Similarity=0.207 Sum_probs=54.7
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCC
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRG 157 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~ 157 (177)
+++|+|+|+|||||||+|++|++.+|++|++++++++..- ..+. +...+++....++.+.+..
T Consensus 1 ~~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~--~~~~----------~~~~~~~~~~~~~~~~~~~----- 63 (183)
T PRK06217 1 MMRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPT--DPPF----------TTKRPPEERLRLLLEDLRP----- 63 (183)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccC--CCCc----------cccCCHHHHHHHHHHHHhc-----
Confidence 3689999999999999999999999999999999887531 1111 1123444445555554432
Q ss_pred cceEEEeCCCCCH
Q 030464 158 EIGFILDGLPRSR 170 (177)
Q Consensus 158 ~~G~ILDGfPrt~ 170 (177)
..+|||||+|...
T Consensus 64 ~~~~vi~G~~~~~ 76 (183)
T PRK06217 64 REGWVLSGSALGW 76 (183)
T ss_pred CCCEEEEccHHHH
Confidence 3589999998753
No 28
>PRK03839 putative kinase; Provisional
Probab=99.22 E-value=2.6e-11 Score=96.00 Aligned_cols=38 Identities=16% Similarity=0.300 Sum_probs=35.3
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e 116 (177)
++|+|+|+|||||||+|+.||++++++|+++++++++.
T Consensus 1 m~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~ 38 (180)
T PRK03839 1 MIIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKK 38 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhc
Confidence 36999999999999999999999999999999998763
No 29
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.14 E-value=6.9e-11 Score=87.09 Aligned_cols=35 Identities=31% Similarity=0.457 Sum_probs=32.4
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhh
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVR 114 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr 114 (177)
+|+|.|+|||||||+|+.|++.+|+++++++++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~ 35 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIR 35 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEE
Confidence 58999999999999999999999999999999543
No 30
>PRK07261 topology modulation protein; Provisional
Probab=99.06 E-value=3.9e-10 Score=89.61 Aligned_cols=71 Identities=21% Similarity=0.215 Sum_probs=49.7
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCc
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~ 158 (177)
++|+|+|+|||||||+|+.|++.+++++++.+++..... ....+.+-....+.+.+.+
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~----------------~~~~~~~~~~~~~~~~~~~------ 58 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN----------------WQERDDDDMIADISNFLLK------ 58 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc----------------cccCCHHHHHHHHHHHHhC------
Confidence 479999999999999999999999999999987654210 1122333344444444433
Q ss_pred ceEEEeCCCCCHH
Q 030464 159 IGFILDGLPRSRI 171 (177)
Q Consensus 159 ~G~ILDGfPrt~~ 171 (177)
..|||||...+..
T Consensus 59 ~~wIidg~~~~~~ 71 (171)
T PRK07261 59 HDWIIDGNYSWCL 71 (171)
T ss_pred CCEEEcCcchhhh
Confidence 2499999877644
No 31
>PRK13949 shikimate kinase; Provisional
Probab=99.05 E-value=1.2e-09 Score=86.76 Aligned_cols=86 Identities=16% Similarity=0.245 Sum_probs=60.4
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCc
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~ 158 (177)
.+|+|+|+|||||||+++.||+.++++++++++++++.... .+....+ ..|+....++..+++++ +.. .
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~~--~~~~~~~---~~g~~~fr~~e~~~l~~-l~~-----~ 70 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHK--TVGDIFA---ERGEAVFRELERNMLHE-VAE-----F 70 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHCc--cHHHHHH---HhCHHHHHHHHHHHHHH-HHh-----C
Confidence 47999999999999999999999999999999988765432 2222211 34666666677777666 432 2
Q ss_pred ceEEE-e--CCCCCHHHHHh
Q 030464 159 IGFIL-D--GLPRSRIQATI 175 (177)
Q Consensus 159 ~G~IL-D--GfPrt~~QAe~ 175 (177)
.++|| + |+|.+..+.+.
T Consensus 71 ~~~vis~Ggg~~~~~~~~~~ 90 (169)
T PRK13949 71 EDVVISTGGGAPCFFDNMEL 90 (169)
T ss_pred CCEEEEcCCcccCCHHHHHH
Confidence 35666 3 57777655543
No 32
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.04 E-value=4.8e-10 Score=95.11 Aligned_cols=91 Identities=11% Similarity=0.028 Sum_probs=56.9
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh-CCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCC
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~l-gl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~ 156 (177)
+..|+|+|+|||||||+|+.|++.+ +..+++.++ ++..+......+.. .+..++...-.+++.+.+.+.+..
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~-~r~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~---- 74 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDD-LRQSLFGHGEWGEY--KFTKEKEDLVTKAQEAAALAALKS---- 74 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccH-HHHHhcCCCccccc--ccChHHHHHHHHHHHHHHHHHHHc----
Confidence 3578889999999999999999999 899999866 45444322211110 000001111123344444444443
Q ss_pred CcceEEEeCCCCCHHHHHhc
Q 030464 157 GEIGFILDGLPRSRIQATIS 176 (177)
Q Consensus 157 ~~~G~ILDGfPrt~~QAe~L 176 (177)
..++|||+++.+..|.+.+
T Consensus 75 -g~~vIid~~~~~~~~~~~~ 93 (300)
T PHA02530 75 -GKSVIISDTNLNPERRRKW 93 (300)
T ss_pred -CCeEEEeCCCCCHHHHHHH
Confidence 3689999999998877643
No 33
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.92 E-value=3.7e-09 Score=84.70 Aligned_cols=40 Identities=23% Similarity=0.256 Sum_probs=37.0
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccC
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS 118 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~ 118 (177)
++|.|-|+|||||||+|+.||+.+|++|+|.|.+.|+..+
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~ 40 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMAR 40 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHH
Confidence 5789999999999999999999999999999999998544
No 34
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=98.91 E-value=1.1e-09 Score=86.78 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=38.4
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e 116 (177)
...++|+|+|-||+||||+|++||+.+|++||.+++++++.
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn 45 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKEN 45 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhh
Confidence 56789999999999999999999999999999999999863
No 35
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=98.90 E-value=1.4e-09 Score=88.83 Aligned_cols=43 Identities=14% Similarity=0.166 Sum_probs=39.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP 119 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~ 119 (177)
.+..|+|.|.||+||||+|+.|++.+|+.++..+|++|+.+..
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~ 44 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRP 44 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHH
Confidence 5678999999999999999999999999999999999998764
No 36
>PRK04182 cytidylate kinase; Provisional
Probab=98.89 E-value=4.8e-09 Score=81.77 Aligned_cols=39 Identities=23% Similarity=0.327 Sum_probs=35.9
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhcc
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL 117 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el 117 (177)
++|+|+|+|||||||+|+.||+.+|+++++++++++...
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~ 39 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELA 39 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHH
Confidence 479999999999999999999999999999999888754
No 37
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.85 E-value=1e-08 Score=79.43 Aligned_cols=39 Identities=26% Similarity=0.326 Sum_probs=35.5
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhcc
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL 117 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el 117 (177)
+.|+|.|+|||||||+|+.|++.+|+++++.+++++...
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~ 39 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELA 39 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHH
Confidence 468999999999999999999999999999998887653
No 38
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=98.84 E-value=4.8e-09 Score=85.27 Aligned_cols=53 Identities=19% Similarity=0.271 Sum_probs=47.8
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHH
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV 131 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l 131 (177)
++|.|+|++||||||+|+.|++.+|+++++.+++.++.+..+++.++.+.+.+
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~f 54 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRY 54 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHh
Confidence 47999999999999999999999999999999999999888888877777665
No 39
>PRK08233 hypothetical protein; Provisional
Probab=98.82 E-value=1.2e-08 Score=79.90 Aligned_cols=88 Identities=13% Similarity=0.162 Sum_probs=48.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~ 156 (177)
+++.|+|.|+|||||||+|+.|++.++...+...|..+.... ...+...+..|... +......+.+.+......
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 75 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNC-----PEDICKWIDKGANY-SEWVLTPLIKDIQELIAK 75 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccC-----chhhhhhhhccCCh-hhhhhHHHHHHHHHHHcC
Confidence 467889999999999999999999997443333344432211 11233334444433 333333444444332211
Q ss_pred CcceEEEeCCCCCH
Q 030464 157 GEIGFILDGLPRSR 170 (177)
Q Consensus 157 ~~~G~ILDGfPrt~ 170 (177)
....+|+.++|...
T Consensus 76 ~~~~~vivd~~~~~ 89 (182)
T PRK08233 76 SNVDYIIVDYPFAY 89 (182)
T ss_pred CCceEEEEeeehhh
Confidence 12356665567643
No 40
>PRK13947 shikimate kinase; Provisional
Probab=98.82 E-value=1.4e-08 Score=79.23 Aligned_cols=38 Identities=13% Similarity=0.094 Sum_probs=35.2
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e 116 (177)
++|+|+|+|||||||+|+.||+.+|+++++.+.++++.
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~ 39 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKM 39 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhh
Confidence 47999999999999999999999999999999887765
No 41
>PRK04040 adenylate kinase; Provisional
Probab=98.82 E-value=1.1e-08 Score=82.79 Aligned_cols=40 Identities=10% Similarity=0.053 Sum_probs=36.7
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh--CCCeeeCchhhhhcc
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLL--EVPRISMSSIVRQDL 117 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~l--gl~~Is~~dLlr~el 117 (177)
++.|+|+|.|||||||+++.|++++ ++.+++.++++++..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a 43 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVA 43 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHH
Confidence 5689999999999999999999999 899999999987654
No 42
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.80 E-value=2.4e-08 Score=77.23 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=37.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhcc
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL 117 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el 117 (177)
..++.|+|+|+|||||||+|+.||+.+|+++++.+++++...
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~ 43 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARA 43 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHc
Confidence 356789999999999999999999999999999998887643
No 43
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.79 E-value=4.8e-09 Score=79.12 Aligned_cols=33 Identities=27% Similarity=0.352 Sum_probs=30.5
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCeeeCchh
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI 112 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dL 112 (177)
.|+|.|+|||||||+|+.|++++|+++++.+.+
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i 33 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGI 33 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccC
Confidence 378999999999999999999999999999844
No 44
>PRK00625 shikimate kinase; Provisional
Probab=98.76 E-value=7.9e-09 Score=82.82 Aligned_cols=39 Identities=18% Similarity=0.406 Sum_probs=36.3
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhcc
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL 117 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el 117 (177)
++|+|+|.|||||||+++.||+.+|++++++++++++..
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~ 39 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNY 39 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHh
Confidence 479999999999999999999999999999999998754
No 45
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.73 E-value=2.8e-08 Score=74.88 Aligned_cols=38 Identities=29% Similarity=0.260 Sum_probs=33.3
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhcc
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL 117 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el 117 (177)
.|+|+|+|||||||+|+.|++.++..+|+.+++.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~ 38 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLA 38 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHc
Confidence 37899999999999999999999999999977665443
No 46
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=98.71 E-value=2.2e-08 Score=80.64 Aligned_cols=41 Identities=22% Similarity=0.291 Sum_probs=37.8
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccC
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS 118 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~ 118 (177)
.++|+++|++|+||||+.++||+.++++++++|.++.+...
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g 42 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTG 42 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHC
Confidence 46799999999999999999999999999999999988644
No 47
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=98.70 E-value=1.9e-08 Score=80.16 Aligned_cols=51 Identities=22% Similarity=0.315 Sum_probs=44.5
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHH
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV 131 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l 131 (177)
.|.|+|+|||||||+++.|++ +|+++|++|++.++.+......++.+.+..
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~f 51 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAF 51 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHc
Confidence 378999999999999999998 999999999999998887777666666654
No 48
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=98.66 E-value=2.4e-08 Score=80.74 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=45.9
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHH
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV 131 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l 131 (177)
+.+|.|+|++||||||+++.|++ +|+++|+.|++.++.+...++..+.+.+..
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~f 54 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAF 54 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHh
Confidence 35799999999999999999988 999999999999998887777666666554
No 49
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.65 E-value=8.7e-08 Score=72.98 Aligned_cols=39 Identities=23% Similarity=0.391 Sum_probs=35.4
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccC
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS 118 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~ 118 (177)
+|+|+|+|||||||+|+.|++.+|+++++.+++++....
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~ 39 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAG 39 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcC
Confidence 489999999999999999999999999999988876543
No 50
>PRK13946 shikimate kinase; Provisional
Probab=98.64 E-value=1.8e-07 Score=74.85 Aligned_cols=42 Identities=14% Similarity=0.179 Sum_probs=37.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhcc
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL 117 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el 117 (177)
..+..|+|+|+|||||||+++.||+.+|+++++.+.++.+..
T Consensus 8 ~~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~ 49 (184)
T PRK13946 8 LGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAA 49 (184)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHh
Confidence 356689999999999999999999999999999988766553
No 51
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=98.61 E-value=1.2e-07 Score=78.01 Aligned_cols=51 Identities=22% Similarity=0.334 Sum_probs=43.0
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHH
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIAN 129 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~ 129 (177)
++.|.|+|.|||||||+|+.+++ +|++++++|+++|+.+.++.+....+.+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~ 52 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAE 52 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHH
Confidence 56789999999999999999888 9999999999999888776655444433
No 52
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.57 E-value=2.8e-07 Score=76.70 Aligned_cols=79 Identities=19% Similarity=0.262 Sum_probs=56.8
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchH-HHHHHHHHHHHHccCCCC
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSE-DIIFGLLSKRLEDGYYRG 157 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipd-eli~~Ll~~~L~~~~~~~ 157 (177)
++|.|-||.||||||+|+.||++||+.|++.|.++|.. ....++++-.+.+ +.+.+++.+ +.-. ...
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~----------a~~~l~~~~~~~d~~~~~~l~~~-~~i~-f~~ 72 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAV----------ALAALKHGVDLDDEDALVALAKE-LDIS-FVN 72 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHH----------HHHHHHcCCCCccHHHHHHHHHh-CCce-ecc
Confidence 78999999999999999999999999999999999974 2334556655544 455555542 2211 111
Q ss_pred cceEEEeCCCCC
Q 030464 158 EIGFILDGLPRS 169 (177)
Q Consensus 158 ~~G~ILDGfPrt 169 (177)
...++|+|..-|
T Consensus 73 ~~~v~l~gedvs 84 (222)
T COG0283 73 DDRVFLNGEDVS 84 (222)
T ss_pred cceEEECCchhh
Confidence 256888887654
No 53
>PRK13973 thymidylate kinase; Provisional
Probab=98.56 E-value=3.2e-07 Score=75.13 Aligned_cols=75 Identities=17% Similarity=0.222 Sum_probs=48.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh---CCCeeeC--------chhhhhccCCC--CchHHHHHHHHHcCCcchHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL---EVPRISM--------SSIVRQDLSPR--SSLHKQIANAVNRGEVVSEDIIF 143 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l---gl~~Is~--------~dLlr~el~~~--s~lgk~i~~~l~~G~~Ipdeli~ 143 (177)
+++-|+|-|++||||||+++.|++.+ |+.++.+ ++++|+.+... ..++..+...+-.+ ...+.+.
T Consensus 2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a--~r~~~~~ 79 (213)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAA--ARDDHVE 79 (213)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHH--HHHHHHH
Confidence 46789999999999999999999999 8888877 66666655431 12222222222222 2334555
Q ss_pred HHHHHHHHcc
Q 030464 144 GLLSKRLEDG 153 (177)
Q Consensus 144 ~Ll~~~L~~~ 153 (177)
+++...|.+.
T Consensus 80 ~~i~~~l~~g 89 (213)
T PRK13973 80 EVIRPALARG 89 (213)
T ss_pred HHHHHHHHCC
Confidence 5566666554
No 54
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=98.55 E-value=1.2e-07 Score=77.40 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=46.3
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHc
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNR 133 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~ 133 (177)
+.|.|+|++||||||+++.|++ +|+++|+.+++.++.+..++...+.+.+.+..
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~ 55 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGD 55 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCc
Confidence 4789999999999999999987 89999999999999888877776666666533
No 55
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.53 E-value=1.3e-07 Score=75.51 Aligned_cols=51 Identities=20% Similarity=0.215 Sum_probs=43.5
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHH
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANA 130 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~ 130 (177)
+|+|+|.+||||||+++.|++..|+++|+.+++.++.+....+....+.+.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~ 51 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDH 51 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHH
Confidence 488999999999999999999888999999999999888777665555443
No 56
>PRK13948 shikimate kinase; Provisional
Probab=98.53 E-value=4.3e-07 Score=73.42 Aligned_cols=42 Identities=19% Similarity=0.055 Sum_probs=37.4
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhcc
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL 117 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el 117 (177)
..+-.|+++|.+||||||+++.||+.+|.++|+++.++++..
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~ 49 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVT 49 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHH
Confidence 355789999999999999999999999999999998887653
No 57
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.49 E-value=6.5e-07 Score=68.43 Aligned_cols=34 Identities=18% Similarity=0.222 Sum_probs=31.2
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhh
Q 030464 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVR 114 (177)
Q Consensus 81 IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr 114 (177)
|+|+|+|||||||+|+.|++.++..+++.+++..
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~ 35 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHP 35 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEeCccccc
Confidence 7899999999999999999999999999877654
No 58
>PRK13974 thymidylate kinase; Provisional
Probab=98.48 E-value=4.1e-07 Score=74.45 Aligned_cols=70 Identities=16% Similarity=0.118 Sum_probs=45.1
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC--chhhhhccCCCCchHHHHHHHHH--cCCcchHHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVRQDLSPRSSLHKQIANAVN--RGEVVSEDIIFGLL 146 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~--~dLlr~el~~~s~lgk~i~~~l~--~G~~Ipdeli~~Ll 146 (177)
.+..|+|.|++||||||+++.|++.+.....-. .+.+.......+++|+.+++++. .|...++.....++
T Consensus 2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~ll 75 (212)
T PRK13974 2 KGKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLL 75 (212)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHH
Confidence 467899999999999999999999874221100 01111112346789999999986 33445565544333
No 59
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.47 E-value=5.9e-07 Score=74.36 Aligned_cols=53 Identities=15% Similarity=0.138 Sum_probs=42.8
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHH
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSED 140 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipde 140 (177)
.+.|.|+||+||||||+++.|++++++.+++.|+++|.. ...++.+|..++++
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~----------~~~~l~~~~~~~~~ 54 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAI----------ALAALQNRVDLTSE 54 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHH----------HHHHHHcCCCCCCH
Confidence 367999999999999999999999999999999998863 23445566555543
No 60
>PRK06762 hypothetical protein; Provisional
Probab=98.46 E-value=6.5e-07 Score=69.67 Aligned_cols=38 Identities=24% Similarity=0.254 Sum_probs=30.8
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh--CCCeeeCchhhhhc
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLL--EVPRISMSSIVRQD 116 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~l--gl~~Is~~dLlr~e 116 (177)
+..|+|.|+|||||||+|+.|++.+ ++.+++. |.++..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~-D~~r~~ 41 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQ-DVVRRD 41 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecH-HHHHHH
Confidence 5678899999999999999999998 5667775 445543
No 61
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.45 E-value=1.5e-07 Score=75.12 Aligned_cols=92 Identities=13% Similarity=0.034 Sum_probs=61.3
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh----CCCeeeCchhhhhccCCCCchH----HHHHHHHHcCCcchHHH--------H
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLL----EVPRISMSSIVRQDLSPRSSLH----KQIANAVNRGEVVSEDI--------I 142 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~l----gl~~Is~~dLlr~el~~~s~lg----k~i~~~l~~G~~Ipdel--------i 142 (177)
..|+|+||+||||+|+++.|.+.+ ...+..+..-.|.....+.++. +++.+.+++|+.++... -
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt~ 82 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGTS 82 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCcccC
Confidence 468999999999999999998885 3334344444443322333332 66777888887766432 2
Q ss_pred HHHHHHHHHccCCCCcceEEEeCCCCCHHHHHh
Q 030464 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQATI 175 (177)
Q Consensus 143 ~~Ll~~~L~~~~~~~~~G~ILDGfPrt~~QAe~ 175 (177)
.+.+++.+.+ .+.+|||+.|....|++.
T Consensus 83 ~~~i~~~~~~-----~~~~ild~~~~~~~~l~~ 110 (184)
T smart00072 83 KETIRQVAEQ-----GKHCLLDIDPQGVKQLRK 110 (184)
T ss_pred HHHHHHHHHc-----CCeEEEEECHHHHHHHHH
Confidence 2345555543 468999999998888764
No 62
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.44 E-value=3.1e-07 Score=85.30 Aligned_cols=44 Identities=14% Similarity=0.231 Sum_probs=40.1
Q ss_pred ccCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhcc
Q 030464 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL 117 (177)
Q Consensus 74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el 117 (177)
.|-|-.+|+++|.|||||||+++.||+.+|++++++++++.+..
T Consensus 2 ~~~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~ 45 (542)
T PRK14021 2 KPTRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREI 45 (542)
T ss_pred CCCCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHH
Confidence 35677899999999999999999999999999999999888754
No 63
>PLN02199 shikimate kinase
Probab=98.44 E-value=6.1e-07 Score=78.03 Aligned_cols=69 Identities=17% Similarity=0.228 Sum_probs=49.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKR 149 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~ 149 (177)
++.+|+|+|.+||||||+++.||+.+|+++|+++.++++.... ..+.+.++ ..|+..-.+...+++++-
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~G-~sI~eIf~---~~GE~~FR~~E~e~L~~L 169 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNG-TSVAEIFV---HHGENFFRGKETDALKKL 169 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhcC-CCHHHHHH---HhCHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999986432 22222221 235555555555555553
No 64
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.42 E-value=6.8e-07 Score=74.22 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=36.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQ 115 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~ 115 (177)
++++|.|.|+|||||||+|+.|++++|+++++.++++|.
T Consensus 3 ~~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~ 41 (225)
T PRK00023 3 KAIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRA 41 (225)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHH
Confidence 457899999999999999999999999999999999886
No 65
>PRK06547 hypothetical protein; Provisional
Probab=98.42 E-value=5.5e-07 Score=72.04 Aligned_cols=41 Identities=10% Similarity=0.034 Sum_probs=36.7
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhh
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQ 115 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~ 115 (177)
..+++.|+|.|++||||||+|+.|++.+++++++++++...
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~ 52 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPG 52 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceecc
Confidence 35678899999999999999999999999999999988753
No 66
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.41 E-value=2.1e-07 Score=74.36 Aligned_cols=39 Identities=21% Similarity=0.237 Sum_probs=32.6
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhC--CCeeeCchhhhhcc
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLE--VPRISMSSIVRQDL 117 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lg--l~~Is~~dLlr~el 117 (177)
++|+|+|+||||||++|..+++.++ +.|+..+...+.++
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~ 42 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEM 42 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHH
Confidence 4799999999999999999999987 56777776666554
No 67
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=98.41 E-value=7.1e-07 Score=79.97 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=42.2
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHH
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIAN 129 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~ 129 (177)
++|.|+|++||||||+|+.|++ +|+++|+.+.+.++.++.++.....+.+
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~ 51 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVA 51 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHH
Confidence 5799999999999999999987 8999999999999988876654444443
No 68
>PRK12338 hypothetical protein; Provisional
Probab=98.40 E-value=9.9e-07 Score=77.28 Aligned_cols=44 Identities=14% Similarity=0.163 Sum_probs=39.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCC
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP 119 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~ 119 (177)
++|..|+|.|+|||||||+|+.||+.+|+.++..+|.+|+.+..
T Consensus 2 ~~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~ 45 (319)
T PRK12338 2 RKPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRG 45 (319)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcC
Confidence 46778999999999999999999999999999888999987653
No 69
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.40 E-value=3.5e-07 Score=71.54 Aligned_cols=38 Identities=11% Similarity=0.117 Sum_probs=34.5
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e 116 (177)
.+|+|+|+|||||||+++.||+.+|+++++.+.++...
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~ 40 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQST 40 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHH
Confidence 46899999999999999999999999999998877654
No 70
>PLN02422 dephospho-CoA kinase
Probab=98.39 E-value=5.4e-07 Score=75.68 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=43.5
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHH
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV 131 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l 131 (177)
..|.|+|++||||||+++.|+ ++|+++|+.|++.++.+.+++.....+.+..
T Consensus 2 ~~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~F 53 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAF 53 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHh
Confidence 368999999999999999998 6899999999999998887766555554443
No 71
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=98.39 E-value=2.5e-07 Score=74.79 Aligned_cols=37 Identities=19% Similarity=0.351 Sum_probs=34.5
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e 116 (177)
|+|+|+|.||+||||+|++|+ ++|+.++++.+++.+.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~ 37 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKEN 37 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhc
Confidence 579999999999999999999 9999999999998863
No 72
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.38 E-value=4.9e-07 Score=83.15 Aligned_cols=38 Identities=16% Similarity=0.273 Sum_probs=35.4
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e 116 (177)
|+|+|+|+|||||||+++.||+.+|++++++++++.+.
T Consensus 1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~ 38 (488)
T PRK13951 1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERR 38 (488)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHH
Confidence 47999999999999999999999999999999988764
No 73
>PRK13975 thymidylate kinase; Provisional
Probab=98.37 E-value=2.1e-06 Score=68.33 Aligned_cols=49 Identities=16% Similarity=0.155 Sum_probs=36.0
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcC
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRG 134 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G 134 (177)
++.|+|.|++||||||+++.|+++++..+... ...+.+++.+++.+..+
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~--------~~~~~~g~~ir~~~~~~ 50 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCE--------PTDGKIGKLIREILSGS 50 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeeEC--------CCCChHHHHHHHHHccC
Confidence 36799999999999999999999998543211 12345677777777655
No 74
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.37 E-value=5e-07 Score=71.83 Aligned_cols=40 Identities=13% Similarity=0.131 Sum_probs=35.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e 116 (177)
++.+|+|+|++||||||+++.|++.+|+++++.+..+.+.
T Consensus 3 ~~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~ 42 (172)
T PRK05057 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKR 42 (172)
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHH
Confidence 4567999999999999999999999999999998766554
No 75
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.35 E-value=1.7e-06 Score=67.12 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=30.6
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCeeeCchhh
Q 030464 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIV 113 (177)
Q Consensus 81 IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLl 113 (177)
|+|+|+|||||||+|+.|++.++..+++.+++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~ 33 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLH 33 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCcccc
Confidence 578999999999999999999999999998864
No 76
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=98.35 E-value=7.9e-07 Score=73.28 Aligned_cols=51 Identities=20% Similarity=0.216 Sum_probs=42.1
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIA 128 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~ 128 (177)
-+++|.|+|++||||||+++.|++.+|+++++.+.+.++.+.. ....+.+.
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~-~~~~~~i~ 55 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKK-PSVIKKIA 55 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc-hHHHHHHH
Confidence 4578999999999999999999999999999999998887765 33433333
No 77
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.35 E-value=1.7e-06 Score=82.61 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=35.8
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e 116 (177)
++|.|.|||||||||+|+.||+++|+.|++.|.++|..
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~ 39 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRAC 39 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHH
Confidence 47999999999999999999999999999999999873
No 78
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=98.34 E-value=7.8e-07 Score=75.17 Aligned_cols=52 Identities=17% Similarity=0.244 Sum_probs=44.9
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHH
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANA 130 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~ 130 (177)
++|.|+|..||||||+++.|++.+|+++|+.|.+.++.++++....+.+.+.
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~ 53 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAAR 53 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHH
Confidence 5789999999999999999999899999999999999888777665555443
No 79
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=98.33 E-value=7.6e-07 Score=71.87 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=45.0
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHH
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV 131 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l 131 (177)
+.|.|+|+.||||||+++.|++ +|+++|+++++.++.+.++.+..+.+.+..
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~F 52 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERF 52 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHc
Confidence 4689999999999999999988 999999999999999988887777766654
No 80
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=98.33 E-value=3.4e-06 Score=67.00 Aligned_cols=51 Identities=22% Similarity=0.236 Sum_probs=35.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCC---CeeeCchhhhhccCCCCchHHHHHHHHHc
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV---PRISMSSIVRQDLSPRSSLHKQIANAVNR 133 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl---~~Is~~dLlr~el~~~s~lgk~i~~~l~~ 133 (177)
+++.|+|.|++||||||+++.|++.++. .++-+ .....+++++.+++.+..
T Consensus 2 ~g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~------~~~~~~~~~~~i~~~~~~ 55 (195)
T TIGR00041 2 RGMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFT------REPGGTPIGEKIRELLLN 55 (195)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE------eCCCCChHHHHHHHHHcC
Confidence 3678999999999999999999999853 22211 112235667777776543
No 81
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=98.26 E-value=3.4e-06 Score=70.25 Aligned_cols=35 Identities=23% Similarity=0.408 Sum_probs=27.2
Q ss_pred EEEEcCCCCCchHHHHHHHHHh---C--CCeeeCchhhhhc
Q 030464 81 WAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQD 116 (177)
Q Consensus 81 IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~dLlr~e 116 (177)
|+|+|+|||||||+|+.|++.+ | +.+++. |.++..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~-D~lr~~ 41 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT-DLIRES 41 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc-HHHHHH
Confidence 7899999999999999999987 3 345554 555544
No 82
>PLN02924 thymidylate kinase
Probab=98.25 E-value=6.8e-06 Score=68.22 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=46.5
Q ss_pred cccCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcc
Q 030464 73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVV 137 (177)
Q Consensus 73 ~~~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~I 137 (177)
..+.+++-|+|.|.+||||||+++.|++.++...+.+ ..++. -...+.+|+.+++.+..+..+
T Consensus 11 ~~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v-~~~~e-p~~~~~~g~~ir~~l~~~~~~ 73 (220)
T PLN02924 11 SVESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA-ELWRF-PDRTTSVGQMISAYLSNKSQL 73 (220)
T ss_pred CcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc-eeeeC-CCCCChHHHHHHHHHhCCCCC
Confidence 3346788899999999999999999999997665554 22332 234577888898888766544
No 83
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.24 E-value=1.5e-06 Score=59.32 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.|+|+|+|||||||+++.|++.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 37889999999999999999985
No 84
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=98.24 E-value=1.1e-06 Score=85.75 Aligned_cols=45 Identities=18% Similarity=0.098 Sum_probs=41.0
Q ss_pred CcccCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (177)
Q Consensus 72 ~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e 116 (177)
-|.|+..+.|.|.|||||||||+|+.||+.+|+.|+++|.++|..
T Consensus 28 ~~~~m~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~ 72 (863)
T PRK12269 28 QCRPMGTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAF 72 (863)
T ss_pred eecccCceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence 356667789999999999999999999999999999999999974
No 85
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=98.23 E-value=2.4e-06 Score=69.89 Aligned_cols=50 Identities=8% Similarity=0.077 Sum_probs=40.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQI 127 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i 127 (177)
.+..|.|+|++||||||+++.|++ +|+++++.+.+.++...+.....+.+
T Consensus 4 ~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~ 53 (208)
T PRK14731 4 LPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGI 53 (208)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHH
Confidence 356789999999999999999986 89999999988888766655443333
No 86
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.22 E-value=6.3e-06 Score=66.13 Aligned_cols=53 Identities=13% Similarity=0.115 Sum_probs=40.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSE 139 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipd 139 (177)
.+-.|+|+|+.||||||+++.|++++++.+++-+|+--.+ -.+.|.+|-.+.|
T Consensus 11 ~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~----------NveKM~~GipLnD 63 (191)
T KOG3354|consen 11 FKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPA----------NVEKMTQGIPLND 63 (191)
T ss_pred CceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHH----------HHHHHhcCCCCCc
Confidence 3447899999999999999999999999999988864432 2344555655554
No 87
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.21 E-value=5.5e-06 Score=71.73 Aligned_cols=45 Identities=29% Similarity=0.422 Sum_probs=39.0
Q ss_pred CcccCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (177)
Q Consensus 72 ~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e 116 (177)
...+.++.+|+|+|+|||||||+++.|++.+|+++++++..+.+.
T Consensus 127 ~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~ 171 (309)
T PRK08154 127 GRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIERE 171 (309)
T ss_pred hhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHH
Confidence 335567789999999999999999999999999999998776654
No 88
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.21 E-value=2.2e-06 Score=79.38 Aligned_cols=40 Identities=20% Similarity=0.164 Sum_probs=37.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e 116 (177)
++++|.|.||+||||||+|+.|++++|+.+++.|+++|..
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~ 322 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAV 322 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHH
Confidence 7789999999999999999999999999999999999973
No 89
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.20 E-value=1.1e-06 Score=64.47 Aligned_cols=33 Identities=27% Similarity=0.390 Sum_probs=27.8
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCe--eeCchhh
Q 030464 81 WAFIGSPRAKKHVYAEMLSKLLEVPR--ISMSSIV 113 (177)
Q Consensus 81 IlIiGpPGSGKSTlA~~LAk~lgl~~--Is~~dLl 113 (177)
|+|.||||+|||++++.+|+.++.++ ++.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~ 35 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELI 35 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccc
Confidence 68999999999999999999999765 4444554
No 90
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.17 E-value=1e-05 Score=63.40 Aligned_cols=50 Identities=16% Similarity=0.137 Sum_probs=36.0
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh---CCCeeeCchhhhhccCCCCchHHHHHHHHHcC
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIVRQDLSPRSSLHKQIANAVNRG 134 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~l---gl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G 134 (177)
+.|+|.|++||||||+++.|++.+ |..++.+... ..+..++.+++++..+
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~------~~~~~~~~~~~~~~~~ 53 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREP------GGTPIGEAIRELLLDP 53 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC------CCCchHHHHHHHHhcc
Confidence 358999999999999999999988 6666555431 1234566677766654
No 91
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.17 E-value=7.3e-07 Score=65.27 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=21.2
Q ss_pred EEEEcCCCCCchHHHHHHHHHh
Q 030464 81 WAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 81 IlIiGpPGSGKSTlA~~LAk~l 102 (177)
|+|.|+|||||||+|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998
No 92
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.16 E-value=4.5e-06 Score=79.19 Aligned_cols=40 Identities=15% Similarity=0.100 Sum_probs=36.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e 116 (177)
+.++|.|.||+||||||+|+.||+++|++|++.++++|..
T Consensus 441 ~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~ 480 (661)
T PRK11860 441 RVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLT 480 (661)
T ss_pred CcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHH
Confidence 3568999999999999999999999999999999999873
No 93
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.15 E-value=9.2e-06 Score=68.29 Aligned_cols=27 Identities=33% Similarity=0.570 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.....++|.||||+||||+|+.+|+.+
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999865
No 94
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.13 E-value=8.6e-06 Score=64.87 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=36.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHc
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNR 133 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~ 133 (177)
+++.|+|.|++||||||+++.|++.++..... ..+..+.. .+..++.+++.+..
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~--~~~~~~p~-~~~~~~~~~~~~~~ 55 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRD--VVFTREPG-GTPLGEKLRELLLD 55 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCc--eeEeeCCC-CChHHHHHHHHHhc
Confidence 56789999999999999999999987322110 11111111 35577777777763
No 95
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=98.11 E-value=6.4e-06 Score=67.13 Aligned_cols=49 Identities=16% Similarity=0.216 Sum_probs=41.3
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHH
Q 030464 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANA 130 (177)
Q Consensus 81 IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~ 130 (177)
|.|+|++||||||+++.|++ +|.++|+.+++.+..+..+....+.+.+.
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~ 50 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSL 50 (196)
T ss_pred EEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHH
Confidence 78999999999999998865 79999999999999887777666555543
No 96
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.07 E-value=3.8e-06 Score=66.36 Aligned_cols=37 Identities=24% Similarity=0.339 Sum_probs=29.9
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCC--eeeCchhhh
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP--RISMSSIVR 114 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~--~Is~~dLlr 114 (177)
+..|++.|+|||||||+|+.|++.++.. |++.+++..
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~ 40 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIE 40 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHH
Confidence 4578999999999999999999998654 556665544
No 97
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.06 E-value=1.3e-05 Score=69.86 Aligned_cols=40 Identities=15% Similarity=0.130 Sum_probs=34.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCC-eeeCchhhhhcc
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVP-RISMSSIVRQDL 117 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~-~Is~~dLlr~el 117 (177)
+|+.|+|.|++||||||+|..||+.+|+. +++ .|.+|+.+
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~-~D~~re~~ 131 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRLGIRSVIG-TDSIREVM 131 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEe-chHHHHHH
Confidence 67889999999999999999999999998 455 56677544
No 98
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.04 E-value=1e-05 Score=67.44 Aligned_cols=39 Identities=23% Similarity=0.260 Sum_probs=32.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCC---eeeCchhhh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVP---RISMSSIVR 114 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~---~Is~~dLlr 114 (177)
.+.+.|.|.|++||||||+|+.|++.++.. .|+.++.+.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk 47 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYK 47 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeecccccc
Confidence 355788899999999999999999999865 777777665
No 99
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.02 E-value=1.2e-05 Score=67.22 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
+-|+++|+|||||||+|+.||+.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 568999999999999999999986
No 100
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.02 E-value=3e-05 Score=55.56 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=24.7
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~ 105 (177)
+..++|+||||+||||+++.|+..++..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 4578999999999999999999987654
No 101
>PLN02165 adenylate isopentenyltransferase
Probab=98.02 E-value=6.6e-06 Score=72.53 Aligned_cols=40 Identities=10% Similarity=0.098 Sum_probs=35.7
Q ss_pred cccCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchh
Q 030464 73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI 112 (177)
Q Consensus 73 ~~~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dL 112 (177)
+.+.++..|+|+||+|||||++|..||+.++..+|++|.+
T Consensus 38 ~~~~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 38 EQNCKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred ccCCCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 3445677899999999999999999999999999999876
No 102
>PRK06696 uridine kinase; Validated
Probab=98.02 E-value=6e-06 Score=67.87 Aligned_cols=39 Identities=23% Similarity=0.324 Sum_probs=32.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh---CCC--eeeCchhhh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---EVP--RISMSSIVR 114 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l---gl~--~Is~~dLlr 114 (177)
.++..|.|.|++||||||+|+.|++.+ |.+ ++++++.+.
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 468899999999999999999999998 554 456888764
No 103
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.01 E-value=3e-05 Score=70.44 Aligned_cols=89 Identities=16% Similarity=0.107 Sum_probs=52.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh----C--CCeeeCchhhhhccCCCCchHHHHHHHHHcCCc--chHHHHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL----E--VPRISMSSIVRQDLSPRSSLHKQIANAVNRGEV--VSEDIIFGLLSK 148 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l----g--l~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~--Ipdeli~~Ll~~ 148 (177)
++..|+|+||+||||||++.+||..+ | +.+++ .|..|.. ...+++.+.+.... .+...+. .+.+
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit-~Dt~R~a------A~eQLk~yAe~lgvp~~~~~~~~-~l~~ 293 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYT-TDNYRIA------AIEQLKRYADTMGMPFYPVKDIK-KFKE 293 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEec-ccchhhh------HHHHHHHHHHhcCCCeeehHHHH-HHHH
Confidence 45678899999999999999999765 2 33444 3444432 11233443333221 1111122 3334
Q ss_pred HHHccCCCCcceEEEe--CCC-CCHHHHHhc
Q 030464 149 RLEDGYYRGEIGFILD--GLP-RSRIQATIS 176 (177)
Q Consensus 149 ~L~~~~~~~~~G~ILD--GfP-rt~~QAe~L 176 (177)
.+... ....+||| |++ ++..|++.|
T Consensus 294 ~l~~~---~~D~VLIDTaGr~~rd~~~l~eL 321 (432)
T PRK12724 294 TLARD---GSELILIDTAGYSHRNLEQLERM 321 (432)
T ss_pred HHHhC---CCCEEEEeCCCCCccCHHHHHHH
Confidence 45433 24679999 874 888888765
No 104
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.00 E-value=2.4e-05 Score=57.76 Aligned_cols=84 Identities=15% Similarity=0.164 Sum_probs=45.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh--------CCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcc--hHHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL--------EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVV--SEDIIFGLL 146 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l--------gl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~I--pdeli~~Ll 146 (177)
+.-.++|.|+||+|||++++.+++.+ +...+.+.- -.. .....+...+.+.+.....- ..+-+.+.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~ 79 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNC-PSS--RTPRDFAQEILEALGLPLKSRQTSDELRSLL 79 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEH-HHH--SSHHHHHHHHHHHHT-SSSSTS-HHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEe-CCC--CCHHHHHHHHHHHhCccccccCCHHHHHHHH
Confidence 34568899999999999999999976 444443321 111 12233444555555443322 223333666
Q ss_pred HHHHHccCCCCcceEEEeCC
Q 030464 147 SKRLEDGYYRGEIGFILDGL 166 (177)
Q Consensus 147 ~~~L~~~~~~~~~G~ILDGf 166 (177)
.+.+.+.. ..-+|||++
T Consensus 80 ~~~l~~~~---~~~lviDe~ 96 (131)
T PF13401_consen 80 IDALDRRR---VVLLVIDEA 96 (131)
T ss_dssp HHHHHHCT---EEEEEEETT
T ss_pred HHHHHhcC---CeEEEEeCh
Confidence 67677653 246788876
No 105
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.98 E-value=6.7e-06 Score=64.70 Aligned_cols=42 Identities=21% Similarity=0.167 Sum_probs=32.8
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHHhC-----CCeeeCchhhhhcc
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVRQDL 117 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lg-----l~~Is~~dLlr~el 117 (177)
..++..|+|.|+|||||||+|+.|++.++ +.+++. +-+++.+
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~-d~~r~~~ 50 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDG-DELREIL 50 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEec-HHHHhhc
Confidence 35677899999999999999999999885 556653 4555543
No 106
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.97 E-value=4.3e-06 Score=67.24 Aligned_cols=43 Identities=9% Similarity=0.167 Sum_probs=37.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP 119 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~ 119 (177)
..++|+|+|+||+||||+++++++.+.-.-+.++.++..++..
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~ 46 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVRE 46 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeec
Confidence 5689999999999999999999999877778888888888764
No 107
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.95 E-value=1.9e-05 Score=66.07 Aligned_cols=84 Identities=21% Similarity=0.256 Sum_probs=50.1
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhh-hccCCCC------chHH-----HHHHHHHcCCcchHHHHHHHH
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVR-QDLSPRS------SLHK-----QIANAVNRGEVVSEDIIFGLL 146 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr-~el~~~s------~lgk-----~i~~~l~~G~~Ipdeli~~Ll 146 (177)
..++|.||+|+|||.+|-.||+++|.++|+.+.+.. .++.-.+ ++.. .-...+..|. ++.+-..+.+
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~-i~a~ea~~~L 80 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGI-INAEEAHERL 80 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHHHHHH
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCC-cCHHHHHHHH
Confidence 457899999999999999999999999999987543 2232111 1000 0123355666 4444455666
Q ss_pred HHHHHccCCCCcceEEEeC
Q 030464 147 SKRLEDGYYRGEIGFILDG 165 (177)
Q Consensus 147 ~~~L~~~~~~~~~G~ILDG 165 (177)
..++.+.. .+.|+||+|
T Consensus 81 i~~v~~~~--~~~~~IlEG 97 (233)
T PF01745_consen 81 ISEVNSYS--AHGGLILEG 97 (233)
T ss_dssp HHHHHTTT--TSSEEEEEE
T ss_pred HHHHHhcc--ccCceEEeC
Confidence 67777765 378999998
No 108
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.94 E-value=6.4e-06 Score=67.00 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=32.1
Q ss_pred EEEEcCCCCCchHHHHHHHHHh-CCCeeeCchhhhh
Q 030464 81 WAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQ 115 (177)
Q Consensus 81 IlIiGpPGSGKSTlA~~LAk~l-gl~~Is~~dLlr~ 115 (177)
|.|.|+|||||||+|+.|++.+ ++.+|++++....
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~ 37 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKP 37 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCC
Confidence 7889999999999999999998 7999999998764
No 109
>PF05729 NACHT: NACHT domain
Probab=97.94 E-value=1.9e-05 Score=59.86 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.++|.|+||+||||+++.++..+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 47899999999999999998876
No 110
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.93 E-value=9.2e-06 Score=65.70 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=33.2
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh---CCCeeeCchhhh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIVR 114 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l---gl~~Is~~dLlr 114 (177)
.++..|.|.|++||||||+++.|++.+ .+.+++.++.+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~ 45 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYK 45 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcccc
Confidence 478899999999999999999999998 355678877654
No 111
>CHL00181 cbbX CbbX; Provisional
Probab=97.92 E-value=2.3e-05 Score=67.38 Aligned_cols=27 Identities=33% Similarity=0.573 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
..+..++|.||||+|||++|+.+++.+
T Consensus 57 ~~~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 57 NPGLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 457789999999999999999998865
No 112
>PHA00729 NTP-binding motif containing protein
Probab=97.91 E-value=2.1e-05 Score=65.90 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhC
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLE 103 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lg 103 (177)
.+|+|+|+||+||||+|..|++.++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999875
No 113
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.91 E-value=4e-05 Score=61.89 Aligned_cols=41 Identities=20% Similarity=0.186 Sum_probs=29.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh---CCCeeeCchhhhhcc
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIVRQDL 117 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l---gl~~Is~~dLlr~el 117 (177)
.+|..|++.|+|||||||++..+.+.+ ++.+|+.+++ +..+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~-r~~~ 56 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEF-RQFH 56 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGG-GGGS
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHH-HHhc
Confidence 577778888999999999999999886 6788987654 4443
No 114
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=97.88 E-value=1.4e-05 Score=74.30 Aligned_cols=38 Identities=11% Similarity=0.106 Sum_probs=34.0
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchh
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI 112 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dL 112 (177)
+.++..|++.|+|||||||+|+.+++..|+.+|+.+++
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~l 403 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTL 403 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHH
Confidence 34677889999999999999999999999999999765
No 115
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.87 E-value=4.1e-05 Score=60.80 Aligned_cols=42 Identities=21% Similarity=0.261 Sum_probs=32.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCchhhhhccCC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQDLSP 119 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~dLlr~el~~ 119 (177)
++..|+|+|.|||||||+|+.|.+++ | +.+++ +|.+|..+..
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD-gD~lR~~l~~ 47 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD-GDNLRHGLNA 47 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE-HHHHCTTTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec-CcchhhccCC
Confidence 56789999999999999999999987 3 44555 3677776654
No 116
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=97.84 E-value=7.7e-05 Score=68.52 Aligned_cols=42 Identities=31% Similarity=0.324 Sum_probs=34.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhcc
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL 117 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el 117 (177)
.+|..|+|.|+||+||||+|..||+.+|+.++-..|.+|+.+
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~l 294 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVL 294 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHH
Confidence 368889999999999999999999999998654456666644
No 117
>PLN02840 tRNA dimethylallyltransferase
Probab=97.82 E-value=2.9e-05 Score=70.40 Aligned_cols=39 Identities=26% Similarity=0.158 Sum_probs=34.3
Q ss_pred cccCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCch
Q 030464 73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (177)
Q Consensus 73 ~~~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~d 111 (177)
....+++.|+|.||+||||||+|..|++.++..+|+.+.
T Consensus 16 ~~~~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds 54 (421)
T PLN02840 16 SKTKKEKVIVISGPTGAGKSRLALELAKRLNGEIISADS 54 (421)
T ss_pred ccccCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence 344566789999999999999999999999999999876
No 118
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.81 E-value=1.6e-05 Score=59.95 Aligned_cols=30 Identities=30% Similarity=0.432 Sum_probs=26.1
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~ 109 (177)
.|+|+|+||+|||++++.+|+.++.+++.+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i 30 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRI 30 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEE
Confidence 379999999999999999999998776443
No 119
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.81 E-value=2.2e-05 Score=68.39 Aligned_cols=36 Identities=25% Similarity=0.210 Sum_probs=32.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI 112 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dL 112 (177)
++..|+|+||+|||||++|..||+.++..+||.|++
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~ 38 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSM 38 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence 456789999999999999999999999999999874
No 120
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.80 E-value=2.3e-05 Score=63.60 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=32.3
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHHhC---CCeeeCchhh
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLE---VPRISMSSIV 113 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lg---l~~Is~~dLl 113 (177)
+.++..|.|.|++||||||+++.|+..++ +.+++.++.+
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~ 44 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYY 44 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccc
Confidence 35677899999999999999999998875 5677777654
No 121
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.80 E-value=1.2e-05 Score=62.50 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=23.6
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhh
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQ 115 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~ 115 (177)
+|+|+|+||+||||+++.|++. |++++ .+..|.
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar~ 33 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR-GYPVV--PEYARE 33 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH-T-EEE----TTHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc-CCeEE--eecHHH
Confidence 6999999999999999999998 88877 455544
No 122
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.80 E-value=2.1e-05 Score=61.80 Aligned_cols=36 Identities=31% Similarity=0.354 Sum_probs=29.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhC-----CCeeeCchh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSI 112 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lg-----l~~Is~~dL 112 (177)
++..|+|+|+|||||||+|+.|++.+. +.+++.+.+
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~ 43 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV 43 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence 456899999999999999999999872 566776543
No 123
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.78 E-value=4.2e-05 Score=64.59 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=27.8
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~ 109 (177)
+..|+|.|+||+|||++|+.|++.+|.+++.+
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i 52 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLI 52 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 45688999999999999999999999887644
No 124
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.77 E-value=2.7e-05 Score=70.82 Aligned_cols=37 Identities=24% Similarity=0.260 Sum_probs=33.3
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCch
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~d 111 (177)
...+.+|+|+||||+|||++|+.||+.++++++.++.
T Consensus 44 e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vda 80 (441)
T TIGR00390 44 EVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 80 (441)
T ss_pred ccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeec
Confidence 3456789999999999999999999999999998874
No 125
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.77 E-value=8.4e-05 Score=63.70 Aligned_cols=26 Identities=27% Similarity=0.485 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.+..++|.||||+|||++|+.+++.+
T Consensus 57 ~~~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 35579999999999999998888765
No 126
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.72 E-value=5.5e-05 Score=61.72 Aligned_cols=45 Identities=22% Similarity=0.220 Sum_probs=35.4
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHHh---CCC-eeeCchhhhhccCC
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL---EVP-RISMSSIVRQDLSP 119 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~l---gl~-~Is~~dLlr~el~~ 119 (177)
..++..|+|+|.+||||||+|.+|++++ |+. ++=-||-+|.-+..
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~ 68 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNR 68 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccC
Confidence 4578899999999999999999999986 433 23336888887764
No 127
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=97.72 E-value=6.6e-05 Score=60.80 Aligned_cols=38 Identities=13% Similarity=0.130 Sum_probs=33.9
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh-CCCeeeCchhhhh
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQ 115 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~l-gl~~Is~~dLlr~ 115 (177)
+++++++|-||+||||+++...+.+ ++..++.|+++=+
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle 42 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLE 42 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHH
Confidence 5789999999999999999999988 8888999997654
No 128
>PRK09183 transposase/IS protein; Provisional
Probab=97.72 E-value=0.00015 Score=61.47 Aligned_cols=42 Identities=14% Similarity=0.063 Sum_probs=31.1
Q ss_pred cccCCCeEEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCchhhh
Q 030464 73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVR 114 (177)
Q Consensus 73 ~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~dLlr 114 (177)
.+..++.+++|+||||+|||+++..|+... | +.+++..+++.
T Consensus 97 ~~i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~ 143 (259)
T PRK09183 97 SFIERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLL 143 (259)
T ss_pred CchhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHH
Confidence 345567789999999999999999996543 3 34556666653
No 129
>PRK15453 phosphoribulokinase; Provisional
Probab=97.70 E-value=7.5e-05 Score=64.73 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=31.6
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC-----CCeeeCchhhh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVR 114 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg-----l~~Is~~dLlr 114 (177)
.+++.|.|.|.|||||||+|+.|++.++ ..+++.++..+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 4678899999999999999999998774 45677666544
No 130
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.69 E-value=2.6e-05 Score=61.20 Aligned_cols=32 Identities=16% Similarity=0.089 Sum_probs=26.3
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~ 110 (177)
..|+|+||+||||||+++.|++.+...++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~ 33 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSIS 33 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCcccccccc
Confidence 46899999999999999999998755555543
No 131
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.67 E-value=3e-05 Score=62.08 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=31.4
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCchhhhh
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVRQ 115 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~dLlr~ 115 (177)
.|.|.|+|||||||+|+.|++.+ ++.+|++++..+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~ 41 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVP 41 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccC
Confidence 37899999999999999999986 4679999998874
No 132
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=97.67 E-value=0.00017 Score=67.65 Aligned_cols=42 Identities=29% Similarity=0.292 Sum_probs=34.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCC------CeeeCchhhhhccCC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV------PRISMSSIVRQDLSP 119 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl------~~Is~~dLlr~el~~ 119 (177)
++..|+|+|.|||||||+|+.|++.++. .+++. |.+++.+..
T Consensus 391 ~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~-D~vr~~l~g 438 (568)
T PRK05537 391 QGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDG-DVVRKHLSS 438 (568)
T ss_pred CCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCC-cHHHHhccC
Confidence 5568999999999999999999999985 77775 566766653
No 133
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.66 E-value=4.9e-05 Score=61.96 Aligned_cols=34 Identities=6% Similarity=-0.082 Sum_probs=28.6
Q ss_pred cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
..+..+.|.++..|+|+||+||||||+++.|.+.
T Consensus 3 ~~~~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 3 NPWLFNKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CccccCCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3455667778889999999999999999999764
No 134
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.66 E-value=5.1e-05 Score=69.06 Aligned_cols=36 Identities=25% Similarity=0.264 Sum_probs=32.3
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCch
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~d 111 (177)
..+.+|+|+||||+|||++|+.||+.++++++.++.
T Consensus 48 ~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~ 83 (443)
T PRK05201 48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (443)
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence 346789999999999999999999999999888864
No 135
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.64 E-value=3.8e-05 Score=61.49 Aligned_cols=34 Identities=26% Similarity=0.246 Sum_probs=29.7
Q ss_pred EEEEcCCCCCchHHHHHHHHHh---CCCeeeCchhhh
Q 030464 81 WAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIVR 114 (177)
Q Consensus 81 IlIiGpPGSGKSTlA~~LAk~l---gl~~Is~~dLlr 114 (177)
|.|.|++||||||+++.|+..+ ++.++++++...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~ 38 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYK 38 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccccc
Confidence 7899999999999999999987 477888887664
No 136
>PRK07667 uridine kinase; Provisional
Probab=97.64 E-value=5.3e-05 Score=61.09 Aligned_cols=39 Identities=10% Similarity=0.164 Sum_probs=32.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhC-----CCeeeCchhhhh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVRQ 115 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lg-----l~~Is~~dLlr~ 115 (177)
....|.|.|+|||||||+|+.|++.++ +..+++++.+..
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~ 59 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVE 59 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccch
Confidence 447889999999999999999999763 458999987654
No 137
>PTZ00301 uridine kinase; Provisional
Probab=97.63 E-value=4.1e-05 Score=63.25 Aligned_cols=39 Identities=13% Similarity=0.046 Sum_probs=30.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhC-------CCeeeCchhhhh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE-------VPRISMSSIVRQ 115 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lg-------l~~Is~~dLlr~ 115 (177)
+-+.|.|.|+|||||||+|+.|++.++ +..+++++..+.
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~ 47 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRD 47 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccC
Confidence 346788999999999999999988762 346777776654
No 138
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.63 E-value=3.9e-05 Score=61.88 Aligned_cols=33 Identities=27% Similarity=0.283 Sum_probs=27.7
Q ss_pred ccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 70 TEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 70 ~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
-+...+.++..|+|+|++||||||+++.|++.+
T Consensus 16 ~~~~~~~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 16 REQLHGHKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred HHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 333445688899999999999999999999976
No 139
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.62 E-value=6.3e-05 Score=60.16 Aligned_cols=35 Identities=14% Similarity=0.301 Sum_probs=30.8
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchh
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI 112 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dL 112 (177)
+-.++|+|++||||||+++.|+..++..+++-+++
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~ 37 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDL 37 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCEEECCccc
Confidence 44689999999999999999999999988887654
No 140
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.61 E-value=7.5e-05 Score=54.22 Aligned_cols=32 Identities=19% Similarity=0.300 Sum_probs=26.1
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh---CCCeeeC
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLL---EVPRISM 109 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~l---gl~~Is~ 109 (177)
...++|+|+||+|||++++.+++.+ +..++.+
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~ 53 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYL 53 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEE
Confidence 4568999999999999999999987 5554444
No 141
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.61 E-value=5.1e-05 Score=60.91 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=22.3
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhC
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLLE 103 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~lg 103 (177)
.|.|.|++||||||+|++|++.++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999986
No 142
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.61 E-value=5.3e-05 Score=59.56 Aligned_cols=26 Identities=15% Similarity=0.061 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCC
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEV 104 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl 104 (177)
..|+|+|+|||||||+++.|+..++.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 36899999999999999999998754
No 143
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.61 E-value=4.8e-05 Score=60.71 Aligned_cols=36 Identities=8% Similarity=0.050 Sum_probs=28.7
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhh
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVR 114 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr 114 (177)
..|+|+||+||||||+++.|+..++..++..+..+.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~ 38 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYIT 38 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECC
Confidence 468999999999999999999988766555444433
No 144
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.0001 Score=65.39 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=25.3
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCee
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~I 107 (177)
..|++.||||.|||++|+.||+++.+...
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~ 206 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTN 206 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeec
Confidence 45789999999999999999999877633
No 145
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.59 E-value=5.9e-05 Score=65.27 Aligned_cols=31 Identities=29% Similarity=0.259 Sum_probs=29.8
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCeeeCch
Q 030464 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (177)
Q Consensus 81 IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~d 111 (177)
|+|+||+|||||++|..|++.++..+||+++
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds 32 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDS 32 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEech
Confidence 7899999999999999999999999999987
No 146
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.59 E-value=8.2e-05 Score=57.68 Aligned_cols=36 Identities=25% Similarity=0.272 Sum_probs=27.5
Q ss_pred EEEEcCCCCCchHHHHHHHHHh---CCC--eeeCchhhhhcc
Q 030464 81 WAFIGSPRAKKHVYAEMLSKLL---EVP--RISMSSIVRQDL 117 (177)
Q Consensus 81 IlIiGpPGSGKSTlA~~LAk~l---gl~--~Is~~dLlr~el 117 (177)
|+|.|.|||||||+|+.|++.+ +.. +++ ++-+++.+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~-~d~~r~~l 42 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLD-GDNVRHGL 42 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc-CHHHHHhh
Confidence 7899999999999999999988 644 344 35555433
No 147
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.58 E-value=0.00026 Score=59.93 Aligned_cols=42 Identities=21% Similarity=0.289 Sum_probs=34.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCchhhhhccC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQDLS 118 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~dLlr~el~ 118 (177)
++..++|.|+||+|||++|.+|+..+ | +.++++.+++.+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKA 150 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH
Confidence 67789999999999999999998764 3 457888899887544
No 148
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=97.58 E-value=3.8e-05 Score=59.91 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=29.3
Q ss_pred CCCCchHHHHHHHHHhCCCeeeCchhhhhccC
Q 030464 87 PRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS 118 (177)
Q Consensus 87 PGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~ 118 (177)
|||||||+++.||+.+|++++++++++.+...
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g 32 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTG 32 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHhC
Confidence 79999999999999999999999999877543
No 149
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.58 E-value=0.00017 Score=57.35 Aligned_cols=31 Identities=16% Similarity=0.162 Sum_probs=28.0
Q ss_pred EcCCCCCchHHHHHHHHHhCCCeeeCchhhh
Q 030464 84 IGSPRAKKHVYAEMLSKLLEVPRISMSSIVR 114 (177)
Q Consensus 84 iGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr 114 (177)
+|..||||||+++.||+++|..+|+=++|--
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp 31 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHP 31 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCC
Confidence 5899999999999999999999999877643
No 150
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.58 E-value=8.4e-05 Score=59.64 Aligned_cols=46 Identities=17% Similarity=0.127 Sum_probs=33.3
Q ss_pred CcccCCCeEEEEEcCCCCCchHHHHHHHHH-----hCCCeeeCchhhhhcc
Q 030464 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKL-----LEVPRISMSSIVRQDL 117 (177)
Q Consensus 72 ~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~-----lgl~~Is~~dLlr~el 117 (177)
..+..++..++|.|+||+|||++|..+++. +.+.++++.+|+....
T Consensus 41 ~~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~ 91 (178)
T PF01695_consen 41 LEFIENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK 91 (178)
T ss_dssp H-S-SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred CCCcccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence 344557788999999999999999999864 3456888888887643
No 151
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.58 E-value=6.1e-05 Score=63.40 Aligned_cols=32 Identities=25% Similarity=0.233 Sum_probs=25.2
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~ 109 (177)
...++|.||||+||||+|..||+.++..+..+
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~ 81 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANELGVNFKIT 81 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHHCT--EEEE
T ss_pred cceEEEECCCccchhHHHHHHHhccCCCeEec
Confidence 35799999999999999999999999875443
No 152
>PRK05439 pantothenate kinase; Provisional
Probab=97.57 E-value=6.6e-05 Score=65.65 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=33.0
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC-------CCeeeCchhhh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-------VPRISMSSIVR 114 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg-------l~~Is~~dLlr 114 (177)
.++..|.|.|+|||||||+|+.|++.++ +.+|++++.+.
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~ 129 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLY 129 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccccc
Confidence 5678899999999999999999998653 56899988764
No 153
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.56 E-value=0.00028 Score=64.69 Aligned_cols=34 Identities=24% Similarity=0.272 Sum_probs=29.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~ 110 (177)
.+..++|.||||+|||++|+.||...+++++.+.
T Consensus 87 ~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~ 120 (495)
T TIGR01241 87 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSIS 120 (495)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHcCCCeeecc
Confidence 3456999999999999999999999999887764
No 154
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.53 E-value=9.9e-05 Score=58.96 Aligned_cols=30 Identities=30% Similarity=0.349 Sum_probs=24.3
Q ss_pred EEEEcCCCCCchHHHHHHHHHhC--CCeeeCc
Q 030464 81 WAFIGSPRAKKHVYAEMLSKLLE--VPRISMS 110 (177)
Q Consensus 81 IlIiGpPGSGKSTlA~~LAk~lg--l~~Is~~ 110 (177)
++|+|+||||||++|..++...+ +.++...
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~ 33 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATA 33 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEcc
Confidence 78999999999999999998765 3455444
No 155
>PRK08181 transposase; Validated
Probab=97.52 E-value=7.8e-05 Score=63.83 Aligned_cols=43 Identities=19% Similarity=0.212 Sum_probs=34.1
Q ss_pred ccCCCeEEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCchhhhhc
Q 030464 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQD 116 (177)
Q Consensus 74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~dLlr~e 116 (177)
+..+..+++|+||||+|||++|..++... | +.++++.+++...
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l 149 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL 149 (269)
T ss_pred HHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence 44566789999999999999999998632 3 6678888887754
No 156
>PLN02748 tRNA dimethylallyltransferase
Probab=97.52 E-value=8.1e-05 Score=68.41 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=33.0
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCch
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~d 111 (177)
.++..|+|+||+|||||++|..||+.++..+|+.+.
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Ds 55 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADS 55 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence 456689999999999999999999999999999985
No 157
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.52 E-value=0.00028 Score=60.40 Aligned_cols=35 Identities=34% Similarity=0.256 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCchhh
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIV 113 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~dLl 113 (177)
+-|+|+|.|||||||+|+.|++.+ .+.+++-+++.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~ 41 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG 41 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 468999999999999999998864 44566644433
No 158
>PRK12377 putative replication protein; Provisional
Probab=97.51 E-value=0.00047 Score=58.41 Aligned_cols=37 Identities=19% Similarity=0.397 Sum_probs=30.0
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCchhhhh
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQ 115 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~dLlr~ 115 (177)
..++|.|+||+|||++|..|+..+ | +.++++.+++..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~ 143 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSR 143 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHH
Confidence 468999999999999999999876 3 347777777764
No 159
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.49 E-value=0.00011 Score=58.83 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lg 103 (177)
++..|+|+||+||||||+++.|++.+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 566899999999999999999999875
No 160
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=97.48 E-value=0.00012 Score=64.87 Aligned_cols=35 Identities=31% Similarity=0.401 Sum_probs=29.9
Q ss_pred EEEEcCCCCCchHHHHHHHHHhC------CCeeeCchhhhh
Q 030464 81 WAFIGSPRAKKHVYAEMLSKLLE------VPRISMSSIVRQ 115 (177)
Q Consensus 81 IlIiGpPGSGKSTlA~~LAk~lg------l~~Is~~dLlr~ 115 (177)
++|+|+||+||||+++.|++.+. +.+++++|++..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~ 42 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPE 42 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccc
Confidence 68999999999999999987765 449999998843
No 161
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.47 E-value=7.3e-05 Score=58.88 Aligned_cols=29 Identities=14% Similarity=0.162 Sum_probs=26.4
Q ss_pred EcCCCCCchHHHHHHHHHhCCCeeeCchh
Q 030464 84 IGSPRAKKHVYAEMLSKLLEVPRISMSSI 112 (177)
Q Consensus 84 iGpPGSGKSTlA~~LAk~lgl~~Is~~dL 112 (177)
+|+|||||||+++.|++.+|..+++.+.+
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~ 29 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFL 29 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccC
Confidence 69999999999999999999999997654
No 162
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.00027 Score=66.96 Aligned_cols=33 Identities=27% Similarity=0.324 Sum_probs=29.8
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCch
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~d 111 (177)
--|+|.||||||||.+|+.+|..+|++++++..
T Consensus 224 rGvLlHGPPGCGKT~lA~AiAgel~vPf~~isA 256 (802)
T KOG0733|consen 224 RGVLLHGPPGCGKTSLANAIAGELGVPFLSISA 256 (802)
T ss_pred CceeeeCCCCccHHHHHHHHhhhcCCceEeecc
Confidence 347899999999999999999999999999863
No 163
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=97.46 E-value=0.00036 Score=57.98 Aligned_cols=52 Identities=19% Similarity=0.342 Sum_probs=45.1
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHH
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV 131 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l 131 (177)
..|-++|..||||||+++.+ +.+|+++|+.|.+.|+.++++++.+..+.+..
T Consensus 2 ~iVGLTGgiatGKStVs~~f-~~~G~~vIDaD~vaR~vv~PG~p~~~~ive~F 53 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVF-KALGIPVIDADVVAREVVEPGTPAYRRIVEAF 53 (225)
T ss_pred eEEEeecccccChHHHHHHH-HHcCCcEecHHHHHHHHhcCCChHHHHHHHHh
Confidence 35679999999999999877 59999999999999999999888777766654
No 164
>PRK06761 hypothetical protein; Provisional
Probab=97.45 E-value=0.00012 Score=63.20 Aligned_cols=33 Identities=24% Similarity=0.231 Sum_probs=27.2
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~ 110 (177)
++.|+|.|+|||||||+++.|++.++...+++.
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~ 35 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVE 35 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEE
Confidence 457999999999999999999999876544443
No 165
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.45 E-value=0.00014 Score=57.57 Aligned_cols=40 Identities=30% Similarity=0.267 Sum_probs=30.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCchhhhhc
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQD 116 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~dLlr~e 116 (177)
.++..|+|+|+|||||||+++.|+..+ | +.+++. +-+++.
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~-d~~r~~ 60 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDG-DNVRHG 60 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECC-hHHHhh
Confidence 467789999999999999999999886 3 445554 445543
No 166
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=97.44 E-value=0.00011 Score=61.67 Aligned_cols=38 Identities=16% Similarity=0.149 Sum_probs=32.1
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCe-eeCchhhhhcc
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPR-ISMSSIVRQDL 117 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~-Is~~dLlr~el 117 (177)
+.|.|+|.|||||||+|+.+ ++.|.++ +++++-++..+
T Consensus 1 miI~i~G~~gsGKstva~~~-~~~g~~~~~~~~d~ik~~l 39 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFI-IENYNAVKYQLADPIKEIL 39 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHH-HhcCCcEEEehhHHHHHHH
Confidence 47899999999999999876 5567777 99999888754
No 167
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.43 E-value=9.8e-05 Score=61.08 Aligned_cols=33 Identities=27% Similarity=0.316 Sum_probs=27.9
Q ss_pred EEEEcCCCCCchHHHHHHHHHhC-------CCeeeCchhh
Q 030464 81 WAFIGSPRAKKHVYAEMLSKLLE-------VPRISMSSIV 113 (177)
Q Consensus 81 IlIiGpPGSGKSTlA~~LAk~lg-------l~~Is~~dLl 113 (177)
|.|.|++||||||+|+.|+..+. +.+|++++..
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 67899999999999999998873 4578888764
No 168
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.43 E-value=0.00014 Score=65.04 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=30.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC--chhhh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVR 114 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~--~dLlr 114 (177)
.+..|+|.||||+|||++|+.+|..++.+++.+ .+++.
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 456799999999999999999999998776554 34444
No 169
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.43 E-value=0.00012 Score=64.57 Aligned_cols=32 Identities=16% Similarity=0.125 Sum_probs=28.5
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~ 109 (177)
+..|+|.|+||+|||++++.||+.+|++++.+
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV 95 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRV 95 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEE
Confidence 44699999999999999999999999987744
No 170
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.42 E-value=0.00014 Score=67.13 Aligned_cols=34 Identities=12% Similarity=0.215 Sum_probs=29.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~ 110 (177)
.+.-|++.||||+|||.+|+.+|..++++.+.++
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~ 291 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLD 291 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEE
Confidence 4567899999999999999999999999877653
No 171
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.42 E-value=0.00012 Score=58.34 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
+|+|+|+||+||||+.+++.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 68999999999999999999988
No 172
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=97.42 E-value=0.00059 Score=56.05 Aligned_cols=29 Identities=17% Similarity=0.084 Sum_probs=25.2
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCeee
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRIS 108 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is 108 (177)
.|+|-|.-||||||+++.|++.++..++.
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~ 29 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYFP 29 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 37899999999999999999999876553
No 173
>COG0645 Predicted kinase [General function prediction only]
Probab=97.40 E-value=0.00087 Score=54.03 Aligned_cols=39 Identities=26% Similarity=0.279 Sum_probs=33.8
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCC
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP 119 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~ 119 (177)
-+++.|.||+||||+|+.|++.+|..+|+. |.+++.+..
T Consensus 3 l~l~~Gl~GsGKstlA~~l~~~lgA~~lrs-D~irk~L~g 41 (170)
T COG0645 3 LVLVGGLPGSGKSTLARGLAELLGAIRLRS-DVIRKRLFG 41 (170)
T ss_pred EEEEecCCCccHhHHHHHHHhhcCceEEeh-HHHHHHhcC
Confidence 467889999999999999999999999997 556766655
No 174
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=97.40 E-value=0.00014 Score=57.80 Aligned_cols=27 Identities=22% Similarity=0.158 Sum_probs=24.0
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCee
Q 030464 81 WAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (177)
Q Consensus 81 IlIiGpPGSGKSTlA~~LAk~lgl~~I 107 (177)
|+|.|++||||||+++.|++.+|+.++
T Consensus 2 I~ieG~~GsGKSTl~~~L~~~~~~~~~ 28 (193)
T cd01673 2 IVVEGNIGAGKSTLAKELAEHLGYEVV 28 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCccc
Confidence 789999999999999999998876544
No 175
>PRK06526 transposase; Provisional
Probab=97.39 E-value=0.00011 Score=62.20 Aligned_cols=46 Identities=17% Similarity=0.008 Sum_probs=33.8
Q ss_pred cCcccCCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCchhhhhc
Q 030464 71 EGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVRQD 116 (177)
Q Consensus 71 ~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~dLlr~e 116 (177)
.+.+...+.+++|+||||+|||++|..|+... .+.++++.+++...
T Consensus 91 ~~~fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l 141 (254)
T PRK06526 91 TLDFVTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARL 141 (254)
T ss_pred cCchhhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHH
Confidence 33455677899999999999999999987653 34456666666543
No 176
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.38 E-value=0.00016 Score=64.51 Aligned_cols=28 Identities=25% Similarity=0.220 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl 104 (177)
+...++|.||||+||||+|+.|++.++.
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4566899999999999999999999876
No 177
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.38 E-value=0.00016 Score=65.44 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=29.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~ 110 (177)
....|+|+||||+|||++|+.||+.++.+++.++
T Consensus 107 ~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id 140 (412)
T PRK05342 107 QKSNILLIGPTGSGKTLLAQTLARILDVPFAIAD 140 (412)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCceecc
Confidence 3457999999999999999999999998877654
No 178
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.38 E-value=0.00018 Score=64.80 Aligned_cols=41 Identities=15% Similarity=0.202 Sum_probs=32.4
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCee--eCchhhhhc
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRI--SMSSIVRQD 116 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~I--s~~dLlr~e 116 (177)
..|..+.|.||||+|||.+|+.+|+++|+..| +.++|+.+.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~ 188 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN 188 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence 45566778899999999999999999998755 445566543
No 179
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.36 E-value=0.0002 Score=62.96 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=29.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~ 110 (177)
.+..|+|.||||+|||++|+.+++.++..++.+.
T Consensus 155 ~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~ 188 (364)
T TIGR01242 155 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV 188 (364)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhCCCCEEecc
Confidence 4566999999999999999999999988776653
No 180
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=97.35 E-value=0.00023 Score=61.07 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=36.5
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccC
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS 118 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~ 118 (177)
+.+|..|+|-|+||+||||+|..||.++|+.++=-.|.+|+.+.
T Consensus 86 ~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR 129 (299)
T COG2074 86 MKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLR 129 (299)
T ss_pred cCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHH
Confidence 45677788888999999999999999999997666677777654
No 181
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.35 E-value=0.0018 Score=50.59 Aligned_cols=31 Identities=19% Similarity=0.147 Sum_probs=24.4
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCc
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMS 110 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~ 110 (177)
.++++|+||+||||++..++..+ | +.+++.+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 47899999999999999998765 4 3456654
No 182
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.34 E-value=0.00021 Score=64.40 Aligned_cols=31 Identities=13% Similarity=0.157 Sum_probs=27.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCee
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~I 107 (177)
...+|+|+|++||||||+++.|++.+|...+
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v 248 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNTTSA 248 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence 5578999999999999999999999988743
No 183
>PRK07429 phosphoribulokinase; Provisional
Probab=97.33 E-value=0.00023 Score=62.57 Aligned_cols=38 Identities=24% Similarity=0.257 Sum_probs=33.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC---CCeeeCchhh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE---VPRISMSSIV 113 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg---l~~Is~~dLl 113 (177)
.+++.|.|.|++||||||+++.|++.++ ..+++++++.
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~ 46 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH 46 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence 5778999999999999999999999987 5678888764
No 184
>PF13173 AAA_14: AAA domain
Probab=97.33 E-value=0.00026 Score=53.13 Aligned_cols=38 Identities=16% Similarity=0.077 Sum_probs=31.5
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhC----CCeeeCchhhhh
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLE----VPRISMSSIVRQ 115 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lg----l~~Is~~dLlr~ 115 (177)
...++|.||.||||||+++++++.+. +.++++++.-..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~ 43 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDR 43 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHH
Confidence 35689999999999999999998865 788888875443
No 185
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.32 E-value=0.00021 Score=61.87 Aligned_cols=39 Identities=23% Similarity=0.246 Sum_probs=30.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC-------CCeeeCchhhh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-------VPRISMSSIVR 114 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg-------l~~Is~~dLlr 114 (177)
..+..|.|.|++||||||+|+.|+..+. +..+++++...
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~ 105 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLH 105 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccc
Confidence 4677889999999999999998876653 55678877553
No 186
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.30 E-value=0.00023 Score=57.46 Aligned_cols=26 Identities=8% Similarity=-0.054 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++..|+|+||+||||+|++++|.+.+
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 57789999999999999999998876
No 187
>PHA02244 ATPase-like protein
Probab=97.30 E-value=0.00022 Score=63.96 Aligned_cols=39 Identities=18% Similarity=0.230 Sum_probs=33.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVR 114 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr 114 (177)
..+..|+|.||||+|||++|+.|+..++.+++.+.+++.
T Consensus 117 ~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d 155 (383)
T PHA02244 117 NANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMD 155 (383)
T ss_pred hcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChH
Confidence 355679999999999999999999999999998876543
No 188
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.29 E-value=0.0003 Score=63.60 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=30.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI 112 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dL 112 (177)
.-...++-||||+||||+|+.||+..+..+..+...
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv 82 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV 82 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc
Confidence 334678999999999999999999999988777653
No 189
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.29 E-value=0.00056 Score=56.88 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=25.2
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCc
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMS 110 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~ 110 (177)
.++-.++|.|+||+||||+|.+++... ++.+++..
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e 61 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ 61 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 455689999999999999986654432 34466654
No 190
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.28 E-value=0.00024 Score=64.37 Aligned_cols=32 Identities=25% Similarity=0.380 Sum_probs=28.3
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~ 109 (177)
...|+|+||||+|||++|+.||+.++++++.+
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~ 147 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIA 147 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeEEe
Confidence 45899999999999999999999999887644
No 191
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.28 E-value=0.00027 Score=63.62 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=29.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~ 110 (177)
.+..|+|.||||+|||++|+.+|...+..++.+.
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~ 211 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVV 211 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEe
Confidence 4567999999999999999999999998877663
No 192
>CHL00176 ftsH cell division protein; Validated
Probab=97.27 E-value=0.001 Score=63.37 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=29.8
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~ 110 (177)
+..|+|.||||+|||++|+.+|...+++++.+.
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is 248 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSIS 248 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeeecc
Confidence 556999999999999999999999999988764
No 193
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.25 E-value=0.00021 Score=55.86 Aligned_cols=33 Identities=12% Similarity=0.040 Sum_probs=25.3
Q ss_pred EEEEcCCCCCchHHHHHHHHHh-----CCCeeeCchhh
Q 030464 81 WAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIV 113 (177)
Q Consensus 81 IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~dLl 113 (177)
++|.|+||+|||+++.+++... .+.++++.+-.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~ 39 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESP 39 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCH
Confidence 6899999999999999886542 45578875433
No 194
>PRK06921 hypothetical protein; Provisional
Probab=97.24 E-value=0.00027 Score=60.18 Aligned_cols=38 Identities=16% Similarity=0.110 Sum_probs=29.0
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh----CC--CeeeCchhhhh
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLL----EV--PRISMSSIVRQ 115 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~l----gl--~~Is~~dLlr~ 115 (177)
...++|.|+||+|||+++..+++.+ |. .+++..+++..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~ 160 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGD 160 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHH
Confidence 4579999999999999999998864 33 36666565554
No 195
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00029 Score=67.48 Aligned_cols=37 Identities=22% Similarity=0.349 Sum_probs=31.5
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHHhCCCe--eeCch
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPR--ISMSS 111 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~--Is~~d 111 (177)
-.++++++++||||+|||.+++.+|+.+|-.+ +++|.
T Consensus 347 ~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGG 385 (782)
T COG0466 347 KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGG 385 (782)
T ss_pred cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCc
Confidence 35778999999999999999999999998665 55554
No 196
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.00038 Score=60.89 Aligned_cols=36 Identities=25% Similarity=0.204 Sum_probs=32.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI 112 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dL 112 (177)
.+..|+|+||.+||||-+|-.||+++|..+||+|.+
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSm 37 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSM 37 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchh
Confidence 356789999999999999999999999999999874
No 197
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.22 E-value=0.00057 Score=58.93 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=29.1
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhC-----CCeeeCchhhh
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVR 114 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~lg-----l~~Is~~dLlr 114 (177)
.|.|.|++||||||++++|++.++ +.+|+.++..+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 378999999999999999998773 45788777666
No 198
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.22 E-value=0.00038 Score=59.12 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCe
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPR 106 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~ 106 (177)
.+..++|.||||+|||++|+.+|+.++...
T Consensus 29 ~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~ 58 (305)
T TIGR00635 29 ALDHLLLYGPPGLGKTTLAHIIANEMGVNL 58 (305)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 345689999999999999999999988653
No 199
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.22 E-value=0.0013 Score=63.07 Aligned_cols=33 Identities=15% Similarity=0.154 Sum_probs=29.2
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~ 110 (177)
+..|+|.||||||||++|+.+|...+.+++++.
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~~~fi~v~ 519 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESGANFIAVR 519 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCEEEEe
Confidence 456899999999999999999999998877764
No 200
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.21 E-value=0.00066 Score=55.40 Aligned_cols=88 Identities=15% Similarity=0.149 Sum_probs=51.8
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHH------hCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCc------------
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL------LEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEV------------ 136 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~------lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~------------ 136 (177)
..++-.++|.|+||+|||++|.+++.. -++.++++.+-.++.++.-..++-.+.++.++|..
T Consensus 16 ip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~ 95 (226)
T PF06745_consen 16 IPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGW 95 (226)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-
T ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccccc
Confidence 457788999999999999999986532 34568888654433322222333334555555431
Q ss_pred ---chHHHHHHHHHHHHHccCCCCcceEEEeCC
Q 030464 137 ---VSEDIIFGLLSKRLEDGYYRGEIGFILDGL 166 (177)
Q Consensus 137 ---Ipdeli~~Ll~~~L~~~~~~~~~G~ILDGf 166 (177)
-++++ ...+.+.+++.. ..-+|||.+
T Consensus 96 ~~~~~~~l-~~~i~~~i~~~~---~~~vVIDsl 124 (226)
T PF06745_consen 96 SPNDLEEL-LSKIREAIEELK---PDRVVIDSL 124 (226)
T ss_dssp TSCCHHHH-HHHHHHHHHHHT---SSEEEEETH
T ss_pred cccCHHHH-HHHHHHHHHhcC---CCEEEEECH
Confidence 12233 344455566553 368999975
No 201
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.21 E-value=0.00035 Score=61.17 Aligned_cols=31 Identities=13% Similarity=0.130 Sum_probs=27.9
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeee
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS 108 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is 108 (177)
..+|+|+|+||+||||+++.|++.++.+++.
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~ 192 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAW 192 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEe
Confidence 5689999999999999999999999988743
No 202
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.21 E-value=0.00039 Score=63.79 Aligned_cols=89 Identities=12% Similarity=0.015 Sum_probs=56.9
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCchhhhhccCCCCchHHHHHHHHHcCCcc----------hH
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVV----------SE 139 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~I----------pd 139 (177)
..++-.++|.|+||+||||++.+++... | +.+++..+-..+.+..-..+|-.+.+..++|... ++
T Consensus 260 ~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~ 339 (484)
T TIGR02655 260 FFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLE 339 (484)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChH
Confidence 4577889999999999999999987754 3 5688887655444333233333345555555321 24
Q ss_pred HHHHHHHHHHHHccCCCCcceEEEeCCC
Q 030464 140 DIIFGLLSKRLEDGYYRGEIGFILDGLP 167 (177)
Q Consensus 140 eli~~Ll~~~L~~~~~~~~~G~ILDGfP 167 (177)
+.+..++ +.+++.. .+-+|||.+-
T Consensus 340 ~~~~~i~-~~i~~~~---~~~vvIDsi~ 363 (484)
T TIGR02655 340 DHLQIIK-SEIADFK---PARIAIDSLS 363 (484)
T ss_pred HHHHHHH-HHHHHcC---CCEEEEcCHH
Confidence 5555554 4455543 3579999863
No 203
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.21 E-value=0.00069 Score=56.16 Aligned_cols=26 Identities=23% Similarity=0.110 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLE 103 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lg 103 (177)
+..++|.|++|+||||+++.+++.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 44689999999999999999998875
No 204
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.20 E-value=0.00068 Score=56.89 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=18.3
Q ss_pred EEcCCCCCchHHHHHHHHHhC
Q 030464 83 FIGSPRAKKHVYAEMLSKLLE 103 (177)
Q Consensus 83 IiGpPGSGKSTlA~~LAk~lg 103 (177)
|+|||||||||+|+.+.+-+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~ 21 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLE 21 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 689999999999999988763
No 205
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.00025 Score=63.34 Aligned_cols=52 Identities=17% Similarity=0.158 Sum_probs=41.2
Q ss_pred CccccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC--chhhhh
Q 030464 64 SVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVRQ 115 (177)
Q Consensus 64 ~~~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~--~dLlr~ 115 (177)
..|.+.+.|.-...+..|++.||||+|||-+|+++|++-|..+|++ +.+..+
T Consensus 113 r~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~K 166 (386)
T KOG0737|consen 113 RRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSK 166 (386)
T ss_pred cchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchh
Confidence 4566777777767888899999999999999999999998776655 445443
No 206
>PLN02348 phosphoribulokinase
Probab=97.19 E-value=0.00036 Score=62.87 Aligned_cols=28 Identities=11% Similarity=0.162 Sum_probs=25.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg 103 (177)
.+++.|.|.|++||||||+|++|++.++
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4678889999999999999999999986
No 207
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.19 E-value=0.00041 Score=55.43 Aligned_cols=37 Identities=32% Similarity=0.433 Sum_probs=28.4
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCC----C--eeeCchhhh
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEV----P--RISMSSIVR 114 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl----~--~Is~~dLlr 114 (177)
...++++||+|+|||.+|+.||+.+.+ + .+++.++-.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc
Confidence 357889999999999999999999885 3 455544433
No 208
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.17 E-value=0.0014 Score=56.94 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.+..++|.||||+|||++++.+.+.+
T Consensus 39 ~~~~i~I~G~~GtGKT~l~~~~~~~l 64 (365)
T TIGR02928 39 RPSNVFIYGKTGTGKTAVTKYVMKEL 64 (365)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999998754
No 209
>PRK04195 replication factor C large subunit; Provisional
Probab=97.17 E-value=0.00037 Score=63.72 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=28.7
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~ 109 (177)
+..++|.||||+||||+|+.||+.+++.++.+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~iel 70 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIEL 70 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 56789999999999999999999999877765
No 210
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=97.16 E-value=0.0022 Score=53.65 Aligned_cols=89 Identities=15% Similarity=0.181 Sum_probs=52.0
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCchhhhhccCCC---------CchHHHHHHHHHcCCcchHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQDLSPR---------SSLHKQIANAVNRGEVVSEDI 141 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~dLlr~el~~~---------s~lgk~i~~~l~~G~~Ipdel 141 (177)
..++.|+++|.|+.|||++|++|+.-+ | ..++++|+.=|+..... ...+..+++. +-.+.
T Consensus 10 ~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~------~a~~~ 83 (222)
T PF01591_consen 10 AGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQ------IAKEA 83 (222)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHH------HHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHH------HHHHH
Confidence 467889999999999999999999765 3 45899998777765431 1222223222 22234
Q ss_pred HHHHHHHHHHccCCCCcceEEEeCCCCCHHHHH
Q 030464 142 IFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAT 174 (177)
Q Consensus 142 i~~Ll~~~L~~~~~~~~~G~ILDGfPrt~~QAe 174 (177)
+.+++ ..|.+.. ..--|+|+--.|.+.=+
T Consensus 84 l~dl~-~~l~~~~---G~VAI~DATN~T~~RR~ 112 (222)
T PF01591_consen 84 LEDLI-EWLQEEG---GQVAIFDATNSTRERRK 112 (222)
T ss_dssp HHHHH-HHHHTS-----SEEEEES---SHHHHH
T ss_pred HHHHH-HHHhcCC---CeEEEEeCCCCCHHHHH
Confidence 44444 3355332 45789999877765433
No 211
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=97.16 E-value=0.00037 Score=56.19 Aligned_cols=37 Identities=22% Similarity=0.256 Sum_probs=29.7
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCC--eeeCchhhhh
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVP--RISMSSIVRQ 115 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~--~Is~~dLlr~ 115 (177)
..|++.|++.|||||+|+.|.+.+.-+ |+++++++..
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~ 40 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDM 40 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhh
Confidence 468999999999999999999998765 7888777763
No 212
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.15 E-value=0.00044 Score=62.04 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=28.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~ 110 (177)
+...++|.||||+||||+|+.|++..+..++.+.
T Consensus 35 ~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~ 68 (413)
T PRK13342 35 RLSSMILWGPPGTGKTTLARIIAGATDAPFEALS 68 (413)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 3457899999999999999999999887766654
No 213
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.15 E-value=0.00051 Score=56.52 Aligned_cols=49 Identities=14% Similarity=-0.016 Sum_probs=34.1
Q ss_pred ccccCcc-CcccCCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCchhh
Q 030464 65 VTLPDTE-GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIV 113 (177)
Q Consensus 65 ~~~~~~~-~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~dLl 113 (177)
.+.++.- +....++-.++|.|+||+|||++|.+++... .+.++++.+-.
T Consensus 11 i~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~ 65 (234)
T PRK06067 11 NEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTS 65 (234)
T ss_pred CHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCH
Confidence 4455554 2344577788999999999999999986542 35577775433
No 214
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0003 Score=67.90 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=33.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc--hhhhhc
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVRQD 116 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~--dLlr~e 116 (177)
-|.-++++||||+|||-+|+++|.+-|+|++++. +++.-.
T Consensus 343 iPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 343 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 4556899999999999999999999999999987 355443
No 215
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.14 E-value=0.00032 Score=51.45 Aligned_cols=23 Identities=30% Similarity=0.244 Sum_probs=20.4
Q ss_pred EEEEcCCCCCchHHHHHHHHHhC
Q 030464 81 WAFIGSPRAKKHVYAEMLSKLLE 103 (177)
Q Consensus 81 IlIiGpPGSGKSTlA~~LAk~lg 103 (177)
|+|.|+||+|||++|+.|++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 67999999999999999988653
No 216
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.13 E-value=0.00081 Score=56.06 Aligned_cols=83 Identities=18% Similarity=0.129 Sum_probs=48.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC--C-----CeeeCchhhhhccCCCCchHHHHHHHHHcCC-----cchHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE--V-----PRISMSSIVRQDLSPRSSLHKQIANAVNRGE-----VVSEDIIF 143 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg--l-----~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~-----~Ipdeli~ 143 (177)
.....|+|.|++|+|||++|..+++... - ..++.+.- .....+.+.+...+.... ....+...
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~-----~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 91 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKN-----PSLEQLLEQILRQLGEPDSSISDPKDIEELQ 91 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES------SCCHHHHHHHHHHHTCC-STSSCCSSHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccc-----ccccccccccccccccccccccccccccccc
Confidence 3556788999999999999999987722 1 12222210 011223344445554441 12334466
Q ss_pred HHHHHHHHccCCCCcceEEEeCCC
Q 030464 144 GLLSKRLEDGYYRGEIGFILDGLP 167 (177)
Q Consensus 144 ~Ll~~~L~~~~~~~~~G~ILDGfP 167 (177)
+.+.+.|.+. .--+|||+.-
T Consensus 92 ~~l~~~L~~~----~~LlVlDdv~ 111 (287)
T PF00931_consen 92 DQLRELLKDK----RCLLVLDDVW 111 (287)
T ss_dssp HHHHHHHCCT----SEEEEEEEE-
T ss_pred ccchhhhccc----cceeeeeeec
Confidence 6667777764 3578999863
No 217
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.12 E-value=0.00035 Score=53.55 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=21.0
Q ss_pred EEEEcCCCCCchHHHHHHHHHhC
Q 030464 81 WAFIGSPRAKKHVYAEMLSKLLE 103 (177)
Q Consensus 81 IlIiGpPGSGKSTlA~~LAk~lg 103 (177)
|+|+||+||||||+++.|++.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 68899999999999999999764
No 218
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.12 E-value=0.00045 Score=59.87 Aligned_cols=30 Identities=20% Similarity=0.200 Sum_probs=26.3
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCee
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~I 107 (177)
+..++|.||||+|||++|+.+|+.++....
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l~~~~~ 80 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEMGVNIR 80 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 456899999999999999999999987643
No 219
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.12 E-value=0.0024 Score=54.57 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.++..|+|+|+||+||||.+..||..+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 356678889999999999999998765
No 220
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.12 E-value=0.00034 Score=56.56 Aligned_cols=38 Identities=5% Similarity=0.057 Sum_probs=28.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCchhh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIV 113 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~dLl 113 (177)
..+..|+|.|+||+|||++|+.+++.. .+.+++..++.
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 345679999999999999999998765 24456655543
No 221
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.12 E-value=0.00054 Score=53.06 Aligned_cols=30 Identities=20% Similarity=0.098 Sum_probs=26.6
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~ 105 (177)
..+..|+|.|+.|+||||+++.+++.+|+.
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 355679999999999999999999999864
No 222
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=97.11 E-value=0.00048 Score=57.36 Aligned_cols=31 Identities=19% Similarity=0.112 Sum_probs=27.2
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeee
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS 108 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is 108 (177)
.+.|+|-|+-|+||||+|+.||+++|..++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~~ 34 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVFY 34 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCceee
Confidence 5678999999999999999999999976543
No 223
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.10 E-value=0.00046 Score=49.99 Aligned_cols=23 Identities=13% Similarity=0.044 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
+|+|+|++||||||+.++|+...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEECcCCCCHHHHHHHHhcCC
Confidence 69999999999999999998754
No 224
>PRK09087 hypothetical protein; Validated
Probab=97.10 E-value=0.00036 Score=57.99 Aligned_cols=33 Identities=12% Similarity=0.023 Sum_probs=29.2
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCch
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~d 111 (177)
..++|.|++||||||+++.+++..+..+++.++
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~ 77 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPNE 77 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecHHH
Confidence 458999999999999999999998888888754
No 225
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.10 E-value=0.0018 Score=52.12 Aligned_cols=32 Identities=22% Similarity=0.140 Sum_probs=28.7
Q ss_pred EEEEcCCCCCchHHHHHHHHHhC-CCeeeCchh
Q 030464 81 WAFIGSPRAKKHVYAEMLSKLLE-VPRISMSSI 112 (177)
Q Consensus 81 IlIiGpPGSGKSTlA~~LAk~lg-l~~Is~~dL 112 (177)
|+=++.+||||||+|..|++.|| +-|+--+++
T Consensus 2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI 34 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNI 34 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHcCCCCccccCCC
Confidence 45578999999999999999999 999998876
No 226
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.10 E-value=0.00051 Score=62.66 Aligned_cols=33 Identities=12% Similarity=0.143 Sum_probs=28.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~ 109 (177)
.+..++|.||||+|||++|+.+|..++..++.+
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V 248 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSATFLRV 248 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEE
Confidence 456789999999999999999999998776654
No 227
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.10 E-value=0.00047 Score=56.24 Aligned_cols=33 Identities=24% Similarity=0.199 Sum_probs=26.3
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhC-----CCeeeCc
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMS 110 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lg-----l~~Is~~ 110 (177)
|..|+|+||+|+||||.+.+||..+. +..++++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D 38 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISAD 38 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEES
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCC
Confidence 56789999999999999999998763 4455553
No 228
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.10 E-value=0.0022 Score=56.25 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
..+..++|.|+||+|||++++.+++.+
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998865
No 229
>PRK08116 hypothetical protein; Validated
Probab=97.10 E-value=0.00087 Score=57.10 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=30.6
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCchhhhhc
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQD 116 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~dLlr~e 116 (177)
+.-++|.|+||+|||++|..+++.+ + +.++++.+++...
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i 157 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRI 157 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 3458999999999999999998874 3 4467777776653
No 230
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.09 E-value=0.00041 Score=60.17 Aligned_cols=41 Identities=20% Similarity=0.354 Sum_probs=34.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc--hhhhhcc
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVRQDL 117 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~--dLlr~el 117 (177)
-|.+|+|.||||.|||.+|+.||.+.+++.+.+. +|+-+.+
T Consensus 150 APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehV 192 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHV 192 (368)
T ss_pred CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHh
Confidence 5789999999999999999999999999988776 3555443
No 231
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.08 E-value=0.00046 Score=56.38 Aligned_cols=36 Identities=8% Similarity=0.065 Sum_probs=28.9
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCchhh
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIV 113 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~dLl 113 (177)
...++|.|+||+|||++|+.++... .+.+++..++.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~ 82 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL 82 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH
Confidence 3468999999999999999998875 56677766543
No 232
>PLN02796 D-glycerate 3-kinase
Probab=97.07 E-value=0.00061 Score=60.49 Aligned_cols=38 Identities=11% Similarity=0.061 Sum_probs=31.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC-----CCeeeCchhh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIV 113 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg-----l~~Is~~dLl 113 (177)
.++..|.|.|++||||||+++.|+..+. ...|++++..
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 3678899999999999999999998774 4567888765
No 233
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=97.07 E-value=0.00067 Score=59.11 Aligned_cols=34 Identities=15% Similarity=0.022 Sum_probs=29.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCch
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~d 111 (177)
.++.|+|+||.|||||.+|-.||++ +...||.|.
T Consensus 3 ~~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS 36 (300)
T PRK14729 3 ENKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDS 36 (300)
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh-CCcEEeccH
Confidence 3457899999999999999999999 458999886
No 234
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.07 E-value=0.0011 Score=54.92 Aligned_cols=47 Identities=9% Similarity=0.035 Sum_probs=32.2
Q ss_pred ccccCcc-CcccCCCeEEEEEcCCCCCchHHHHHHHHH---hC--CCeeeCch
Q 030464 65 VTLPDTE-GRERRRGVHWAFIGSPRAKKHVYAEMLSKL---LE--VPRISMSS 111 (177)
Q Consensus 65 ~~~~~~~-~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~---lg--l~~Is~~d 111 (177)
.+.++.- +....++-.++|.|+||+|||++|.+++.. -| +.++++.+
T Consensus 7 i~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 7 IPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred cHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 3444442 223457888999999999999999876543 23 55777665
No 235
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=97.06 E-value=0.0016 Score=51.40 Aligned_cols=50 Identities=14% Similarity=0.150 Sum_probs=34.5
Q ss_pred EEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCC
Q 030464 83 FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGE 135 (177)
Q Consensus 83 IiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~ 135 (177)
|-|..||||||+++.|++.+.-..+. .++. .-...+++|+.+++.+....
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~--~~~~-~~~~~~~~g~~ir~~l~~~~ 50 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYK--VIIT-FPPGSTPIGELIRELLRSES 50 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEE--EEEE-ESSTSSHHHHHHHHHHHTSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCc--cccc-CCCCCChHHHHHHHHHhccc
Confidence 56999999999999999987544333 1111 11345678888888888433
No 236
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.001 Score=59.49 Aligned_cols=58 Identities=16% Similarity=0.181 Sum_probs=44.5
Q ss_pred ccccCccCcc---cCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc--hhhhhccCCCCc
Q 030464 65 VTLPDTEGRE---RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVRQDLSPRSS 122 (177)
Q Consensus 65 ~~~~~~~~~~---~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~--dLlr~el~~~s~ 122 (177)
.|..+.+.+. +..|+-|++.||||+|||-+|+++|...+..+|.+- +|+++.+..+..
T Consensus 169 LPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaR 231 (406)
T COG1222 169 LPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGAR 231 (406)
T ss_pred ccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchH
Confidence 4555555443 356778999999999999999999999998877764 688877765543
No 237
>PRK06620 hypothetical protein; Validated
Probab=97.06 E-value=0.00042 Score=57.12 Aligned_cols=30 Identities=13% Similarity=0.134 Sum_probs=25.4
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeee
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRIS 108 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is 108 (177)
..++|.||||||||++++.+++..+..+++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~ 74 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK 74 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence 458999999999999999999888765554
No 238
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.00052 Score=60.80 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=29.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~ 109 (177)
...-+|+++||.|||||.+|+-||+.+++|+-=.
T Consensus 95 L~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiA 128 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIA 128 (408)
T ss_pred eeeccEEEECCCCCcHHHHHHHHHHHhCCCeeec
Confidence 4567899999999999999999999999995443
No 239
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.00062 Score=64.61 Aligned_cols=43 Identities=14% Similarity=0.146 Sum_probs=35.6
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc--hhhhhcc
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVRQDL 117 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~--dLlr~el 117 (177)
...|.-|++.||||||||++|+.||..-+..++++. +|+.+..
T Consensus 465 i~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~v 509 (693)
T KOG0730|consen 465 ISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYV 509 (693)
T ss_pred CCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhc
Confidence 357788999999999999999999999999988884 4555433
No 240
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.02 E-value=0.00067 Score=55.92 Aligned_cols=39 Identities=28% Similarity=0.371 Sum_probs=30.2
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHHhCC-----Ce-eeCchhh
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEV-----PR-ISMSSIV 113 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl-----~~-Is~~dLl 113 (177)
..++..|.|.|++||||||+++.|+..+.- .+ +++++..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~ 74 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFH 74 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEeccccc
Confidence 457888999999999999999999987642 12 6666543
No 241
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.02 E-value=0.001 Score=58.57 Aligned_cols=39 Identities=15% Similarity=0.184 Sum_probs=32.0
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCchhhhhc
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVRQD 116 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~dLlr~e 116 (177)
...++|.|+||+|||+++..+|+.+ .+.++++.+++...
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l 226 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL 226 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH
Confidence 3679999999999999999999875 46678887876643
No 242
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=97.01 E-value=0.0028 Score=52.47 Aligned_cols=55 Identities=22% Similarity=0.340 Sum_probs=40.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRG 134 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G 134 (177)
+++-|+|-|.=||||||+++.|++.+.-..+.+ ++..+ ...+++++.+++.+.++
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v--~~trE-P~~~~ige~iR~~ll~~ 56 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKV--VLTRE-PGGTPIGEKIRELLLNG 56 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeE--EEEeC-CCCChHHHHHHHHHcCC
Confidence 577899999999999999999999874433321 11112 34488999999988876
No 243
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.01 E-value=0.00068 Score=57.89 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhC
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLE 103 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lg 103 (177)
..++|.||||+||||+|+.+++.+.
T Consensus 37 ~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 37 PHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3589999999999999999999863
No 244
>PRK13976 thymidylate kinase; Provisional
Probab=97.00 E-value=0.0035 Score=51.60 Aligned_cols=48 Identities=15% Similarity=0.163 Sum_probs=32.8
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCC-----CeeeCchhhhhccCCCCchHHHHHHHHHc
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLLEV-----PRISMSSIVRQDLSPRSSLHKQIANAVNR 133 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~lgl-----~~Is~~dLlr~el~~~s~lgk~i~~~l~~ 133 (177)
-|+|-|.-||||||+++.|++.+.- .++-+ + -...+.+++.+++.+..
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~----~--eP~~~~~g~~ir~~l~~ 54 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLT----R--EPGGTSFNELVRGLLLS 54 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEe----e--CCCCCHHHHHHHHHHcC
Confidence 4889999999999999999998742 11111 1 11245677777777653
No 245
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.00 E-value=0.002 Score=54.49 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=29.1
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCchhhhh
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQ 115 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~dLlr~ 115 (177)
.++|.|+||+|||+++..|+..+ | +.++++.+++..
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~ 141 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSA 141 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHH
Confidence 68999999999999999999876 3 446677777653
No 246
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.00064 Score=60.69 Aligned_cols=40 Identities=28% Similarity=0.272 Sum_probs=34.1
Q ss_pred cCcccCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464 71 EGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (177)
Q Consensus 71 ~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~ 110 (177)
+.-...-|++|+++||.|+|||..|++||+.-|.|+|-+.
T Consensus 43 ~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVE 82 (444)
T COG1220 43 ELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVE 82 (444)
T ss_pred HHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence 3333457899999999999999999999999999988764
No 247
>PRK06893 DNA replication initiation factor; Validated
Probab=96.99 E-value=0.00068 Score=56.11 Aligned_cols=33 Identities=15% Similarity=0.124 Sum_probs=26.9
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCc
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMS 110 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~ 110 (177)
.+.++|.||||+|||++++.++..+ ++.++++.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 3457999999999999999999875 56666664
No 248
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.00067 Score=65.23 Aligned_cols=40 Identities=23% Similarity=0.402 Sum_probs=33.7
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHHhCCC--eeeCchhhh
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVP--RISMSSIVR 114 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~--~Is~~dLlr 114 (177)
..++++++|.||||+|||.+++.||..+|-. .||+|.+-.
T Consensus 435 s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tD 476 (906)
T KOG2004|consen 435 SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTD 476 (906)
T ss_pred cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEecccccc
Confidence 3588999999999999999999999999855 567776543
No 249
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.98 E-value=0.00068 Score=59.15 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=28.6
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCC-eeeCchhhh
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLLEVP-RISMSSIVR 114 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~lgl~-~Is~~dLlr 114 (177)
.+++.||||.||||+|..+|+++|+. .+..+-.+.
T Consensus 54 HvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le 89 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE 89 (332)
T ss_pred eEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc
Confidence 69999999999999999999999876 344444443
No 250
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.0007 Score=61.76 Aligned_cols=35 Identities=17% Similarity=0.117 Sum_probs=29.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCch
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~d 111 (177)
.+..+++.||||+|||.+|+.+|...+.+++++..
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~ 309 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKG 309 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeC
Confidence 44479999999999999999999988888777653
No 251
>PRK04328 hypothetical protein; Provisional
Probab=96.97 E-value=0.0016 Score=54.73 Aligned_cols=47 Identities=9% Similarity=0.022 Sum_probs=32.0
Q ss_pred ccccCccC-cccCCCeEEEEEcCCCCCchHHHHHHHHH---h--CCCeeeCch
Q 030464 65 VTLPDTEG-RERRRGVHWAFIGSPRAKKHVYAEMLSKL---L--EVPRISMSS 111 (177)
Q Consensus 65 ~~~~~~~~-~~~~~~~~IlIiGpPGSGKSTlA~~LAk~---l--gl~~Is~~d 111 (177)
.+.++.-. ....++-.++|.|+||+|||++|.+++.. . .+.++++.+
T Consensus 9 i~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee 61 (249)
T PRK04328 9 IPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE 61 (249)
T ss_pred chhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence 34455432 22357888999999999999999886543 1 345777654
No 252
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.96 E-value=0.0004 Score=53.79 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~ 109 (177)
.|++.|+||+|||++++.||+.+|..+..+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RI 30 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRI 30 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEE
Confidence 378999999999999999999998876544
No 253
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.95 E-value=0.00062 Score=53.42 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHH
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
+.+|+|+|+.||||||++++|-..
T Consensus 1 MkrimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 1 MKRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred CceEEEECCCCCCHHHHHHHHcCC
Confidence 468999999999999999999664
No 254
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.94 E-value=0.0028 Score=55.18 Aligned_cols=40 Identities=13% Similarity=0.116 Sum_probs=32.1
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh---CC--CeeeCchhhhhc
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL---EV--PRISMSSIVRQD 116 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l---gl--~~Is~~dLlr~e 116 (177)
....++|.|+||+|||+++..|+..+ |+ .++++.++++..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~l 199 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIREL 199 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHH
Confidence 44679999999999999999998876 44 466777777654
No 255
>PF13245 AAA_19: Part of AAA domain
Probab=96.94 E-value=0.00093 Score=46.65 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=17.4
Q ss_pred CeEEEEEcCCCCCch-HHHHHHHHHh
Q 030464 78 GVHWAFIGSPRAKKH-VYAEMLSKLL 102 (177)
Q Consensus 78 ~~~IlIiGpPGSGKS-TlA~~LAk~l 102 (177)
....+|.|||||||| +++..++..+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 344677999999999 5555555444
No 256
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.94 E-value=0.00078 Score=65.20 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=28.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~ 109 (177)
++..++|.||||+|||++|+.||+.++.+++.+
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i 378 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFVRF 378 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCCeEEE
Confidence 445799999999999999999999998776543
No 257
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.91 E-value=0.00072 Score=50.59 Aligned_cols=33 Identities=15% Similarity=0.117 Sum_probs=25.4
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCchh
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSI 112 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~dL 112 (177)
.++|.|+||+|||+++..++... .+.+++.+..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~ 38 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEE 38 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcc
Confidence 36899999999999999998775 2446665543
No 258
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.91 E-value=0.00069 Score=57.96 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=28.1
Q ss_pred EEEEcCCCCCchHHHHHHHHHh---CCCeeeCchhh
Q 030464 81 WAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIV 113 (177)
Q Consensus 81 IlIiGpPGSGKSTlA~~LAk~l---gl~~Is~~dLl 113 (177)
|.|+|++||||||+++.|+..+ +..+++.+++.
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~ 37 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH 37 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence 6799999999999999999876 45678888764
No 259
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0015 Score=57.78 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=35.4
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCeeeC--chhhhhccCCCCchHH
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVRQDLSPRSSLHK 125 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~--~dLlr~el~~~s~lgk 125 (177)
-|++.||||.|||.+|+++|-+-+-.++|+ .||+.+-+.....+-+
T Consensus 168 giLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVk 215 (439)
T KOG0739|consen 168 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVK 215 (439)
T ss_pred eEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHH
Confidence 478999999999999999999988776665 4788776654444433
No 260
>PRK13695 putative NTPase; Provisional
Probab=96.90 E-value=0.00086 Score=52.73 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++|+|+|+||+||||+++.+++.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999987764
No 261
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.90 E-value=0.00097 Score=62.07 Aligned_cols=32 Identities=16% Similarity=0.073 Sum_probs=27.5
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~ 110 (177)
...++.|||||||||..+.||+++|+.++...
T Consensus 46 ~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~ 77 (519)
T PF03215_consen 46 RILLLTGPSGCGKTTTVKVLAKELGFEVQEWI 77 (519)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeeEEec
Confidence 35678899999999999999999998877643
No 262
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.89 E-value=0.0022 Score=52.33 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=28.5
Q ss_pred ccCCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCch
Q 030464 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSS 111 (177)
Q Consensus 74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~d 111 (177)
...++-.++|.|+||+|||+++..++... ++.+++...
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~ 58 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE 58 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 44578889999999999999998775421 355677644
No 263
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.89 E-value=0.00068 Score=56.36 Aligned_cols=33 Identities=9% Similarity=-0.033 Sum_probs=26.3
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhC-----CCeeeCch
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSS 111 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lg-----l~~Is~~d 111 (177)
..++|.||||+|||++++.++.... +.++++++
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 4689999999999999999987653 45666654
No 264
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.0028 Score=61.10 Aligned_cols=54 Identities=13% Similarity=0.103 Sum_probs=41.8
Q ss_pred ccccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc--hhhhhccCC
Q 030464 65 VTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVRQDLSP 119 (177)
Q Consensus 65 ~~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~--dLlr~el~~ 119 (177)
+|.....++- .-+..|++.||||||||.+|.++|...++.+||+. +|+.+.+.+
T Consensus 689 yp~if~~~pl-r~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGa 744 (952)
T KOG0735|consen 689 YPQIFANCPL-RLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGA 744 (952)
T ss_pred chHHHhhCCc-ccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcc
Confidence 3444443333 24457999999999999999999999999999997 588777654
No 265
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=96.88 E-value=0.00084 Score=63.45 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=33.3
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCchhhhhccC
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVRQDLS 118 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~dLlr~el~ 118 (177)
.++..|+++|.|||||||+|+.|++.+ ++.+++- |.+|+.+.
T Consensus 458 ~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~-D~~r~~l~ 504 (632)
T PRK05506 458 QKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDG-DNVRHGLN 504 (632)
T ss_pred CCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcC-hhhhhccC
Confidence 467889999999999999999999986 3466775 55666554
No 266
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.87 E-value=0.00096 Score=49.56 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
...+|+|+|+||+||||++..+...
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999998654
No 267
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=96.86 E-value=0.001 Score=60.82 Aligned_cols=38 Identities=13% Similarity=0.113 Sum_probs=31.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC-----CCeeeCchhh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIV 113 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg-----l~~Is~~dLl 113 (177)
.++..|.|.|++||||||+++.|...+. +..|++++..
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 3678889999999999999999977652 5678888876
No 268
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.00082 Score=63.75 Aligned_cols=41 Identities=15% Similarity=0.185 Sum_probs=35.0
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc--hhhhhccC
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVRQDLS 118 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~--dLlr~el~ 118 (177)
|--|++.||||||||-+|+++|.+-|+.+|++. +|+.+.+.
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVG 587 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVG 587 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhh
Confidence 446999999999999999999999999999987 47766543
No 269
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.84 E-value=0.00092 Score=69.91 Aligned_cols=38 Identities=18% Similarity=0.147 Sum_probs=32.1
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc--hhhh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVR 114 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~--dLlr 114 (177)
.+.-|+++||||+|||.+|++||...+++.|++. +++.
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence 4557999999999999999999999999866654 5664
No 270
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.84 E-value=0.0017 Score=52.61 Aligned_cols=24 Identities=8% Similarity=0.062 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhC
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLLE 103 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~lg 103 (177)
.|+|.||+||||||+...|...+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 378999999999999998877663
No 271
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.84 E-value=0.0037 Score=49.64 Aligned_cols=28 Identities=25% Similarity=0.260 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl 104 (177)
-+..++|.||||+||+++|+.+++.+..
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3467999999999999999999998754
No 272
>COG4639 Predicted kinase [General function prediction only]
Probab=96.84 E-value=0.0045 Score=49.65 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=25.0
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchh
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI 112 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dL 112 (177)
.-++++|+|||||||+|+.. ......++++++
T Consensus 3 ~LvvL~G~~~sGKsT~ak~n--~~~~~~lsld~~ 34 (168)
T COG4639 3 ILVVLRGASGSGKSTFAKEN--FLQNYVLSLDDL 34 (168)
T ss_pred eEEEEecCCCCchhHHHHHh--CCCcceecHHHH
Confidence 45789999999999999863 346778887664
No 273
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.84 E-value=0.0012 Score=52.47 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLE 103 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lg 103 (177)
+..|+|+||+||||+|++++|.+.+.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 44688999999999999999998764
No 274
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.83 E-value=0.0011 Score=63.58 Aligned_cols=34 Identities=18% Similarity=0.148 Sum_probs=29.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~ 110 (177)
.+..|+|.||||+|||++++.||+.++.+++.+.
T Consensus 211 ~~~giLL~GppGtGKT~laraia~~~~~~~i~i~ 244 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAKAVANEAGAYFISIN 244 (733)
T ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCeEEEEe
Confidence 4457899999999999999999999988766553
No 275
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.83 E-value=0.0035 Score=56.42 Aligned_cols=26 Identities=12% Similarity=0.218 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++..|+++||+|+||||.+..||..+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46788999999999999999999765
No 276
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.82 E-value=0.00093 Score=62.12 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~ 105 (177)
.+..|+|.||||+|||++|+.+|+.++..
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 35569999999999999999999998654
No 277
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.81 E-value=0.0068 Score=52.95 Aligned_cols=45 Identities=20% Similarity=0.211 Sum_probs=35.8
Q ss_pred CcccCCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCchhhhhc
Q 030464 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVRQD 116 (177)
Q Consensus 72 ~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~dLlr~e 116 (177)
+..+.+++.|+++|..||||||++++|-..+ .-.+|+++-.+++.
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~v 62 (366)
T KOG1532|consen 13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNV 62 (366)
T ss_pred cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcC
Confidence 5667899999999999999999999985543 24478888777664
No 278
>PLN03025 replication factor C subunit; Provisional
Probab=96.80 E-value=0.0012 Score=57.20 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.+.++|.||||+||||+|+.+|+.+
T Consensus 34 ~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 34 MPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999999986
No 279
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.80 E-value=0.0011 Score=57.57 Aligned_cols=33 Identities=27% Similarity=0.456 Sum_probs=28.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~ 109 (177)
.+-.++|.|+||+|||++++.+|+.++.+++.+
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i 74 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPFVRI 74 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEE
Confidence 445699999999999999999999998765443
No 280
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.79 E-value=0.0015 Score=63.32 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=28.0
Q ss_pred CCCe-EEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464 76 RRGV-HWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (177)
Q Consensus 76 ~~~~-~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~ 109 (177)
.+|. .++|+||||+|||++|+.||+.++.+++.+
T Consensus 485 ~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~i 519 (758)
T PRK11034 485 HKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRF 519 (758)
T ss_pred CCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEe
Confidence 4554 588999999999999999999998775543
No 281
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=96.78 E-value=0.0037 Score=49.87 Aligned_cols=38 Identities=16% Similarity=0.093 Sum_probs=29.5
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccC
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS 118 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~ 118 (177)
+|.|.+..|||++++|++||+++|+++++- +++.+...
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~ 38 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAK 38 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT-
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHH
Confidence 478899999999999999999999999997 88877554
No 282
>PLN02318 phosphoribulokinase/uridine kinase
Probab=96.78 E-value=0.0012 Score=62.65 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=30.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh-CCCeeeCchh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSI 112 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l-gl~~Is~~dL 112 (177)
..+.|.|.|++||||||+|+.|+..+ +...|++++.
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy 100 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY 100 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence 45788899999999999999999987 4568888775
No 283
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.77 E-value=0.0013 Score=58.09 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=24.1
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCC
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl 104 (177)
+.-++|.||||+||||+|+.+++.+++
T Consensus 38 ~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 38 HHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 455799999999999999999999875
No 284
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.77 E-value=0.0017 Score=49.99 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=26.6
Q ss_pred ccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.|.||+.+.+.|+||+||+.+++.||+.+
T Consensus 49 ~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 49 NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 56899999999999999999999999973
No 285
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.77 E-value=0.0019 Score=59.26 Aligned_cols=28 Identities=25% Similarity=0.201 Sum_probs=24.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl 104 (177)
.+..|++.|+||+|||++|++||+.++.
T Consensus 193 ~~~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4568999999999999999999998753
No 286
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.76 E-value=0.0078 Score=52.11 Aligned_cols=38 Identities=13% Similarity=0.025 Sum_probs=30.0
Q ss_pred ccCCCeEEEEEcCCCCCchHHHHHHHHHh-----------CCCeeeCch
Q 030464 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----------EVPRISMSS 111 (177)
Q Consensus 74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~l-----------gl~~Is~~d 111 (177)
...++..+.|.|+||||||++|.+++-.. .+.+|+..+
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 44578889999999999999999998652 455777654
No 287
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.75 E-value=0.0012 Score=51.02 Aligned_cols=27 Identities=15% Similarity=0.085 Sum_probs=17.6
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
..+..++|.|++|+|||++.+++.+.+
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999876654
No 288
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.73 E-value=0.0014 Score=60.32 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=24.6
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~ 105 (177)
+..++|.||||+||||+|+.+|+.++..
T Consensus 36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~~~ 63 (472)
T PRK14962 36 SHAYIFAGPRGTGKTTVARILAKSLNCE 63 (472)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 4558999999999999999999998763
No 289
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.72 E-value=0.0013 Score=50.45 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+..+|+|+|++|+||||+.+.|...
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcC
Confidence 34788999999999999999999874
No 290
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.71 E-value=0.0011 Score=55.01 Aligned_cols=32 Identities=31% Similarity=0.554 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCch
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~d 111 (177)
+..++|+|+||+|||++|+++... ++-++..+
T Consensus 22 ~h~lLl~GppGtGKTmlA~~l~~l--LP~l~~~e 53 (206)
T PF01078_consen 22 GHHLLLIGPPGTGKTMLARRLPSL--LPPLTEEE 53 (206)
T ss_dssp C--EEEES-CCCTHHHHHHHHHHC--S--CCEEC
T ss_pred CCCeEEECCCCCCHHHHHHHHHHh--CCCCchHH
Confidence 468999999999999999999876 44444444
No 291
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.71 E-value=0.0016 Score=62.66 Aligned_cols=38 Identities=29% Similarity=0.387 Sum_probs=29.6
Q ss_pred cCCCe-EEEEEcCCCCCchHHHHHHHHHhCCC--eeeCchh
Q 030464 75 RRRGV-HWAFIGSPRAKKHVYAEMLSKLLEVP--RISMSSI 112 (177)
Q Consensus 75 ~~~~~-~IlIiGpPGSGKSTlA~~LAk~lgl~--~Is~~dL 112 (177)
+.+|. .++|+||||+|||++|+.||+.++.. .+++.+.
T Consensus 480 ~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~ 520 (731)
T TIGR02639 480 PNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEY 520 (731)
T ss_pred CCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchh
Confidence 34555 47899999999999999999999765 4455443
No 292
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.70 E-value=0.0052 Score=58.90 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl 104 (177)
.+.-++|.|++|+||||+|+.|++.+++
T Consensus 37 LpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 37 LHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3456899999999999999999999987
No 293
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=96.69 E-value=0.0014 Score=49.37 Aligned_cols=23 Identities=9% Similarity=0.057 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCchHHHHHHHHH
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
++|+|+|+||+|||++..++...
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999764
No 294
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.68 E-value=0.0026 Score=58.42 Aligned_cols=89 Identities=13% Similarity=0.109 Sum_probs=49.9
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcc-----hH----H
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVV-----SE----D 140 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~I-----pd----e 140 (177)
..++-.++|.|+||+|||+++..++... .+.++++.+-..+.+..-..+|-.+.+....|... |+ +
T Consensus 270 ~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~ 349 (509)
T PRK09302 270 FFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGLE 349 (509)
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCHH
Confidence 3467788999999999999998886543 56677776433322211112222233344444321 11 1
Q ss_pred HHHHHHHHHHHccCCCCcceEEEeCC
Q 030464 141 IIFGLLSKRLEDGYYRGEIGFILDGL 166 (177)
Q Consensus 141 li~~Ll~~~L~~~~~~~~~G~ILDGf 166 (177)
-....+...+.+.. .+-+|||++
T Consensus 350 ~~~~~i~~~i~~~~---~~~vVIDsl 372 (509)
T PRK09302 350 DHLIIIKREIEEFK---PSRVAIDPL 372 (509)
T ss_pred HHHHHHHHHHHHcC---CCEEEEcCH
Confidence 22334445555543 457999986
No 295
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.67 E-value=0.0017 Score=58.33 Aligned_cols=43 Identities=26% Similarity=0.318 Sum_probs=33.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhC--CCee--eCchhhhhccCC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE--VPRI--SMSSIVRQDLSP 119 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lg--l~~I--s~~dLlr~el~~ 119 (177)
-+.-|+|.||||+|||.+|-.+|+.+| +|++ +-++++..++.+
T Consensus 64 aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kK 110 (450)
T COG1224 64 AGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKK 110 (450)
T ss_pred cccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccH
Confidence 456799999999999999999999997 5554 445677666554
No 296
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.67 E-value=0.0017 Score=63.11 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=28.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~ 109 (177)
++..++|+||||+||||+++.+|+.++.+++.+
T Consensus 348 ~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i 380 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQSIAKATGRKYVRM 380 (784)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 556799999999999999999999999886443
No 297
>PF13479 AAA_24: AAA domain
Probab=96.67 E-value=0.0013 Score=53.86 Aligned_cols=32 Identities=19% Similarity=0.212 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCch
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~d 111 (177)
++++++|.|+||+||||+|..+ -+.-+|+++.
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~---~k~l~id~E~ 33 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL---PKPLFIDTEN 33 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC---CCeEEEEeCC
Confidence 5789999999999999999887 2344566543
No 298
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.67 E-value=0.0039 Score=51.13 Aligned_cols=37 Identities=22% Similarity=0.224 Sum_probs=29.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVR 114 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr 114 (177)
++..++|.||+|+||||+++.|-+.. -.++|+..--|
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR 39 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTR 39 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccC
Confidence 67889999999999999999998887 34455554333
No 299
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.67 E-value=0.0031 Score=57.90 Aligned_cols=47 Identities=9% Similarity=-0.013 Sum_probs=33.2
Q ss_pred ccccCccC-cccCCCeEEEEEcCCCCCchHHHHHHHH----Hh--CCCeeeCch
Q 030464 65 VTLPDTEG-RERRRGVHWAFIGSPRAKKHVYAEMLSK----LL--EVPRISMSS 111 (177)
Q Consensus 65 ~~~~~~~~-~~~~~~~~IlIiGpPGSGKSTlA~~LAk----~l--gl~~Is~~d 111 (177)
.+.+|.-. ....++-.++|.|+||+|||++|.+++. +. .+.+|+..+
T Consensus 7 I~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE 60 (484)
T TIGR02655 7 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE 60 (484)
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 44555542 2445888899999999999999998733 22 355777764
No 300
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.66 E-value=0.0019 Score=55.12 Aligned_cols=29 Identities=17% Similarity=0.039 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCe
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPR 106 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~ 106 (177)
+..+++.||||+|||++++.+++.++..+
T Consensus 43 ~~~lll~G~~G~GKT~la~~l~~~~~~~~ 71 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVAKALCNEVGAEV 71 (316)
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCccc
Confidence 34556689999999999999999876543
No 301
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.65 E-value=0.0019 Score=62.36 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=29.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI 112 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dL 112 (177)
+...++|.||||+||||+|+.+++..+..++.+...
T Consensus 51 ~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~ 86 (725)
T PRK13341 51 RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAV 86 (725)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhh
Confidence 345789999999999999999999988776666543
No 302
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.65 E-value=0.0019 Score=52.66 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
|.+|.|+|++||||||+.+.+.+.+
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l 25 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRAL 25 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 303
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.63 E-value=0.0016 Score=47.42 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCchHHHHHHHH
Q 030464 80 HWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk 100 (177)
+|+|+|.||+||||+...|..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999986
No 304
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.63 E-value=0.0037 Score=50.62 Aligned_cols=28 Identities=14% Similarity=-0.029 Sum_probs=24.1
Q ss_pred ccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
...++..+.|.|+||+|||++|..++..
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~ 42 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVE 42 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHH
Confidence 4457788999999999999999999764
No 305
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=96.63 E-value=0.002 Score=55.80 Aligned_cols=32 Identities=19% Similarity=-0.059 Sum_probs=25.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~ 109 (177)
.+..|+|+|++||||||+++.|+ ..|+..++-
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~ 36 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALE-DLGYYCVDN 36 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHH-HcCCeEECC
Confidence 34578999999999999999996 457665543
No 306
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.0037 Score=57.43 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=29.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~ 109 (177)
...-+|+++||.|||||.+|+.||+-+++|+.=.
T Consensus 224 LeKSNvLllGPtGsGKTllaqTLAr~ldVPfaIc 257 (564)
T KOG0745|consen 224 LEKSNVLLLGPTGSGKTLLAQTLARVLDVPFAIC 257 (564)
T ss_pred eecccEEEECCCCCchhHHHHHHHHHhCCCeEEe
Confidence 4567899999999999999999999999996544
No 307
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=96.61 E-value=0.0019 Score=48.38 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCchHHHHHHHHH
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+|+|+|.||+|||++..++...
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999764
No 308
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.61 E-value=0.0012 Score=56.35 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=18.8
Q ss_pred EEEEcCCCCCchHHHHHHHHHh
Q 030464 81 WAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 81 IlIiGpPGSGKSTlA~~LAk~l 102 (177)
-+|+|||||||||.|--..+-+
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fl 26 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFL 26 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHH
Confidence 5799999999999998876654
No 309
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.61 E-value=0.0022 Score=57.51 Aligned_cols=37 Identities=22% Similarity=0.250 Sum_probs=28.1
Q ss_pred cccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 66 TLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 66 ~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
+.+.....+..++-.++|+||+|+||||++.+|+..+
T Consensus 125 ~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 125 PVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred hhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3333343445677789999999999999999998753
No 310
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.60 E-value=0.0038 Score=53.57 Aligned_cols=27 Identities=19% Similarity=0.144 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
...++++|.||||+||||.+..||..+
T Consensus 46 gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 46 GNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred CCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 466899999999999999999999865
No 311
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.59 E-value=0.0027 Score=51.04 Aligned_cols=38 Identities=21% Similarity=0.200 Sum_probs=30.2
Q ss_pred ccCCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCch
Q 030464 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSS 111 (177)
Q Consensus 74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~d 111 (177)
...++..+.|.|+||||||++|.+++... .+.+|+..+
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 44578889999999999999999988643 366777754
No 312
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.59 E-value=0.0017 Score=52.37 Aligned_cols=27 Identities=15% Similarity=-0.108 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lg 103 (177)
+++.+.|+|++||||||+++.|...+.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 566788999999999999999987764
No 313
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.58 E-value=0.0018 Score=61.30 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lg 103 (177)
+...++++||||+|||++++.|++.+.
T Consensus 102 ~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 102 KKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred CCceEEEecCCCCCchHHHHHHHHHHH
Confidence 556889999999999999999999764
No 314
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.58 E-value=0.0057 Score=54.51 Aligned_cols=36 Identities=11% Similarity=0.082 Sum_probs=27.9
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh-----C--CCeeeCchhhhh
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLL-----E--VPRISMSSIVRQ 115 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~l-----g--l~~Is~~dLlr~ 115 (177)
.++|.|+||+|||++++.++..+ + +.+++..++...
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~ 180 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTND 180 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHH
Confidence 47899999999999999998764 3 457777665543
No 315
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=96.57 E-value=0.0018 Score=48.75 Aligned_cols=23 Identities=13% Similarity=0.125 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCchHHHHHHHHH
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
++|+|+|+|||||||+.+++...
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999653
No 316
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=96.57 E-value=0.0021 Score=46.86 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.+|+|+|.+||||||+..+|....
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999997654
No 317
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=96.57 E-value=0.0018 Score=47.79 Aligned_cols=23 Identities=13% Similarity=0.057 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCchHHHHHHHHH
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
++|+++|+||+||||+..++...
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~ 23 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDG 23 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999988543
No 318
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.57 E-value=0.002 Score=59.79 Aligned_cols=30 Identities=13% Similarity=0.163 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCe
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPR 106 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~ 106 (177)
.+..++|.||||+||||+|+.+|+.+++.+
T Consensus 42 i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~ 71 (507)
T PRK06645 42 LAGGYLLTGIRGVGKTTSARIIAKAVNCSA 71 (507)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 346799999999999999999999998754
No 319
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=96.57 E-value=0.0023 Score=55.95 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=33.2
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeee---Cchhhh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS---MSSIVR 114 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is---~~dLlr 114 (177)
+++..|+|-|+-|+|||++|+.||+++|+.|+- +++++-
T Consensus 69 enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyv 110 (393)
T KOG3877|consen 69 ENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYV 110 (393)
T ss_pred ccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceee
Confidence 577889999999999999999999999988764 665543
No 320
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.56 E-value=0.0036 Score=55.08 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=31.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVR 114 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr 114 (177)
-.++.+|.||||.|||+.|..+|..++.+++--..++.
T Consensus 56 ~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ 93 (346)
T KOG0989|consen 56 ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLE 93 (346)
T ss_pred CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhh
Confidence 45789999999999999999999998886666555554
No 321
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=96.55 E-value=0.0021 Score=48.81 Aligned_cols=21 Identities=14% Similarity=0.170 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCchHHHHHHHH
Q 030464 80 HWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk 100 (177)
+|+|+|+||+||||+..++..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~ 22 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQ 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999999975
No 322
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.002 Score=58.40 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=28.6
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCeeeCch
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~d 111 (177)
-|++.||||+|||-+|+++|-+-|..+|++..
T Consensus 247 gvLm~GPPGTGKTlLAKAvATEc~tTFFNVSs 278 (491)
T KOG0738|consen 247 GVLMVGPPGTGKTLLAKAVATECGTTFFNVSS 278 (491)
T ss_pred eeeeeCCCCCcHHHHHHHHHHhhcCeEEEech
Confidence 57899999999999999999999988877764
No 323
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.55 E-value=0.0024 Score=55.94 Aligned_cols=27 Identities=11% Similarity=0.081 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.++..|.|+||+|+||||++..||..+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 356788999999999999999998876
No 324
>PRK10867 signal recognition particle protein; Provisional
Probab=96.54 E-value=0.014 Score=53.35 Aligned_cols=35 Identities=23% Similarity=0.217 Sum_probs=26.2
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh----C--CCeeeCc
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL----E--VPRISMS 110 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l----g--l~~Is~~ 110 (177)
.++..|+|+|++||||||.+..||..+ | +..++.+
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D 138 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD 138 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 356788999999999999888887643 3 3456654
No 325
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.54 E-value=0.0054 Score=50.60 Aligned_cols=35 Identities=14% Similarity=0.185 Sum_probs=27.2
Q ss_pred EEEEcCCCCCchHHHHHHHHHh-------CCCeeeCchhhhh
Q 030464 81 WAFIGSPRAKKHVYAEMLSKLL-------EVPRISMSSIVRQ 115 (177)
Q Consensus 81 IlIiGpPGSGKSTlA~~LAk~l-------gl~~Is~~dLlr~ 115 (177)
++|.|++|+|||++.+.++..+ .+.+++..++.+.
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~ 78 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIRE 78 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHH
Confidence 7899999999999999997653 3457777676654
No 326
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.54 E-value=0.0022 Score=57.68 Aligned_cols=41 Identities=29% Similarity=0.406 Sum_probs=29.2
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhC--CCeeeC--chhhhhccC
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLE--VPRISM--SSIVRQDLS 118 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lg--l~~Is~--~dLlr~el~ 118 (177)
+..|+|.||||+|||.+|-.+|+.+| +|++.+ .+++..+++
T Consensus 50 Gr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~k 94 (398)
T PF06068_consen 50 GRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVK 94 (398)
T ss_dssp T-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccC
Confidence 56799999999999999999999997 665544 456655544
No 327
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.53 E-value=0.0048 Score=55.27 Aligned_cols=87 Identities=14% Similarity=0.027 Sum_probs=47.8
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccC
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY 154 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~ 154 (177)
.|+|.||+||||||+.+.|.+.+ +...+++.|=++-.+.....+....+. +-|... +...++++..|.+.
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~--evg~~~--~~~~~~l~~aLR~~- 225 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQS--QIGRDV--DSFANGIRLALRRA- 225 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeeccccc--ccCCCc--cCHHHHHHHhhccC-
Confidence 58899999999999999997765 245677766544333221111000000 111111 12345555555543
Q ss_pred CCCcceEEEeCCCCCHHHHHh
Q 030464 155 YRGEIGFILDGLPRSRIQATI 175 (177)
Q Consensus 155 ~~~~~G~ILDGfPrt~~QAe~ 175 (177)
-.+|+=|.=|+.+-++.
T Consensus 226 ----PD~I~vGEiRd~et~~~ 242 (372)
T TIGR02525 226 ----PKIIGVGEIRDLETFQA 242 (372)
T ss_pred ----CCEEeeCCCCCHHHHHH
Confidence 25666666677765553
No 328
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=96.53 E-value=0.0021 Score=48.87 Aligned_cols=23 Identities=9% Similarity=0.059 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCchHHHHHHHHH
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
++|+|+|++|+|||++..+|...
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~ 23 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTG 23 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999754
No 329
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.52 E-value=0.0071 Score=53.11 Aligned_cols=30 Identities=23% Similarity=0.228 Sum_probs=26.0
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~ 105 (177)
..++-++|.||+|+||+++|..+|+.+.+.
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~ 49 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCE 49 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCC
Confidence 345669999999999999999999998764
No 330
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.52 E-value=0.009 Score=58.20 Aligned_cols=28 Identities=18% Similarity=0.319 Sum_probs=24.9
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~ 105 (177)
+.-++|.|++|+||||+++.|++.+++.
T Consensus 38 ~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 38 HHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 4567899999999999999999999864
No 331
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.51 E-value=0.0023 Score=60.86 Aligned_cols=32 Identities=22% Similarity=0.350 Sum_probs=28.7
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~ 110 (177)
..|+|.||||+|||++++.+++..+++++.+.
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f~~is 217 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTIS 217 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 44999999999999999999999999877664
No 332
>PRK14974 cell division protein FtsY; Provisional
Probab=96.51 E-value=0.0024 Score=56.39 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++..|+|+|+||+||||++..||..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999888887754
No 333
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=96.50 E-value=0.0025 Score=48.04 Aligned_cols=22 Identities=14% Similarity=0.129 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCchHHHHHHHH
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk 100 (177)
.+|+|+|.||+|||+++.++..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~ 23 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQ 23 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999875
No 334
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.49 E-value=0.0033 Score=51.21 Aligned_cols=28 Identities=14% Similarity=0.054 Sum_probs=24.2
Q ss_pred ccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
...++..+.|.|+||||||++|..++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567888999999999999999999743
No 335
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.49 E-value=0.006 Score=57.94 Aligned_cols=35 Identities=11% Similarity=0.113 Sum_probs=28.8
Q ss_pred EEEEcCCCCCchHHHHHHHHHh-------CCCeeeCchhhhh
Q 030464 81 WAFIGSPRAKKHVYAEMLSKLL-------EVPRISMSSIVRQ 115 (177)
Q Consensus 81 IlIiGpPGSGKSTlA~~LAk~l-------gl~~Is~~dLlr~ 115 (177)
++|.|++|+|||++++.++... .+.+++..+++.+
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~e 358 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNE 358 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHH
Confidence 7899999999999999998864 3468888777654
No 336
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.49 E-value=0.017 Score=52.70 Aligned_cols=35 Identities=14% Similarity=0.111 Sum_probs=26.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh----C--CCeeeCc
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL----E--VPRISMS 110 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l----g--l~~Is~~ 110 (177)
.++..|+++|+|||||||+|..||..+ | +..++.+
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D 137 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACD 137 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 356788999999999999988887763 2 4456664
No 337
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.48 E-value=0.0024 Score=59.00 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=25.1
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~ 105 (177)
+.-++|.||||+||||+|+.+|+.++..
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 4558999999999999999999998874
No 338
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.47 E-value=0.0028 Score=55.92 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.++.+|.|+|+|||||||++..|...+
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 467889999999999999999887655
No 339
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.46 E-value=0.002 Score=52.80 Aligned_cols=39 Identities=15% Similarity=0.212 Sum_probs=33.2
Q ss_pred CCccccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 63 RSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.-.+.++..+.+-.++-.|.|+||+||||||+-+.+|..
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhc
Confidence 346677777777788889999999999999999999874
No 340
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=96.46 E-value=0.0022 Score=48.55 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCchHHHHHHHH
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk 100 (177)
.+|+|+|+||+||||+..+|..
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~ 22 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVE 22 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999999864
No 341
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=96.46 E-value=0.0019 Score=54.16 Aligned_cols=35 Identities=17% Similarity=0.098 Sum_probs=27.7
Q ss_pred cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++.......++-++.|+|+.||||||+.+.|+..+
T Consensus 27 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 27 LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 44444455678889999999999999999998653
No 342
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.45 E-value=0.0033 Score=53.84 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=27.2
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh----C---CCeeeCc
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL----E---VPRISMS 110 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l----g---l~~Is~~ 110 (177)
.++..|+|+||+|+||||++..|+..+ | +.+|+++
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D 233 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTD 233 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 356788999999999999999998754 2 3466664
No 343
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.45 E-value=0.0056 Score=49.89 Aligned_cols=40 Identities=15% Similarity=0.012 Sum_probs=30.0
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCchhhh
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVR 114 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~dLlr 114 (177)
..++-.++|.|+||+|||++|..++... | +.++++.+-..
T Consensus 13 i~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~ 57 (224)
T TIGR03880 13 FPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREE 57 (224)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHH
Confidence 3467788999999999999999887542 3 55777765433
No 344
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.45 E-value=0.0019 Score=52.27 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=20.2
Q ss_pred EEEEcCCCCCchHHHHHHHHHh
Q 030464 81 WAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 81 IlIiGpPGSGKSTlA~~LAk~l 102 (177)
|+|.|+|||||||..+.+.+..
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 5899999999999999998885
No 345
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.0021 Score=60.39 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=30.0
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~ 110 (177)
|+-|+++||||.|||-+|+++|-+-|++++.+.
T Consensus 337 PKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~s 369 (752)
T KOG0734|consen 337 PKGVLLVGPPGTGKTLLARAVAGEAGVPFFYAS 369 (752)
T ss_pred CCceEEeCCCCCchhHHHHHhhcccCCCeEecc
Confidence 456899999999999999999999999988775
No 346
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=96.45 E-value=0.0023 Score=48.70 Aligned_cols=23 Identities=9% Similarity=0.105 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCchHHHHHHHHH
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+|+|+|+|||||||+..++...
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999988653
No 347
>PRK05642 DNA replication initiation factor; Validated
Probab=96.44 E-value=0.0022 Score=53.35 Aligned_cols=36 Identities=3% Similarity=-0.025 Sum_probs=28.5
Q ss_pred eEEEEEcCCCCCchHHHHHHHHH-----hCCCeeeCchhhh
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKL-----LEVPRISMSSIVR 114 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~-----lgl~~Is~~dLlr 114 (177)
..++|.|++|+|||++++.++.. ..+.+++.++++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~ 86 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLD 86 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHh
Confidence 44789999999999999998753 3566888877664
No 348
>PRK07933 thymidylate kinase; Validated
Probab=96.43 E-value=0.0029 Score=51.99 Aligned_cols=25 Identities=32% Similarity=0.280 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhC
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLE 103 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lg 103 (177)
+-|+|-|.-||||||+++.|++.+.
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~ 25 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALE 25 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3588999999999999999999873
No 349
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.43 E-value=0.0027 Score=50.72 Aligned_cols=27 Identities=11% Similarity=0.111 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
..+..|+|+|++||||||+.+.|...+
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 456789999999999999999998765
No 350
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.42 E-value=0.0039 Score=50.46 Aligned_cols=37 Identities=24% Similarity=0.201 Sum_probs=28.9
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCch
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSS 111 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~d 111 (177)
..++-.+.|.|+||||||++|..++... .+.+++.+.
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~ 57 (218)
T cd01394 16 VERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG 57 (218)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 3577889999999999999999998754 344676543
No 351
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.40 E-value=0.0027 Score=54.72 Aligned_cols=59 Identities=10% Similarity=0.103 Sum_probs=38.4
Q ss_pred cccccccccc----cccccccCCCCccccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 44 NYYSYYQAES----DSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 44 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++|..++... .++|.+..-...+.++.......++-.+.|+|+.||||||+.+.|+..+
T Consensus 33 ~~~~~~~~~~~~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~ 95 (305)
T PRK14264 33 DEWTDYEFDGDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMN 95 (305)
T ss_pred hcccccccCCCceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4666666555 2344432111123444445555688899999999999999999998653
No 352
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=96.40 E-value=0.0023 Score=47.77 Aligned_cols=21 Identities=14% Similarity=0.139 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCchHHHHHHHH
Q 030464 80 HWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk 100 (177)
+|+|+|++|||||++..++..
T Consensus 1 ki~i~G~~~~GKTsli~~l~~ 21 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVK 21 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999865
No 353
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=96.40 E-value=0.0027 Score=47.74 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
++++|+|+|.||+||||+..+|.+.
T Consensus 1 ~~~~i~i~G~~~~GKstli~~l~~~ 25 (174)
T cd01895 1 DPIRIAIIGRPNVGKSSLVNALLGE 25 (174)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHhCc
Confidence 3678999999999999999999664
No 354
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.40 E-value=0.0028 Score=58.78 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl 104 (177)
.+.-|+|.||||+||||+|+.+|+.+.+
T Consensus 35 l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 35 LGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3456799999999999999999998864
No 355
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.39 E-value=0.0032 Score=48.72 Aligned_cols=24 Identities=17% Similarity=0.122 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++|.|+|+.+|||||+++.|.+.+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999997765
No 356
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=96.38 E-value=0.011 Score=49.31 Aligned_cols=38 Identities=13% Similarity=0.194 Sum_probs=31.3
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh-CCCeeeCchhhhh
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQ 115 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~l-gl~~Is~~dLlr~ 115 (177)
-+.|-|-|...|||||+|+.|..-| |...|+=+|...-
T Consensus 4 ~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp 42 (225)
T KOG3308|consen 4 TLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKP 42 (225)
T ss_pred EEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCc
Confidence 3556677888899999999999987 6788998887764
No 357
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=96.38 E-value=0.015 Score=55.53 Aligned_cols=31 Identities=13% Similarity=0.216 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCee
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~I 107 (177)
..+.|+++|.||+||||+|++|++.++...+
T Consensus 214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~ 244 (664)
T PTZ00322 214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGL 244 (664)
T ss_pred cceeEEecccCCCChhHHHHHHHHHHHhcCC
Confidence 4567899999999999999999999854433
No 358
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.38 E-value=0.0039 Score=60.18 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=29.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~ 110 (177)
..++.++.||||.||||+|..+|+.-|+.++.+.
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaGYsVvEIN 358 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEIN 358 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcCceEEEec
Confidence 3355678899999999999999999999988875
No 359
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.0025 Score=58.26 Aligned_cols=29 Identities=14% Similarity=0.356 Sum_probs=26.4
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (177)
Q Consensus 81 IlIiGpPGSGKSTlA~~LAk~lgl~~Is~ 109 (177)
+++.||||+|||++..++|..+++.+.++
T Consensus 238 YLLYGPPGTGKSS~IaAmAn~L~ydIydL 266 (457)
T KOG0743|consen 238 YLLYGPPGTGKSSFIAAMANYLNYDIYDL 266 (457)
T ss_pred ceeeCCCCCCHHHHHHHHHhhcCCceEEe
Confidence 78999999999999999999998877765
No 360
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.38 E-value=0.0029 Score=59.30 Aligned_cols=31 Identities=26% Similarity=0.204 Sum_probs=27.2
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~ 110 (177)
..+|+||+||||||..+.|++.+|+.++...
T Consensus 112 iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 112 ILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred EEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 4568899999999999999999999877654
No 361
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.38 E-value=0.0037 Score=61.35 Aligned_cols=41 Identities=24% Similarity=0.359 Sum_probs=31.5
Q ss_pred ccCCCe-EEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCchhhh
Q 030464 74 ERRRGV-HWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVR 114 (177)
Q Consensus 74 ~~~~~~-~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~dLlr 114 (177)
.|.+|. .++|+||||+|||.+|+.||+.+ .+..++|.++..
T Consensus 591 ~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~ 637 (852)
T TIGR03345 591 DPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQE 637 (852)
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhh
Confidence 355666 47899999999999999999987 345677666543
No 362
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.36 E-value=0.0033 Score=56.22 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=24.9
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~ 105 (177)
+.-++|.||||+||||+|+.+|+.+.+.
T Consensus 38 ~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 38 GHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4458999999999999999999998764
No 363
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.35 E-value=0.0031 Score=53.44 Aligned_cols=30 Identities=13% Similarity=0.273 Sum_probs=26.4
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~ 105 (177)
.++-+++|+|++|+||||+++.+++.....
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~ 43 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITKN 43 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccccc
Confidence 588899999999999999999999876543
No 364
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=96.34 E-value=0.0033 Score=46.66 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHH
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
+.+|+++|++|+||||+..+|...
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~ 24 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGR 24 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCC
Confidence 358999999999999999998754
No 365
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.34 E-value=0.0025 Score=53.24 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
.+..++|.|+||+||||+|+.|+.
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCC
Confidence 367799999999999999999974
No 366
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.32 E-value=0.0027 Score=47.25 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.++-++.|+|+.||||||+.+.|+..+
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEccCCCccccceeeecccc
Confidence 466789999999999999999997754
No 367
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.31 E-value=0.017 Score=52.09 Aligned_cols=29 Identities=24% Similarity=0.466 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~ 105 (177)
.+.-++|.||||+||+++|+.+|+.+.+.
T Consensus 35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 35 MTHAWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 46679999999999999999999988664
No 368
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.31 E-value=0.0035 Score=58.08 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~ 105 (177)
-+.-++|.||||+||||+|+.+|+.+++.
T Consensus 34 i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 34 IPQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred CCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 34579999999999999999999987653
No 369
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=96.30 E-value=0.004 Score=47.83 Aligned_cols=25 Identities=16% Similarity=0.040 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
...+|+|+|+||+|||++..++...
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~ 26 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSED 26 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhC
Confidence 3478999999999999999999754
No 370
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=96.30 E-value=0.004 Score=46.99 Aligned_cols=24 Identities=8% Similarity=0.058 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHH
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
..+|+|+|+||+|||++..++...
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~ 25 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQS 25 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhC
Confidence 468999999999999999988654
No 371
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=96.30 E-value=0.0037 Score=48.90 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
.+..+|+|+|++||||||+..++..
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 5678899999999999999999975
No 372
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=96.30 E-value=0.0034 Score=47.17 Aligned_cols=21 Identities=10% Similarity=0.048 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCchHHHHHHHH
Q 030464 80 HWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk 100 (177)
+|+++|+||+||||+..++..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~ 22 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMY 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999999864
No 373
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.30 E-value=0.0093 Score=50.37 Aligned_cols=25 Identities=32% Similarity=0.302 Sum_probs=23.0
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCC
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLLEV 104 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~lgl 104 (177)
-++|.||||+||+|.|..||+.+..
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~ 50 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLC 50 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhC
Confidence 5999999999999999999998864
No 374
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.30 E-value=0.0041 Score=53.54 Aligned_cols=28 Identities=25% Similarity=0.256 Sum_probs=24.0
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
..++..|.|+|+|||||||++..|+..+
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3467889999999999999999988754
No 375
>PRK05973 replicative DNA helicase; Provisional
Probab=96.30 E-value=0.0031 Score=53.20 Aligned_cols=48 Identities=8% Similarity=-0.044 Sum_probs=33.2
Q ss_pred CCccccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCch
Q 030464 63 RSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSS 111 (177)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~d 111 (177)
++.|.-.-.| ...++-.++|.|+||+|||++|..++... | +.++++.+
T Consensus 50 ~~~p~~~l~G-Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEe 102 (237)
T PRK05973 50 ATTPAEELFS-QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEY 102 (237)
T ss_pred CCCCHHHhcC-CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeC
Confidence 4455333333 34577789999999999999999886643 4 44777653
No 376
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.29 E-value=0.0037 Score=60.14 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
...+++++||||+|||++++.||+++
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999999987
No 377
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.27 E-value=0.0052 Score=41.89 Aligned_cols=31 Identities=16% Similarity=0.113 Sum_probs=25.5
Q ss_pred EEEEcCCCCCchHHHHHHHHHh---CCCeeeCch
Q 030464 81 WAFIGSPRAKKHVYAEMLSKLL---EVPRISMSS 111 (177)
Q Consensus 81 IlIiGpPGSGKSTlA~~LAk~l---gl~~Is~~d 111 (177)
|++.|.+|+||||++..|+..+ |...+-++|
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~d 35 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLIDD 35 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEECC
Confidence 6888999999999999999886 666665554
No 378
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=96.27 E-value=0.0058 Score=48.21 Aligned_cols=33 Identities=18% Similarity=0.064 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~ 110 (177)
.+.-|+|+|++|+||||+|..|.++ |..+++-+
T Consensus 13 ~g~gvLi~G~sG~GKStlal~L~~~-g~~lvaDD 45 (149)
T cd01918 13 GGIGVLITGPSGIGKSELALELIKR-GHRLVADD 45 (149)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCeEEECC
Confidence 4677999999999999999988765 67777643
No 379
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.27 E-value=0.0048 Score=53.40 Aligned_cols=26 Identities=12% Similarity=0.144 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.+.+|+|.|++||||||+.+.|...+
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccC
Confidence 56799999999999999999998765
No 380
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.26 E-value=0.0071 Score=53.12 Aligned_cols=35 Identities=9% Similarity=-0.003 Sum_probs=26.3
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhC----CCeeeCchh
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLE----VPRISMSSI 112 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lg----l~~Is~~dL 112 (177)
.-.|+|.||+||||||+.+.|...+. ..++.+.+-
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp 160 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDP 160 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCC
Confidence 45689999999999999999887553 335555543
No 381
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=96.26 E-value=0.0039 Score=48.26 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCchHHHHHHHHH
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+|+|+|.||+||||+..++...
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~ 24 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEG 24 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999999754
No 382
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.26 E-value=0.0098 Score=54.32 Aligned_cols=35 Identities=9% Similarity=0.069 Sum_probs=26.6
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCchhhh
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVR 114 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~dLlr 114 (177)
-++|.|+||+|||++++.++..+ .+.+++..++..
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~ 182 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTE 182 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHH
Confidence 37899999999999999999864 344666655443
No 383
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.26 E-value=0.004 Score=58.36 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=23.8
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCC
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl 104 (177)
+.-++|.||||+||||+|+.+|+.+++
T Consensus 38 ~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 38 HHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 345789999999999999999998875
No 384
>PRK13768 GTPase; Provisional
Probab=96.25 E-value=0.0041 Score=52.42 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCc
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMS 110 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~ 110 (177)
+..|+|.|++|+||||++..++..+ | +.+|+.+
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D 39 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLD 39 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECC
Confidence 4578899999999999999887765 3 3355554
No 385
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=96.25 E-value=0.0042 Score=47.96 Aligned_cols=23 Identities=13% Similarity=0.079 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCCchHHHHHHHH
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
-.+|+|+|++|+|||++..++..
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~ 24 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCA 24 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999865
No 386
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.25 E-value=0.0034 Score=57.97 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
-|+|-|+||+||||+|++||+-|
T Consensus 265 GILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 265 GILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred ceEEecCCCCChhHHHHHHHHHH
Confidence 48999999999999999999976
No 387
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.24 E-value=0.0042 Score=56.73 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.+|..|+|+|+||+||||++..||..+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 467789999999999999999998866
No 388
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.24 E-value=0.0038 Score=49.47 Aligned_cols=23 Identities=17% Similarity=0.099 Sum_probs=16.7
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
..+|.||||+|||++...+...+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 57889999999997766666654
No 389
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.23 E-value=0.0039 Score=61.52 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=24.9
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~ 105 (177)
+.-++|.||||+||||+|+.||+.+++.
T Consensus 38 ~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 38 HHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 4557999999999999999999998775
No 390
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.22 E-value=0.015 Score=50.11 Aligned_cols=29 Identities=14% Similarity=0.090 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCC
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl 104 (177)
..++-++|.||+|+||+++|+.+++.+.+
T Consensus 24 ~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c 52 (313)
T PRK05564 24 RFSHAHIIVGEDGIGKSLLAKEIALKILG 52 (313)
T ss_pred CCCceEEeECCCCCCHHHHHHHHHHHHcC
Confidence 34567899999999999999999998743
No 391
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.22 E-value=0.0043 Score=57.76 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=24.8
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~ 105 (177)
+.-++|.||||+||||+|+.+|+.+++.
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (527)
T PRK14969 38 HHAYLFTGTRGVGKTTLARILAKSLNCE 65 (527)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4557999999999999999999999764
No 392
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=96.22 E-value=0.0035 Score=47.65 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
+|+|+|++|+||||+..+|...+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~ 23 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLF 23 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhc
Confidence 58999999999999999997654
No 393
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=96.22 E-value=0.0041 Score=47.68 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCchHHHHHHHH
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk 100 (177)
++|+|+|.+|+||||+..++..
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~ 22 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLM 22 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999988864
No 394
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.21 E-value=0.0039 Score=49.49 Aligned_cols=34 Identities=26% Similarity=0.238 Sum_probs=26.7
Q ss_pred CccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 69 DTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 69 ~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
+.......++-++.|+|+.||||||+.+.|+..+
T Consensus 9 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 9 KGLNFAAERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3334445677789999999999999999997643
No 395
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=96.21 E-value=0.0048 Score=54.69 Aligned_cols=30 Identities=20% Similarity=0.148 Sum_probs=26.3
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~ 105 (177)
.++..|.|+|++||||||+++.|.+.+.-.
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~~~ 32 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRRLSER 32 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHhhC
Confidence 478899999999999999999999887633
No 396
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.21 E-value=0.012 Score=57.62 Aligned_cols=29 Identities=21% Similarity=0.253 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~ 105 (177)
.++-++|.|++|+||||+|+.|++.+++.
T Consensus 36 i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 36 INHAYLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 44558999999999999999999999763
No 397
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.21 E-value=0.0042 Score=57.63 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~ 105 (177)
.+.-++|.||||+||||+|+.+|+.+++.
T Consensus 37 l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 37 LHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34568999999999999999999999764
No 398
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.21 E-value=0.0033 Score=50.64 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=24.1
Q ss_pred CcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 72 ~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.....++ ++.|+|+.||||||+.+.|+..+
T Consensus 20 s~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 20 SLTLGPG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred eEEEcCC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 3333457 89999999999999999998643
No 399
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.21 E-value=0.0045 Score=59.39 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~ 105 (177)
+.-++|.||||+||||+|+.+|+.+++.
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~LnC~ 64 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCLNCE 64 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4678999999999999999999999874
No 400
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=96.20 E-value=0.0043 Score=47.69 Aligned_cols=23 Identities=9% Similarity=0.076 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCchHHHHHHHHH
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+|+|+|.||+|||++..++.+.
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~ 24 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQN 24 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999998754
No 401
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=96.20 E-value=0.0042 Score=46.92 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCchHHHHHHHHH
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+|+|+|++|+|||++..++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKN 24 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999998764
No 402
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.20 E-value=0.0048 Score=52.18 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
+.++|.|+||+||||+++.+++.+
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 358999999999999999999986
No 403
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.20 E-value=0.0052 Score=53.25 Aligned_cols=38 Identities=11% Similarity=0.069 Sum_probs=29.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCchhhh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVR 114 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~dLlr 114 (177)
....|+|.|++||||||+++.|.+.. +...+.+.|-.+
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~E 173 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRE 173 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchh
Confidence 45689999999999999999998775 344566665433
No 404
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=96.18 E-value=0.0043 Score=46.39 Aligned_cols=23 Identities=13% Similarity=0.098 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCchHHHHHHHHH
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+|+|+|++|+||||+..++...
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~ 23 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVEN 23 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 37999999999999999988754
No 405
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.18 E-value=0.0044 Score=49.84 Aligned_cols=30 Identities=17% Similarity=0.129 Sum_probs=25.4
Q ss_pred cccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 73 ~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
....++-++.|+|+.||||||+.+.|+..+
T Consensus 22 l~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 22 ISISAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344677889999999999999999998754
No 406
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.18 E-value=0.0052 Score=59.93 Aligned_cols=39 Identities=21% Similarity=0.354 Sum_probs=29.6
Q ss_pred ccCCCe-EEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCchh
Q 030464 74 ERRRGV-HWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSI 112 (177)
Q Consensus 74 ~~~~~~-~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~dL 112 (177)
.+.+|+ .++|+||||+|||++|+.||+.+ .+..+++++.
T Consensus 534 ~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~ 578 (821)
T CHL00095 534 NPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEY 578 (821)
T ss_pred CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhc
Confidence 345665 46899999999999999999986 2445666554
No 407
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.17 E-value=0.0054 Score=48.55 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhC
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLE 103 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lg 103 (177)
..|.|+|++||||||++++|.+.+.
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~ 26 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALS 26 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999998863
No 408
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.17 E-value=0.0047 Score=53.06 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.+..+|-|+||||+||||+...|.+.+
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~ 53 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIREL 53 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHH
Confidence 467899999999999999999998765
No 409
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.17 E-value=0.005 Score=58.33 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=32.2
Q ss_pred CCccccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 63 RSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.++||.+----.-..|.++.|+||||+||||+.+.|...+
T Consensus 54 lhVPmvdrtp~d~PPPfIvavvGPpGtGKsTLirSlVrr~ 93 (1077)
T COG5192 54 LHVPMVDRTPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRF 93 (1077)
T ss_pred cccccccCCcccCCCCeEEEeecCCCCChhHHHHHHHHHH
Confidence 5688887655554566777799999999999999998876
No 410
>PRK04296 thymidine kinase; Provisional
Probab=96.16 E-value=0.0048 Score=49.68 Aligned_cols=25 Identities=8% Similarity=-0.193 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
+..++++|+||+||||++..++..+
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHH
Confidence 3568899999999999999988875
No 411
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.16 E-value=0.0045 Score=49.75 Aligned_cols=35 Identities=14% Similarity=0.110 Sum_probs=27.4
Q ss_pred cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++.......++-++.|+|+.||||||+.+.|+-.+
T Consensus 16 l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred ecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33334445678889999999999999999998653
No 412
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.15 E-value=0.0054 Score=49.71 Aligned_cols=27 Identities=30% Similarity=0.284 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lg 103 (177)
..++|.|+|++||||||+.+++.+.++
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 577889999999999999999988754
No 413
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.15 E-value=0.0053 Score=45.90 Aligned_cols=24 Identities=21% Similarity=0.004 Sum_probs=21.0
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLS 99 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LA 99 (177)
..+..++|+||+||||||+++.+.
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHhh
Confidence 345778999999999999999986
No 414
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.14 E-value=0.0045 Score=50.12 Aligned_cols=35 Identities=23% Similarity=0.251 Sum_probs=27.8
Q ss_pred cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
+........++-.+.|+|+.||||||+.+.|+..+
T Consensus 18 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44444455677789999999999999999998653
No 415
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.14 E-value=0.0063 Score=52.29 Aligned_cols=38 Identities=11% Similarity=-0.006 Sum_probs=29.6
Q ss_pred ccCCCeEEEEEcCCCCCchHHHHHHHHHh-----------CCCeeeCch
Q 030464 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----------EVPRISMSS 111 (177)
Q Consensus 74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~l-----------gl~~Is~~d 111 (177)
....+..+.|.|+||||||++|-.++-.. .+.+|+..+
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 34567888999999999999999998652 345677655
No 416
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.14 E-value=0.004 Score=50.36 Aligned_cols=35 Identities=20% Similarity=0.091 Sum_probs=27.5
Q ss_pred cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++.......++-.+.|+|+.||||||+.+.|+..+
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred eeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 33444455678899999999999999999997653
No 417
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.0048 Score=59.94 Aligned_cols=44 Identities=14% Similarity=0.226 Sum_probs=37.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc--hhhhhccCC
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVRQDLSP 119 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~--dLlr~el~~ 119 (177)
.+.--|++.||||+|||-+|+++|-++++.++|+. +|+...+.+
T Consensus 703 rkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGq 748 (953)
T KOG0736|consen 703 RKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQ 748 (953)
T ss_pred cccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcc
Confidence 34567999999999999999999999999999997 577766543
No 418
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.13 E-value=0.0049 Score=49.83 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=27.4
Q ss_pred cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++.......++-.+.|+|+.||||||+.+.|+..+
T Consensus 20 l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 20 LKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 33333444677889999999999999999998654
No 419
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.13 E-value=0.0038 Score=56.81 Aligned_cols=36 Identities=11% Similarity=0.112 Sum_probs=28.7
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh-------CCCeeeCchhhhh
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLL-------EVPRISMSSIVRQ 115 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~l-------gl~~Is~~dLlr~ 115 (177)
.++|.|+||+|||++++.++..+ .+.+++..+++.+
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~ 174 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLND 174 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH
Confidence 38999999999999999998864 3457777766554
No 420
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.12 E-value=0.0049 Score=51.95 Aligned_cols=33 Identities=15% Similarity=0.138 Sum_probs=25.9
Q ss_pred ccCccCcccCCCeEEEEEcCCCCCchHHHHHHH
Q 030464 67 LPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLS 99 (177)
Q Consensus 67 ~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LA 99 (177)
.+....-...++-.++|+||+||||||+.+-|.
T Consensus 17 VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 17 VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred EecCcceeEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 344444455688889999999999999998873
No 421
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.12 E-value=0.0042 Score=49.68 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=27.4
Q ss_pred cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++.......++-++.|+|+.||||||+.+.|+..+
T Consensus 14 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 14 LDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 33334444677889999999999999999998654
No 422
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.11 E-value=0.0045 Score=49.85 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=25.9
Q ss_pred CcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 72 ~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.....++-.+.|+|+.||||||+.+.|+..+
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 20 NLDIADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3344677889999999999999999998754
No 423
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=96.11 E-value=0.0053 Score=48.50 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=23.2
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHH
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
+.+..+|+|+|++|+||||+..++..
T Consensus 14 ~~~~~~i~ivG~~~~GKTsli~~l~~ 39 (184)
T smart00178 14 WNKHAKILFLGLDNAGKTTLLHMLKN 39 (184)
T ss_pred ccccCEEEEECCCCCCHHHHHHHHhc
Confidence 35778999999999999999999975
No 424
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.11 E-value=0.0057 Score=60.06 Aligned_cols=40 Identities=23% Similarity=0.452 Sum_probs=29.8
Q ss_pred cCCCe-EEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCchhhh
Q 030464 75 RRRGV-HWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVR 114 (177)
Q Consensus 75 ~~~~~-~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~dLlr 114 (177)
|.+|+ .++|+||||+|||++|+.|++.+ .+..+++.++..
T Consensus 594 ~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~ 639 (857)
T PRK10865 594 PNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFME 639 (857)
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhh
Confidence 44554 57899999999999999999875 244566666543
No 425
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.11 E-value=0.0052 Score=46.91 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=20.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
+..+|+|+|++|+||||+..++..
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~ 25 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKS 25 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhh
Confidence 347899999999999999998843
No 426
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.11 E-value=0.004 Score=50.33 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=27.4
Q ss_pred cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++.......++-.+.|+|+.||||||+.+.|+..+
T Consensus 19 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 19 LDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33333444677889999999999999999998754
No 427
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=96.10 E-value=0.0049 Score=46.55 Aligned_cols=23 Identities=13% Similarity=0.107 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCchHHHHHHHHH
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+|+|+|+||+|||++..+|...
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~ 23 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDD 23 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999998753
No 428
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.10 E-value=0.005 Score=50.59 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=27.2
Q ss_pred cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++.......++-.+.|+|+.||||||+.+.|+..+
T Consensus 18 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 33334444677889999999999999999998643
No 429
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.09 E-value=0.0054 Score=51.38 Aligned_cols=35 Identities=9% Similarity=0.053 Sum_probs=27.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhC---CCeeeCch
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE---VPRISMSS 111 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lg---l~~Is~~d 111 (177)
....|+|.|++||||||+.+.|.+... ...+.+.+
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd 163 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIED 163 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEES
T ss_pred cceEEEEECCCccccchHHHHHhhhccccccceEEecc
Confidence 467899999999999999999988652 34455555
No 430
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.09 E-value=0.0046 Score=50.55 Aligned_cols=32 Identities=25% Similarity=0.274 Sum_probs=25.9
Q ss_pred cCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 71 EGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 71 ~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
......++-.+.|+|+.||||||+.+.|+..+
T Consensus 19 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 19 VSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred ceEEecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 33444677889999999999999999998643
No 431
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=96.08 E-value=0.0051 Score=48.47 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
.+..+|+|+|++||||||+..+|..
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~ 36 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKN 36 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHS
T ss_pred CcEEEEEEECCCccchHHHHHHhhh
Confidence 6789999999999999999999975
No 432
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.08 E-value=0.0048 Score=50.44 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=28.3
Q ss_pred cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++.......++-.+.|+|+.||||||+.+.|+..+
T Consensus 21 l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 21 LKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44444555688899999999999999999998754
No 433
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=96.08 E-value=0.0057 Score=47.33 Aligned_cols=25 Identities=20% Similarity=0.150 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
+..+|+|+|++|+|||++..++...
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~ 37 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGE 37 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccC
Confidence 4578999999999999999998754
No 434
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.08 E-value=0.0078 Score=49.02 Aligned_cols=36 Identities=22% Similarity=0.159 Sum_probs=29.1
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCc
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMS 110 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~ 110 (177)
..++..+.|.|+||+|||++|..++... ++.+++..
T Consensus 20 i~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 20 FERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 3578889999999999999999998633 45677765
No 435
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.07 E-value=0.013 Score=51.49 Aligned_cols=52 Identities=13% Similarity=-0.034 Sum_probs=36.0
Q ss_pred CCccccCccC--cccCCCeEEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCchhhh
Q 030464 63 RSVTLPDTEG--RERRRGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVR 114 (177)
Q Consensus 63 ~~~~~~~~~~--~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~dLlr 114 (177)
.-.+.+|.-. ....++-.+.|.|||||||||+|..++... | +.+|+..+.+.
T Consensus 38 TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~ 96 (321)
T TIGR02012 38 TGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALD 96 (321)
T ss_pred CCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhH
Confidence 4456666653 244578889999999999999998876543 2 44676655444
No 436
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.07 E-value=0.005 Score=49.60 Aligned_cols=31 Identities=23% Similarity=0.258 Sum_probs=25.6
Q ss_pred CcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 72 ~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.....++-++.|+|+.||||||+.+.|+..+
T Consensus 22 s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 22 SLHIRKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3344677889999999999999999998653
No 437
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.07 E-value=0.005 Score=49.53 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=26.8
Q ss_pred CccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 69 DTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 69 ~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
+........+-++.|+|+.||||||+.+.|+..+
T Consensus 18 ~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 18 DDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3333444677889999999999999999998654
No 438
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.07 E-value=0.0065 Score=53.44 Aligned_cols=35 Identities=11% Similarity=0.125 Sum_probs=27.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCch
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSS 111 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~d 111 (177)
...+|+|.|++||||||+.+.|.... +...+.+.|
T Consensus 143 ~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd 182 (323)
T PRK13833 143 SRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILED 182 (323)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecC
Confidence 35689999999999999999998764 234566554
No 439
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.06 E-value=0.0053 Score=49.50 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=27.3
Q ss_pred cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++.......++-++.|+|+.||||||+.+.|+..+
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 16 LDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred ecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33334445677889999999999999999998643
No 440
>PRK08727 hypothetical protein; Validated
Probab=96.06 E-value=0.0052 Score=50.98 Aligned_cols=33 Identities=12% Similarity=0.068 Sum_probs=25.0
Q ss_pred EEEEcCCCCCchHHHHHHHHHh---CC--CeeeCchhh
Q 030464 81 WAFIGSPRAKKHVYAEMLSKLL---EV--PRISMSSIV 113 (177)
Q Consensus 81 IlIiGpPGSGKSTlA~~LAk~l---gl--~~Is~~dLl 113 (177)
++|.|++|+|||++++.++... |. .++++.++.
T Consensus 44 l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~ 81 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA 81 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh
Confidence 8999999999999999986542 33 466665543
No 441
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=96.06 E-value=0.0051 Score=47.23 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCchHHHHHHHHH
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+|+|+|++|||||++..++.+.
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~ 24 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKD 24 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999874
No 442
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.0074 Score=58.69 Aligned_cols=47 Identities=23% Similarity=0.279 Sum_probs=36.5
Q ss_pred ccCcccCCCeEE-EEEcCCCCCchHHHHHHHHHhC-----CCeeeCchhhhhc
Q 030464 70 TEGRERRRGVHW-AFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVRQD 116 (177)
Q Consensus 70 ~~~~~~~~~~~I-lIiGpPGSGKSTlA~~LAk~lg-----l~~Is~~dLlr~e 116 (177)
+....|.+|+-. +|.||.|+|||.+|+.||+.+. +..|+|++...+.
T Consensus 512 aGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkH 564 (786)
T COG0542 512 AGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKH 564 (786)
T ss_pred cCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHH
Confidence 444556788755 5689999999999999999874 6678888876653
No 443
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=96.05 E-value=0.0055 Score=46.59 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCchHHHHHHHHH
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+|+|+|+||||||++..++...
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~ 26 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRN 26 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999753
No 444
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=96.04 E-value=0.0055 Score=47.34 Aligned_cols=24 Identities=8% Similarity=0.141 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
.-++|+|+|++|+|||++..++..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~ 26 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTD 26 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Confidence 347899999999999999999865
No 445
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.04 E-value=0.0052 Score=50.35 Aligned_cols=33 Identities=24% Similarity=0.229 Sum_probs=26.4
Q ss_pred ccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 70 TEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 70 ~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.......++-++.|+|+.||||||+.+.|+..+
T Consensus 19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 19 DVSLSINPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 333444677889999999999999999998643
No 446
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.04 E-value=0.0058 Score=49.17 Aligned_cols=31 Identities=16% Similarity=0.285 Sum_probs=25.6
Q ss_pred CcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 72 ~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
......+-++.|+|+.||||||+.+.|+..+
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 20 SFSVEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3344677889999999999999999998653
No 447
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.04 E-value=0.0078 Score=46.00 Aligned_cols=30 Identities=20% Similarity=0.257 Sum_probs=24.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~ 105 (177)
..+..|++.|+=|+||||+++.+++.+|+.
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 356778999999999999999999999875
No 448
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=96.04 E-value=0.0055 Score=47.00 Aligned_cols=23 Identities=9% Similarity=0.072 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCchHHHHHHHHH
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
++|+|+|++|+|||++..++...
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~ 23 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYAND 23 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 37999999999999999988654
No 449
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.04 E-value=0.0061 Score=55.61 Aligned_cols=34 Identities=12% Similarity=0.066 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCc
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMS 110 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~ 110 (177)
++..|+|+|++||||||.+..||..+ | +..++.+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D 137 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCAD 137 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCc
Confidence 46788999999999999999998765 3 3455553
No 450
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=96.03 E-value=0.0047 Score=45.60 Aligned_cols=21 Identities=10% Similarity=0.199 Sum_probs=19.2
Q ss_pred EEEEcCCCCCchHHHHHHHHH
Q 030464 81 WAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 81 IlIiGpPGSGKSTlA~~LAk~ 101 (177)
|+|+|++|+|||++.++|...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 789999999999999999764
No 451
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=96.03 E-value=0.0052 Score=46.57 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCchHHHHHHHH
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk 100 (177)
++|+|+|.+|||||++..++..
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~ 22 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHS 22 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999998864
No 452
>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=96.03 E-value=0.028 Score=46.38 Aligned_cols=85 Identities=20% Similarity=0.316 Sum_probs=59.4
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHH-----------HH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII-----------FG 144 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli-----------~~ 144 (177)
.++..|++-|.-+|||||+|..|.+.+ .+-.....++ ..-...+++|+.+..++.+...+||+.+ +.
T Consensus 3 ~rg~liV~eGlDrsgKstQ~~~l~~~l-~~~~~~~~l~-~FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~~ 80 (208)
T KOG3327|consen 3 IRGALIVLEGLDRSGKSTQCGKLVESL-IPGLDPAELL-RFPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHVS 80 (208)
T ss_pred CCccEEeeeccccCCceeehhHHHHHH-HhccChHHhh-hcchhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHHH
Confidence 477889999999999999999998887 2222222222 2223456788999999988888887643 45
Q ss_pred HHHHHHHccCCCCcceEEEeCCC
Q 030464 145 LLSKRLEDGYYRGEIGFILDGLP 167 (177)
Q Consensus 145 Ll~~~L~~~~~~~~~G~ILDGfP 167 (177)
+|++.+... ..+|+|-|-
T Consensus 81 ~i~e~l~kg-----~~~ivDRY~ 98 (208)
T KOG3327|consen 81 LIKEKLAKG-----TTLIVDRYS 98 (208)
T ss_pred HHHHHHhcC-----CeEEEecce
Confidence 666666653 467888763
No 453
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.03 E-value=0.0096 Score=54.72 Aligned_cols=50 Identities=10% Similarity=0.019 Sum_probs=34.3
Q ss_pred CccccCccCc-ccCCCeEEEEEcCCCCCchHHHHHHHHH----hC--CCeeeCchhh
Q 030464 64 SVTLPDTEGR-ERRRGVHWAFIGSPRAKKHVYAEMLSKL----LE--VPRISMSSIV 113 (177)
Q Consensus 64 ~~~~~~~~~~-~~~~~~~IlIiGpPGSGKSTlA~~LAk~----lg--l~~Is~~dLl 113 (177)
-.+.++.... ...++-.++|.|+||+|||++|.+++.. .| +.+|++.+-.
T Consensus 16 GI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~ 72 (509)
T PRK09302 16 GIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESP 72 (509)
T ss_pred CchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCH
Confidence 3445555432 3457888999999999999999987542 13 4577776533
No 454
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.03 E-value=0.0065 Score=51.33 Aligned_cols=37 Identities=11% Similarity=0.015 Sum_probs=28.9
Q ss_pred ccCCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCc
Q 030464 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMS 110 (177)
Q Consensus 74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~ 110 (177)
...++..++|.|+||+|||++|.+++... .+.++++.
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 34578889999999999999999986632 35577764
No 455
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.03 E-value=0.0063 Score=51.56 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
..+.+++|+|++|||||+++..|-..+
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~ 37 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYL 37 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 356799999999999999998886654
No 456
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.03 E-value=0.013 Score=51.62 Aligned_cols=51 Identities=14% Similarity=-0.018 Sum_probs=34.8
Q ss_pred CCccccCccCc--ccCCCeEEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCchhh
Q 030464 63 RSVTLPDTEGR--ERRRGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIV 113 (177)
Q Consensus 63 ~~~~~~~~~~~--~~~~~~~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~dLl 113 (177)
.-.+.+|.-.. ...++-.+.|.|||||||||+|-.++... | +.+|+..+-+
T Consensus 38 TGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~ 95 (325)
T cd00983 38 TGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHAL 95 (325)
T ss_pred CCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccH
Confidence 44555555422 34577788899999999999999987543 3 4466665433
No 457
>PHA02624 large T antigen; Provisional
Probab=96.02 E-value=0.0076 Score=57.30 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=29.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~ 110 (177)
.+.-.|+|.||||+||||+|..|.+.+|-..+++.
T Consensus 429 PKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVN 463 (647)
T PHA02624 429 PKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVN 463 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEee
Confidence 45558899999999999999999999966667764
No 458
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.02 E-value=0.0046 Score=52.03 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=28.5
Q ss_pred cccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 66 TLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 66 ~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
+.+.....+..++-.++|+|++||||||+.+.|+--
T Consensus 18 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GL 53 (235)
T COG1122 18 AALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGL 53 (235)
T ss_pred eeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCc
Confidence 344445556678889999999999999999988654
No 459
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=96.02 E-value=0.0058 Score=46.19 Aligned_cols=22 Identities=14% Similarity=0.101 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCchHHHHHHHHH
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
+|+|+|++|||||+++.++...
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~ 22 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLING 22 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999774
No 460
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.02 E-value=0.0059 Score=49.78 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=26.7
Q ss_pred CccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 69 DTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 69 ~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
........++-++.|+|+.||||||+.+.|+..+
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 17 NGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred ccceeEecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3333444677889999999999999999998643
No 461
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.01 E-value=0.0072 Score=50.44 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=38.5
Q ss_pred cCCCCccccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh----C--CCeeeCch
Q 030464 60 DSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL----E--VPRISMSS 111 (177)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l----g--l~~Is~~d 111 (177)
+.....+.++.-.....++-.++|.|+||+|||+++..++... | +.++++.+
T Consensus 12 ~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~ 69 (271)
T cd01122 12 EVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE 69 (271)
T ss_pred CCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc
Confidence 3345677777766556677789999999999999998876542 3 55777753
No 462
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.01 E-value=0.0058 Score=50.49 Aligned_cols=35 Identities=20% Similarity=0.131 Sum_probs=27.4
Q ss_pred cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++.......++-++.|+|+.||||||+.+.|+..+
T Consensus 19 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 19 LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred eccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33334445678889999999999999999998653
No 463
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.01 E-value=0.0058 Score=49.55 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=27.5
Q ss_pred cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
+..-.....++-.+.|+|+.||||||+.+.|+..+
T Consensus 21 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 21 LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred ecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33334445678899999999999999999998654
No 464
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.00 E-value=0.0049 Score=50.51 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=27.0
Q ss_pred CccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 69 DTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 69 ~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
+.......++-.+.|+|+.||||||+.+.|+..+
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 17 KGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3334445677889999999999999999998653
No 465
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.00 E-value=0.0081 Score=59.01 Aligned_cols=25 Identities=16% Similarity=0.061 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
..+++|+|+||+|||++++.||+.+
T Consensus 208 ~~n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 208 QNNPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred cCceeEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999986
No 466
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.00 E-value=0.0077 Score=45.83 Aligned_cols=24 Identities=13% Similarity=0.140 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
+-.+|+|+|++|+||||+.+.+..
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~ 29 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQ 29 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999999874
No 467
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.00 E-value=0.0057 Score=48.00 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=20.0
Q ss_pred EEEEcCCCCCchHHHHHHHHHh
Q 030464 81 WAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 81 IlIiGpPGSGKSTlA~~LAk~l 102 (177)
|.|+|++||||||++.+|.+.+
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999998875
No 468
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=96.00 E-value=0.0063 Score=46.40 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCchHHHHHHHH
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk 100 (177)
.+|+|+|+||+|||++..++..
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~ 24 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFAD 24 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999975
No 469
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=96.00 E-value=0.0058 Score=46.81 Aligned_cols=23 Identities=13% Similarity=0.122 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCchHHHHHHHHH
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+|+|+|++|+|||++..++...
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~ 24 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADD 24 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999763
No 470
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=95.99 E-value=0.0055 Score=48.93 Aligned_cols=24 Identities=13% Similarity=0.022 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.+|+|+|++|+||||++.++.+..
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 899999999999999999998754
No 471
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.99 E-value=0.0062 Score=49.29 Aligned_cols=35 Identities=20% Similarity=0.153 Sum_probs=27.3
Q ss_pred cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++.......++-++.|+|+.||||||+.+.|+..+
T Consensus 21 l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 21 LKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33333444677889999999999999999998653
No 472
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=95.99 E-value=0.0057 Score=46.10 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCchHHHHHHHH
Q 030464 80 HWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk 100 (177)
+|+|+|+|||||||+..++-.
T Consensus 2 ki~liG~~~~GKSsli~~l~~ 22 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMY 22 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 799999999999999988743
No 473
>PHA03132 thymidine kinase; Provisional
Probab=95.98 E-value=0.075 Score=50.30 Aligned_cols=58 Identities=16% Similarity=0.071 Sum_probs=37.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRG 134 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G 134 (177)
+.+.|+|-|.-||||||+++.|++.+|..++.+.+=+..-..--+.+++.+.+.+.++
T Consensus 256 ~~~fIv~EGidGsGKTTlik~L~e~lg~~Vi~t~EP~~~W~~vy~n~l~~I~~~~~r~ 313 (580)
T PHA03132 256 PACFLFLEGVMGVGKTTLLNHMRGILGDNVLVFPEPMRYWTEVYSNCLKEIYKLVKPG 313 (580)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHhCCceEEEeCCCCchhhccccHHHHHHHHHhcc
Confidence 5788999999999999999999998855544433211100000134567777776554
No 474
>COG3911 Predicted ATPase [General function prediction only]
Probab=95.98 E-value=0.0066 Score=48.69 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=29.1
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc-hhhhhccC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS-SIVRQDLS 118 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~-dLlr~el~ 118 (177)
+.+++++.|.||+||||+...|+..=-..+-..+ +++..+-.
T Consensus 8 R~~~fIltGgpGaGKTtLL~aLa~~Gfatvee~~r~ii~~es~ 50 (183)
T COG3911 8 RHKRFILTGGPGAGKTTLLAALARAGFATVEEAGRDIIALESA 50 (183)
T ss_pred cceEEEEeCCCCCcHHHHHHHHHHcCceeeccchhhHHHHHHh
Confidence 4567889999999999999999876323333333 46665543
No 475
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=95.98 E-value=0.0067 Score=50.12 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=26.9
Q ss_pred eEEEEEcCCCCCchHHHHHHHH----HhCCCeeeCchhhhh
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSK----LLEVPRISMSSIVRQ 115 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk----~lgl~~Is~~dLlr~ 115 (177)
.+|-|.||||||||++..++.+ +|.+.+|. +|++.+
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~-~Di~t~ 53 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVIT-GDIYTK 53 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEe-ceeech
Confidence 7888999999999999777655 45666666 355553
No 476
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.98 E-value=0.0055 Score=49.98 Aligned_cols=35 Identities=20% Similarity=0.135 Sum_probs=27.5
Q ss_pred cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++.......++-++.|+|+.||||||+.+.|+..+
T Consensus 16 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred ecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33334445678899999999999999999998654
No 477
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.97 E-value=0.0065 Score=48.54 Aligned_cols=28 Identities=11% Similarity=0.054 Sum_probs=24.2
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
..++-++.|+|++||||||+.+.|+..+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3567789999999999999999998754
No 478
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=95.97 E-value=0.0061 Score=49.98 Aligned_cols=32 Identities=13% Similarity=0.177 Sum_probs=26.3
Q ss_pred ccCcccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 70 TEGRERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 70 ~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.......++-.+.|+|+.||||||+.+.|+..
T Consensus 18 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 18 GVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred ccceEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33344567788999999999999999999875
No 479
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.96 E-value=0.0068 Score=47.82 Aligned_cols=31 Identities=16% Similarity=0.167 Sum_probs=25.5
Q ss_pred CcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 72 ~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.....++-.+.|+|+.|+||||+.+.|+..+
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 20 SLNIEAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3344677889999999999999999998543
No 480
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.95 E-value=0.0064 Score=59.68 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.+++++|+||+|||++++.|++..
T Consensus 200 ~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CceEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999987
No 481
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.95 E-value=0.0059 Score=49.98 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=27.0
Q ss_pred cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
++.......++-.+.|+|+.||||||+.+.|+..
T Consensus 23 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 23 LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3344444567788999999999999999999864
No 482
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.94 E-value=0.0068 Score=49.34 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=26.9
Q ss_pred ccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 70 TEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 70 ~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.......++-.+.|+|+.||||||+.+.|+..+
T Consensus 18 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 18 DISLDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 333444677889999999999999999998765
No 483
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.93 E-value=0.007 Score=47.69 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=25.6
Q ss_pred CcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 72 ~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.....++-.+.|+|+.||||||+++.|+...
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 22 SLELKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3344577889999999999999999998754
No 484
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.93 E-value=0.006 Score=51.94 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=29.5
Q ss_pred cccCccCcccCCCeEEEEEcCCCCCchHHHHHHHH
Q 030464 66 TLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 66 ~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
+.++.-+....++-.+-|+|++||||||+++.|+-
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhc
Confidence 45666666677888999999999999999999975
No 485
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=95.92 E-value=0.0058 Score=48.64 Aligned_cols=24 Identities=21% Similarity=0.124 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHH
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
-++|+|+|+|||||||+...|...
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999998775
No 486
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.92 E-value=0.0067 Score=48.69 Aligned_cols=31 Identities=26% Similarity=0.289 Sum_probs=25.6
Q ss_pred CcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 72 ~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.....++-++.|+|+.||||||+.+.|+..+
T Consensus 20 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 20 SLDLYAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3344577889999999999999999998753
No 487
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.92 E-value=0.0059 Score=49.23 Aligned_cols=33 Identities=24% Similarity=0.258 Sum_probs=26.3
Q ss_pred ccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 70 TEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 70 ~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.......++-++.|+|+.||||||+.+.|+..+
T Consensus 17 ~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 17 DVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred cceeEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 333444677889999999999999999997653
No 488
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.91 E-value=0.0055 Score=50.23 Aligned_cols=35 Identities=20% Similarity=0.159 Sum_probs=27.3
Q ss_pred cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++.......++-.+.|+|+.||||||+.+.|+..+
T Consensus 25 l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 25 LHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 33344445677789999999999999999998654
No 489
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.90 E-value=0.0066 Score=50.22 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=27.6
Q ss_pred cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++.......++-++.|+|+.||||||+.+.|+..+
T Consensus 19 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 19 LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred eecceeEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 33334445677889999999999999999998754
No 490
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.90 E-value=0.0062 Score=48.87 Aligned_cols=35 Identities=11% Similarity=-0.106 Sum_probs=27.8
Q ss_pred ccccCccCcccCCCeEEEEEcCCCCCchHHHHHHH
Q 030464 65 VTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLS 99 (177)
Q Consensus 65 ~~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LA 99 (177)
.+.++.-.....++-++.|+||.||||||+.+.+.
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 34455555556788899999999999999999885
No 491
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.90 E-value=0.0057 Score=49.66 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=27.2
Q ss_pred cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++.-.....++-++.|+|+.||||||+.+.|+..+
T Consensus 20 l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33334445677889999999999999999998653
No 492
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.90 E-value=0.0072 Score=49.66 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=26.5
Q ss_pred ccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 70 TEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 70 ~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.-.....++-++.|+|+.||||||+.+.|+..+
T Consensus 19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 19 DVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 333445678889999999999999999998643
No 493
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=95.90 E-value=0.007 Score=46.32 Aligned_cols=24 Identities=8% Similarity=0.034 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
..++|+|+|.||+|||++..++..
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~ 27 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVT 27 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHc
Confidence 457899999999999999998864
No 494
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=95.89 E-value=0.0055 Score=46.25 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCchHHHHHHHHH
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
+|+|+|++|+|||++..++...
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~ 22 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHA 22 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcC
Confidence 4899999999999999999764
No 495
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.89 E-value=0.006 Score=55.82 Aligned_cols=49 Identities=18% Similarity=0.058 Sum_probs=33.4
Q ss_pred ccccCcc-CcccCCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCchhh
Q 030464 65 VTLPDTE-GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIV 113 (177)
Q Consensus 65 ~~~~~~~-~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~dLl 113 (177)
.+.+|.- +....++-.++|.|+||+||||++.+++... ++.+++..+-.
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~ 134 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESL 134 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCH
Confidence 4444443 2234577789999999999999999987654 34567765443
No 496
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.89 E-value=0.0072 Score=49.75 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=25.6
Q ss_pred CcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 72 ~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.....++-++.|+|+.||||||+.+.|+..+
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 22 SLDIPSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3344577889999999999999999998654
No 497
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.89 E-value=0.0067 Score=57.96 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=25.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~ 105 (177)
.+.-++|.|+||+||||+|+.+|+.+++.
T Consensus 37 l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 37 LHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 34557999999999999999999998774
No 498
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.88 E-value=0.0063 Score=47.81 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=27.6
Q ss_pred cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
+........++-.+.|+|+.||||||+.+.|+..+
T Consensus 16 l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33444445677889999999999999999998753
No 499
>PTZ00035 Rad51 protein; Provisional
Probab=95.88 E-value=0.03 Score=49.41 Aligned_cols=38 Identities=18% Similarity=0.052 Sum_probs=28.2
Q ss_pred CCccccCccC-cccCCCeEEEEEcCCCCCchHHHHHHHH
Q 030464 63 RSVTLPDTEG-RERRRGVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 63 ~~~~~~~~~~-~~~~~~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
.-.+.++.-. .....+-.+.|.|+||||||++|..++-
T Consensus 102 TG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~ 140 (337)
T PTZ00035 102 TGSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCV 140 (337)
T ss_pred CCcHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHH
Confidence 3345555542 2445778889999999999999999874
No 500
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.88 E-value=0.0052 Score=55.67 Aligned_cols=35 Identities=9% Similarity=0.096 Sum_probs=27.4
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh-----C--CCeeeCchhhh
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLL-----E--VPRISMSSIVR 114 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~l-----g--l~~Is~~dLlr 114 (177)
.++|.|+||+|||++++.++..+ + +.+++..+++.
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~ 191 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTN 191 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH
Confidence 37899999999999999999875 3 44667666543
Done!