Query 030464
Match_columns 177
No_of_seqs 138 out of 1505
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 23:00:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030464.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030464hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3umf_A Adenylate kinase; rossm 100.0 2.8E-28 9.6E-33 200.2 11.0 100 76-176 27-126 (217)
2 3sr0_A Adenylate kinase; phosp 99.9 1.9E-28 6.4E-33 199.2 7.7 93 79-176 1-93 (206)
3 3gmt_A Adenylate kinase; ssgci 99.9 9.5E-25 3.2E-29 181.1 9.7 97 78-176 8-104 (230)
4 3tlx_A Adenylate kinase 2; str 99.8 3.5E-21 1.2E-25 158.3 10.2 99 76-176 27-125 (243)
5 1ak2_A Adenylate kinase isoenz 99.8 4.5E-20 1.5E-24 149.8 9.1 101 74-176 12-112 (233)
6 3be4_A Adenylate kinase; malar 99.8 4.4E-20 1.5E-24 148.3 8.9 98 77-176 4-101 (217)
7 3dl0_A Adenylate kinase; phosp 99.8 6.6E-20 2.2E-24 146.1 9.4 96 79-176 1-96 (216)
8 1aky_A Adenylate kinase; ATP:A 99.8 1.4E-19 4.6E-24 145.1 9.9 98 76-175 2-100 (220)
9 3fb4_A Adenylate kinase; psych 99.8 1.3E-19 4.3E-24 144.2 9.6 96 79-176 1-96 (216)
10 1e4v_A Adenylate kinase; trans 99.8 1.6E-19 5.5E-24 144.3 7.1 96 79-176 1-96 (214)
11 1zak_A Adenylate kinase; ATP:A 99.8 3.7E-19 1.3E-23 142.7 6.6 99 77-176 4-102 (222)
12 2xb4_A Adenylate kinase; ATP-b 99.8 1.7E-18 5.9E-23 139.9 10.1 95 79-176 1-95 (223)
13 2cdn_A Adenylate kinase; phosp 99.8 2.2E-18 7.4E-23 136.1 9.6 99 75-175 17-115 (201)
14 1zd8_A GTP:AMP phosphotransfer 99.7 5.6E-18 1.9E-22 136.4 8.7 98 76-176 5-102 (227)
15 2c95_A Adenylate kinase 1; tra 99.7 1.2E-17 4E-22 130.0 9.6 99 76-175 7-105 (196)
16 1ukz_A Uridylate kinase; trans 99.7 1.4E-17 4.8E-22 131.2 9.5 101 75-175 12-113 (203)
17 2bwj_A Adenylate kinase 5; pho 99.7 3.4E-17 1.2E-21 127.6 8.6 98 77-175 11-108 (199)
18 1qf9_A UMP/CMP kinase, protein 99.7 1.1E-16 3.8E-21 123.5 10.3 97 77-176 5-101 (194)
19 3cm0_A Adenylate kinase; ATP-b 99.7 7.3E-17 2.5E-21 124.9 8.4 93 76-175 2-94 (186)
20 1tev_A UMP-CMP kinase; ploop, 99.7 2.2E-16 7.4E-21 122.0 10.4 98 77-174 2-102 (196)
21 2bbw_A Adenylate kinase 4, AK4 99.5 4.2E-14 1.4E-18 115.1 10.4 97 77-176 26-122 (246)
22 3lw7_A Adenylate kinase relate 99.4 4.7E-13 1.6E-17 100.6 6.4 90 79-176 2-95 (179)
23 1ly1_A Polynucleotide kinase; 99.3 3.1E-12 1.1E-16 97.5 4.3 93 78-175 2-95 (181)
24 2wwf_A Thymidilate kinase, put 99.1 4.5E-11 1.5E-15 93.8 4.9 91 76-169 8-105 (212)
25 2pbr_A DTMP kinase, thymidylat 99.1 7.1E-10 2.4E-14 85.3 9.9 57 79-141 1-60 (195)
26 1ltq_A Polynucleotide kinase; 99.1 7.2E-11 2.5E-15 97.9 4.2 93 78-175 2-95 (301)
27 1nks_A Adenylate kinase; therm 99.0 2.7E-10 9.4E-15 87.3 6.4 39 79-117 2-45 (194)
28 3t61_A Gluconokinase; PSI-biol 99.0 1.1E-09 3.7E-14 86.0 9.4 84 77-175 17-103 (202)
29 2v54_A DTMP kinase, thymidylat 99.0 3.4E-10 1.2E-14 88.2 6.4 83 77-170 3-98 (204)
30 1kht_A Adenylate kinase; phosp 99.0 4E-10 1.4E-14 86.5 6.7 41 77-117 2-47 (192)
31 2rhm_A Putative kinase; P-loop 99.0 6.9E-10 2.4E-14 85.5 6.7 38 76-113 3-40 (193)
32 1cke_A CK, MSSA, protein (cyti 99.0 1.7E-09 5.9E-14 85.6 8.4 39 78-116 5-43 (227)
33 1y63_A LMAJ004144AAA protein; 98.9 1.1E-09 3.7E-14 85.3 6.3 41 76-116 8-49 (184)
34 2p5t_B PEZT; postsegregational 98.9 1.5E-09 5.2E-14 88.9 7.4 91 75-174 29-125 (253)
35 3vaa_A Shikimate kinase, SK; s 98.9 1E-09 3.4E-14 86.4 5.3 41 76-116 23-63 (199)
36 2iyv_A Shikimate kinase, SK; t 98.9 2.9E-09 1E-13 82.0 7.0 39 79-117 3-41 (184)
37 1via_A Shikimate kinase; struc 98.9 1.5E-09 5E-14 83.4 5.1 38 79-116 5-42 (175)
38 4eaq_A DTMP kinase, thymidylat 98.9 3E-09 1E-13 86.5 7.1 94 75-174 23-135 (229)
39 2z0h_A DTMP kinase, thymidylat 98.9 1.6E-08 5.3E-13 78.1 10.0 56 79-140 1-59 (197)
40 1zuh_A Shikimate kinase; alpha 98.8 2.4E-09 8.1E-14 81.5 5.1 40 78-117 7-46 (168)
41 1nn5_A Similar to deoxythymidy 98.8 5.3E-09 1.8E-13 81.8 7.1 63 76-140 7-69 (215)
42 3a4m_A L-seryl-tRNA(SEC) kinas 98.8 6.6E-09 2.3E-13 85.5 7.3 81 77-174 3-88 (260)
43 2if2_A Dephospho-COA kinase; a 98.8 6.4E-09 2.2E-13 81.3 6.7 49 79-128 2-50 (204)
44 1jjv_A Dephospho-COA kinase; P 98.8 2.3E-08 7.8E-13 78.4 9.7 41 79-120 3-43 (206)
45 2vli_A Antibiotic resistance p 98.8 1.4E-08 4.9E-13 77.6 8.2 33 75-107 2-34 (183)
46 1vht_A Dephospho-COA kinase; s 98.8 1.1E-08 3.6E-13 81.2 7.3 53 77-130 3-55 (218)
47 2f6r_A COA synthase, bifunctio 98.8 1.6E-08 5.6E-13 84.4 8.6 52 75-127 72-123 (281)
48 1gvn_B Zeta; postsegregational 98.8 6.4E-09 2.2E-13 87.4 6.1 89 76-173 31-125 (287)
49 2plr_A DTMP kinase, probable t 98.8 8.1E-09 2.8E-13 80.3 5.4 29 77-105 3-31 (213)
50 3trf_A Shikimate kinase, SK; a 98.7 7.9E-09 2.7E-13 79.5 4.2 40 78-117 5-44 (185)
51 3kb2_A SPBC2 prophage-derived 98.7 1.5E-08 5.1E-13 76.4 4.7 37 79-115 2-38 (173)
52 2pt5_A Shikimate kinase, SK; a 98.7 1.2E-08 4.1E-13 77.1 4.1 39 79-117 1-39 (168)
53 3iij_A Coilin-interacting nucl 98.7 1.1E-08 3.8E-13 78.6 3.9 41 76-116 9-49 (180)
54 1e6c_A Shikimate kinase; phosp 98.7 9.7E-09 3.3E-13 77.9 3.4 38 79-116 3-40 (173)
55 4e22_A Cytidylate kinase; P-lo 98.6 9.2E-08 3.1E-12 78.4 8.5 40 76-115 25-64 (252)
56 3nwj_A ATSK2; P loop, shikimat 98.6 3.1E-08 1.1E-12 82.1 5.6 86 78-172 48-136 (250)
57 1uf9_A TT1252 protein; P-loop, 98.6 1.9E-08 6.6E-13 77.9 4.0 43 74-117 4-46 (203)
58 3zvl_A Bifunctional polynucleo 98.6 1.2E-07 4.1E-12 83.4 8.6 37 76-112 256-292 (416)
59 1kag_A SKI, shikimate kinase I 98.6 3.1E-08 1E-12 75.2 3.5 39 78-116 4-42 (173)
60 3v9p_A DTMP kinase, thymidylat 98.5 9.8E-08 3.3E-12 78.2 6.0 92 76-169 23-123 (227)
61 3fdi_A Uncharacterized protein 98.5 1.5E-07 5E-12 75.1 6.3 40 77-117 5-44 (201)
62 4eun_A Thermoresistant glucoki 98.5 5.1E-07 1.8E-11 70.8 8.7 38 76-113 27-64 (200)
63 2grj_A Dephospho-COA kinase; T 98.5 7.6E-08 2.6E-12 76.7 3.9 41 78-118 12-52 (192)
64 3ake_A Cytidylate kinase; CMP 98.5 9.9E-08 3.4E-12 74.1 4.4 37 80-116 4-40 (208)
65 1qhx_A CPT, protein (chloramph 98.5 1E-07 3.4E-12 72.7 4.2 38 77-114 2-41 (178)
66 3r20_A Cytidylate kinase; stru 98.5 8.3E-08 2.8E-12 79.1 3.8 42 75-116 6-47 (233)
67 2h92_A Cytidylate kinase; ross 98.5 8E-08 2.7E-12 75.8 3.3 40 77-116 2-41 (219)
68 1uj2_A Uridine-cytidine kinase 98.4 1.1E-07 3.6E-12 77.5 4.1 40 76-115 20-69 (252)
69 1knq_A Gluconate kinase; ALFA/ 98.4 1.9E-07 6.6E-12 71.1 4.7 37 77-113 7-43 (175)
70 3hdt_A Putative kinase; struct 98.4 2.5E-07 8.5E-12 75.5 5.4 40 77-117 13-52 (223)
71 1q3t_A Cytidylate kinase; nucl 98.4 1.7E-07 5.7E-12 75.5 4.1 41 76-116 14-54 (236)
72 2ze6_A Isopentenyl transferase 98.4 2.3E-07 7.8E-12 76.2 4.9 35 79-113 2-36 (253)
73 2qor_A Guanylate kinase; phosp 98.4 5.2E-07 1.8E-11 71.0 6.3 40 76-115 10-50 (204)
74 2axn_A 6-phosphofructo-2-kinas 98.3 1.4E-07 4.9E-12 85.6 2.6 41 76-116 33-78 (520)
75 1m7g_A Adenylylsulfate kinase; 98.3 2E-06 6.9E-11 67.9 7.9 41 76-117 23-69 (211)
76 4edh_A DTMP kinase, thymidylat 98.3 2.1E-06 7.3E-11 69.2 7.7 54 76-135 4-60 (213)
77 2qt1_A Nicotinamide riboside k 98.2 5E-07 1.7E-11 70.8 3.2 40 76-115 19-59 (207)
78 3lv8_A DTMP kinase, thymidylat 98.2 2.2E-06 7.5E-11 70.5 7.0 56 76-133 25-80 (236)
79 4i1u_A Dephospho-COA kinase; s 98.2 1.1E-06 3.6E-11 71.5 4.8 52 79-131 10-61 (210)
80 2jaq_A Deoxyguanosine kinase; 98.2 8.3E-07 2.8E-11 68.4 3.8 30 79-108 1-30 (205)
81 2pez_A Bifunctional 3'-phospho 98.1 2.2E-06 7.5E-11 65.7 4.4 41 76-116 3-47 (179)
82 1zp6_A Hypothetical protein AT 98.1 2.3E-06 7.8E-11 65.7 4.0 39 76-114 7-47 (191)
83 3crm_A TRNA delta(2)-isopenten 98.1 2.2E-06 7.5E-11 73.9 3.7 36 78-113 5-40 (323)
84 1a7j_A Phosphoribulokinase; tr 98.0 1.6E-06 5.4E-11 73.0 2.4 38 77-114 4-46 (290)
85 4tmk_A Protein (thymidylate ki 98.0 1.1E-05 3.7E-10 65.2 7.1 55 77-133 2-56 (213)
86 4hlc_A DTMP kinase, thymidylat 98.0 2.8E-05 9.6E-10 62.2 9.2 56 79-140 3-60 (205)
87 3uie_A Adenylyl-sulfate kinase 98.0 4.5E-06 1.5E-10 65.4 4.3 37 76-112 23-64 (200)
88 3tmk_A Thymidylate kinase; pho 98.0 1.1E-05 3.6E-10 65.6 6.4 54 77-135 4-57 (216)
89 2yvu_A Probable adenylyl-sulfa 98.0 3.2E-06 1.1E-10 65.1 2.8 42 76-118 11-57 (186)
90 3a8t_A Adenylate isopentenyltr 97.9 3.6E-06 1.2E-10 73.0 3.1 36 77-112 39-74 (339)
91 3t15_A Ribulose bisphosphate c 97.9 6.3E-06 2.2E-10 68.8 4.3 35 76-110 34-68 (293)
92 3d3q_A TRNA delta(2)-isopenten 97.9 6.2E-06 2.1E-10 71.5 3.8 34 79-112 8-41 (340)
93 3asz_A Uridine kinase; cytidin 97.9 6E-06 2E-10 64.6 3.0 39 76-114 4-44 (211)
94 3ec2_A DNA replication protein 97.9 4.4E-05 1.5E-09 58.3 7.8 39 77-115 37-81 (180)
95 3ld9_A DTMP kinase, thymidylat 97.9 2.4E-05 8.1E-10 63.9 6.5 66 65-133 9-75 (223)
96 3exa_A TRNA delta(2)-isopenten 97.9 8E-06 2.7E-10 70.5 3.9 36 77-112 2-37 (322)
97 1bif_A 6-phosphofructo-2-kinas 97.9 2.9E-05 9.8E-10 69.0 7.5 31 76-106 37-67 (469)
98 2gks_A Bifunctional SAT/APS ki 97.8 3.7E-05 1.3E-09 70.1 7.6 42 77-119 371-417 (546)
99 1x6v_B Bifunctional 3'-phospho 97.8 1.7E-05 5.9E-10 73.8 5.4 43 76-118 50-96 (630)
100 1dek_A Deoxynucleoside monopho 97.8 1E-05 3.6E-10 66.8 3.5 39 79-117 2-40 (241)
101 3foz_A TRNA delta(2)-isopenten 97.8 1.3E-05 4.3E-10 69.1 4.1 36 77-112 9-44 (316)
102 2bdt_A BH3686; alpha-beta prot 97.8 1.3E-05 4.4E-10 61.7 3.4 36 79-114 3-39 (189)
103 2qz4_A Paraplegin; AAA+, SPG7, 97.8 1.8E-05 6E-10 63.4 4.3 33 77-109 38-70 (262)
104 3eie_A Vacuolar protein sortin 97.8 8.3E-05 2.8E-09 62.4 8.4 34 77-110 50-83 (322)
105 1lv7_A FTSH; alpha/beta domain 97.8 2E-05 6.8E-10 63.6 4.3 32 78-109 45-76 (257)
106 2jeo_A Uridine-cytidine kinase 97.7 2.2E-05 7.6E-10 63.4 4.2 39 67-105 14-52 (245)
107 4b4t_M 26S protease regulatory 97.7 2E-05 7E-10 70.3 3.9 38 77-114 214-253 (434)
108 2j41_A Guanylate kinase; GMP, 97.7 1.9E-05 6.4E-10 61.0 3.2 26 77-102 5-30 (207)
109 3syl_A Protein CBBX; photosynt 97.7 1.5E-05 5E-10 65.6 2.6 26 77-102 66-91 (309)
110 3tr0_A Guanylate kinase, GMP k 97.7 2.2E-05 7.6E-10 60.6 3.4 28 76-103 5-32 (205)
111 3h4m_A Proteasome-activating n 97.7 2.6E-05 8.9E-10 63.5 3.9 33 77-109 50-82 (285)
112 3c8u_A Fructokinase; YP_612366 97.7 2.7E-05 9.3E-10 61.3 3.9 38 75-112 19-61 (208)
113 4b4t_K 26S protease regulatory 97.7 2.5E-05 8.6E-10 69.5 4.0 34 77-110 205-238 (428)
114 3b9p_A CG5977-PA, isoform A; A 97.7 2.7E-05 9.2E-10 63.9 3.9 37 77-113 53-91 (297)
115 4b4t_L 26S protease subunit RP 97.7 2.6E-05 8.8E-10 69.7 3.9 34 77-110 214-247 (437)
116 3hjn_A DTMP kinase, thymidylat 97.7 0.0002 6.9E-09 56.6 8.7 55 80-140 2-59 (197)
117 1d2n_A N-ethylmaleimide-sensit 97.7 3.4E-05 1.2E-09 62.8 4.3 33 77-109 63-95 (272)
118 3ch4_B Pmkase, phosphomevalona 97.6 2.9E-05 1E-09 62.8 3.8 39 77-115 10-51 (202)
119 4b4t_J 26S protease regulatory 97.6 2.4E-05 8.1E-10 69.4 3.4 34 77-110 181-214 (405)
120 3hws_A ATP-dependent CLP prote 97.6 3E-05 1E-09 66.0 3.9 34 77-110 50-83 (363)
121 3cf0_A Transitional endoplasmi 97.6 3.2E-05 1.1E-09 64.5 4.0 38 77-114 48-87 (301)
122 1ofh_A ATP-dependent HSL prote 97.6 3.5E-05 1.2E-09 62.8 3.9 33 77-109 49-81 (310)
123 1gtv_A TMK, thymidylate kinase 97.6 8.8E-06 3E-10 63.4 0.1 28 80-107 2-29 (214)
124 1p5z_B DCK, deoxycytidine kina 97.6 1.4E-05 4.8E-10 65.1 1.2 33 76-108 22-55 (263)
125 1g41_A Heat shock protein HSLU 97.6 4.6E-05 1.6E-09 68.2 4.6 35 77-111 49-83 (444)
126 2x8a_A Nuclear valosin-contain 97.6 4.1E-05 1.4E-09 63.5 3.8 30 81-110 47-76 (274)
127 1kgd_A CASK, peripheral plasma 97.6 4.2E-05 1.4E-09 59.0 3.5 28 76-103 3-30 (180)
128 1jbk_A CLPB protein; beta barr 97.6 5.8E-05 2E-09 56.2 4.2 26 77-102 42-67 (195)
129 3tau_A Guanylate kinase, GMP k 97.6 4.2E-05 1.4E-09 60.4 3.5 27 77-103 7-33 (208)
130 4b4t_H 26S protease regulatory 97.5 3.9E-05 1.3E-09 69.2 3.4 34 77-110 242-275 (467)
131 1m8p_A Sulfate adenylyltransfe 97.5 8E-05 2.7E-09 68.3 5.6 41 77-118 395-441 (573)
132 2ocp_A DGK, deoxyguanosine kin 97.5 4.9E-05 1.7E-09 61.0 3.7 28 77-104 1-29 (241)
133 3eph_A TRNA isopentenyltransfe 97.5 4.6E-05 1.6E-09 67.7 3.7 33 79-111 3-35 (409)
134 2p65_A Hypothetical protein PF 97.5 4.8E-05 1.6E-09 56.8 3.3 26 77-102 42-67 (187)
135 1g8f_A Sulfate adenylyltransfe 97.5 5.4E-05 1.8E-09 68.8 4.1 28 77-104 394-421 (511)
136 4b4t_I 26S protease regulatory 97.5 5.3E-05 1.8E-09 67.8 3.9 39 77-115 215-255 (437)
137 1um8_A ATP-dependent CLP prote 97.5 5.3E-05 1.8E-09 64.7 3.8 34 77-110 71-104 (376)
138 2r62_A Cell division protease 97.5 2.6E-05 9E-10 63.0 1.8 32 79-110 45-76 (268)
139 1ixz_A ATP-dependent metallopr 97.5 6.8E-05 2.3E-09 60.3 4.1 30 81-110 52-81 (254)
140 3bos_A Putative DNA replicatio 97.5 5.2E-05 1.8E-09 59.1 3.3 38 77-114 51-93 (242)
141 3ney_A 55 kDa erythrocyte memb 97.5 0.00031 1.1E-08 56.2 7.7 28 76-103 17-44 (197)
142 1xwi_A SKD1 protein; VPS4B, AA 97.5 7.4E-05 2.5E-09 63.2 3.8 39 77-115 44-85 (322)
143 2qp9_X Vacuolar protein sortin 97.5 6.6E-05 2.3E-09 64.3 3.6 37 78-114 84-122 (355)
144 1sq5_A Pantothenate kinase; P- 97.4 8.3E-05 2.8E-09 62.5 4.1 38 76-113 78-122 (308)
145 3cf2_A TER ATPase, transitiona 97.4 0.00018 6.2E-09 68.7 6.7 34 77-110 237-270 (806)
146 2v1u_A Cell division control p 97.4 0.00028 9.7E-09 58.8 7.1 26 77-102 43-68 (387)
147 2ga8_A Hypothetical 39.9 kDa p 97.4 4.1E-05 1.4E-09 66.9 1.9 30 77-106 23-52 (359)
148 3d8b_A Fidgetin-like protein 1 97.4 8.9E-05 3.1E-09 63.4 3.9 33 77-109 116-148 (357)
149 1rz3_A Hypothetical protein rb 97.4 0.00012 4.3E-09 57.2 4.4 28 75-102 19-46 (201)
150 2c9o_A RUVB-like 1; hexameric 97.4 0.0001 3.5E-09 65.1 4.0 34 77-110 62-97 (456)
151 3pfi_A Holliday junction ATP-d 97.4 0.00011 3.7E-09 61.4 3.9 33 78-110 55-87 (338)
152 2w58_A DNAI, primosome compone 97.4 9.9E-05 3.4E-09 57.1 3.3 37 79-115 55-96 (202)
153 1iy2_A ATP-dependent metallopr 97.4 0.00013 4.5E-09 59.7 4.1 30 81-110 76-105 (278)
154 3tqc_A Pantothenate kinase; bi 97.4 0.00014 5E-09 62.2 4.5 39 75-113 89-134 (321)
155 1odf_A YGR205W, hypothetical 3 97.3 0.00012 4.2E-09 61.5 3.9 39 76-114 29-75 (290)
156 2qmh_A HPR kinase/phosphorylas 97.3 0.00011 3.8E-09 59.6 3.5 35 76-111 32-66 (205)
157 3te6_A Regulatory protein SIR3 97.3 0.00015 5.1E-09 62.1 4.4 27 76-102 43-69 (318)
158 3vfd_A Spastin; ATPase, microt 97.3 0.00012 4.2E-09 62.9 3.9 32 78-109 148-179 (389)
159 1ye8_A Protein THEP1, hypothet 97.3 0.00011 3.7E-09 57.3 3.2 27 79-105 1-27 (178)
160 2kjq_A DNAA-related protein; s 97.3 0.00013 4.4E-09 55.3 3.3 37 77-113 35-76 (149)
161 1in4_A RUVB, holliday junction 97.3 0.00016 5.5E-09 61.1 4.0 29 79-107 52-80 (334)
162 2ce7_A Cell division protein F 97.3 0.00017 5.7E-09 65.0 4.0 32 79-110 50-81 (476)
163 3n70_A Transport activator; si 97.3 0.00014 4.6E-09 54.2 2.9 25 78-102 24-48 (145)
164 3pvs_A Replication-associated 97.3 0.00051 1.7E-08 61.0 7.0 32 79-110 51-82 (447)
165 1sxj_A Activator 1 95 kDa subu 97.2 0.00021 7.1E-09 64.1 4.0 32 78-109 77-108 (516)
166 1fnn_A CDC6P, cell division co 97.2 0.00068 2.3E-08 56.7 7.0 24 79-102 45-68 (389)
167 2zan_A Vacuolar protein sortin 97.2 0.00021 7.2E-09 63.0 3.8 39 77-115 166-207 (444)
168 1hqc_A RUVB; extended AAA-ATPa 97.2 0.0002 7E-09 58.9 3.4 31 78-108 38-68 (324)
169 4fcw_A Chaperone protein CLPB; 97.2 0.00021 7.2E-09 58.5 3.4 24 79-102 48-71 (311)
170 3a00_A Guanylate kinase, GMP k 97.2 0.00019 6.4E-09 55.4 2.8 24 79-102 2-25 (186)
171 1z06_A RAS-related protein RAB 97.2 0.00022 7.7E-09 54.1 3.2 38 64-101 6-43 (189)
172 2chg_A Replication factor C sm 97.2 0.00023 7.7E-09 54.2 3.2 23 80-102 40-62 (226)
173 1l8q_A Chromosomal replication 97.2 0.00024 8E-09 59.2 3.5 37 77-113 36-77 (324)
174 1njg_A DNA polymerase III subu 97.1 0.00026 8.9E-09 54.2 3.5 26 79-104 46-71 (250)
175 3cf2_A TER ATPase, transitiona 97.1 0.00058 2E-08 65.2 6.4 39 77-115 510-550 (806)
176 1lvg_A Guanylate kinase, GMP k 97.1 0.00022 7.5E-09 55.9 2.9 26 77-102 3-28 (198)
177 2r44_A Uncharacterized protein 97.1 0.00018 6.1E-09 60.0 2.5 30 79-108 47-76 (331)
178 3uk6_A RUVB-like 2; hexameric 97.1 0.00026 8.9E-09 59.5 3.4 27 78-104 70-96 (368)
179 2dhr_A FTSH; AAA+ protein, hex 97.1 0.00039 1.3E-08 62.9 4.6 31 80-110 66-96 (499)
180 2wjg_A FEOB, ferrous iron tran 97.1 0.00033 1.1E-08 52.7 3.6 28 74-101 3-30 (188)
181 3lnc_A Guanylate kinase, GMP k 97.1 0.00025 8.6E-09 56.3 3.0 27 76-102 25-52 (231)
182 2y8e_A RAB-protein 6, GH09086P 97.1 0.00026 8.9E-09 52.4 2.9 30 72-101 8-37 (179)
183 3co5_A Putative two-component 97.1 0.00011 3.7E-09 54.7 0.8 35 78-112 27-62 (143)
184 3pxg_A Negative regulator of g 97.1 0.00045 1.6E-08 61.3 4.8 26 77-102 200-225 (468)
185 2oil_A CATX-8, RAS-related pro 97.1 0.00034 1.2E-08 53.1 3.4 37 65-101 12-48 (193)
186 3m6a_A ATP-dependent protease 97.0 0.00039 1.3E-08 63.0 4.0 33 77-109 107-139 (543)
187 2qby_B CDC6 homolog 3, cell di 97.0 0.0004 1.4E-08 58.3 3.7 26 77-102 44-69 (384)
188 1c9k_A COBU, adenosylcobinamid 97.0 0.00027 9.3E-09 56.0 2.5 30 81-111 2-33 (180)
189 1z6g_A Guanylate kinase; struc 97.0 0.00035 1.2E-08 55.6 3.0 30 73-102 18-47 (218)
190 1ex7_A Guanylate kinase; subst 97.0 0.00035 1.2E-08 55.3 3.0 22 81-102 4-25 (186)
191 1tue_A Replication protein E1; 97.0 0.00035 1.2E-08 57.0 3.0 31 78-108 58-88 (212)
192 1upt_A ARL1, ADP-ribosylation 97.0 0.00056 1.9E-08 50.3 3.9 28 74-101 3-30 (171)
193 1oix_A RAS-related protein RAB 97.0 0.0004 1.4E-08 53.4 3.2 26 76-101 27-52 (191)
194 2a5j_A RAS-related protein RAB 97.0 0.00057 2E-08 52.0 4.0 37 65-101 8-44 (191)
195 2qby_A CDC6 homolog 1, cell di 97.0 0.0004 1.4E-08 57.7 3.3 34 77-110 44-83 (386)
196 2ew1_A RAS-related protein RAB 97.0 0.0004 1.4E-08 54.2 3.1 37 65-101 13-49 (201)
197 3hu3_A Transitional endoplasmi 97.0 0.00044 1.5E-08 62.2 3.7 34 77-110 237-270 (489)
198 4gp7_A Metallophosphoesterase; 97.0 0.00046 1.6E-08 52.7 3.3 39 76-117 7-45 (171)
199 1svm_A Large T antigen; AAA+ f 97.0 0.00059 2E-08 59.6 4.3 34 75-108 166-199 (377)
200 2bjv_A PSP operon transcriptio 96.9 0.00037 1.3E-08 56.2 2.8 25 79-103 30-54 (265)
201 3ihw_A Centg3; RAS, centaurin, 96.9 0.00066 2.2E-08 51.8 3.6 30 72-101 14-43 (184)
202 1kao_A RAP2A; GTP-binding prot 96.9 0.00063 2.2E-08 49.4 3.3 25 77-101 2-26 (167)
203 1znw_A Guanylate kinase, GMP k 96.9 0.00062 2.1E-08 53.3 3.5 30 74-103 16-45 (207)
204 1z2a_A RAS-related protein RAB 96.9 0.00062 2.1E-08 49.8 3.2 26 76-101 3-28 (168)
205 2qgz_A Helicase loader, putati 96.9 0.00044 1.5E-08 58.2 2.7 38 78-115 152-195 (308)
206 3pxi_A Negative regulator of g 96.9 0.00081 2.8E-08 62.8 4.8 26 77-102 200-225 (758)
207 1m7b_A RND3/RHOE small GTP-bin 96.9 0.00056 1.9E-08 51.7 3.1 28 74-101 3-30 (184)
208 1g8p_A Magnesium-chelatase 38 96.9 0.00041 1.4E-08 57.6 2.4 24 80-103 47-70 (350)
209 3aez_A Pantothenate kinase; tr 96.9 0.00076 2.6E-08 57.2 4.1 28 75-102 87-114 (312)
210 3u61_B DNA polymerase accessor 96.9 0.00046 1.6E-08 57.2 2.7 32 79-110 49-80 (324)
211 3cr8_A Sulfate adenylyltranfer 96.8 0.00031 1.1E-08 64.3 1.7 37 76-112 367-409 (552)
212 2ce2_X GTPase HRAS; signaling 96.8 0.00068 2.3E-08 49.1 3.2 25 77-101 2-26 (166)
213 2gf9_A RAS-related protein RAB 96.8 0.00079 2.7E-08 51.0 3.7 26 76-101 20-45 (189)
214 1s96_A Guanylate kinase, GMP k 96.8 0.00076 2.6E-08 54.3 3.5 28 76-103 14-41 (219)
215 1ypw_A Transitional endoplasmi 96.8 0.00057 2E-08 64.8 3.1 34 77-110 237-270 (806)
216 2vp4_A Deoxynucleoside kinase; 96.8 0.00055 1.9E-08 54.7 2.6 28 74-101 16-43 (230)
217 2ehv_A Hypothetical protein PH 96.8 0.00071 2.4E-08 53.3 3.2 35 65-99 16-51 (251)
218 2w0m_A SSO2452; RECA, SSPF, un 96.8 0.00084 2.9E-08 52.0 3.6 35 76-110 21-60 (235)
219 4a74_A DNA repair and recombin 96.8 0.00075 2.6E-08 52.5 3.3 29 74-102 21-49 (231)
220 1r6b_X CLPA protein; AAA+, N-t 96.8 0.0008 2.7E-08 62.6 4.0 38 77-114 486-526 (758)
221 1sxj_D Activator 1 41 kDa subu 96.8 0.00068 2.3E-08 56.2 3.2 24 80-103 60-83 (353)
222 2p5s_A RAS and EF-hand domain 96.7 0.00091 3.1E-08 51.2 3.4 29 73-101 23-51 (199)
223 1u8z_A RAS-related protein RAL 96.7 0.00095 3.2E-08 48.5 3.4 25 77-101 3-27 (168)
224 2cvh_A DNA repair and recombin 96.7 0.00085 2.9E-08 51.9 3.3 36 75-110 17-54 (220)
225 2hxs_A RAB-26, RAS-related pro 96.7 0.001 3.4E-08 49.3 3.5 26 76-101 4-29 (178)
226 2gco_A H9, RHO-related GTP-bin 96.7 0.0011 3.9E-08 50.9 3.9 26 76-101 23-48 (201)
227 1c1y_A RAS-related protein RAP 96.7 0.001 3.4E-08 48.6 3.4 25 77-101 2-26 (167)
228 2bov_A RAla, RAS-related prote 96.7 0.001 3.4E-08 50.6 3.4 27 75-101 11-37 (206)
229 1iqp_A RFCS; clamp loader, ext 96.7 0.001 3.5E-08 54.3 3.6 25 79-103 47-71 (327)
230 1xjc_A MOBB protein homolog; s 96.7 0.001 3.6E-08 52.0 3.5 26 77-102 3-28 (169)
231 1wms_A RAB-9, RAB9, RAS-relate 96.7 0.00093 3.2E-08 49.5 3.0 26 76-101 5-30 (177)
232 3clv_A RAB5 protein, putative; 96.7 0.0014 4.9E-08 49.0 4.1 26 76-101 5-30 (208)
233 1zd9_A ADP-ribosylation factor 96.7 0.001 3.6E-08 50.4 3.2 26 76-101 20-45 (188)
234 2fn4_A P23, RAS-related protei 96.6 0.0012 4E-08 48.9 3.3 26 76-101 7-32 (181)
235 2z4s_A Chromosomal replication 96.6 0.0011 3.8E-08 58.4 3.6 35 78-112 130-171 (440)
236 2nzj_A GTP-binding protein REM 96.6 0.0011 3.9E-08 48.8 3.2 25 77-101 3-27 (175)
237 1ypw_A Transitional endoplasmi 96.6 0.00056 1.9E-08 64.9 1.8 39 77-115 510-550 (806)
238 2wji_A Ferrous iron transport 96.6 0.0012 3.9E-08 49.3 3.2 24 77-100 2-25 (165)
239 2dyk_A GTP-binding protein; GT 96.6 0.0013 4.4E-08 47.8 3.4 23 79-101 2-24 (161)
240 2lkc_A Translation initiation 96.6 0.0014 4.7E-08 48.6 3.6 25 76-100 6-30 (178)
241 1jr3_A DNA polymerase III subu 96.6 0.0012 4.2E-08 55.0 3.7 27 78-104 38-64 (373)
242 1n0w_A DNA repair protein RAD5 96.6 0.0011 3.7E-08 52.1 3.1 27 75-101 21-47 (243)
243 1sxj_C Activator 1 40 kDa subu 96.6 0.001 3.5E-08 55.9 3.1 24 80-103 48-71 (340)
244 3c5c_A RAS-like protein 12; GD 96.6 0.0012 4.1E-08 50.3 3.2 26 76-101 19-44 (187)
245 1sxj_E Activator 1 40 kDa subu 96.6 0.00096 3.3E-08 55.6 2.9 23 80-102 38-60 (354)
246 1ek0_A Protein (GTP-binding pr 96.6 0.0012 4E-08 48.2 3.1 25 77-101 2-26 (170)
247 1z0j_A RAB-22, RAS-related pro 96.6 0.0011 3.8E-08 48.5 2.9 26 76-101 4-29 (170)
248 1r2q_A RAS-related protein RAB 96.6 0.001 3.5E-08 48.5 2.7 26 76-101 4-29 (170)
249 2dr3_A UPF0273 protein PH0284; 96.6 0.00099 3.4E-08 52.3 2.8 47 65-111 9-61 (247)
250 3t1o_A Gliding protein MGLA; G 96.6 0.00097 3.3E-08 50.0 2.6 28 76-103 12-39 (198)
251 1w5s_A Origin recognition comp 96.6 0.0048 1.6E-07 52.0 7.2 26 77-102 49-76 (412)
252 3bc1_A RAS-related protein RAB 96.6 0.0013 4.6E-08 49.0 3.4 26 76-101 9-34 (195)
253 3con_A GTPase NRAS; structural 96.6 0.0012 4.1E-08 49.7 3.1 26 76-101 19-44 (190)
254 1z08_A RAS-related protein RAB 96.6 0.0013 4.4E-08 48.2 3.1 26 76-101 4-29 (170)
255 1ky3_A GTP-binding protein YPT 96.6 0.0014 4.7E-08 48.5 3.2 26 76-101 6-31 (182)
256 2chq_A Replication factor C sm 96.6 0.0012 4.2E-08 53.6 3.2 23 80-102 40-62 (319)
257 2h17_A ADP-ribosylation factor 96.6 0.0011 3.7E-08 49.9 2.6 28 74-101 17-44 (181)
258 3pxi_A Negative regulator of g 96.6 0.0016 5.5E-08 60.8 4.3 40 76-115 518-563 (758)
259 2a9k_A RAS-related protein RAL 96.6 0.0014 4.9E-08 48.6 3.2 26 76-101 16-41 (187)
260 2r2a_A Uncharacterized protein 96.5 0.0014 4.7E-08 52.3 3.3 25 77-101 4-28 (199)
261 2f9l_A RAB11B, member RAS onco 96.5 0.0014 4.8E-08 50.2 3.3 25 77-101 4-28 (199)
262 2orw_A Thymidine kinase; TMTK, 96.5 0.0015 5E-08 51.0 3.4 26 77-102 2-27 (184)
263 2efe_B Small GTP-binding prote 96.5 0.0014 4.7E-08 48.7 3.1 26 76-101 10-35 (181)
264 2g6b_A RAS-related protein RAB 96.5 0.0015 5.3E-08 48.4 3.4 26 76-101 8-33 (180)
265 1moz_A ARL1, ADP-ribosylation 96.5 0.0011 3.7E-08 49.5 2.4 25 76-100 16-40 (183)
266 2erx_A GTP-binding protein DI- 96.5 0.0013 4.5E-08 48.0 2.9 24 77-100 2-25 (172)
267 1fzq_A ADP-ribosylation factor 96.5 0.0017 5.9E-08 49.1 3.6 28 74-101 12-39 (181)
268 1g16_A RAS-related protein SEC 96.5 0.0015 5E-08 47.8 3.1 25 77-101 2-26 (170)
269 3tkl_A RAS-related protein RAB 96.5 0.0016 5.5E-08 49.1 3.4 26 76-101 14-39 (196)
270 3kkq_A RAS-related protein M-R 96.5 0.0017 6E-08 48.4 3.5 26 76-101 16-41 (183)
271 2ged_A SR-beta, signal recogni 96.5 0.0017 5.8E-08 49.0 3.5 26 76-101 46-71 (193)
272 3tw8_B RAS-related protein RAB 96.5 0.0014 4.7E-08 48.4 2.9 25 76-100 7-31 (181)
273 1vma_A Cell division protein F 96.5 0.0018 6.1E-08 54.9 3.9 27 76-102 102-128 (306)
274 4bas_A ADP-ribosylation factor 96.5 0.0014 4.9E-08 49.5 2.9 28 73-100 12-39 (199)
275 3oes_A GTPase rhebl1; small GT 96.5 0.0015 5.1E-08 50.1 3.1 26 76-101 22-47 (201)
276 2wsm_A Hydrogenase expression/ 96.5 0.0019 6.6E-08 50.1 3.7 27 76-102 28-54 (221)
277 1mh1_A RAC1; GTP-binding, GTPa 96.5 0.0017 5.7E-08 48.3 3.3 26 76-101 3-28 (186)
278 1sxj_B Activator 1 37 kDa subu 96.5 0.0015 5.3E-08 53.1 3.3 23 80-102 44-66 (323)
279 2fv8_A H6, RHO-related GTP-bin 96.5 0.0016 5.4E-08 50.3 3.2 27 75-101 22-48 (207)
280 4dsu_A GTPase KRAS, isoform 2B 96.5 0.0016 5.4E-08 48.6 3.0 25 77-101 3-27 (189)
281 1nrj_B SR-beta, signal recogni 96.5 0.0018 6.2E-08 50.0 3.5 27 76-102 10-36 (218)
282 1z0f_A RAB14, member RAS oncog 96.5 0.0018 6.1E-08 47.7 3.3 26 76-101 13-38 (179)
283 2o52_A RAS-related protein RAB 96.5 0.0014 4.9E-08 50.3 2.8 25 76-100 23-47 (200)
284 2i3b_A HCR-ntpase, human cance 96.4 0.0016 5.4E-08 51.3 3.1 23 80-102 3-25 (189)
285 1cr0_A DNA primase/helicase; R 96.4 0.0016 5.5E-08 53.5 3.2 38 65-102 22-59 (296)
286 2hf9_A Probable hydrogenase ni 96.4 0.0021 7.2E-08 50.0 3.6 26 77-102 37-62 (226)
287 1p6x_A Thymidine kinase; P-loo 96.4 0.0013 4.3E-08 56.8 2.4 32 73-104 2-33 (334)
288 3bwd_D RAC-like GTP-binding pr 96.4 0.0021 7.3E-08 47.7 3.4 26 76-101 6-31 (182)
289 2gj8_A MNME, tRNA modification 96.4 0.0019 6.5E-08 48.7 3.1 25 77-101 3-27 (172)
290 3q85_A GTP-binding protein REM 96.4 0.002 6.9E-08 47.2 3.2 22 79-100 3-24 (169)
291 2atv_A RERG, RAS-like estrogen 96.4 0.0022 7.6E-08 48.8 3.5 26 76-101 26-51 (196)
292 3e70_C DPA, signal recognition 96.4 0.0024 8.4E-08 54.5 4.1 27 76-102 127-153 (328)
293 3q72_A GTP-binding protein RAD 96.4 0.0018 6.2E-08 47.3 2.9 23 78-100 2-24 (166)
294 2qen_A Walker-type ATPase; unk 96.4 0.0015 5.2E-08 53.6 2.7 32 79-110 32-63 (350)
295 1np6_A Molybdopterin-guanine d 96.4 0.0024 8.2E-08 49.8 3.6 25 78-102 6-30 (174)
296 2v9p_A Replication protein E1; 96.4 0.0021 7.3E-08 54.6 3.6 30 73-102 121-150 (305)
297 2zej_A Dardarin, leucine-rich 96.4 0.0015 5.3E-08 49.4 2.5 23 78-100 2-24 (184)
298 1ojl_A Transcriptional regulat 96.4 0.0022 7.5E-08 53.7 3.6 34 78-111 25-63 (304)
299 2bme_A RAB4A, RAS-related prot 96.3 0.0019 6.6E-08 48.2 2.9 26 76-101 8-33 (186)
300 3lxx_A GTPase IMAP family memb 96.3 0.0019 6.6E-08 51.3 3.1 26 76-101 27-52 (239)
301 2j1l_A RHO-related GTP-binding 96.3 0.002 6.7E-08 50.2 3.0 25 76-100 32-56 (214)
302 2gf0_A GTP-binding protein DI- 96.3 0.0025 8.7E-08 48.0 3.5 25 76-100 6-30 (199)
303 1zcb_A G alpha I/13; GTP-bindi 96.3 0.0021 7E-08 55.7 3.3 33 67-99 22-54 (362)
304 1htw_A HI0065; nucleotide-bind 96.3 0.003 1E-07 48.4 3.9 27 76-102 31-57 (158)
305 2eyu_A Twitching motility prot 96.3 0.0028 9.6E-08 52.2 4.0 28 75-102 22-49 (261)
306 1u0j_A DNA replication protein 96.3 0.0028 9.5E-08 53.1 3.9 26 78-103 104-129 (267)
307 1vg8_A RAS-related protein RAB 96.3 0.0024 8.2E-08 48.6 3.2 26 76-101 6-31 (207)
308 3b9q_A Chloroplast SRP recepto 96.3 0.0038 1.3E-07 52.6 4.8 28 75-102 97-124 (302)
309 1r8s_A ADP-ribosylation factor 96.3 0.0026 9E-08 46.4 3.3 23 79-101 1-23 (164)
310 1rj9_A FTSY, signal recognitio 96.3 0.0025 8.6E-08 53.8 3.6 26 77-102 101-126 (304)
311 1qvr_A CLPB protein; coiled co 96.3 0.0018 6.3E-08 61.4 3.0 25 78-102 191-215 (854)
312 2h57_A ADP-ribosylation factor 96.3 0.0018 6E-08 49.0 2.4 27 76-102 19-45 (190)
313 3cph_A RAS-related protein SEC 96.3 0.0027 9.1E-08 48.6 3.4 27 75-101 17-43 (213)
314 1ksh_A ARF-like protein 2; sma 96.3 0.0025 8.6E-08 47.8 3.2 26 76-101 16-41 (186)
315 1x3s_A RAS-related protein RAB 96.3 0.0023 7.8E-08 48.0 3.0 26 76-101 13-38 (195)
316 1m2o_B GTP-binding protein SAR 96.3 0.0023 7.7E-08 48.9 3.0 25 76-100 21-45 (190)
317 2iwr_A Centaurin gamma 1; ANK 96.3 0.0019 6.5E-08 48.0 2.5 26 76-101 5-30 (178)
318 2fg5_A RAB-22B, RAS-related pr 96.3 0.0022 7.5E-08 48.8 2.9 26 76-101 21-46 (192)
319 1qvr_A CLPB protein; coiled co 96.3 0.0021 7.2E-08 60.9 3.3 37 76-112 585-627 (854)
320 3t5g_A GTP-binding protein RHE 96.2 0.0022 7.5E-08 47.8 2.7 24 77-100 5-28 (181)
321 3reg_A RHO-like small GTPase; 96.2 0.0025 8.6E-08 48.3 3.1 26 76-101 21-46 (194)
322 2px0_A Flagellar biosynthesis 96.2 0.0026 8.8E-08 53.4 3.4 27 76-102 103-129 (296)
323 1svi_A GTP-binding protein YSX 96.2 0.0024 8.2E-08 48.1 2.9 26 76-101 21-46 (195)
324 2gno_A DNA polymerase III, gam 96.2 0.0056 1.9E-07 51.6 5.5 25 78-102 18-42 (305)
325 1lw7_A Transcriptional regulat 96.2 0.0022 7.6E-08 54.7 3.0 28 78-105 170-197 (365)
326 3nbx_X ATPase RAVA; AAA+ ATPas 96.2 0.0016 5.6E-08 58.7 2.2 25 79-103 42-66 (500)
327 1zj6_A ADP-ribosylation factor 96.2 0.0029 9.9E-08 47.7 3.3 25 76-100 14-38 (187)
328 3dz8_A RAS-related protein RAB 96.2 0.0025 8.5E-08 48.3 3.0 27 76-102 21-47 (191)
329 2q3h_A RAS homolog gene family 96.2 0.0028 9.7E-08 48.2 3.3 27 75-101 17-43 (201)
330 1a5t_A Delta prime, HOLB; zinc 96.2 0.0032 1.1E-07 53.0 3.9 30 77-106 23-52 (334)
331 3llu_A RAS-related GTP-binding 96.2 0.0018 6.3E-08 49.5 2.2 28 74-101 16-43 (196)
332 3pqc_A Probable GTP-binding pr 96.2 0.0034 1.2E-07 47.0 3.6 26 76-101 21-46 (195)
333 2hup_A RAS-related protein RAB 96.2 0.0026 8.8E-08 49.0 3.0 26 76-101 27-52 (201)
334 2b6h_A ADP-ribosylation factor 96.2 0.003 1E-07 48.3 3.2 25 76-100 27-51 (192)
335 1yrb_A ATP(GTP)binding protein 96.2 0.0038 1.3E-07 49.7 4.0 27 76-102 12-38 (262)
336 1r6b_X CLPA protein; AAA+, N-t 96.2 0.0036 1.2E-07 58.2 4.3 26 77-102 206-231 (758)
337 1pui_A ENGB, probable GTP-bind 96.2 0.0016 5.4E-08 50.0 1.6 27 75-101 23-49 (210)
338 2f7s_A C25KG, RAS-related prot 96.2 0.0029 9.9E-08 48.8 3.1 26 76-101 23-48 (217)
339 3p32_A Probable GTPase RV1496/ 96.2 0.0035 1.2E-07 53.5 3.9 27 76-102 77-103 (355)
340 1nlf_A Regulatory protein REPA 96.1 0.0027 9.3E-08 51.8 2.9 27 75-101 27-53 (279)
341 3k53_A Ferrous iron transport 96.1 0.0031 1.1E-07 51.3 3.2 25 77-101 2-26 (271)
342 2fh5_B SR-beta, signal recogni 96.1 0.0033 1.1E-07 48.4 3.1 26 76-101 5-30 (214)
343 2cxx_A Probable GTP-binding pr 96.1 0.0029 1E-07 47.2 2.7 23 79-101 2-24 (190)
344 1f6b_A SAR1; gtpases, N-termin 96.1 0.0033 1.1E-07 48.4 3.1 25 76-100 23-47 (198)
345 2zts_A Putative uncharacterize 96.1 0.0049 1.7E-07 48.2 4.2 48 63-110 14-68 (251)
346 1zbd_A Rabphilin-3A; G protein 96.1 0.0037 1.3E-07 47.6 3.3 26 76-101 6-31 (203)
347 2qm8_A GTPase/ATPase; G protei 96.1 0.0041 1.4E-07 53.0 3.9 27 76-102 53-79 (337)
348 4gzl_A RAS-related C3 botulinu 96.1 0.0037 1.3E-07 48.2 3.2 26 76-101 28-53 (204)
349 3gj0_A GTP-binding nuclear pro 96.0 0.0034 1.2E-07 48.7 3.0 29 74-102 11-40 (221)
350 2il1_A RAB12; G-protein, GDP, 96.0 0.0034 1.2E-07 47.8 2.9 25 76-100 24-48 (192)
351 4dkx_A RAS-related protein RAB 96.0 0.0039 1.3E-07 49.7 3.4 28 73-100 8-35 (216)
352 1gwn_A RHO-related GTP-binding 96.0 0.0035 1.2E-07 48.8 3.1 26 76-101 26-51 (205)
353 3tif_A Uncharacterized ABC tra 96.0 0.0032 1.1E-07 51.0 2.8 35 68-102 21-55 (235)
354 3kl4_A SRP54, signal recogniti 96.0 0.0036 1.2E-07 55.7 3.4 26 77-102 96-121 (433)
355 2bcg_Y Protein YP2, GTP-bindin 96.0 0.0036 1.2E-07 47.9 3.0 26 76-101 6-31 (206)
356 2vhj_A Ntpase P4, P4; non- hyd 96.0 0.0038 1.3E-07 53.9 3.4 33 77-109 122-156 (331)
357 2og2_A Putative signal recogni 96.0 0.0046 1.6E-07 53.6 4.0 28 75-102 154-181 (359)
358 3dm5_A SRP54, signal recogniti 96.0 0.0042 1.4E-07 55.5 3.8 26 77-102 99-124 (443)
359 3cbq_A GTP-binding protein REM 96.0 0.003 1E-07 48.6 2.4 25 76-100 21-45 (195)
360 3b85_A Phosphate starvation-in 96.0 0.004 1.4E-07 49.6 3.1 26 76-101 20-45 (208)
361 2www_A Methylmalonic aciduria 96.0 0.005 1.7E-07 52.7 3.9 26 77-102 73-98 (349)
362 3f9v_A Minichromosome maintena 95.9 0.0014 4.9E-08 60.1 0.5 32 77-108 326-357 (595)
363 2f1r_A Molybdopterin-guanine d 95.9 0.002 6.7E-08 50.1 1.2 24 79-102 3-26 (171)
364 2fu5_C RAS-related protein RAB 95.9 0.0026 8.8E-08 47.5 1.8 26 76-101 6-31 (183)
365 2cbz_A Multidrug resistance-as 95.9 0.0036 1.2E-07 50.7 2.8 34 68-101 21-54 (237)
366 2pcj_A ABC transporter, lipopr 95.9 0.0033 1.1E-07 50.4 2.5 33 70-102 22-54 (224)
367 2i1q_A DNA repair and recombin 95.9 0.0039 1.3E-07 52.0 3.0 37 65-101 84-121 (322)
368 1pzn_A RAD51, DNA repair and r 95.9 0.0042 1.5E-07 53.1 3.3 39 64-102 116-155 (349)
369 2fna_A Conserved hypothetical 95.9 0.0054 1.9E-07 50.2 3.8 32 79-110 31-64 (357)
370 2x77_A ADP-ribosylation factor 95.9 0.0034 1.2E-07 47.3 2.3 25 76-100 20-44 (189)
371 2j0v_A RAC-like GTP-binding pr 95.9 0.0051 1.7E-07 47.2 3.4 26 76-101 7-32 (212)
372 2ewv_A Twitching motility prot 95.9 0.0054 1.9E-07 53.0 3.9 27 76-102 134-160 (372)
373 3q3j_B RHO-related GTP-binding 95.9 0.0053 1.8E-07 47.9 3.4 26 76-101 25-50 (214)
374 2b8t_A Thymidine kinase; deoxy 95.9 0.006 2E-07 49.5 3.8 27 76-102 10-36 (223)
375 3sop_A Neuronal-specific septi 95.9 0.0047 1.6E-07 51.1 3.2 25 78-102 2-26 (270)
376 2qu8_A Putative nucleolar GTP- 95.9 0.0054 1.8E-07 48.1 3.4 26 76-101 27-52 (228)
377 1mv5_A LMRA, multidrug resista 95.8 0.0044 1.5E-07 50.2 2.9 35 68-102 18-52 (243)
378 2v3c_C SRP54, signal recogniti 95.8 0.0046 1.6E-07 54.7 3.3 26 77-102 98-123 (432)
379 2onk_A Molybdate/tungstate ABC 95.8 0.0046 1.6E-07 50.4 3.0 26 76-102 23-48 (240)
380 2atx_A Small GTP binding prote 95.8 0.004 1.4E-07 47.0 2.5 26 76-101 16-41 (194)
381 2yhs_A FTSY, cell division pro 95.8 0.0079 2.7E-07 54.6 4.8 28 75-102 290-317 (503)
382 2xtp_A GTPase IMAP family memb 95.8 0.0053 1.8E-07 49.2 3.2 26 76-101 20-45 (260)
383 1b0u_A Histidine permease; ABC 95.8 0.0044 1.5E-07 51.0 2.8 32 71-102 25-56 (262)
384 2cjw_A GTP-binding protein GEM 95.8 0.0064 2.2E-07 46.6 3.5 25 77-101 5-29 (192)
385 3k1j_A LON protease, ATP-depen 95.8 0.0042 1.4E-07 56.7 2.8 28 77-104 59-86 (604)
386 1zu4_A FTSY; GTPase, signal re 95.8 0.0086 3E-07 50.8 4.6 27 76-102 103-129 (320)
387 2d2e_A SUFC protein; ABC-ATPas 95.8 0.0055 1.9E-07 49.9 3.2 32 70-101 21-52 (250)
388 1g6h_A High-affinity branched- 95.7 0.0035 1.2E-07 51.3 2.0 35 68-102 23-57 (257)
389 3a1s_A Iron(II) transport prot 95.7 0.005 1.7E-07 50.3 2.9 25 76-100 3-27 (258)
390 3gfo_A Cobalt import ATP-bindi 95.7 0.0045 1.5E-07 51.6 2.6 35 68-102 24-58 (275)
391 2ff7_A Alpha-hemolysin translo 95.7 0.0047 1.6E-07 50.4 2.7 35 68-102 25-59 (247)
392 2ixe_A Antigen peptide transpo 95.7 0.0049 1.7E-07 51.0 2.8 35 68-102 35-69 (271)
393 4g1u_C Hemin import ATP-bindin 95.7 0.0048 1.7E-07 51.0 2.7 35 68-102 27-61 (266)
394 3hr8_A Protein RECA; alpha and 95.7 0.0065 2.2E-07 52.6 3.6 49 64-112 45-100 (356)
395 2ghi_A Transport protein; mult 95.7 0.005 1.7E-07 50.6 2.8 35 68-102 36-70 (260)
396 2zu0_C Probable ATP-dependent 95.7 0.0061 2.1E-07 50.3 3.3 31 71-101 39-69 (267)
397 2r8r_A Sensor protein; KDPD, P 95.7 0.008 2.7E-07 49.3 4.0 34 77-110 5-43 (228)
398 2p67_A LAO/AO transport system 95.7 0.0071 2.4E-07 51.3 3.8 27 76-102 54-80 (341)
399 2olj_A Amino acid ABC transpor 95.7 0.0051 1.8E-07 50.8 2.8 31 72-102 44-74 (263)
400 3cmu_A Protein RECA, recombina 95.7 0.021 7E-07 59.4 7.6 78 74-166 1423-1514(2050)
401 1ji0_A ABC transporter; ATP bi 95.7 0.0051 1.8E-07 49.8 2.7 31 72-102 26-56 (240)
402 2pze_A Cystic fibrosis transme 95.7 0.0052 1.8E-07 49.4 2.7 35 68-102 24-58 (229)
403 3tqf_A HPR(Ser) kinase; transf 95.7 0.0086 2.9E-07 47.6 3.8 34 76-110 14-47 (181)
404 3cpj_B GTP-binding protein YPT 95.7 0.0065 2.2E-07 47.4 3.1 26 76-101 11-36 (223)
405 3lxw_A GTPase IMAP family memb 95.7 0.0062 2.1E-07 49.2 3.1 26 76-101 19-44 (247)
406 1v5w_A DMC1, meiotic recombina 95.6 0.0082 2.8E-07 51.0 4.0 28 74-101 118-145 (343)
407 3jvv_A Twitching mobility prot 95.6 0.0066 2.3E-07 52.4 3.4 37 77-113 122-162 (356)
408 1vpl_A ABC transporter, ATP-bi 95.6 0.0059 2E-07 50.2 2.8 35 68-102 31-65 (256)
409 1sgw_A Putative ABC transporte 95.6 0.0049 1.7E-07 49.4 2.2 35 68-102 25-59 (214)
410 2yz2_A Putative ABC transporte 95.5 0.0064 2.2E-07 50.1 2.8 35 68-102 23-57 (266)
411 2gza_A Type IV secretion syste 95.5 0.0052 1.8E-07 52.8 2.3 28 76-103 173-200 (361)
412 2qi9_C Vitamin B12 import ATP- 95.5 0.0061 2.1E-07 49.9 2.7 32 71-102 19-50 (249)
413 2yc2_C IFT27, small RAB-relate 95.5 0.0028 9.7E-08 48.0 0.6 26 76-101 18-43 (208)
414 2ihy_A ABC transporter, ATP-bi 95.5 0.0062 2.1E-07 50.7 2.7 32 71-102 40-71 (279)
415 3lda_A DNA repair protein RAD5 95.5 0.0069 2.3E-07 53.2 3.0 37 64-100 163-200 (400)
416 1e2k_A Thymidine kinase; trans 95.5 0.0044 1.5E-07 53.3 1.7 28 76-103 2-29 (331)
417 2j37_W Signal recognition part 95.5 0.0089 3.1E-07 54.1 3.8 27 76-102 99-125 (504)
418 4djt_A GTP-binding nuclear pro 95.5 0.003 1E-07 48.8 0.5 25 76-100 9-33 (218)
419 1j8m_F SRP54, signal recogniti 95.4 0.011 3.7E-07 49.6 3.9 26 77-102 97-122 (297)
420 2zr9_A Protein RECA, recombina 95.4 0.0085 2.9E-07 51.4 3.3 48 64-111 45-99 (349)
421 2nq2_C Hypothetical ABC transp 95.4 0.0069 2.4E-07 49.6 2.6 32 71-102 24-55 (253)
422 2g3y_A GTP-binding protein GEM 95.4 0.0089 3.1E-07 47.3 3.2 25 76-100 35-59 (211)
423 2z43_A DNA repair and recombin 95.4 0.0088 3E-07 50.2 3.3 28 75-102 104-131 (324)
424 3th5_A RAS-related C3 botulinu 94.4 0.0027 9.4E-08 48.6 0.0 25 76-100 28-52 (204)
425 1of1_A Thymidine kinase; trans 95.4 0.0061 2.1E-07 53.4 2.2 28 76-103 47-74 (376)
426 2npi_A Protein CLP1; CLP1-PCF1 95.3 0.0074 2.5E-07 53.8 2.8 27 76-102 136-162 (460)
427 1p9r_A General secretion pathw 95.3 0.013 4.4E-07 51.7 4.1 27 77-103 166-192 (418)
428 3i8s_A Ferrous iron transport 95.3 0.011 3.6E-07 48.6 3.3 25 77-101 2-26 (274)
429 1ls1_A Signal recognition part 95.3 0.013 4.4E-07 49.0 3.8 26 77-102 97-122 (295)
430 3c5h_A Glucocorticoid receptor 95.3 0.014 5E-07 47.0 4.0 26 75-100 16-50 (255)
431 2yyz_A Sugar ABC transporter, 95.2 0.011 3.8E-07 51.2 3.3 30 73-102 24-53 (359)
432 4dhe_A Probable GTP-binding pr 95.2 0.0052 1.8E-07 47.5 1.1 26 76-101 27-52 (223)
433 2pjz_A Hypothetical protein ST 95.2 0.0087 3E-07 49.5 2.5 31 71-102 24-54 (263)
434 3upu_A ATP-dependent DNA helic 95.2 0.012 4E-07 51.8 3.4 23 80-102 47-69 (459)
435 3fvq_A Fe(3+) IONS import ATP- 95.2 0.011 3.7E-07 51.3 3.1 31 72-102 24-54 (359)
436 3b1v_A Ferrous iron uptake tra 95.1 0.012 4.1E-07 48.6 3.2 25 77-101 2-26 (272)
437 1u94_A RECA protein, recombina 95.1 0.012 4.2E-07 50.7 3.3 47 65-111 48-101 (356)
438 2it1_A 362AA long hypothetical 95.1 0.012 4.2E-07 51.0 3.3 31 72-102 23-53 (362)
439 3rlf_A Maltose/maltodextrin im 95.1 0.012 4.2E-07 51.4 3.3 32 71-102 22-53 (381)
440 3l0i_B RAS-related protein RAB 95.1 0.0041 1.4E-07 47.5 0.1 25 76-100 31-55 (199)
441 1z47_A CYSA, putative ABC-tran 95.1 0.012 4.3E-07 50.8 3.2 32 71-102 34-65 (355)
442 2bbs_A Cystic fibrosis transme 95.0 0.01 3.6E-07 49.7 2.6 35 68-102 54-88 (290)
443 1v43_A Sugar-binding transport 95.0 0.013 4.4E-07 51.0 3.3 30 73-102 32-61 (372)
444 1ega_A Protein (GTP-binding pr 95.0 0.011 3.8E-07 49.2 2.7 26 76-101 6-31 (301)
445 2pt7_A CAG-ALFA; ATPase, prote 95.0 0.0069 2.4E-07 51.5 1.5 26 77-102 170-195 (330)
446 3kta_A Chromosome segregation 95.0 0.016 5.3E-07 43.7 3.3 24 80-103 28-51 (182)
447 3iby_A Ferrous iron transport 95.0 0.012 4.2E-07 47.9 2.8 23 79-101 2-24 (256)
448 1tf7_A KAIC; homohexamer, hexa 95.0 0.01 3.4E-07 53.2 2.5 34 65-98 25-59 (525)
449 1g29_1 MALK, maltose transport 94.9 0.014 4.7E-07 50.7 3.2 30 73-102 24-53 (372)
450 1osn_A Thymidine kinase, VZV-T 94.9 0.011 3.9E-07 51.0 2.6 30 76-105 10-40 (341)
451 2rcn_A Probable GTPase ENGC; Y 94.9 0.014 4.6E-07 50.7 3.1 26 77-102 214-239 (358)
452 2xxa_A Signal recognition part 94.9 0.018 6.1E-07 51.0 3.9 27 76-102 98-124 (433)
453 2qnr_A Septin-2, protein NEDD5 94.9 0.012 4.2E-07 49.1 2.8 24 77-100 17-40 (301)
454 1mky_A Probable GTP-binding pr 94.9 0.016 5.3E-07 50.7 3.5 25 77-101 179-203 (439)
455 3r7w_A Gtpase1, GTP-binding pr 94.9 0.015 5E-07 48.5 3.2 25 77-101 2-26 (307)
456 2oap_1 GSPE-2, type II secreti 94.9 0.01 3.4E-07 53.6 2.3 26 77-102 259-284 (511)
457 3nh6_A ATP-binding cassette SU 94.9 0.0077 2.6E-07 51.0 1.4 35 68-102 70-104 (306)
458 2yv5_A YJEQ protein; hydrolase 94.9 0.015 5.1E-07 48.6 3.2 26 76-102 163-188 (302)
459 1xp8_A RECA protein, recombina 94.9 0.015 5.2E-07 50.3 3.3 47 65-111 59-112 (366)
460 1nij_A Hypothetical protein YJ 94.9 0.015 5.2E-07 48.8 3.2 25 77-101 3-27 (318)
461 1xx6_A Thymidine kinase; NESG, 94.9 0.021 7.3E-07 45.0 3.9 27 76-102 6-32 (191)
462 2qag_B Septin-6, protein NEDD5 94.9 0.015 5.1E-07 51.7 3.2 26 76-101 38-65 (427)
463 3bh0_A DNAB-like replicative h 94.8 0.019 6.5E-07 48.1 3.7 48 63-110 53-105 (315)
464 3tui_C Methionine import ATP-b 94.8 0.016 5.5E-07 50.4 3.3 35 68-102 44-78 (366)
465 2aka_B Dynamin-1; fusion prote 94.8 0.016 5.4E-07 47.0 3.0 26 76-101 24-49 (299)
466 3e1s_A Exodeoxyribonuclease V, 94.8 0.017 5.9E-07 52.7 3.6 25 78-102 204-228 (574)
467 3d31_A Sulfate/molybdate ABC t 94.8 0.01 3.5E-07 51.2 2.0 30 73-102 21-50 (348)
468 3gd7_A Fusion complex of cysti 94.8 0.016 5.4E-07 50.8 3.1 34 68-101 37-70 (390)
469 2r6a_A DNAB helicase, replicat 94.7 0.02 6.9E-07 50.3 3.7 46 65-110 190-241 (454)
470 1u0l_A Probable GTPase ENGC; p 94.7 0.014 4.7E-07 48.7 2.5 25 77-101 168-192 (301)
471 1tq4_A IIGP1, interferon-induc 94.7 0.017 5.9E-07 50.9 3.2 24 77-100 68-91 (413)
472 1h65_A Chloroplast outer envel 94.5 0.019 6.6E-07 46.5 2.9 25 77-101 38-62 (270)
473 1jwy_B Dynamin A GTPase domain 94.5 0.028 9.5E-07 46.0 3.9 26 76-101 22-47 (315)
474 2wkq_A NPH1-1, RAS-related C3 94.5 0.024 8.2E-07 46.2 3.4 26 76-101 153-178 (332)
475 3def_A T7I23.11 protein; chlor 94.5 0.021 7.1E-07 46.2 3.0 26 76-101 34-59 (262)
476 1oxx_K GLCV, glucose, ABC tran 94.5 0.011 3.6E-07 51.1 1.3 31 72-102 25-55 (353)
477 1tf7_A KAIC; homohexamer, hexa 94.5 0.023 7.7E-07 50.9 3.5 29 74-102 277-305 (525)
478 1ni3_A YCHF GTPase, YCHF GTP-b 94.5 0.023 8E-07 49.7 3.5 27 74-100 16-42 (392)
479 2ffh_A Protein (FFH); SRP54, s 94.4 0.026 9E-07 49.9 3.8 26 77-102 97-122 (425)
480 2e87_A Hypothetical protein PH 94.4 0.023 7.7E-07 48.3 3.2 26 76-101 165-190 (357)
481 3ozx_A RNAse L inhibitor; ATP 94.4 0.023 7.8E-07 51.6 3.4 30 73-102 20-49 (538)
482 3o47_A ADP-ribosylation factor 94.4 0.019 6.6E-07 48.4 2.6 25 76-100 163-187 (329)
483 3b5x_A Lipid A export ATP-bind 94.4 0.022 7.5E-07 51.7 3.1 35 68-102 359-393 (582)
484 3qf4_B Uncharacterized ABC tra 94.3 0.021 7.2E-07 52.1 3.0 35 68-102 371-405 (598)
485 3t5d_A Septin-7; GTP-binding p 94.3 0.021 7.1E-07 46.5 2.7 23 77-99 7-29 (274)
486 1ko7_A HPR kinase/phosphatase; 94.3 0.032 1.1E-06 47.7 3.9 33 77-110 143-175 (314)
487 4ag6_A VIRB4 ATPase, type IV s 94.3 0.024 8.3E-07 48.4 3.1 25 77-101 34-58 (392)
488 2obl_A ESCN; ATPase, hydrolase 94.3 0.028 9.4E-07 48.3 3.4 31 73-103 66-96 (347)
489 3io5_A Recombination and repai 94.2 0.026 8.9E-07 48.7 3.2 35 76-111 27-68 (333)
490 1wf3_A GTP-binding protein; GT 94.2 0.026 8.9E-07 47.2 3.1 26 76-101 5-30 (301)
491 2qag_C Septin-7; cell cycle, c 94.1 0.024 8.1E-07 50.0 2.7 25 77-101 30-54 (418)
492 2dpy_A FLII, flagellum-specifi 94.1 0.031 1.1E-06 49.4 3.5 31 73-103 152-182 (438)
493 2dby_A GTP-binding protein; GD 94.0 0.026 8.8E-07 48.9 2.8 23 79-101 2-24 (368)
494 2q6t_A DNAB replication FORK h 94.0 0.035 1.2E-06 48.6 3.5 46 65-110 187-238 (444)
495 3dpu_A RAB family protein; roc 93.9 0.035 1.2E-06 49.7 3.5 28 74-101 37-64 (535)
496 4dcu_A GTP-binding protein ENG 93.9 0.028 9.6E-07 49.3 2.9 25 76-100 21-45 (456)
497 3b60_A Lipid A export ATP-bind 93.9 0.019 6.4E-07 52.1 1.8 34 69-102 360-393 (582)
498 2yl4_A ATP-binding cassette SU 93.9 0.028 9.6E-07 51.1 2.9 34 69-102 361-394 (595)
499 1z6t_A APAF-1, apoptotic prote 93.9 0.035 1.2E-06 49.4 3.5 23 78-100 147-169 (591)
500 1yqt_A RNAse L inhibitor; ATP- 93.9 0.033 1.1E-06 50.4 3.2 29 74-102 43-71 (538)
No 1
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.95 E-value=2.8e-28 Score=200.20 Aligned_cols=100 Identities=21% Similarity=0.334 Sum_probs=93.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCC
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY 155 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~ 155 (177)
.++.+|+|+|||||||+|+|+.|+++||++|||+||++|+++..++++|+.+++++++|++|||+++.+++.++|.+..+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~~~~~ 106 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMIKLVD 106 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHhhccc
Confidence 46678889999999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred CCcceEEEeCCCCCHHHHHhc
Q 030464 156 RGEIGFILDGLPRSRIQATIS 176 (177)
Q Consensus 156 ~~~~G~ILDGfPrt~~QAe~L 176 (177)
...||||||||||..||+.|
T Consensus 107 -~~~g~ilDGfPRt~~Qa~~l 126 (217)
T 3umf_A 107 -KNCHFLIDGYPRELDQGIKF 126 (217)
T ss_dssp -TCSEEEEETBCSSHHHHHHH
T ss_pred -cccCcccccCCCcHHHHHHH
Confidence 46899999999999999876
No 2
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=99.95 E-value=1.9e-28 Score=199.17 Aligned_cols=93 Identities=30% Similarity=0.456 Sum_probs=88.6
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCc
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~ 158 (177)
|+|+|+|||||||+|+|+.|+++||++|||+||++|+++..++++|+.++.++.+|++|||+++.+++++++.+ .
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~-----~ 75 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPK-----H 75 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCS-----S
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhcc-----C
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999865 3
Q ss_pred ceEEEeCCCCCHHHHHhc
Q 030464 159 IGFILDGLPRSRIQATIS 176 (177)
Q Consensus 159 ~G~ILDGfPrt~~QAe~L 176 (177)
.||||||||||..||+.|
T Consensus 76 ~~~ilDGfPRt~~Qa~~l 93 (206)
T 3sr0_A 76 GNVIFDGFPRTVKQAEAL 93 (206)
T ss_dssp SCEEEESCCCSHHHHHHH
T ss_pred CceEecCCchhHHHHHHH
Confidence 589999999999999976
No 3
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=99.91 E-value=9.5e-25 Score=181.07 Aligned_cols=97 Identities=25% Similarity=0.518 Sum_probs=91.5
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCC
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRG 157 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~ 157 (177)
.++..|+|+|||||||+|+.|++++|++||++++++|+++...+++|+.+++++.+|+.+|++++.++++++|.+.++
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~-- 85 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADC-- 85 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGG--
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCccc--
Confidence 468899999999999999999999999999999999999999999999999999999999999999999999998775
Q ss_pred cceEEEeCCCCCHHHHHhc
Q 030464 158 EIGFILDGLPRSRIQATIS 176 (177)
Q Consensus 158 ~~G~ILDGfPrt~~QAe~L 176 (177)
.+||||||||||..||+.|
T Consensus 86 ~~g~ILDGfPRt~~Qa~~L 104 (230)
T 3gmt_A 86 ANGYLFDGFPRTIAQADAM 104 (230)
T ss_dssp TTCEEEESCCCSHHHHHHH
T ss_pred CCCeEecCCCCcHHHHHHH
Confidence 5799999999999999875
No 4
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.85 E-value=3.5e-21 Score=158.26 Aligned_cols=99 Identities=26% Similarity=0.442 Sum_probs=92.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCC
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY 155 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~ 155 (177)
.++++|+|+|+|||||||+|+.|++++|++|+++++++|+++..++++++.+++++.+|..+|++++..++..++....+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~~ 106 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQC 106 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTSGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcccc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999987653
Q ss_pred CCcceEEEeCCCCCHHHHHhc
Q 030464 156 RGEIGFILDGLPRSRIQATIS 176 (177)
Q Consensus 156 ~~~~G~ILDGfPrt~~QAe~L 176 (177)
..||||||||++..|++.|
T Consensus 107 --~~~~ildg~p~~~~q~~~l 125 (243)
T 3tlx_A 107 --KKGFILDGYPRNVKQAEDL 125 (243)
T ss_dssp --SSEEEEESCCCSHHHHHHH
T ss_pred --cCCEEecCCCCcHHHHHHH
Confidence 6899999999999999864
No 5
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.81 E-value=4.5e-20 Score=149.76 Aligned_cols=101 Identities=31% Similarity=0.505 Sum_probs=90.4
Q ss_pred ccCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHcc
Q 030464 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDG 153 (177)
Q Consensus 74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~ 153 (177)
.+.++++|+|+|+|||||||+|+.|++.+++.++++++++++++...+++++.+++++..|..++++++.+++..++...
T Consensus 12 ~~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~ 91 (233)
T 1ak2_A 12 ESPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETP 91 (233)
T ss_dssp --CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSG
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhcc
Confidence 34567899999999999999999999999999999999999988778889999999999999999999999999999876
Q ss_pred CCCCcceEEEeCCCCCHHHHHhc
Q 030464 154 YYRGEIGFILDGLPRSRIQATIS 176 (177)
Q Consensus 154 ~~~~~~G~ILDGfPrt~~QAe~L 176 (177)
.+ ..|||+||||++..|++.|
T Consensus 92 ~~--~~g~ildg~~~~~~~~~~l 112 (233)
T 1ak2_A 92 PC--KNGFLLDGFPRTVRQAEML 112 (233)
T ss_dssp GG--TTCEEEESCCCSHHHHHHH
T ss_pred cc--cCcEEEeCCCCCHHHHHHH
Confidence 53 5799999999999988754
No 6
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.81 E-value=4.4e-20 Score=148.31 Aligned_cols=98 Identities=23% Similarity=0.462 Sum_probs=87.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~ 156 (177)
+++.|+|+|+|||||||+|+.|++.+|++|+++++++++.....+++++.+++.+.+|+.+|++++.+++..++....
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~-- 81 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGV-- 81 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTT--
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccc--
Confidence 567899999999999999999999999999999999999888888899999999999999999999999999888754
Q ss_pred CcceEEEeCCCCCHHHHHhc
Q 030464 157 GEIGFILDGLPRSRIQATIS 176 (177)
Q Consensus 157 ~~~G~ILDGfPrt~~QAe~L 176 (177)
...|||+||||++..|++.|
T Consensus 82 ~~~~~i~dg~~~~~~~~~~l 101 (217)
T 3be4_A 82 CVNGFVLDGFPRTIPQAEGL 101 (217)
T ss_dssp TTTCEEEESCCCSHHHHHHH
T ss_pred cCCCEEEeCCCCCHHHHHHH
Confidence 36799999999998888754
No 7
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.81 E-value=6.6e-20 Score=146.09 Aligned_cols=96 Identities=27% Similarity=0.519 Sum_probs=89.3
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCc
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~ 158 (177)
++|+|+|+|||||||+|+.|++.+|++++++++++++.+...++.++.+++.+..|..+|++++..++.+++....+ .
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~--~ 78 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDC--E 78 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGG--T
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccc--c
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999987653 6
Q ss_pred ceEEEeCCCCCHHHHHhc
Q 030464 159 IGFILDGLPRSRIQATIS 176 (177)
Q Consensus 159 ~G~ILDGfPrt~~QAe~L 176 (177)
.+|||||||++..|++.+
T Consensus 79 ~~~ildg~p~~~~~~~~~ 96 (216)
T 3dl0_A 79 RGFLLDGFPRTVAQAEAL 96 (216)
T ss_dssp TCEEEESCCCSHHHHHHH
T ss_pred CCEEEeCCCCCHHHHHHH
Confidence 799999999999998764
No 8
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.80 E-value=1.4e-19 Score=145.10 Aligned_cols=98 Identities=26% Similarity=0.459 Sum_probs=88.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHH-ccC
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLE-DGY 154 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~-~~~ 154 (177)
.+++.|+|+|+|||||||+|+.|++.++++++++++++++.+...+++++.+++.+..|..+|++++..++.+++. ...
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~ 81 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPA 81 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhccc
Confidence 3568899999999999999999999999999999999999888888999999999999999999999999999887 433
Q ss_pred CCCcceEEEeCCCCCHHHHHh
Q 030464 155 YRGEIGFILDGLPRSRIQATI 175 (177)
Q Consensus 155 ~~~~~G~ILDGfPrt~~QAe~ 175 (177)
...|||+||||++..|++.
T Consensus 82 --~~~~~i~dg~~~~~~~~~~ 100 (220)
T 1aky_A 82 --CKNGFILDGFPRTIPQAEK 100 (220)
T ss_dssp --GGSCEEEESCCCSHHHHHH
T ss_pred --cCCCeEEeCCCCCHHHHHH
Confidence 3579999999999988764
No 9
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.80 E-value=1.3e-19 Score=144.19 Aligned_cols=96 Identities=27% Similarity=0.507 Sum_probs=89.2
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCc
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~ 158 (177)
++|+|+|+|||||||+|+.|++.+|++++++++++++.+...++.++.+++.+..|..+|++++.+++.+++....+ .
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~--~ 78 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDC--Q 78 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGG--T
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccC--C
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999987653 5
Q ss_pred ceEEEeCCCCCHHHHHhc
Q 030464 159 IGFILDGLPRSRIQATIS 176 (177)
Q Consensus 159 ~G~ILDGfPrt~~QAe~L 176 (177)
.+|||||||++..|++.|
T Consensus 79 ~~~ildg~p~~~~~~~~l 96 (216)
T 3fb4_A 79 KGFLLDGFPRTVAQADAL 96 (216)
T ss_dssp TCEEEESCCCSHHHHHHH
T ss_pred CcEEEeCCCCCHHHHHHH
Confidence 799999999999998754
No 10
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.78 E-value=1.6e-19 Score=144.33 Aligned_cols=96 Identities=27% Similarity=0.518 Sum_probs=86.8
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCc
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~ 158 (177)
++|+|+|+|||||||+|+.|++.+|++++++++++++.+...+++++.+++.+..|..+|++++.+++..++.+..+ .
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~--~ 78 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDC--R 78 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGG--G
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcccc--C
Confidence 47999999999999999999999999999999999998777788888899999999999999999999999887642 5
Q ss_pred ceEEEeCCCCCHHHHHhc
Q 030464 159 IGFILDGLPRSRIQATIS 176 (177)
Q Consensus 159 ~G~ILDGfPrt~~QAe~L 176 (177)
.|||+||||++..|++.|
T Consensus 79 ~~~i~dg~~~~~~~~~~l 96 (214)
T 1e4v_A 79 NGFLLDGFPRTIPQADAM 96 (214)
T ss_dssp GCEEEESCCCSHHHHHHH
T ss_pred CCEEEeCCCCCHHHHHHH
Confidence 799999999999988754
No 11
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.77 E-value=3.7e-19 Score=142.70 Aligned_cols=99 Identities=24% Similarity=0.428 Sum_probs=87.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~ 156 (177)
+++.|+|+|+|||||||+|+.|++.+++.+++++++++.....++..|+.+++.+.+|+.+|++.+..++.+++....+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~- 82 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDA- 82 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHH-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhccc-
Confidence 5678999999999999999999999999999999999987777788999999999999999999999988888876543
Q ss_pred CcceEEEeCCCCCHHHHHhc
Q 030464 157 GEIGFILDGLPRSRIQATIS 176 (177)
Q Consensus 157 ~~~G~ILDGfPrt~~QAe~L 176 (177)
...||||||||++..|++.|
T Consensus 83 ~~~~~vidg~~~~~~~~~~l 102 (222)
T 1zak_A 83 QENGWLLDGYPRSYSQAMAL 102 (222)
T ss_dssp HHTCEEEESCCCSHHHHHHH
T ss_pred cCCcEEEECCCCCHHHHHHH
Confidence 24699999999999887654
No 12
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.76 E-value=1.7e-18 Score=139.92 Aligned_cols=95 Identities=23% Similarity=0.430 Sum_probs=86.4
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCc
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~ 158 (177)
+.|+|+|+|||||||+|+.|++.+|++++++++++++.+...++.++.+++.+..|..+|++++.+++..++.... .
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~---g 77 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKG---K 77 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHC---T
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhccc---C
Confidence 4699999999999999999999999999999999999888888999999999999999999999999999887642 4
Q ss_pred ceEEEeCCCCCHHHHHhc
Q 030464 159 IGFILDGLPRSRIQATIS 176 (177)
Q Consensus 159 ~G~ILDGfPrt~~QAe~L 176 (177)
.+||+||||++..|++.|
T Consensus 78 ~~vIlDg~~~~~~~~~~l 95 (223)
T 2xb4_A 78 DGWLLDGFPRNTVQAQKL 95 (223)
T ss_dssp TCEEEESCCCSHHHHHHH
T ss_pred CeEEEeCCcCCHHHHHHH
Confidence 699999999998887754
No 13
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.76 E-value=2.2e-18 Score=136.06 Aligned_cols=99 Identities=30% Similarity=0.471 Sum_probs=87.9
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccC
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY 154 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~ 154 (177)
+.+++.|+|+|+|||||||+|+.|++.+|++++++++++++.+...+..++.+++.+..|..++++.+..++.+++....
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~ 96 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPD 96 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHhccc
Confidence 46778999999999999999999999999999999999999777788899999999999999999999999988877643
Q ss_pred CCCcceEEEeCCCCCHHHHHh
Q 030464 155 YRGEIGFILDGLPRSRIQATI 175 (177)
Q Consensus 155 ~~~~~G~ILDGfPrt~~QAe~ 175 (177)
...+||+||+|++..|++.
T Consensus 97 --~~~~vIldg~~~~~~~~~~ 115 (201)
T 2cdn_A 97 --AANGFILDGYPRSVEQAKA 115 (201)
T ss_dssp --GTTCEEEESCCCSHHHHHH
T ss_pred --CCCeEEEECCCCCHHHHHH
Confidence 3578999999999887754
No 14
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.73 E-value=5.6e-18 Score=136.43 Aligned_cols=98 Identities=18% Similarity=0.368 Sum_probs=86.0
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCC
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY 155 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~ 155 (177)
.+++.|+|+|+|||||||+|+.|++.+|+++++++++++.....++++|+.+++++..|..++++....++.+++.+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~-- 82 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNL-- 82 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTC--
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc--
Confidence 466889999999999999999999999999999999999887777888999999999999999998888888888764
Q ss_pred CCcceEEEeCCCCCHHHHHhc
Q 030464 156 RGEIGFILDGLPRSRIQATIS 176 (177)
Q Consensus 156 ~~~~G~ILDGfPrt~~QAe~L 176 (177)
...+||+||||++..|++.|
T Consensus 83 -~~~~~vid~~~~~~~~~~~l 102 (227)
T 1zd8_A 83 -TQYSWLLDGFPRTLPQAEAL 102 (227)
T ss_dssp -TTSCEEEESCCCSHHHHHHH
T ss_pred -cCCCEEEeCCCCCHHHHHHH
Confidence 24689999999999987643
No 15
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.73 E-value=1.2e-17 Score=130.00 Aligned_cols=99 Identities=19% Similarity=0.366 Sum_probs=86.6
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCC
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY 155 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~ 155 (177)
.+++.|+|+|+|||||||+|+.|++.+|+++++++++++......+..++.+++.+..|+.++++++..++.+.+.....
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~ 86 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKVN 86 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhccc
Confidence 46678999999999999999999999999999999999987777788899999999999999999888888887775432
Q ss_pred CCcceEEEeCCCCCHHHHHh
Q 030464 156 RGEIGFILDGLPRSRIQATI 175 (177)
Q Consensus 156 ~~~~G~ILDGfPrt~~QAe~ 175 (177)
...++|+||||++..|++.
T Consensus 87 -~~~~vi~d~~~~~~~~~~~ 105 (196)
T 2c95_A 87 -TSKGFLIDGYPREVQQGEE 105 (196)
T ss_dssp -TCSCEEEESCCCSHHHHHH
T ss_pred -cCCcEEEeCCCCCHHHHHH
Confidence 3579999999999988754
No 16
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.72 E-value=1.4e-17 Score=131.15 Aligned_cols=101 Identities=25% Similarity=0.367 Sum_probs=84.0
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhcc-CCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHcc
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL-SPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDG 153 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el-~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~ 153 (177)
+.+++.|+|+|+|||||||+|+.|++.+|++++++++++++.. ...+.+++.+++.+..|...|+++...++.+.+...
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~ 91 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDN 91 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhh
Confidence 4567789999999999999999999999999999999999864 356778888999999999999988888887776543
Q ss_pred CCCCcceEEEeCCCCCHHHHHh
Q 030464 154 YYRGEIGFILDGLPRSRIQATI 175 (177)
Q Consensus 154 ~~~~~~G~ILDGfPrt~~QAe~ 175 (177)
...+..+||+||+|++.+++..
T Consensus 92 l~~g~~~~i~dg~~~~~~~~~~ 113 (203)
T 1ukz_A 92 VKANKHKFLIDGFPRKMDQAIS 113 (203)
T ss_dssp HHTTCCEEEEETCCCSHHHHHH
T ss_pred hccCCCeEEEeCCCCCHHHHHH
Confidence 2112368999999999988764
No 17
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.70 E-value=3.4e-17 Score=127.61 Aligned_cols=98 Identities=26% Similarity=0.411 Sum_probs=85.1
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~ 156 (177)
+++.|+|+|+|||||||+|+.|++.+|+++++++++++.+....++.++.+++.+..|..++++.+..++.+.+.....
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~- 89 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASLG- 89 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTT-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcccc-
Confidence 4578999999999999999999999999999999999988766778888999999999999999988888887765432
Q ss_pred CcceEEEeCCCCCHHHHHh
Q 030464 157 GEIGFILDGLPRSRIQATI 175 (177)
Q Consensus 157 ~~~G~ILDGfPrt~~QAe~ 175 (177)
...+||+||+|++..|++.
T Consensus 90 ~~~~vi~dg~~~~~~~~~~ 108 (199)
T 2bwj_A 90 DTRGFLIDGYPREVKQGEE 108 (199)
T ss_dssp SCSCEEEETCCSSHHHHHH
T ss_pred cCccEEEeCCCCCHHHHHH
Confidence 3578999999999888654
No 18
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.69 E-value=1.1e-16 Score=123.48 Aligned_cols=97 Identities=20% Similarity=0.301 Sum_probs=85.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~ 156 (177)
.+..|+|+|+|||||||+|+.|++.+|+++++++++++++....++.++.+.+.+..|...++++...++.+.+...
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~--- 81 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDAN--- 81 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTS---
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc---
Confidence 35689999999999999999999999999999999999887677888999999999999999999888988887764
Q ss_pred CcceEEEeCCCCCHHHHHhc
Q 030464 157 GEIGFILDGLPRSRIQATIS 176 (177)
Q Consensus 157 ~~~G~ILDGfPrt~~QAe~L 176 (177)
...++|+||+|++..+.+.+
T Consensus 82 ~~~~vi~d~~~~~~~~~~~~ 101 (194)
T 1qf9_A 82 QGKNFLVDGFPRNEENNNSW 101 (194)
T ss_dssp TTCCEEEETCCCSHHHHHHH
T ss_pred CCCCEEEeCcCCCHHHHHHH
Confidence 25789999999998877543
No 19
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.68 E-value=7.3e-17 Score=124.94 Aligned_cols=93 Identities=29% Similarity=0.503 Sum_probs=80.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCC
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY 155 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~ 155 (177)
.+++.|+|+|+|||||||+|+.|++.+|++++++++++++.+...++.++.+++.+.+|..++++.+..++.+.+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~---- 77 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELA---- 77 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCC----
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhc----
Confidence 3567899999999999999999999999999999999998877778889999999999999999988887776542
Q ss_pred CCcceEEEeCCCCCHHHHHh
Q 030464 156 RGEIGFILDGLPRSRIQATI 175 (177)
Q Consensus 156 ~~~~G~ILDGfPrt~~QAe~ 175 (177)
.|+|+||+|++..|++.
T Consensus 78 ---~~~i~dg~~~~~~~~~~ 94 (186)
T 3cm0_A 78 ---ERVIFDGFPRTLAQAEA 94 (186)
T ss_dssp ---SEEEEESCCCSHHHHHH
T ss_pred ---CCEEEeCCCCCHHHHHH
Confidence 35999999999887653
No 20
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.68 E-value=2.2e-16 Score=122.03 Aligned_cols=98 Identities=19% Similarity=0.376 Sum_probs=79.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccC-CCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccC-
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS-PRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY- 154 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~-~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~- 154 (177)
+++.|+|+|+|||||||+|+.|++.+|+++++.++++++... ..+.+++.+++.+..|..+++++...++...+.+..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 81 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMA 81 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhc
Confidence 567899999999999999999999999999999999988664 456678888888999999998887777766554321
Q ss_pred -CCCcceEEEeCCCCCHHHHH
Q 030464 155 -YRGEIGFILDGLPRSRIQAT 174 (177)
Q Consensus 155 -~~~~~G~ILDGfPrt~~QAe 174 (177)
.....+||+||+|++..|.+
T Consensus 82 ~~~~~~~vi~dg~~~~~~~~~ 102 (196)
T 1tev_A 82 ANAQKNKFLIDGFPRNQDNLQ 102 (196)
T ss_dssp HCTTCCEEEEESCCCSHHHHH
T ss_pred cccCCCeEEEeCCCCCHHHHH
Confidence 01256899999999988765
No 21
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.53 E-value=4.2e-14 Score=115.10 Aligned_cols=97 Identities=18% Similarity=0.341 Sum_probs=81.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~ 156 (177)
++..|+|+|+|||||||+++.|++.+|+.+++.|++++........++..+...+.++..+|+..+.+.+...+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~--- 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR--- 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC---
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc---
Confidence 46789999999999999999999999999999999988765445667888888888899999988888887777653
Q ss_pred CcceEEEeCCCCCHHHHHhc
Q 030464 157 GEIGFILDGLPRSRIQATIS 176 (177)
Q Consensus 157 ~~~G~ILDGfPrt~~QAe~L 176 (177)
...+||+||+|++..|++.+
T Consensus 103 ~~~~~il~g~~~~~~~~~~l 122 (246)
T 2bbw_A 103 RGQHWLLDGFPRTLGQAEAL 122 (246)
T ss_dssp TTSCEEEESCCCSHHHHHHH
T ss_pred CCCeEEEECCCCCHHHHHHH
Confidence 24689999999998776643
No 22
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.38 E-value=4.7e-13 Score=100.63 Aligned_cols=90 Identities=21% Similarity=0.213 Sum_probs=63.4
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCC----CchHHHHHHHHHcCCcchHHHHHHHHHHHHHccC
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPR----SSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY 154 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~----s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~ 154 (177)
+.|+|+|+|||||||+|+.| +.+|++++++++++++..... ............. .+++...+++.+.+...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~- 76 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREI---YGDGVVARLCVEELGTS- 76 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHH---HCTTHHHHHHHHHHCSC-
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhh---CCHHHHHHHHHHHHHhc-
Confidence 57899999999999999999 999999999999999865322 2333333333332 12334455555555432
Q ss_pred CCCcceEEEeCCCCCHHHHHhc
Q 030464 155 YRGEIGFILDGLPRSRIQATIS 176 (177)
Q Consensus 155 ~~~~~G~ILDGfPrt~~QAe~L 176 (177)
...+||+||+ ++..|.+.|
T Consensus 77 --~~~~vi~dg~-~~~~~~~~l 95 (179)
T 3lw7_A 77 --NHDLVVFDGV-RSLAEVEEF 95 (179)
T ss_dssp --CCSCEEEECC-CCHHHHHHH
T ss_pred --CCCeEEEeCC-CCHHHHHHH
Confidence 3578999999 988887654
No 23
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.25 E-value=3.1e-12 Score=97.54 Aligned_cols=93 Identities=15% Similarity=0.093 Sum_probs=59.2
Q ss_pred CeEEEEEcCCCCCchHHHHHHHH-HhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCC
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSK-LLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk-~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~ 156 (177)
+..|+|.|+|||||||+|+.|++ .+|+.+++. |.++..+...+. +. ...+...+.....+++.+++...+....
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~-d~~r~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~-- 76 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINR-DDYRQSIMAHEE-RD-EYKYTKKKEGIVTGMQFDTAKSILYGGD-- 76 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECH-HHHHHHHTTSCC-GG-GCCCCHHHHHHHHHHHHHHHHHHHTSCS--
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecH-HHHHHHhhCCCc-cc-hhhhchhhhhHHHHHHHHHHHHHHhhcc--
Confidence 45789999999999999999999 689999997 556654433211 00 0000001112234455566666664312
Q ss_pred CcceEEEeCCCCCHHHHHh
Q 030464 157 GEIGFILDGLPRSRIQATI 175 (177)
Q Consensus 157 ~~~G~ILDGfPrt~~QAe~ 175 (177)
...++|+||++.+..+.+.
T Consensus 77 ~g~~vi~d~~~~~~~~~~~ 95 (181)
T 1ly1_A 77 SVKGVIISDTNLNPERRLA 95 (181)
T ss_dssp SCCEEEECSCCCSHHHHHH
T ss_pred CCCeEEEeCCCCCHHHHHH
Confidence 3579999999998766543
No 24
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.12 E-value=4.5e-11 Score=93.78 Aligned_cols=91 Identities=16% Similarity=0.212 Sum_probs=64.4
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHH-------
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSK------- 148 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~------- 148 (177)
.+++.|+|+|+|||||||+|+.|++.++..++++ +++++. ...+..++.+++++..+..++++.+..+...
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~-~~~~~~-~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV-KHLYFP-NRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMN 85 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE-EEEESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE-EEEecC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999999999888888 556643 3346778888888877777766544333321
Q ss_pred HHHccCCCCcceEEEeCCCCC
Q 030464 149 RLEDGYYRGEIGFILDGLPRS 169 (177)
Q Consensus 149 ~L~~~~~~~~~G~ILDGfPrt 169 (177)
.+...- .....+|+|+++.+
T Consensus 86 ~i~~~l-~~~~~vi~D~~~~~ 105 (212)
T 2wwf_A 86 EIKSLL-LKGIWVVCDRYAYS 105 (212)
T ss_dssp HHHHHH-HHTCEEEEECCHHH
T ss_pred HHHHHH-hCCCEEEEecchhh
Confidence 111110 02358999999865
No 25
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.07 E-value=7.1e-10 Score=85.27 Aligned_cols=57 Identities=14% Similarity=0.041 Sum_probs=46.2
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh---CCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHH
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDI 141 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~l---gl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdel 141 (177)
+.|+|+|+|||||||+|+.|++.+ |++++++++ ...+..++.+++.+..|...++..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~------~~~~~~~~~i~~~~~~g~~~~~~~ 60 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE------PGGTKVGEVLREILLTEELDERTE 60 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC------CCCCchHHHHHHHHcCCCCCHHHH
Confidence 468999999999999999999998 999999853 234567778888888887777643
No 26
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.06 E-value=7.2e-11 Score=97.95 Aligned_cols=93 Identities=15% Similarity=0.110 Sum_probs=57.9
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh-CCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCC
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~l-gl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~ 156 (177)
+..|+|+|+|||||||+|+.|++++ |+.+|+.+ .++..+...+. +.. ..+...++..+.+++.+++...+.+..
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D-~~r~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~-- 76 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD-DYRQSIMAHEE-RDE-YKYTKKKEGIVTGMQFDTAKSILYGGD-- 76 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH-HHHHHHTTSCC-CC----CCHHHHHHHHHHHHHHHHHHTTSCT--
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc-HHHHHhccCCc-ccc-cccchhhhhHHHHHHHHHHHHHHhhcc--
Confidence 3578999999999999999999985 99999997 56655432111 000 000011112233445555555553211
Q ss_pred CcceEEEeCCCCCHHHHHh
Q 030464 157 GEIGFILDGLPRSRIQATI 175 (177)
Q Consensus 157 ~~~G~ILDGfPrt~~QAe~ 175 (177)
...++|+||++.+..+.+.
T Consensus 77 ~g~~vi~d~~~~~~~~~~~ 95 (301)
T 1ltq_A 77 SVKGVIISDTNLNPERRLA 95 (301)
T ss_dssp TCCEEEECSCCCCHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHH
Confidence 2578999999998766543
No 27
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.04 E-value=2.7e-10 Score=87.35 Aligned_cols=39 Identities=13% Similarity=0.109 Sum_probs=34.7
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhC-----CCeeeCchhhhhcc
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVRQDL 117 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lg-----l~~Is~~dLlr~el 117 (177)
+.|+|+|+|||||||+|+.|++.++ +.+++.++++++.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~ 45 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATA 45 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHH
Confidence 5799999999999999999999998 88998888887544
No 28
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.03 E-value=1.1e-09 Score=85.99 Aligned_cols=84 Identities=12% Similarity=0.096 Sum_probs=55.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHH---HHHHHHHcc
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFG---LLSKRLEDG 153 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~---Ll~~~L~~~ 153 (177)
+++.|+|+|+|||||||+|+.|++.+|+.+++.+++.... ....+..|....+..... .+.+.+
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~----------~~~~~~~g~~~~~~~~~~~~~~l~~~~--- 83 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPE----------NIRKMSEGIPLTDDDRWPWLAAIGERL--- 83 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHH----------HHHHHHHTCCCCHHHHHHHHHHHHHHH---
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchh----------hHHHHhcCCCCCchhhHHHHHHHHHHH---
Confidence 3568999999999999999999999999999988775321 122233454444332222 222222
Q ss_pred CCCCcceEEEeCCCCCHHHHHh
Q 030464 154 YYRGEIGFILDGLPRSRIQATI 175 (177)
Q Consensus 154 ~~~~~~G~ILDGfPrt~~QAe~ 175 (177)
. ...++|+|+......+.+.
T Consensus 84 ~--~~~~vivd~~~~~~~~~~~ 103 (202)
T 3t61_A 84 A--SREPVVVSCSALKRSYRDK 103 (202)
T ss_dssp T--SSSCCEEECCCCSHHHHHH
T ss_pred h--cCCCEEEECCCCCHHHHHH
Confidence 1 2568999988776655443
No 29
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.03 E-value=3.4e-10 Score=88.20 Aligned_cols=83 Identities=20% Similarity=0.238 Sum_probs=56.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh-CCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHH---------
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLL--------- 146 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l-gl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll--------- 146 (177)
+++.|+|+|+|||||||+++.|++.+ |++++++.+. ...+..++.+++.+..+..+.+... .++
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~-----~~~~~~g~~i~~~~~~~~~~~~~~~-~~l~~~~r~~~~ 76 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFP-----QRSTVTGKMIDDYLTRKKTYNDHIV-NLLFCANRWEFA 76 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESS-----CTTSHHHHHHHHHHTSSCCCCHHHH-HHHHHHHHHTTH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecC-----CCCCcHHHHHHHHHhcCCCCCHHHH-HHHHHHHHHHHH
Confidence 57889999999999999999999998 6888876432 1235677888888876654433321 221
Q ss_pred ---HHHHHccCCCCcceEEEeCCCCCH
Q 030464 147 ---SKRLEDGYYRGEIGFILDGLPRSR 170 (177)
Q Consensus 147 ---~~~L~~~~~~~~~G~ILDGfPrt~ 170 (177)
...+. ....+|+|+||.+.
T Consensus 77 ~~i~~~l~-----~~~~vi~Dr~~~s~ 98 (204)
T 2v54_A 77 SFIQEQLE-----QGITLIVDRYAFSG 98 (204)
T ss_dssp HHHHHHHH-----TTCEEEEESCHHHH
T ss_pred HHHHHHHH-----CCCEEEEECchhhH
Confidence 12222 23578999998753
No 30
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.02 E-value=4e-10 Score=86.45 Aligned_cols=41 Identities=12% Similarity=0.129 Sum_probs=36.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhC-----CCeeeCchhhhhcc
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVRQDL 117 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lg-----l~~Is~~dLlr~el 117 (177)
+++.|+|.|+|||||||+|+.|++.++ ++++++++++++..
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~ 47 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVA 47 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHH
Confidence 357899999999999999999999998 99999999888653
No 31
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.99 E-value=6.9e-10 Score=85.54 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=33.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIV 113 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLl 113 (177)
.+++.|+|+|+|||||||+++.|++.+|+++++.+++.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~ 40 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFK 40 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHH
Confidence 35678999999999999999999999999999986553
No 32
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.96 E-value=1.7e-09 Score=85.65 Aligned_cols=39 Identities=15% Similarity=0.108 Sum_probs=36.2
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e 116 (177)
+++|.|+|++||||||+++.|++.+|+++++.|+++++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~ 43 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVL 43 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehh
Confidence 468999999999999999999999999999999999854
No 33
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.94 E-value=1.1e-09 Score=85.32 Aligned_cols=41 Identities=20% Similarity=0.413 Sum_probs=37.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH-hCCCeeeCchhhhhc
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL-LEVPRISMSSIVRQD 116 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~-lgl~~Is~~dLlr~e 116 (177)
.++++|+|+|+|||||||+++.|++. +|++++++++++++.
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~ 49 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKEN 49 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHh
Confidence 46778999999999999999999999 899999999999874
No 34
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.94 E-value=1.5e-09 Score=88.89 Aligned_cols=91 Identities=12% Similarity=0.106 Sum_probs=52.4
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHHhCC--CeeeCchhhhhccCCC----CchHHHHHHHHHcCCcchHHHHHHHHHH
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEV--PRISMSSIVRQDLSPR----SSLHKQIANAVNRGEVVSEDIIFGLLSK 148 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl--~~Is~~dLlr~el~~~----s~lgk~i~~~l~~G~~Ipdeli~~Ll~~ 148 (177)
..++..|+|+|+|||||||+|+.|++.++. .+++ +|.++..+... ...+..+...... ....++..++..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~-~D~~r~~~~~~~~i~~~~g~~~~~~~~~---~~~~~~~~~~~~ 104 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIID-GDSFRSQHPHYLELQQEYGKDSVEYTKD---FAGKMVESLVTK 104 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEEC-GGGGGTTSTTHHHHHTTCSSTTHHHHHH---HHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEe-cHHHHHhchhHHHHHHHcCchHHHHhhH---HHHHHHHHHHHH
Confidence 356788999999999999999999999873 4444 46666543220 0011111111110 011222333333
Q ss_pred HHHccCCCCcceEEEeCCCCCHHHHH
Q 030464 149 RLEDGYYRGEIGFILDGLPRSRIQAT 174 (177)
Q Consensus 149 ~L~~~~~~~~~G~ILDGfPrt~~QAe 174 (177)
.+.. ..+|||||++++..|.+
T Consensus 105 ~~~~-----g~~vVid~~~~~~~~~~ 125 (253)
T 2p5t_B 105 LSSL-----GYNLLIEGTLRTVDVPK 125 (253)
T ss_dssp HHHT-----TCCEEEECCTTSSHHHH
T ss_pred HHhc-----CCCEEEeCCCCCHHHHH
Confidence 2222 34899999999876644
No 35
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.92 E-value=1e-09 Score=86.41 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=36.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e 116 (177)
.++..|+|+|+|||||||+++.|++.+|+++++.+++++..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~ 63 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEER 63 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHH
Confidence 45678999999999999999999999999999999988764
No 36
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.89 E-value=2.9e-09 Score=82.00 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=35.9
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhcc
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL 117 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el 117 (177)
++|+|+|+|||||||+|+.|++++|+++++.++++++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~ 41 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT 41 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHc
Confidence 469999999999999999999999999999999888654
No 37
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.88 E-value=1.5e-09 Score=83.38 Aligned_cols=38 Identities=24% Similarity=0.275 Sum_probs=35.1
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e 116 (177)
++|+|+|+|||||||+|+.|++.+|+++++.++++++.
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~ 42 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQK 42 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHH
Confidence 47999999999999999999999999999999988764
No 38
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.88 E-value=3e-09 Score=86.54 Aligned_cols=94 Identities=14% Similarity=0.018 Sum_probs=60.8
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHHhCC--CeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHH-HHHHHHHH
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEV--PRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIF-GLLSKRLE 151 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl--~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~-~Ll~~~L~ 151 (177)
+.+++.|+|.|+|||||||+++.|++.++. .++.. .....+++++.+++++..+..+.+.... -....+.+
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~------~~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~ 96 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT------REPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRRE 96 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE------CTTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee------cCCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 457889999999999999999999999874 33332 2344578899999999888753333221 11223332
Q ss_pred cc------CCCCcceEEEe----------CCCCCHHHHH
Q 030464 152 DG------YYRGEIGFILD----------GLPRSRIQAT 174 (177)
Q Consensus 152 ~~------~~~~~~G~ILD----------GfPrt~~QAe 174 (177)
.. .......+|+| |+|++..++.
T Consensus 97 ~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~ 135 (229)
T 4eaq_A 97 HLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEE 135 (229)
T ss_dssp HCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHH
T ss_pred HHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHH
Confidence 21 00124579999 9999876653
No 39
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.85 E-value=1.6e-08 Score=78.11 Aligned_cols=56 Identities=16% Similarity=0.170 Sum_probs=45.3
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh---CCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHH
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSED 140 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~l---gl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipde 140 (177)
+.|+|+|+|||||||+|+.|++.+ |++++.+.+ ...+..++.+++.+..|...+..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~------~~~~~~g~~~~~~~~~~~~~~~~ 59 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTPKA 59 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES------SCSSHHHHHHHHHHHHSCCCHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC------CCCCcHHHHHHHHHHhcCCCHHH
Confidence 368999999999999999999999 999987643 34567888899988877777653
No 40
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.85 E-value=2.4e-09 Score=81.54 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=36.1
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhcc
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL 117 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el 117 (177)
+.+|+|+|+|||||||+|+.|++++|+++++.++++++..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~ 46 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV 46 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHh
Confidence 4578999999999999999999999999999999888754
No 41
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.84 E-value=5.3e-09 Score=81.84 Aligned_cols=63 Identities=19% Similarity=0.240 Sum_probs=46.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSED 140 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipde 140 (177)
.+++.|+|+|+|||||||+|+.|++.++..++++. .+++. ...+..++.+++.+..+..++++
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~-~~~~~-~~~~~~~~~i~~~~~~~~~~~~~ 69 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAE-LLRFP-ERSTEIGKLLSSYLQKKSDVEDH 69 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE-EEESS-CTTSHHHHHHHHHHTTSSCCCHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEE-EeeCC-CCCCcHHHHHHHHHhcCCCCCHH
Confidence 35788999999999999999999999887777663 33332 22366777788888776655554
No 42
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.82 E-value=6.6e-09 Score=85.49 Aligned_cols=81 Identities=15% Similarity=0.181 Sum_probs=50.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH---hCCCee--eCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKL---LEVPRI--SMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLE 151 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~---lgl~~I--s~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~ 151 (177)
+++.|+|+|+|||||||+|+.|++. .|++++ +. |.++..+..-... ++.....+....++..+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~-D~~~~~l~~~~~~----------~e~~~~~~~~~~i~~~l~ 71 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGS-DLIRESFPVWKEK----------YEEFIKKSTYRLIDSALK 71 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECT-HHHHTTSSSCCGG----------GHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECc-hHHHHHHhhhhHH----------HHHHHHHHHHHHHHHHhh
Confidence 5678999999999999999999998 788887 65 4455444321111 111112222333444332
Q ss_pred ccCCCCcceEEEeCCCCCHHHHH
Q 030464 152 DGYYRGEIGFILDGLPRSRIQAT 174 (177)
Q Consensus 152 ~~~~~~~~G~ILDGfPrt~~QAe 174 (177)
. ..+|+||.+....+.+
T Consensus 72 -----~-~~vIiD~~~~~~~~~~ 88 (260)
T 3a4m_A 72 -----N-YWVIVDDTNYYNSMRR 88 (260)
T ss_dssp -----T-SEEEECSCCCSHHHHH
T ss_pred -----C-CEEEEeCCcccHHHHH
Confidence 2 5899999877655433
No 43
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.81 E-value=6.4e-09 Score=81.32 Aligned_cols=49 Identities=10% Similarity=0.160 Sum_probs=40.1
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHH
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIA 128 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~ 128 (177)
++|+|+|++||||||+++.|++ +|++++++++++++...........+.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~ 50 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVV 50 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHH
Confidence 5799999999999999999999 999999999999876654444333333
No 44
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.81 E-value=2.3e-08 Score=78.41 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=36.1
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCC
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPR 120 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~ 120 (177)
++|.|+|++||||||+++.|++ +|+++++.+++.+......
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~ 43 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKD 43 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSS
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCC
Confidence 5789999999999999999988 9999999999988765443
No 45
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=98.80 E-value=1.4e-08 Score=77.58 Aligned_cols=33 Identities=18% Similarity=-0.028 Sum_probs=24.9
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHHhCCCee
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~I 107 (177)
|++++.|+|+|+|||||||+|+.|++.+|.+++
T Consensus 2 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 2 PMRSPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp ---CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 356788999999999999999999999999988
No 46
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=98.79 E-value=1.1e-08 Score=81.16 Aligned_cols=53 Identities=23% Similarity=0.228 Sum_probs=42.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANA 130 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~ 130 (177)
+++.|+|+|++||||||+++.|++ +|+++++.+++++............+.+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~ 55 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADH 55 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHH
Confidence 567899999999999999999998 99999999999887665544444444333
No 47
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.79 E-value=1.6e-08 Score=84.42 Aligned_cols=52 Identities=13% Similarity=0.081 Sum_probs=42.7
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHH
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQI 127 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i 127 (177)
+.+++.|+|+|+|||||||+|+.|+ .+|+++|+++++.++...........+
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i 123 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPV 123 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHH
Confidence 3567889999999999999999999 689999999999887766555444333
No 48
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.78 E-value=6.4e-09 Score=87.35 Aligned_cols=89 Identities=11% Similarity=0.099 Sum_probs=55.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh--CCCeeeCchhhhhccCCCCchHHHHHHHHHcC----CcchHHHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL--EVPRISMSSIVRQDLSPRSSLHKQIANAVNRG----EVVSEDIIFGLLSKR 149 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l--gl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G----~~Ipdeli~~Ll~~~ 149 (177)
.++..|+|.|+|||||||+|+.|++.+ ++.+||. |.++........ .+......- ......+...++.+.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~-D~~R~~~~~~~~---~~~~~~~~a~~~~~~~~~~~~~~~v~~~ 106 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN-DTFKQQHPNFDE---LVKLYEKDVVKHVTPYSNRMTEAIISRL 106 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT-HHHHTTSTTHHH---HHHHHGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec-hHhHHhchhhHH---HHHHccchhhhhhhHHHHHHHHHHHHHH
Confidence 467889999999999999999999998 7888886 556654332111 111110000 011223344455554
Q ss_pred HHccCCCCcceEEEeCCCCCHHHH
Q 030464 150 LEDGYYRGEIGFILDGLPRSRIQA 173 (177)
Q Consensus 150 L~~~~~~~~~G~ILDGfPrt~~QA 173 (177)
+.. ...+|||+...+..|.
T Consensus 107 l~~-----g~~vIld~~~~~~~~~ 125 (287)
T 1gvn_B 107 SDQ-----GYNLVIEGTGRTTDVP 125 (287)
T ss_dssp HHH-----TCCEEECCCCCCSHHH
T ss_pred Hhc-----CCeEEEECCCCCHHHH
Confidence 443 3579999999886643
No 49
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.75 E-value=8.1e-09 Score=80.34 Aligned_cols=29 Identities=31% Similarity=0.412 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~ 105 (177)
+++.|+|.|+|||||||+|+.|++.++..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 56789999999999999999999999874
No 50
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.71 E-value=7.9e-09 Score=79.47 Aligned_cols=40 Identities=18% Similarity=0.059 Sum_probs=36.3
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhcc
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL 117 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el 117 (177)
+.+|+|+|+|||||||+|+.|++.+|+++++.++++++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~ 44 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRT 44 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHc
Confidence 5679999999999999999999999999999998877643
No 51
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.68 E-value=1.5e-08 Score=76.36 Aligned_cols=37 Identities=30% Similarity=0.152 Sum_probs=33.6
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhh
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQ 115 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~ 115 (177)
+.|+|+|+|||||||+|+.|++.+|+++++.+.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~ 38 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELA 38 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccc
Confidence 4789999999999999999999999999999876654
No 52
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.68 E-value=1.2e-08 Score=77.14 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=35.7
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhcc
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL 117 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el 117 (177)
++|+|+|+|||||||+|+.|++.+|+++++.+++.+...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~ 39 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKRE 39 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHc
Confidence 479999999999999999999999999999999887653
No 53
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.67 E-value=1.1e-08 Score=78.62 Aligned_cols=41 Identities=15% Similarity=0.204 Sum_probs=37.2
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e 116 (177)
.++..|+|+|+|||||||+++.|++.+|+.++++++++++.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~ 49 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE 49 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhc
Confidence 35677999999999999999999999999999999988764
No 54
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.67 E-value=9.7e-09 Score=77.86 Aligned_cols=38 Identities=8% Similarity=0.098 Sum_probs=35.2
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e 116 (177)
+.|+|+|+|||||||+|+.|++.+|+++++.+++++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~ 40 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHT 40 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHH
Confidence 57999999999999999999999999999999888765
No 55
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.63 E-value=9.2e-08 Score=78.36 Aligned_cols=40 Identities=18% Similarity=0.104 Sum_probs=36.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQ 115 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~ 115 (177)
.++.+|.|+|++||||||+++.|++++|+.+++.|+++|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~ 64 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRV 64 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehH
Confidence 3567899999999999999999999999999999999855
No 56
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.63 E-value=3.1e-08 Score=82.14 Aligned_cols=86 Identities=16% Similarity=0.137 Sum_probs=57.5
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHH-cCCcchHHHHHHHHHHHHHccCCC
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYYR 156 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~-~G~~Ipdeli~~Ll~~~L~~~~~~ 156 (177)
+.+|+|+|++||||||+++.|++.+|+.+++.+++++.... +..+ ...+. .|+....++..+++.+.+...
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~-g~~i----~~i~~~~ge~~fr~~e~~~l~~l~~~~--- 119 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMK-GTSV----AEIFEHFGESVFREKETEALKKLSLMY--- 119 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHST-TSCH----HHHHHHHCHHHHHHHHHHHHHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhc-CccH----HHHHHHhCcHHHHHHHHHHHHHHHhhc---
Confidence 67899999999999999999999999999999999887652 2222 22222 365555555555665544331
Q ss_pred CcceEEEe--CCCCCHHH
Q 030464 157 GEIGFILD--GLPRSRIQ 172 (177)
Q Consensus 157 ~~~G~ILD--GfPrt~~Q 172 (177)
..++|.+ |.+.....
T Consensus 120 -~~~Via~GgG~v~~~~~ 136 (250)
T 3nwj_A 120 -HQVVVSTGGGAVIRPIN 136 (250)
T ss_dssp -SSEEEECCGGGGGSHHH
T ss_pred -CCcEEecCCCeecCHHH
Confidence 1345544 45554443
No 57
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.63 E-value=1.9e-08 Score=77.91 Aligned_cols=43 Identities=14% Similarity=0.247 Sum_probs=37.4
Q ss_pred ccCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhcc
Q 030464 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL 117 (177)
Q Consensus 74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el 117 (177)
-+.++++|+|+|++||||||+++.|++. |+++++.++++++..
T Consensus 4 ~~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~ 46 (203)
T 1uf9_A 4 EAKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAR 46 (203)
T ss_dssp --CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc
Confidence 3457789999999999999999999998 999999999887654
No 58
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.59 E-value=1.2e-07 Score=83.40 Aligned_cols=37 Identities=11% Similarity=0.056 Sum_probs=33.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI 112 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dL 112 (177)
.++..|+|+|+|||||||+|+.|++.+++.+|+.+++
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~ 292 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTL 292 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchH
Confidence 4667899999999999999999999999999998775
No 59
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.56 E-value=3.1e-08 Score=75.21 Aligned_cols=39 Identities=13% Similarity=0.131 Sum_probs=35.1
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e 116 (177)
+..|+|+|+|||||||+++.|++.++.++++.++++++.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~ 42 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKR 42 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHH
Confidence 457999999999999999999999999999988877654
No 60
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=98.53 E-value=9.8e-08 Score=78.22 Aligned_cols=92 Identities=14% Similarity=0.075 Sum_probs=55.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc---hhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHc
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS---SIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLED 152 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~---dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~ 152 (177)
.+++.|+|.|++||||||+++.|++.++-.+++.+ .+.++. ..+++|+.+++.+..+...|.....-....|.+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep--~~t~~g~~ir~~l~~~~~~~~~~~llf~a~R~~~ 100 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREP--GGTRLGETLREILLNQPMDLETEALLMFAGRREH 100 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESS--SSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCC--CCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 46788999999999999999999998844322222 123332 4678999999999988766654322222222221
Q ss_pred c------CCCCcceEEEeCCCCC
Q 030464 153 G------YYRGEIGFILDGLPRS 169 (177)
Q Consensus 153 ~------~~~~~~G~ILDGfPrt 169 (177)
. .......+|.|.|.-+
T Consensus 101 ~~~~i~p~l~~g~~VI~DRy~~S 123 (227)
T 3v9p_A 101 LALVIEPALARGDWVVSDRFTDA 123 (227)
T ss_dssp HHHTHHHHHHTTCEEEEECCHHH
T ss_pred HHHHHHHHHHcCCEEEEeccHhH
Confidence 0 0001346888987544
No 61
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=98.51 E-value=1.5e-07 Score=75.14 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=35.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhcc
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL 117 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el 117 (177)
+.+.|.|.|++||||||+++.||+++|+++++ +++++...
T Consensus 5 ~~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a 44 (201)
T 3fdi_A 5 KQIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVA 44 (201)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTT
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHH
Confidence 45689999999999999999999999999999 99987643
No 62
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.48 E-value=5.1e-07 Score=70.79 Aligned_cols=38 Identities=11% Similarity=0.045 Sum_probs=33.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIV 113 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLl 113 (177)
.++..|+|+|++||||||+++.|++.+|..+++.+++.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~ 64 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFH 64 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccc
Confidence 35678999999999999999999999999999987764
No 63
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=98.48 E-value=7.6e-08 Score=76.65 Aligned_cols=41 Identities=15% Similarity=0.138 Sum_probs=36.9
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccC
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS 118 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~ 118 (177)
..+|.|+|++||||||+++.|++.+|+++|++|+++++...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~ 52 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLE 52 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHH
Confidence 35789999999999999999999999999999999887643
No 64
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=98.48 E-value=9.9e-08 Score=74.14 Aligned_cols=37 Identities=22% Similarity=0.212 Sum_probs=34.8
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e 116 (177)
.|.|+|++||||||+++.|++.+|+++++.+++.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~ 40 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAA 40 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhh
Confidence 7899999999999999999999999999999988764
No 65
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.47 E-value=1e-07 Score=72.65 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=31.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeee--Cchhhh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS--MSSIVR 114 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is--~~dLlr 114 (177)
.+..|+|+|+|||||||+++.|++.++..++. +++++.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~ 41 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIE 41 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhh
Confidence 35679999999999999999999999877664 555443
No 66
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.46 E-value=8.3e-08 Score=79.10 Aligned_cols=42 Identities=14% Similarity=0.106 Sum_probs=36.6
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e 116 (177)
+.+++.|+|+|||||||||+++.|++.+|+.+++.+++++..
T Consensus 6 ~~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~ 47 (233)
T 3r20_A 6 VSGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIA 47 (233)
T ss_dssp ---CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHH
Confidence 346789999999999999999999999999999999998764
No 67
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=98.45 E-value=8e-08 Score=75.80 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=36.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e 116 (177)
+++.|+|+|++||||||+++.|++.+|+++++.+++++..
T Consensus 2 ~~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~ 41 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRAL 41 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHH
Confidence 4678999999999999999999999999999999998853
No 68
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=98.45 E-value=1.1e-07 Score=77.54 Aligned_cols=40 Identities=18% Similarity=0.127 Sum_probs=35.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCC----------eeeCchhhhh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVP----------RISMSSIVRQ 115 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~----------~Is~~dLlr~ 115 (177)
.++++|.|+|+|||||||+|+.|++.+|++ +++++++++.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~ 69 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRV 69 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccc
Confidence 356789999999999999999999999988 7999998874
No 69
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.42 E-value=1.9e-07 Score=71.14 Aligned_cols=37 Identities=11% Similarity=0.112 Sum_probs=33.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIV 113 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLl 113 (177)
++..|+|+|+|||||||+++.|++.+|..+++.+++.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~ 43 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLH 43 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCcccc
Confidence 4678999999999999999999999999999987764
No 70
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=98.41 E-value=2.5e-07 Score=75.48 Aligned_cols=40 Identities=8% Similarity=0.065 Sum_probs=35.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhcc
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL 117 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el 117 (177)
+++.|.|.|++||||||+++.||+++|+++++ +++++...
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a 52 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYD-DDILKLAS 52 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHH
Confidence 45789999999999999999999999999999 78877643
No 71
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=98.40 E-value=1.7e-07 Score=75.52 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=37.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e 116 (177)
.++.+|.|+|++||||||+++.|++.+|+++++.+++++..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~ 54 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAA 54 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcc
Confidence 46678999999999999999999999999999999999863
No 72
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.40 E-value=2.3e-07 Score=76.22 Aligned_cols=35 Identities=11% Similarity=0.135 Sum_probs=32.4
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhh
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIV 113 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLl 113 (177)
..|+|+|||||||||+|+.||+.++..+++++++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~ 36 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQ 36 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHh
Confidence 46899999999999999999999999999998864
No 73
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.37 E-value=5.2e-07 Score=70.97 Aligned_cols=40 Identities=18% Similarity=0.106 Sum_probs=31.3
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCC-CeeeCchhhhh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEV-PRISMSSIVRQ 115 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl-~~Is~~dLlr~ 115 (177)
.++..|+|+|||||||||+++.|++.++- .++++.+..|+
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~ 50 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRN 50 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCC
Confidence 46678999999999999999999998853 45555555444
No 74
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=98.34 E-value=1.4e-07 Score=85.56 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=32.4
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCC-----eeeCchhhhhc
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVP-----RISMSSIVRQD 116 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~-----~Is~~dLlr~e 116 (177)
..+..|+|+|.|||||||+|++|++.++.. +|+.|++.+..
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~ 78 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREA 78 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHh
Confidence 356789999999999999999999998544 36777755543
No 75
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.29 E-value=2e-06 Score=67.90 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=32.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC------CCeeeCchhhhhcc
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE------VPRISMSSIVRQDL 117 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg------l~~Is~~dLlr~el 117 (177)
.++..|+|+|+|||||||+++.|++.++ +.+++ ++.++..+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~-~d~~r~~l 69 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD-GDNIRFGL 69 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC-HHHHTTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC-ChHHhhhh
Confidence 4678899999999999999999999876 66676 35556544
No 76
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=98.26 E-value=2.1e-06 Score=69.22 Aligned_cols=54 Identities=17% Similarity=0.190 Sum_probs=42.6
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC---CCeeeCchhhhhccCCCCchHHHHHHHHHcCC
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE---VPRISMSSIVRQDLSPRSSLHKQIANAVNRGE 135 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg---l~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~ 135 (177)
++++.|+|.|++||||||+++.|++.++ +.++.+ +. ...+++|+.+++++..+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~----~~--p~~~~~g~~i~~~l~~~~ 60 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT----RE--PGGTPLAERIRELLLAPS 60 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE----ES--SCSSHHHHHHHHHHHSCC
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc----cC--CCCCHHHHHHHHHHhcCC
Confidence 4688999999999999999999999884 444433 32 246789999999998874
No 77
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.23 E-value=5e-07 Score=70.84 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=35.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh-CCCeeeCchhhhh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQ 115 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l-gl~~Is~~dLlr~ 115 (177)
.++..|.|+|+|||||||+++.|++.+ ++.+++.++++..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~ 59 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKP 59 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccC
Confidence 456789999999999999999999998 8999999988764
No 78
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=98.23 E-value=2.2e-06 Score=70.49 Aligned_cols=56 Identities=14% Similarity=0.114 Sum_probs=44.3
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHc
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNR 133 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~ 133 (177)
++++.|+|.|++||||||+++.|++.++..+++...+.++. ..+++|+.+++++..
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep--~~t~~g~~ir~~l~~ 80 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREP--GGTLLAEKLRALVKE 80 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESS--CSSHHHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCC--CCCHHHHHHHHHHhh
Confidence 46788999999999999999999999866666644455543 468899999999863
No 79
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=98.21 E-value=1.1e-06 Score=71.52 Aligned_cols=52 Identities=12% Similarity=0.132 Sum_probs=43.7
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHH
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV 131 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l 131 (177)
--|.++|.+||||||+++.|++ +|+++|+.+.+.++.+.......+.+.+..
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~f 61 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTF 61 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHh
Confidence 4588999999999999999988 999999999999988877666555555443
No 80
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.20 E-value=8.3e-07 Score=68.39 Aligned_cols=30 Identities=23% Similarity=0.215 Sum_probs=27.2
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeee
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRIS 108 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is 108 (177)
+.|+|+|+|||||||+++.|++.++..++.
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred CEEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 468999999999999999999999987764
No 81
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.11 E-value=2.2e-06 Score=65.66 Aligned_cols=41 Identities=24% Similarity=0.322 Sum_probs=33.3
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh---CCCeeeCc-hhhhhc
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMS-SIVRQD 116 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l---gl~~Is~~-dLlr~e 116 (177)
.++..|+|+|++||||||+++.|++.+ |++++.++ +.++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~ 47 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQG 47 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHH
Confidence 357789999999999999999999988 98888664 455543
No 82
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.08 E-value=2.3e-06 Score=65.70 Aligned_cols=39 Identities=26% Similarity=0.308 Sum_probs=31.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCC--eeeCchhhh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVP--RISMSSIVR 114 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~--~Is~~dLlr 114 (177)
.++..|+|+|+|||||||+++.|++.++.. +++.+++..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~ 47 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWG 47 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhh
Confidence 466789999999999999999999987555 666666543
No 83
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.05 E-value=2.2e-06 Score=73.86 Aligned_cols=36 Identities=25% Similarity=0.191 Sum_probs=32.7
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhh
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIV 113 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLl 113 (177)
+..|+|+||+||||||+|+.||+.++..+|+++++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 357999999999999999999999999999998753
No 84
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.03 E-value=1.6e-06 Score=72.95 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=31.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhC-----CCeeeCchhhh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVR 114 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lg-----l~~Is~~dLlr 114 (177)
+++.|.|.|++||||||+|+.|++.+| +.+|+++++.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 566799999999999999999999887 78999999876
No 85
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=98.02 E-value=1.1e-05 Score=65.16 Aligned_cols=55 Identities=16% Similarity=0.122 Sum_probs=40.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHc
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNR 133 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~ 133 (177)
+++.|+|.|++||||||+++.|++.+.-..++...+.++ ...+++|+.+++.+..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~re--p~~t~~g~~ir~~l~~ 56 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTRE--PGGTQLAEKLRSLLLD 56 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES--SCSSHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeC--CCCCHHHHHHHHHHhc
Confidence 567899999999999999999999874333311122232 2467899999999873
No 86
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=98.01 E-value=2.8e-05 Score=62.19 Aligned_cols=56 Identities=14% Similarity=0.086 Sum_probs=41.9
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh--CCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHH
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLL--EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSED 140 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~l--gl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipde 140 (177)
.=|+|-|+.||||||+++.|++.+ |+.++.+. -...+++++.+++.+..+..++..
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~------eP~~t~~g~~ir~~l~~~~~~~~~ 60 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR------EPGGVPTGEEIRKIVLEGNDMDIR 60 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEE------SSTTCHHHHHHHHHHHSSCCCCHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEee------CCCCChHHHHHHHHHhcccCCCHH
Confidence 357888999999999999999988 44443321 124578899999998888766543
No 87
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.00 E-value=4.5e-06 Score=65.35 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=30.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh---CCC--eeeCchh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---EVP--RISMSSI 112 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l---gl~--~Is~~dL 112 (177)
.++..|+|+|++||||||+++.|++.+ |.. +++.+++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 467789999999999999999999998 665 7775443
No 88
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=97.98 E-value=1.1e-05 Score=65.56 Aligned_cols=54 Identities=17% Similarity=0.189 Sum_probs=43.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGE 135 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~ 135 (177)
+++.|+|.|++||||||+++.|++.++.. ..+++.. ...+++|+.+++++....
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~----~~~~~ep-~~~t~~g~~ir~~l~~~~ 57 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPN----CKLLKFP-ERSTRIGGLINEYLTDDS 57 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSS----EEEEESS-CTTSHHHHHHHHHHHCTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccc----ceEEEec-CCCChHHHHHHHHHHhcc
Confidence 67889999999999999999999999873 2334432 346889999999988754
No 89
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.96 E-value=3.2e-06 Score=65.08 Aligned_cols=42 Identities=26% Similarity=0.377 Sum_probs=31.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC-----CCeeeCchhhhhccC
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVRQDLS 118 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg-----l~~Is~~dLlr~el~ 118 (177)
.++..|+|+|+|||||||+++.|++.++ +.+++ +|.++..+.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~-~d~~~~~~~ 57 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD-GDWARTTVS 57 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE-HHHHHTTTT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee-HHHHHHHHh
Confidence 3678899999999999999999999874 23455 355555443
No 90
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.94 E-value=3.6e-06 Score=73.04 Aligned_cols=36 Identities=11% Similarity=0.142 Sum_probs=33.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI 112 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dL 112 (177)
++..|+|+||+|||||+++..||++++..+||.+.+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 456899999999999999999999999999999876
No 91
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.93 E-value=6.3e-06 Score=68.84 Aligned_cols=35 Identities=17% Similarity=0.212 Sum_probs=29.6
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~ 110 (177)
..+..++|.||||+|||++|+.||+.+|.+++.+.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~ 68 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMS 68 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 45567888899999999999999999998766553
No 92
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.90 E-value=6.2e-06 Score=71.52 Aligned_cols=34 Identities=18% Similarity=0.131 Sum_probs=32.1
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchh
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI 112 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dL 112 (177)
..|+|+||+||||||+|..|++.++..+|++|++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 5789999999999999999999999999999987
No 93
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.87 E-value=6e-06 Score=64.55 Aligned_cols=39 Identities=18% Similarity=0.257 Sum_probs=33.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC--CCeeeCchhhh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE--VPRISMSSIVR 114 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg--l~~Is~~dLlr 114 (177)
.++..|.|+|++||||||+++.|+..++ +.+++.+..++
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~ 44 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYK 44 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCcccc
Confidence 3567899999999999999999999988 88888877654
No 94
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.87 E-value=4.4e-05 Score=58.31 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=31.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh----C--CCeeeCchhhhh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL----E--VPRISMSSIVRQ 115 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l----g--l~~Is~~dLlr~ 115 (177)
++..++|+||||+||||+++.++..+ | +.+++..+++..
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~ 81 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR 81 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 46779999999999999999998765 4 456777666654
No 95
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.87 E-value=2.4e-05 Score=63.88 Aligned_cols=66 Identities=12% Similarity=0.189 Sum_probs=40.0
Q ss_pred ccccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHhCC-CeeeCchhhhhccCCCCchHHHHHHHHHc
Q 030464 65 VTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEV-PRISMSSIVRQDLSPRSSLHKQIANAVNR 133 (177)
Q Consensus 65 ~~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl-~~Is~~dLlr~el~~~s~lgk~i~~~l~~ 133 (177)
+..+++.... .+++.|+|.|++||||||+++.|++.++. ..+++--+.+. ...+++++.+++++..
T Consensus 9 ~~~~~~~~~~-~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~tre--P~~t~~g~~ir~~l~~ 75 (223)
T 3ld9_A 9 MGTLEAQTQG-PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTRE--PGGTLLNESVRNLLFK 75 (223)
T ss_dssp -----------CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEES--SCSSHHHHHHHHHHHT
T ss_pred cccccccccC-CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeC--CCCChHHHHHHHHHhC
Confidence 4444444443 47889999999999999999999998765 33322111122 2356788888888765
No 96
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.87 E-value=8e-06 Score=70.47 Aligned_cols=36 Identities=28% Similarity=0.220 Sum_probs=33.1
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI 112 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dL 112 (177)
+++.|+|+||+|||||+++..||+.++..+||.+.+
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 456789999999999999999999999999999876
No 97
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.86 E-value=2.9e-05 Score=68.95 Aligned_cols=31 Identities=16% Similarity=0.206 Sum_probs=26.2
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCe
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPR 106 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~ 106 (177)
.++..|+|+|.|||||||++++|++.++...
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 4668899999999999999999999876443
No 98
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=97.81 E-value=3.7e-05 Score=70.14 Aligned_cols=42 Identities=31% Similarity=0.453 Sum_probs=33.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCC-----CeeeCchhhhhccCC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV-----PRISMSSIVRQDLSP 119 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl-----~~Is~~dLlr~el~~ 119 (177)
.+..|+|+|+|||||||+|+.|++.++. .+++ +|.++..+..
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld-~D~ir~~l~~ 417 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLD-GDVVRTHLSR 417 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC-HHHHHHHTCT
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEEC-chHhhhhhcc
Confidence 3578999999999999999999998763 5566 4667766543
No 99
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=97.81 E-value=1.7e-05 Score=73.80 Aligned_cols=43 Identities=26% Similarity=0.333 Sum_probs=36.6
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh---CCCeeeCc-hhhhhccC
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMS-SIVRQDLS 118 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l---gl~~Is~~-dLlr~el~ 118 (177)
.++..|+|+|.|||||||+|+.|++.+ |++++.++ +.+|..+.
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~ 96 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLN 96 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTT
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccC
Confidence 367889999999999999999999999 99888775 67776554
No 100
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=97.81 E-value=1e-05 Score=66.77 Aligned_cols=39 Identities=13% Similarity=0.189 Sum_probs=34.9
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhcc
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL 117 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el 117 (177)
+.|.|+|++||||||+|+.|++.+|++++++++-+++++
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~~ 40 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDAL 40 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHHHH
Confidence 578999999999999999999999999999998776643
No 101
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.81 E-value=1.3e-05 Score=69.06 Aligned_cols=36 Identities=28% Similarity=0.233 Sum_probs=32.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI 112 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dL 112 (177)
.+..|+|+||+|||||++|..||+.++..+||.+.+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 456789999999999999999999999999998863
No 102
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.78 E-value=1.3e-05 Score=61.69 Aligned_cols=36 Identities=17% Similarity=0.135 Sum_probs=29.3
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCC-CeeeCchhhh
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEV-PRISMSSIVR 114 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl-~~Is~~dLlr 114 (177)
..|+|+|++||||||+++.|++.++. .+++.+++.+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~ 39 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINH 39 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhh
Confidence 46889999999999999999987765 6777665543
No 103
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.77 E-value=1.8e-05 Score=63.36 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=28.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~ 109 (177)
.+..|+|.||||+|||++|+.+++.++.+++.+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~ 70 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFLAM 70 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 345689999999999999999999998876654
No 104
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.76 E-value=8.3e-05 Score=62.43 Aligned_cols=34 Identities=18% Similarity=0.145 Sum_probs=29.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~ 110 (177)
.+..|+|.||||+|||++|+.+++..+.+++.+.
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~ 83 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVS 83 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEc
Confidence 3567999999999999999999999998876654
No 105
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.75 E-value=2e-05 Score=63.60 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=27.5
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~ 109 (177)
+..|+|+||||+||||+|+.|+..++.+++.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i 76 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 76 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence 34599999999999999999999998776554
No 106
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.73 E-value=2.2e-05 Score=63.38 Aligned_cols=39 Identities=15% Similarity=0.049 Sum_probs=27.5
Q ss_pred ccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464 67 LPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (177)
Q Consensus 67 ~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~ 105 (177)
.++.......++..|.|+||.||||||+++.|+..+|..
T Consensus 14 ~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 14 GTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp ---------CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred eecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 344445555678889999999999999999999988865
No 107
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.70 E-value=2e-05 Score=70.26 Aligned_cols=38 Identities=13% Similarity=0.174 Sum_probs=31.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc--hhhh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVR 114 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~--dLlr 114 (177)
.+..|++.||||+|||.+|+++|...|++++.+. +++.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~ 253 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQ 253 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCS
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhh
Confidence 4567999999999999999999999998866654 4443
No 108
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.70 E-value=1.9e-05 Score=61.01 Aligned_cols=26 Identities=12% Similarity=0.100 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++..|+|+|++||||||+++.|++.+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 56789999999999999999999876
No 109
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.69 E-value=1.5e-05 Score=65.58 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.+..++|.||||+|||++|+.+++.+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45579999999999999999999987
No 110
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.68 E-value=2.2e-05 Score=60.63 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg 103 (177)
.++..|.|+||+||||||+++.|+..+.
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3566899999999999999999998764
No 111
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.67 E-value=2.6e-05 Score=63.48 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=28.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~ 109 (177)
.+..++|.||||+|||++|+.+++.++.+++.+
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v 82 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETNATFIRV 82 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 455699999999999999999999998876654
No 112
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.67 E-value=2.7e-05 Score=61.26 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=31.5
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHHhC-----CCeeeCchh
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSI 112 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lg-----l~~Is~~dL 112 (177)
..++..|.|+||+||||||+++.|+..+. ..+|++++.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 35678899999999999999999999875 567777653
No 113
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.67 E-value=2.5e-05 Score=69.52 Aligned_cols=34 Identities=12% Similarity=0.147 Sum_probs=29.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~ 110 (177)
.+.-|++.||||+|||.+|+++|..+|++++.+.
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~ 238 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVN 238 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 3456999999999999999999999998877664
No 114
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.66 E-value=2.7e-05 Score=63.88 Aligned_cols=37 Identities=16% Similarity=0.208 Sum_probs=29.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCee--eCchhh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRI--SMSSIV 113 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~I--s~~dLl 113 (177)
.+..++|.||||+|||++|+.+++.++.+++ +..++.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 91 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLT 91 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTS
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHh
Confidence 3567999999999999999999999987654 444443
No 115
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.66 E-value=2.6e-05 Score=69.68 Aligned_cols=34 Identities=15% Similarity=0.120 Sum_probs=29.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~ 110 (177)
.+.-|++.||||+|||.+|+++|..+|++++.+.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~ 247 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSP 247 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 4567999999999999999999999998876653
No 116
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=97.65 E-value=0.0002 Score=56.64 Aligned_cols=55 Identities=16% Similarity=0.164 Sum_probs=41.1
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh---CCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHH
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSED 140 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~l---gl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipde 140 (177)
-|+|-|+.||||||+++.|++.+ |+.++.+.+ ...+..++.+++.+..+..-|..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tre------P~~t~~~~~ir~~l~~~~~~~~~ 59 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTPKA 59 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEC------CCCCcHHHHHHHHhhcccCChHH
Confidence 47889999999999999999876 666655431 24567788888887776655543
No 117
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.65 E-value=3.4e-05 Score=62.80 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=29.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~ 109 (177)
.+..++|.||||+|||++|+.+++..+.+++.+
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i 95 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI 95 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 456799999999999999999999999887655
No 118
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=97.65 E-value=2.9e-05 Score=62.79 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=34.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhC---CCeeeCchhhhh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE---VPRISMSSIVRQ 115 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lg---l~~Is~~dLlr~ 115 (177)
.++.|+|+|.|||||+|+|+.+.+.+| ++.++++|.++.
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~ 51 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKE 51 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHH
Confidence 456888999999999999999988784 778999999985
No 119
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.64 E-value=2.4e-05 Score=69.37 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=29.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~ 110 (177)
.+.-|++.||||+|||.+|+++|...+++++++.
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~ 214 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVS 214 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEE
Confidence 4567999999999999999999999999877664
No 120
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.64 E-value=3e-05 Score=66.04 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=29.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~ 110 (177)
.+..|+|.||||+|||++|+.||+.++.+++.++
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~ 83 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMAD 83 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEec
Confidence 4557999999999999999999999998877664
No 121
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.64 E-value=3.2e-05 Score=64.48 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=31.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc--hhhh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVR 114 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~--dLlr 114 (177)
.+..|+|.||||+|||++|+.|++.++.+++.+. +++.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 87 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh
Confidence 4567999999999999999999999988877654 4544
No 122
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.61 E-value=3.5e-05 Score=62.81 Aligned_cols=33 Identities=27% Similarity=0.294 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~ 109 (177)
.+..++|.||||+|||++|+.+++.++.+++.+
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i 81 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKV 81 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 456799999999999999999999998776544
No 123
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.60 E-value=8.8e-06 Score=63.35 Aligned_cols=28 Identities=25% Similarity=0.140 Sum_probs=24.2
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCee
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~I 107 (177)
.|+|.|++||||||+++.|++.++...+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~ 29 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGR 29 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCC
Confidence 6899999999999999999999864433
No 124
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=97.60 E-value=1.4e-05 Score=65.12 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=28.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh-CCCeee
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL-EVPRIS 108 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l-gl~~Is 108 (177)
.+++.|+|.|++||||||+++.|++.+ ++.++.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~ 55 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVP 55 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEEC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcCCCEEEe
Confidence 467899999999999999999999998 665553
No 125
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.59 E-value=4.6e-05 Score=68.22 Aligned_cols=35 Identities=26% Similarity=0.290 Sum_probs=31.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCch
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~d 111 (177)
.+..|+|+||||+|||++|+.||+.++.+++.++.
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~ 83 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecc
Confidence 45679999999999999999999999999887763
No 126
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.58 E-value=4.1e-05 Score=63.49 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=26.3
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (177)
Q Consensus 81 IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~ 110 (177)
++|+||||+||||+++.|+..++...+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~~i~i~ 76 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLNFISVK 76 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCCEEEEE
Confidence 999999999999999999999887655543
No 127
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.57 E-value=4.2e-05 Score=58.96 Aligned_cols=28 Identities=7% Similarity=0.038 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg 103 (177)
.++..|+|+||+||||||+++.|++.+.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4566899999999999999999998753
No 128
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.57 E-value=5.8e-05 Score=56.19 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.+..++|.|+||+|||++++.+++.+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999999986
No 129
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.56 E-value=4.2e-05 Score=60.39 Aligned_cols=27 Identities=26% Similarity=0.219 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lg 103 (177)
++..|+|+||+||||||+++.|++.+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 566789999999999999999999874
No 130
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.54 E-value=3.9e-05 Score=69.16 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=29.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~ 110 (177)
.+.-|++.||||+|||.+|+.||...+++++.+.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs 275 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVI 275 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEE
Confidence 5567999999999999999999999998876654
No 131
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=97.54 E-value=8e-05 Score=68.34 Aligned_cols=41 Identities=24% Similarity=0.281 Sum_probs=32.1
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhC----CC--eeeCchhhhhccC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE----VP--RISMSSIVRQDLS 118 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lg----l~--~Is~~dLlr~el~ 118 (177)
+++.|+|+|+|||||||+|+.|++.++ .+ +++ +|.++..+.
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD-~D~ir~~l~ 441 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLL-GDTVRHELS 441 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEE-HHHHHHHTC
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEEC-cHHHHHHhc
Confidence 457899999999999999999999976 43 444 456666554
No 132
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.54 E-value=4.9e-05 Score=61.00 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh-CC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL-EV 104 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l-gl 104 (177)
+++.|+|.|++||||||+++.|++.+ ++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~~ 29 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEW 29 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCTTS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 46789999999999999999999998 44
No 133
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.54 E-value=4.6e-05 Score=67.66 Aligned_cols=33 Identities=15% Similarity=0.080 Sum_probs=30.8
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCch
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~d 111 (177)
+.|+|+||+||||||+|..|++.++..+||++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 468899999999999999999999999999887
No 134
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.53 E-value=4.8e-05 Score=56.84 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.+..++|.|+||+|||++++.+++.+
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999999987
No 135
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.53 E-value=5.4e-05 Score=68.82 Aligned_cols=28 Identities=11% Similarity=0.024 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl 104 (177)
++.+|+|+|.+||||||+++.||++++.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 5578999999999999999999999986
No 136
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.52 E-value=5.3e-05 Score=67.80 Aligned_cols=39 Identities=10% Similarity=0.215 Sum_probs=31.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc--hhhhh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVRQ 115 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~--dLlr~ 115 (177)
.+.-|++.||||+|||.+|+++|...+++++.+. +++..
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk 255 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQK 255 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCS
T ss_pred CCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhc
Confidence 4567999999999999999999999998866654 44443
No 137
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.52 E-value=5.3e-05 Score=64.68 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=29.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~ 110 (177)
.+..|+|.||||+|||++|+.|++.++.+++.++
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~ 104 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISD 104 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEec
Confidence 3457999999999999999999999988776653
No 138
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.51 E-value=2.6e-05 Score=63.01 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=27.2
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~ 110 (177)
..++|.||||+|||++|+.|++.++.+++.+.
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~~~~~~~v~ 76 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMG 76 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCC
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCEEEec
Confidence 34889999999999999999999987766543
No 139
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.51 E-value=6.8e-05 Score=60.28 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=26.4
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (177)
Q Consensus 81 IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~ 110 (177)
++|+||||+||||+++.|+...+...+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~ 81 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARVPFITAS 81 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEee
Confidence 999999999999999999999877666554
No 140
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.51 E-value=5.2e-05 Score=59.08 Aligned_cols=38 Identities=5% Similarity=-0.087 Sum_probs=29.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhC-----CCeeeCchhhh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVR 114 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lg-----l~~Is~~dLlr 114 (177)
.+..++|.||||+|||++++.+++.++ +.+++..++..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~ 93 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHAS 93 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 456799999999999999999998764 35666666543
No 141
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.49 E-value=0.00031 Score=56.22 Aligned_cols=28 Identities=11% Similarity=0.068 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg 103 (177)
.++..|+|+||+||||||+++.|.+.+.
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3667789999999999999999998864
No 142
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.45 E-value=7.4e-05 Score=63.16 Aligned_cols=39 Identities=21% Similarity=0.176 Sum_probs=30.1
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh-CCCe--eeCchhhhh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL-EVPR--ISMSSIVRQ 115 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l-gl~~--Is~~dLlr~ 115 (177)
.+..|+|.||||+|||++|+.+|+.+ +.++ ++..+++..
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~ 85 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 85 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCS
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhh
Confidence 34678999999999999999999988 6554 455455443
No 143
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.45 E-value=6.6e-05 Score=64.28 Aligned_cols=37 Identities=19% Similarity=0.200 Sum_probs=30.2
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc--hhhh
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVR 114 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~--dLlr 114 (177)
+..|+|.||||+|||++|+.+++.++.+++.+. +++.
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~ 122 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 122 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHS
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhh
Confidence 456899999999999999999999998766553 4443
No 144
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.45 E-value=8.3e-05 Score=62.47 Aligned_cols=38 Identities=26% Similarity=0.257 Sum_probs=31.6
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC-------CCeeeCchhh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-------VPRISMSSIV 113 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg-------l~~Is~~dLl 113 (177)
.++..|.|+|++||||||+++.|+..++ +.++++++..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 5677899999999999999999999876 5667777643
No 145
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.44 E-value=0.00018 Score=68.65 Aligned_cols=34 Identities=12% Similarity=0.059 Sum_probs=30.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~ 110 (177)
.+.-|+|.||||+|||++|+.+|+.+|.+++.++
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~ 270 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEE
Confidence 4567999999999999999999999999877664
No 146
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.43 E-value=0.00028 Score=58.80 Aligned_cols=26 Identities=15% Similarity=0.163 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.+..++|.||||+|||++++.+++.+
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 45579999999999999999999887
No 147
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.43 E-value=4.1e-05 Score=66.92 Aligned_cols=30 Identities=27% Similarity=0.340 Sum_probs=27.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCe
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPR 106 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~ 106 (177)
+..+|+|+|+||+||||+++.|++.+++++
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 345799999999999999999999999887
No 148
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.41 E-value=8.9e-05 Score=63.36 Aligned_cols=33 Identities=12% Similarity=0.148 Sum_probs=28.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~ 109 (177)
.+..|+|.||||+|||++|+.+++.++.+++.+
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i 148 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSI 148 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCeEEEE
Confidence 456799999999999999999999998876544
No 149
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.41 E-value=0.00012 Score=57.22 Aligned_cols=28 Identities=25% Similarity=0.230 Sum_probs=24.7
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
+.++..|.|+|++||||||+++.|+..+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3567889999999999999999999865
No 150
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.38 E-value=0.0001 Score=65.05 Aligned_cols=34 Identities=26% Similarity=0.313 Sum_probs=28.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhC--CCeeeCc
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE--VPRISMS 110 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lg--l~~Is~~ 110 (177)
.+..++|.||||+|||++|+.+|+.++ ++++.+.
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~ 97 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMV 97 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEe
Confidence 345799999999999999999999998 6665544
No 151
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.38 E-value=0.00011 Score=61.35 Aligned_cols=33 Identities=18% Similarity=0.137 Sum_probs=28.9
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~ 110 (177)
...|+|.|+||+|||++|+.+++.++.+++.+.
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~ 87 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMSANIKTTA 87 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEec
Confidence 346899999999999999999999998876654
No 152
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.37 E-value=9.9e-05 Score=57.11 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=28.7
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh---CCC--eeeCchhhhh
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLL---EVP--RISMSSIVRQ 115 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~l---gl~--~Is~~dLlr~ 115 (177)
..++|.|+||+|||++|+.+++.. +.. +++..+++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRE 96 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHH
Confidence 679999999999999999999876 333 4566555543
No 153
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.36 E-value=0.00013 Score=59.70 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=26.5
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (177)
Q Consensus 81 IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~ 110 (177)
++|+||||+||||+++.|+...+...+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~~~ 105 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARVPFITAS 105 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCcChHHHHHHHHHHHcCCCEEEec
Confidence 899999999999999999999877666554
No 154
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.35 E-value=0.00014 Score=62.24 Aligned_cols=39 Identities=21% Similarity=0.214 Sum_probs=31.7
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHHhC-------CCeeeCchhh
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLE-------VPRISMSSIV 113 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lg-------l~~Is~~dLl 113 (177)
..++..|.|+||+||||||+++.|+..++ +..+++++..
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 35677899999999999999999998875 4567777654
No 155
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.35 E-value=0.00012 Score=61.47 Aligned_cols=39 Identities=13% Similarity=0.054 Sum_probs=31.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC-------CCee-eCchhhh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-------VPRI-SMSSIVR 114 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg-------l~~I-s~~dLlr 114 (177)
.++..|.|.|++||||||+++.|++.++ ...+ +.++.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~ 75 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYL 75 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccC
Confidence 4678899999999999999999998774 3445 7777654
No 156
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.34 E-value=0.00011 Score=59.60 Aligned_cols=35 Identities=17% Similarity=-0.004 Sum_probs=30.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCch
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~d 111 (177)
..+..|+|+||+|+||||+|..|+++.+ ..|+.+.
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 4667899999999999999999999877 8888765
No 157
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.00015 Score=62.10 Aligned_cols=27 Identities=7% Similarity=0.043 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.++..++|.||||+|||++++.+++.+
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 477889999999999999999999987
No 158
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.34 E-value=0.00012 Score=62.93 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=28.4
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~ 109 (177)
+..|+|.||||+|||++|+.+|+.++.+++.+
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v 179 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNI 179 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence 46899999999999999999999998876654
No 159
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.33 E-value=0.00011 Score=57.32 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=24.1
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~ 105 (177)
+++.|+||+||||||+.+.|+..+++.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 478999999999999999999988744
No 160
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.31 E-value=0.00013 Score=55.26 Aligned_cols=37 Identities=16% Similarity=0.074 Sum_probs=29.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCchhh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIV 113 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~dLl 113 (177)
++..++|+|++|+||||+++.++..+ | +.+++..++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~ 76 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMP 76 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhh
Confidence 45578899999999999999999877 6 4455555543
No 161
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.29 E-value=0.00016 Score=61.15 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=25.6
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCee
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~I 107 (177)
..++|+||||+||||+++.|+..++..+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~ 80 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIH 80 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 56899999999999999999999987643
No 162
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.26 E-value=0.00017 Score=64.95 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=28.0
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~ 110 (177)
..|+|+||||+|||++|+.++...+.+++.+.
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~~~~f~~is 81 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEANVPFFHIS 81 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeeeCC
Confidence 34899999999999999999999998876553
No 163
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.26 E-value=0.00014 Score=54.22 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
+..|+|.|+||+|||++|+.|++..
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3458999999999999999999864
No 164
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.25 E-value=0.00051 Score=60.99 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=28.6
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~ 110 (177)
..++|.||||+||||+|+.|++.++..++.+.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~ 82 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERIS 82 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence 57999999999999999999999988777654
No 165
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.21 E-value=0.00021 Score=64.12 Aligned_cols=32 Identities=16% Similarity=0.102 Sum_probs=28.4
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~ 109 (177)
+..++|.||||+|||++|+.+++.+|+.++.+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~i 108 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ 108 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 45789999999999999999999999887655
No 166
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.21 E-value=0.00068 Score=56.73 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
..++|.||||+||||+++.+++.+
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 379999999999999999999987
No 167
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.19 E-value=0.00021 Score=63.04 Aligned_cols=39 Identities=21% Similarity=0.176 Sum_probs=27.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh-CCCe--eeCchhhhh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL-EVPR--ISMSSIVRQ 115 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l-gl~~--Is~~dLlr~ 115 (177)
.+..|+|.||||+|||++|+.+|+.+ +.++ ++..+++..
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~ 207 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 207 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-----
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh
Confidence 34679999999999999999999998 6554 455555543
No 168
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.18 E-value=0.0002 Score=58.93 Aligned_cols=31 Identities=23% Similarity=0.230 Sum_probs=26.9
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeee
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS 108 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is 108 (177)
+..++|.|+||+|||++|+.+++.++.+++.
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~~~~~~ 68 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELGVNLRV 68 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHTCCEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 3568999999999999999999999877653
No 169
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.18 E-value=0.00021 Score=58.53 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
..++|.||||+|||++|+.|++.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 368999999999999999999986
No 170
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.16 E-value=0.00019 Score=55.42 Aligned_cols=24 Identities=13% Similarity=0.001 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
..++|+||+||||||+++.|+..+
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 357899999999999999999765
No 171
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.16 E-value=0.00022 Score=54.06 Aligned_cols=38 Identities=13% Similarity=-0.021 Sum_probs=22.9
Q ss_pred CccccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 64 SVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 64 ~~~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
+.|-.-+.+....+.++|+|+|.+|+|||++..+|...
T Consensus 6 ~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 6 HHHGSLVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp -------------CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cccccccCCCCCCceEEEEEECCCCCCHHHHHHHHHcC
Confidence 33444444445567899999999999999999999753
No 172
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.15 E-value=0.00023 Score=54.17 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.++|.|+||+|||++++.+++.+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999999999875
No 173
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.15 E-value=0.00024 Score=59.21 Aligned_cols=37 Identities=11% Similarity=-0.122 Sum_probs=28.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh---CCC--eeeCchhh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL---EVP--RISMSSIV 113 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l---gl~--~Is~~dLl 113 (177)
.+..++|.||||+||||+++.+++.+ +.. +++..++.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~ 77 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA 77 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence 34568999999999999999999977 554 55555543
No 174
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.15 E-value=0.00026 Score=54.24 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCC
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEV 104 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl 104 (177)
..++|.|+||+|||++++.+++.++.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 46899999999999999999998754
No 175
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.13 E-value=0.00058 Score=65.20 Aligned_cols=39 Identities=18% Similarity=0.258 Sum_probs=32.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc--hhhhh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVRQ 115 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~--dLlr~ 115 (177)
.+..|++.||||+|||.+|+.+|...+.+++++. +++..
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~ 550 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTT
T ss_pred CCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhcc
Confidence 4556899999999999999999999999988875 44443
No 176
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.13 E-value=0.00022 Score=55.94 Aligned_cols=26 Identities=15% Similarity=-0.006 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++..++|+||+||||||+.+.|...+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34578999999999999999998865
No 177
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.12 E-value=0.00018 Score=60.01 Aligned_cols=30 Identities=20% Similarity=0.233 Sum_probs=26.4
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeee
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRIS 108 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is 108 (177)
..++|.||||+|||++|+.+++.++.+++.
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~~~~~ 76 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDLDFHR 76 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence 469999999999999999999999876543
No 178
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.11 E-value=0.00026 Score=59.46 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=24.6
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCC
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl 104 (177)
+..++|.||||+|||++|+.+++.++.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 468999999999999999999999874
No 179
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.10 E-value=0.00039 Score=62.88 Aligned_cols=31 Identities=26% Similarity=0.308 Sum_probs=27.1
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~ 110 (177)
.|+|+||||+|||++++.|+...+.+++.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~~~~~i~i~ 96 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEARVPFITAS 96 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 3999999999999999999999887766554
No 180
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.09 E-value=0.00033 Score=52.69 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=24.4
Q ss_pred ccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.+..+|+|+|++|+||||+..+|...
T Consensus 3 ~~~~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 3 SHMKSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4457789999999999999999999863
No 181
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.09 E-value=0.00025 Score=56.34 Aligned_cols=27 Identities=22% Similarity=0.124 Sum_probs=18.0
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHH-HHh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLS-KLL 102 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LA-k~l 102 (177)
.++..|.|+||+||||||+++.|+ ..+
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 466789999999999999999999 655
No 182
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.09 E-value=0.00026 Score=52.38 Aligned_cols=30 Identities=13% Similarity=0.050 Sum_probs=23.3
Q ss_pred CcccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 72 ~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
...|.+.++|+|+|.+|+||||+..+|...
T Consensus 8 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 8 FGNPLRKFKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp ----CEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccCCCcceEEEEECCCCCCHHHHHHHHHcC
Confidence 344567789999999999999999999753
No 183
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.08 E-value=0.00011 Score=54.70 Aligned_cols=35 Identities=9% Similarity=-0.124 Sum_probs=26.3
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhC-CCeeeCchh
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLE-VPRISMSSI 112 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lg-l~~Is~~dL 112 (177)
+..|+|.|+||+|||++|+.+++..+ +.+++..++
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~~~~~ 62 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNGTPWVSPARVEY 62 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTTSCEECCSSTTH
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCCCeEEechhhC
Confidence 34599999999999999999988776 223344443
No 184
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.07 E-value=0.00045 Score=61.30 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
....++|+|+||+|||++|+.|++.+
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 44578999999999999999999986
No 185
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.06 E-value=0.00034 Score=53.07 Aligned_cols=37 Identities=11% Similarity=0.043 Sum_probs=25.5
Q ss_pred ccccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 65 VTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 65 ~~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+++......+.+.++|+|+|.+|+||||+..+|...
T Consensus 12 ~~~~~~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 12 SGLVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp --------CCCSEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cccccccccccCcceEEEEECcCCCCHHHHHHHHhcC
Confidence 3444444455677899999999999999999999764
No 186
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.03 E-value=0.00039 Score=63.04 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=28.1
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~ 109 (177)
++..++|+||||+||||+|+.|+..++.+.+.+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i 139 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRI 139 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEE
Confidence 566899999999999999999999987665443
No 187
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.02 E-value=0.0004 Score=58.32 Aligned_cols=26 Identities=12% Similarity=0.126 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.+..++|.||||+|||++++.+++.+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999999876
No 188
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=97.01 E-value=0.00027 Score=55.99 Aligned_cols=30 Identities=27% Similarity=0.144 Sum_probs=24.8
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCC--eeeCch
Q 030464 81 WAFIGSPRAKKHVYAEMLSKLLEVP--RISMSS 111 (177)
Q Consensus 81 IlIiGpPGSGKSTlA~~LAk~lgl~--~Is~~d 111 (177)
|+|+|++|||||++|++|++. +.+ |+.++.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 789999999999999999987 654 555543
No 189
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.00 E-value=0.00035 Score=55.63 Aligned_cols=30 Identities=10% Similarity=-0.011 Sum_probs=23.8
Q ss_pred cccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 73 ~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
....++..+.|+||+||||||+++.|+..+
T Consensus 18 l~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 18 GSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ----CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred eecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 334567789999999999999999999876
No 190
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.99 E-value=0.00035 Score=55.32 Aligned_cols=22 Identities=14% Similarity=0.048 Sum_probs=20.4
Q ss_pred EEEEcCCCCCchHHHHHHHHHh
Q 030464 81 WAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 81 IlIiGpPGSGKSTlA~~LAk~l 102 (177)
|+|+||+||||+|++++|.+.+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999998876
No 191
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.99 E-value=0.00035 Score=56.98 Aligned_cols=31 Identities=16% Similarity=0.221 Sum_probs=25.8
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeee
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS 108 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is 108 (177)
.-.++|.||||+|||++|..|++.++-..++
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~~ 88 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVIS 88 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 3469999999999999999999987654444
No 192
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.99 E-value=0.00056 Score=50.29 Aligned_cols=28 Identities=18% Similarity=0.052 Sum_probs=24.2
Q ss_pred ccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
...+.++|+|+|.+|+|||++..++...
T Consensus 3 ~~~~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 3 HMTREMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 3457789999999999999999999753
No 193
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.98 E-value=0.0004 Score=53.36 Aligned_cols=26 Identities=12% Similarity=0.060 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
....+|+|+|++||||||+.+.|+..
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC
Confidence 45689999999999999999999874
No 194
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.97 E-value=0.00057 Score=51.95 Aligned_cols=37 Identities=8% Similarity=-0.036 Sum_probs=28.1
Q ss_pred ccccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 65 VTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 65 ~~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
-|........+.+.++|+|+|.+|+|||++..+|...
T Consensus 8 ~~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 8 HHHSSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp --CCCCCCCTTCEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cccccccccccCcceEEEEECcCCCCHHHHHHHHhcC
Confidence 3444444555567899999999999999999999764
No 195
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.97 E-value=0.0004 Score=57.75 Aligned_cols=34 Identities=9% Similarity=0.118 Sum_probs=27.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh------CCCeeeCc
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL------EVPRISMS 110 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l------gl~~Is~~ 110 (177)
.+..++|.|+||+||||+++.+++.+ +..++.+.
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 45578999999999999999999977 66655543
No 196
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.97 E-value=0.0004 Score=54.15 Aligned_cols=37 Identities=11% Similarity=0.062 Sum_probs=24.8
Q ss_pred ccccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 65 VTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 65 ~~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
-+++........+.++|+|+|.+|+||||+..+|...
T Consensus 13 ~~~~~~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 13 GLVPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp ---------CCSEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cccCCCCccccccceEEEEECcCCCCHHHHHHHHHhC
Confidence 3444444455567899999999999999999998764
No 197
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.97 E-value=0.00044 Score=62.21 Aligned_cols=34 Identities=12% Similarity=0.059 Sum_probs=28.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~ 110 (177)
.+..|+|.||||+|||++|+.+++..+.+++.+.
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn 270 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEE
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEE
Confidence 3456999999999999999999999987766543
No 198
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.96 E-value=0.00046 Score=52.75 Aligned_cols=39 Identities=23% Similarity=0.160 Sum_probs=27.0
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhcc
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL 117 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el 117 (177)
.++-.+.|+|++||||||+++.+.. +...++. +.++..+
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~~~--~~~~~~~-d~~~g~~ 45 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKHFK--PTEVISS-DFCRGLM 45 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHHSC--GGGEEEH-HHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHcc--CCeEEcc-HHHHHHh
Confidence 4667899999999999999997542 3444543 3444433
No 199
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.95 E-value=0.00059 Score=59.60 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=29.0
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeee
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS 108 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is 108 (177)
..++..|+|.||||+||||+++.|+..++..++.
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 3466689999999999999999999988776665
No 200
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.94 E-value=0.00037 Score=56.24 Aligned_cols=25 Identities=24% Similarity=0.165 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhC
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLE 103 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lg 103 (177)
..|+|.|+||+|||++|+.|++..+
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcC
Confidence 5689999999999999999998764
No 201
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.88 E-value=0.00066 Score=51.83 Aligned_cols=30 Identities=7% Similarity=-0.068 Sum_probs=24.2
Q ss_pred CcccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 72 ~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.....+.++|+|+|.+|+|||++..++...
T Consensus 14 ~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 14 LYFQGPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp --CCCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCCCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 334467899999999999999999888664
No 202
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.88 E-value=0.00063 Score=49.41 Aligned_cols=25 Identities=16% Similarity=0.089 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
+..+|+|+|++|+||||+..++...
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcC
Confidence 5689999999999999999998764
No 203
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.87 E-value=0.00062 Score=53.32 Aligned_cols=30 Identities=13% Similarity=0.102 Sum_probs=24.3
Q ss_pred ccCCCeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (177)
Q Consensus 74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~lg 103 (177)
...++-.+.|+||+||||||+++.|+..+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 446777899999999999999999988763
No 204
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.87 E-value=0.00062 Score=49.78 Aligned_cols=26 Identities=12% Similarity=0.119 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|++|+||||+..+|...
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999999999764
No 205
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.87 E-value=0.00044 Score=58.21 Aligned_cols=38 Identities=13% Similarity=0.090 Sum_probs=29.5
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhC----CC--eeeCchhhhh
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLE----VP--RISMSSIVRQ 115 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lg----l~--~Is~~dLlr~ 115 (177)
...++|.||||+|||++|..|+..+. .. ++++.+++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~ 195 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAID 195 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHH
Confidence 56899999999999999999987543 43 4676666654
No 206
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.87 E-value=0.00081 Score=62.78 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.+..++|+||||+|||++|+.||+.+
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 45579999999999999999999997
No 207
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.87 E-value=0.00056 Score=51.69 Aligned_cols=28 Identities=11% Similarity=0.195 Sum_probs=23.1
Q ss_pred ccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
...+.++|+|+|.+|+|||++..+|...
T Consensus 3 ~~~~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 3 NQNVKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCceEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3457789999999999999999999864
No 208
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.86 E-value=0.00041 Score=57.60 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=22.3
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhC
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLLE 103 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~lg 103 (177)
.++|.|+||+|||++|+.+++.++
T Consensus 47 ~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred eEEEECCCCccHHHHHHHHHHhCc
Confidence 499999999999999999999876
No 209
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.85 E-value=0.00076 Score=57.16 Aligned_cols=28 Identities=29% Similarity=0.226 Sum_probs=25.0
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
..++..|.|+|++||||||+++.|+..+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 4577889999999999999999998865
No 210
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.85 E-value=0.00046 Score=57.20 Aligned_cols=32 Identities=16% Similarity=0.061 Sum_probs=26.3
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~ 110 (177)
..+++.||||+|||++++.+++.++..++.+.
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~ 80 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDVNADMMFVN 80 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHTTEEEEEEE
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEc
Confidence 45667778999999999999999987766554
No 211
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.84 E-value=0.00031 Score=64.26 Aligned_cols=37 Identities=27% Similarity=0.288 Sum_probs=29.6
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC------CCeeeCchh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE------VPRISMSSI 112 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg------l~~Is~~dL 112 (177)
.++..|+|+|++||||||+++.|++.++ +.+++-+++
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 3667899999999999999999999874 334665444
No 212
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.83 E-value=0.00068 Score=49.08 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
+.++|+|+|.+|+||||+..+|...
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhC
Confidence 4578999999999999999999764
No 213
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.83 E-value=0.00079 Score=50.97 Aligned_cols=26 Identities=12% Similarity=0.050 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
...++|+|+|.+|+||||+..+|...
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcC
Confidence 46689999999999999999999764
No 214
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.80 E-value=0.00076 Score=54.27 Aligned_cols=28 Identities=18% Similarity=0.153 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg 103 (177)
.++-.++|+||+||||||+.+.|+..+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4667899999999999999999998764
No 215
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.79 E-value=0.00057 Score=64.82 Aligned_cols=34 Identities=12% Similarity=0.059 Sum_probs=29.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~ 110 (177)
.+..|+|+|||||||||+|+.|+..++.+++.+.
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~ 270 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEE
Confidence 4567999999999999999999999988766654
No 216
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.79 E-value=0.00055 Score=54.65 Aligned_cols=28 Identities=18% Similarity=0.180 Sum_probs=24.7
Q ss_pred ccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
...++..|.|.|+.||||||+++.|+..
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 3357788999999999999999999887
No 217
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.79 E-value=0.00071 Score=53.30 Aligned_cols=35 Identities=14% Similarity=0.072 Sum_probs=26.3
Q ss_pred ccccCccCc-ccCCCeEEEEEcCCCCCchHHHHHHH
Q 030464 65 VTLPDTEGR-ERRRGVHWAFIGSPRAKKHVYAEMLS 99 (177)
Q Consensus 65 ~~~~~~~~~-~~~~~~~IlIiGpPGSGKSTlA~~LA 99 (177)
.+.++.-.. ...++-.+.|+||+||||||+++.|+
T Consensus 16 ~~~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 16 IPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CHhHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 344443321 44577889999999999999999887
No 218
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.79 E-value=0.00084 Score=51.98 Aligned_cols=35 Identities=14% Similarity=0.219 Sum_probs=26.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCc
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMS 110 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~ 110 (177)
.++-.++|+|+||+||||+++.|+... .+.+++..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 466778999999999999999998543 34455543
No 219
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.78 E-value=0.00075 Score=52.47 Aligned_cols=29 Identities=14% Similarity=0.061 Sum_probs=24.8
Q ss_pred ccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
...++-.+.|+||+||||||+++.|+...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34577789999999999999999998743
No 220
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.78 E-value=0.0008 Score=62.60 Aligned_cols=38 Identities=26% Similarity=0.325 Sum_probs=29.7
Q ss_pred CCe-EEEEEcCCCCCchHHHHHHHHHhCCCe--eeCchhhh
Q 030464 77 RGV-HWAFIGSPRAKKHVYAEMLSKLLEVPR--ISMSSIVR 114 (177)
Q Consensus 77 ~~~-~IlIiGpPGSGKSTlA~~LAk~lgl~~--Is~~dLlr 114 (177)
++. .++|.||||+|||++|+.|++.++.++ +++.++..
T Consensus 486 ~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~ 526 (758)
T 1r6b_X 486 KPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYME 526 (758)
T ss_dssp SCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSS
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcc
Confidence 443 689999999999999999999998654 45555443
No 221
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.78 E-value=0.00068 Score=56.22 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhC
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLLE 103 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~lg 103 (177)
.++|.||||+||||+++.+++.++
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 499999999999999999998753
No 222
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.74 E-value=0.00091 Score=51.24 Aligned_cols=29 Identities=14% Similarity=0.149 Sum_probs=22.2
Q ss_pred cccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 73 RERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 73 ~~~~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
....+.++|+|+|.+|+|||++..+|...
T Consensus 23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -----CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred cCcCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 34467899999999999999999999753
No 223
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.74 E-value=0.00095 Score=48.51 Aligned_cols=25 Identities=12% Similarity=-0.071 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
+..+|+|+|.+|+||||+..+|...
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 5689999999999999999999764
No 224
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.74 E-value=0.00085 Score=51.88 Aligned_cols=36 Identities=19% Similarity=0.068 Sum_probs=27.9
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHHhC--CCeeeCc
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLE--VPRISMS 110 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lg--l~~Is~~ 110 (177)
..++-.++|+|+||+||||++..++...+ +.+++..
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~ 54 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTE 54 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence 45677899999999999999999987433 4455554
No 225
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.73 E-value=0.001 Score=49.33 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|.+|+|||++..+|...
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhC
Confidence 46789999999999999999999753
No 226
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.73 E-value=0.0011 Score=50.90 Aligned_cols=26 Identities=15% Similarity=0.088 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
...++|+|+|.+|+|||++..++...
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhC
Confidence 46789999999999999999999864
No 227
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.72 E-value=0.001 Score=48.59 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
+..+|+|+|.+|+||||+..+|...
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 4679999999999999999999763
No 228
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.71 E-value=0.001 Score=50.60 Aligned_cols=27 Identities=11% Similarity=-0.095 Sum_probs=23.5
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
+.+.++|+|+|.+|+||||+..+|...
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhC
Confidence 356789999999999999999999754
No 229
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.69 E-value=0.001 Score=54.33 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhC
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLE 103 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lg 103 (177)
..++|.||||+|||++|+.+++.++
T Consensus 47 ~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhc
Confidence 3599999999999999999999863
No 230
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.69 E-value=0.001 Score=51.97 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++..|.|+|++||||||++.+|+..+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 35678899999999999999998864
No 231
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.69 E-value=0.00093 Score=49.46 Aligned_cols=26 Identities=8% Similarity=-0.031 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|++|+||||+..+|...
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcC
Confidence 45689999999999999999999753
No 232
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.68 E-value=0.0014 Score=48.96 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|.+|+||||+..+|...
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 46789999999999999999999875
No 233
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.65 E-value=0.001 Score=50.43 Aligned_cols=26 Identities=8% Similarity=0.284 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|.+|+|||++..+|...
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcC
Confidence 46789999999999999999999753
No 234
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.64 E-value=0.0012 Score=48.87 Aligned_cols=26 Identities=8% Similarity=0.045 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|.+|+||||+..+|...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 46789999999999999999999765
No 235
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.63 E-value=0.0011 Score=58.42 Aligned_cols=35 Identities=9% Similarity=0.049 Sum_probs=27.5
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh-----CCC--eeeCchh
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLL-----EVP--RISMSSI 112 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~--~Is~~dL 112 (177)
...++|.||||+||||+++.++..+ +.. +++..++
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~ 171 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 5568999999999999999999876 544 4454444
No 236
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.63 E-value=0.0011 Score=48.76 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
+.++|+|+|.||+|||++..+|...
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEEEECCCCccHHHHHHHHhcC
Confidence 5689999999999999999999753
No 237
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.63 E-value=0.00056 Score=64.91 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=30.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC--chhhhh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVRQ 115 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~--~dLlr~ 115 (177)
.+..++|.||||+|||++|+.||..++..++.+ .+++..
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~ 550 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTC
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhh
Confidence 455689999999999999999999987665554 455443
No 238
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.63 E-value=0.0012 Score=49.26 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
+..+|+|+|+||+||||+..+|..
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHhC
Confidence 357899999999999999999976
No 239
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.63 E-value=0.0013 Score=47.80 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCchHHHHHHHHH
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
++|+|+|++|+||||+..++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999864
No 240
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.63 E-value=0.0014 Score=48.58 Aligned_cols=25 Identities=12% Similarity=0.142 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
.+..+|+|+|.+|+||||+..+|..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 5778999999999999999999975
No 241
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.62 E-value=0.0012 Score=55.04 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=23.9
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCC
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl 104 (177)
+..++|.||||+|||++++.+++.++.
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346899999999999999999998865
No 242
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.62 E-value=0.0011 Score=52.06 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=23.9
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
..++-.+.|+|+||+||||++..|+..
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 457778999999999999999999884
No 243
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.61 E-value=0.001 Score=55.87 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhC
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLLE 103 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~lg 103 (177)
.++|.||||+||||+++.+++.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Confidence 389999999999999999999863
No 244
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.61 E-value=0.0012 Score=50.29 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|.+|+|||++..++...
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhC
Confidence 56789999999999999999998764
No 245
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.61 E-value=0.00096 Score=55.64 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.++|.||||+||||+++.|++.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 39999999999999999999964
No 246
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.61 E-value=0.0012 Score=48.22 Aligned_cols=25 Identities=8% Similarity=0.117 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
+.++|+|+|++|+||||+..+|...
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999998754
No 247
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.61 E-value=0.0011 Score=48.46 Aligned_cols=26 Identities=12% Similarity=0.064 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|++|+||||+..+|...
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 45689999999999999999999765
No 248
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.60 E-value=0.001 Score=48.55 Aligned_cols=26 Identities=12% Similarity=0.032 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|.+|+||||+..+|...
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcC
Confidence 46789999999999999999999763
No 249
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.60 E-value=0.00099 Score=52.31 Aligned_cols=47 Identities=9% Similarity=-0.010 Sum_probs=32.1
Q ss_pred ccccCcc-CcccCCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCch
Q 030464 65 VTLPDTE-GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSS 111 (177)
Q Consensus 65 ~~~~~~~-~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~d 111 (177)
.+.++.- +....++-.++|.|+||+||||+|..++... ++.+++...
T Consensus 9 ~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 9 IPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp CTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred chhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 3344443 2334567789999999999999998886542 455666653
No 250
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.59 E-value=0.00097 Score=50.03 Aligned_cols=28 Identities=7% Similarity=0.070 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg 103 (177)
.+.++|+|+|.+|+|||++.+.+...+.
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4668999999999999999988876553
No 251
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.59 E-value=0.0048 Score=52.01 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=21.9
Q ss_pred CCeEEEE--EcCCCCCchHHHHHHHHHh
Q 030464 77 RGVHWAF--IGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 77 ~~~~IlI--iGpPGSGKSTlA~~LAk~l 102 (177)
.+..++| .|+||+|||++++.+++.+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 3456777 8999999999999998865
No 252
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.59 E-value=0.0013 Score=48.98 Aligned_cols=26 Identities=8% Similarity=-0.009 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|.+|+||||+..+|...
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999999863
No 253
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.58 E-value=0.0012 Score=49.73 Aligned_cols=26 Identities=12% Similarity=0.056 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|.+|+||||+..+|...
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcC
Confidence 46689999999999999999999865
No 254
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.58 E-value=0.0013 Score=48.25 Aligned_cols=26 Identities=8% Similarity=-0.013 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|.+|+||||+..++...
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 45689999999999999999999764
No 255
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.56 E-value=0.0014 Score=48.50 Aligned_cols=26 Identities=8% Similarity=0.035 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|++|+||||+..+|...
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 45689999999999999999998764
No 256
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.56 E-value=0.0012 Score=53.62 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.++|.||||+|||++++.+++.+
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHh
Confidence 49999999999999999999985
No 257
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.55 E-value=0.0011 Score=49.94 Aligned_cols=28 Identities=14% Similarity=0.023 Sum_probs=22.2
Q ss_pred ccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
...+..+|+|+|.+|+|||++..+|...
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcC
Confidence 3457799999999999999999999753
No 258
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.55 E-value=0.0016 Score=60.76 Aligned_cols=40 Identities=28% Similarity=0.483 Sum_probs=30.8
Q ss_pred CCCe-EEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCchhhhh
Q 030464 76 RRGV-HWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQ 115 (177)
Q Consensus 76 ~~~~-~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~dLlr~ 115 (177)
.++. .++|.||||+|||++|+.|++.+ + +..+++.++...
T Consensus 518 ~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~ 563 (758)
T 3pxi_A 518 KRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEK 563 (758)
T ss_dssp TSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccc
Confidence 3444 69999999999999999999986 3 446666666544
No 259
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.55 E-value=0.0014 Score=48.63 Aligned_cols=26 Identities=12% Similarity=-0.096 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|.+|+||||+..+|...
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhC
Confidence 46689999999999999999999864
No 260
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.55 E-value=0.0014 Score=52.25 Aligned_cols=25 Identities=12% Similarity=0.058 Sum_probs=20.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
-++.++|+|+||||||++|..+...
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 4568899999999999999886433
No 261
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.55 E-value=0.0014 Score=50.24 Aligned_cols=25 Identities=12% Similarity=0.066 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
..++|+|+|++|+||||+.+.|+..
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcC
Confidence 3578999999999999999999874
No 262
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.55 E-value=0.0015 Score=51.02 Aligned_cols=26 Identities=12% Similarity=0.033 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++..++++|+||+||||++.+++..+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 35678999999999999997777654
No 263
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.54 E-value=0.0014 Score=48.69 Aligned_cols=26 Identities=15% Similarity=0.081 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|.+|+||||+..+|...
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 56689999999999999999999764
No 264
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.54 E-value=0.0015 Score=48.38 Aligned_cols=26 Identities=8% Similarity=0.035 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|.+|+||||+..+|...
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 56789999999999999999999764
No 265
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.53 E-value=0.0011 Score=49.50 Aligned_cols=25 Identities=16% Similarity=0.111 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
.+..+|+|+|++|+||||+..++..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 5789999999999999999999863
No 266
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.53 E-value=0.0013 Score=48.01 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
+.++|+|+|.+|+||||+..+|..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 457899999999999999999976
No 267
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.52 E-value=0.0017 Score=49.12 Aligned_cols=28 Identities=18% Similarity=0.181 Sum_probs=24.4
Q ss_pred ccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.|.+..+|+|+|++|+||||+..++...
T Consensus 12 ~~~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 12 APDQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CCSSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHhcC
Confidence 3467899999999999999999999754
No 268
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.52 E-value=0.0015 Score=47.83 Aligned_cols=25 Identities=12% Similarity=0.034 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
..++|+|+|++|+|||++..+|...
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred CceEEEEECcCCCCHHHHHHHHHhC
Confidence 3578999999999999999999753
No 269
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.51 E-value=0.0016 Score=49.06 Aligned_cols=26 Identities=12% Similarity=0.012 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
...++|+|+|.+|+||||+..+|...
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 46689999999999999999999764
No 270
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.51 E-value=0.0017 Score=48.43 Aligned_cols=26 Identities=8% Similarity=0.003 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|.+|+||||+..+|...
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 56789999999999999999999864
No 271
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.50 E-value=0.0017 Score=49.02 Aligned_cols=26 Identities=12% Similarity=0.063 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|++|+||||+..+|...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999999875
No 272
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.50 E-value=0.0014 Score=48.44 Aligned_cols=25 Identities=12% Similarity=0.070 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
.+.++|+|+|.+|+||||+..+|..
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc
Confidence 4668999999999999999999864
No 273
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.49 E-value=0.0018 Score=54.86 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.++..|+|+|++||||||++..||..+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 456788999999999999999998765
No 274
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.49 E-value=0.0014 Score=49.47 Aligned_cols=28 Identities=7% Similarity=0.116 Sum_probs=22.2
Q ss_pred cccCCCeEEEEEcCCCCCchHHHHHHHH
Q 030464 73 RERRRGVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 73 ~~~~~~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
+.+....+|+|+|.+|+|||++..+|..
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3446778999999999999999999865
No 275
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.48 E-value=0.0015 Score=50.10 Aligned_cols=26 Identities=15% Similarity=0.011 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|.+|+||||+..+|...
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 57789999999999999999999864
No 276
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.48 E-value=0.0019 Score=50.10 Aligned_cols=27 Identities=15% Similarity=0.119 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.+..+|+|+|.+|+||||++.+|+..+
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998875
No 277
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.48 E-value=0.0017 Score=48.31 Aligned_cols=26 Identities=8% Similarity=0.094 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
++.++|+|+|.+|+||||+..++...
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcC
Confidence 35689999999999999999999753
No 278
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.48 E-value=0.0015 Score=53.14 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.++|.||||+|||++++.+++.+
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 39999999999999999999985
No 279
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.47 E-value=0.0016 Score=50.28 Aligned_cols=27 Identities=15% Similarity=0.058 Sum_probs=23.5
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
..+.++|+|+|.+|+||||+..+|...
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcC
Confidence 356789999999999999999999763
No 280
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.47 E-value=0.0016 Score=48.60 Aligned_cols=25 Identities=12% Similarity=0.093 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
+.++|+|+|.+|+||||+..+|...
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhC
Confidence 5689999999999999999999764
No 281
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.46 E-value=0.0018 Score=50.02 Aligned_cols=27 Identities=11% Similarity=0.035 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.+.++|+|+|++|+||||+..+|....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 466899999999999999999998753
No 282
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.46 E-value=0.0018 Score=47.73 Aligned_cols=26 Identities=12% Similarity=0.117 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|.+|+||||+..+|...
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 46789999999999999999999764
No 283
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.45 E-value=0.0014 Score=50.34 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
.+.++|+|+|.+|+||||+..+|..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHh
Confidence 5678999999999999999999864
No 284
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.45 E-value=0.0016 Score=51.27 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++.|+|++||||||+.+.|+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58899999999999999999876
No 285
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.44 E-value=0.0016 Score=53.49 Aligned_cols=38 Identities=11% Similarity=-0.009 Sum_probs=29.4
Q ss_pred ccccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 65 VTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 65 ~~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.+.++.......++-.++|+|+||+||||+++.|+...
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44455554455677889999999999999999987753
No 286
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.41 E-value=0.0021 Score=50.02 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
+..+|+|+|.+|+||||+..+|+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998874
No 287
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=96.40 E-value=0.0013 Score=56.79 Aligned_cols=32 Identities=9% Similarity=-0.084 Sum_probs=27.7
Q ss_pred cccCCCeEEEEEcCCCCCchHHHHHHHHHhCC
Q 030464 73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (177)
Q Consensus 73 ~~~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl 104 (177)
+...+++.|+|-|+-||||||+++.|++.++-
T Consensus 2 ~~~~~~~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 2 SHMVTIVRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp CCEEEEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 44567788999999999999999999998864
No 288
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.39 E-value=0.0021 Score=47.67 Aligned_cols=26 Identities=12% Similarity=0.042 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|.+|+||||+..++...
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999999754
No 289
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.39 E-value=0.0019 Score=48.67 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
++.+|+|+|.||+||||+..+|...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999864
No 290
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.39 E-value=0.002 Score=47.24 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCchHHHHHHHH
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk 100 (177)
++|+|+|.||+||||+..++..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 6899999999999999999863
No 291
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.38 E-value=0.0022 Score=48.79 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|.+|+|||++..+|...
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 46789999999999999999999764
No 292
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.38 E-value=0.0024 Score=54.53 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.++-.|.|+|++||||||+++.|+..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467889999999999999999998765
No 293
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.38 E-value=0.0018 Score=47.33 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCCchHHHHHHHH
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
.++|+|+|.||+|||++..++..
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCC
T ss_pred eEEEEEECCCCCCHHHHHHHHcC
Confidence 46899999999999999999853
No 294
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.37 E-value=0.0015 Score=53.57 Aligned_cols=32 Identities=13% Similarity=-0.049 Sum_probs=27.4
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~ 110 (177)
..++|.|++|+|||++++.+++..++.+++..
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~ 63 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERPGILIDCR 63 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcCcEEEEee
Confidence 47899999999999999999998876666654
No 295
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.37 E-value=0.0024 Score=49.78 Aligned_cols=25 Identities=20% Similarity=0.025 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
...++|+|++||||||+++.|...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4578899999999999999998764
No 296
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.36 E-value=0.0021 Score=54.60 Aligned_cols=30 Identities=27% Similarity=0.414 Sum_probs=26.1
Q ss_pred cccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 73 ~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
....++-.+.|+||+||||||+++.|+..+
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 344677889999999999999999999876
No 297
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.36 E-value=0.0015 Score=49.42 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCCchHHHHHHHH
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
.++|+|+|++|+||||+..+++.
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999976
No 298
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.35 E-value=0.0022 Score=53.66 Aligned_cols=34 Identities=12% Similarity=0.145 Sum_probs=26.4
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCch
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSS 111 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~d 111 (177)
+..|+|.|+||+|||++|+.|++.. + +..++...
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~ 63 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAA 63 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSS
T ss_pred CCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCC
Confidence 4569999999999999999999854 2 44565544
No 299
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.35 E-value=0.0019 Score=48.20 Aligned_cols=26 Identities=12% Similarity=0.080 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|++|+|||++..+|...
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 45689999999999999999999764
No 300
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.35 E-value=0.0019 Score=51.28 Aligned_cols=26 Identities=12% Similarity=0.138 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|.+|+||||+...|...
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCC
Confidence 46689999999999999999998764
No 301
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.34 E-value=0.002 Score=50.20 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
.+.++|+|+|.+|+|||++..+|..
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC
T ss_pred cceEEEEEECcCCCCHHHHHHHHHc
Confidence 4678999999999999999999975
No 302
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.33 E-value=0.0025 Score=48.05 Aligned_cols=25 Identities=12% Similarity=0.058 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
...++|+|+|.+|+||||+..+|..
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHc
Confidence 4568999999999999999999976
No 303
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.32 E-value=0.0021 Score=55.71 Aligned_cols=33 Identities=15% Similarity=0.263 Sum_probs=22.4
Q ss_pred ccCccCcccCCCeEEEEEcCCCCCchHHHHHHH
Q 030464 67 LPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLS 99 (177)
Q Consensus 67 ~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LA 99 (177)
.+..+.....+.++|+|+|.+||||||+++++.
T Consensus 22 ~l~~~~~~~~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 22 NLREDGERSARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp ---------CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHhHHHhcCccEEEEECCCCCcHHHHHHHHH
Confidence 344444445678999999999999999999984
No 304
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.32 E-value=0.003 Score=48.36 Aligned_cols=27 Identities=11% Similarity=0.075 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.++-.+.|+||.||||||+.+.|+..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 566789999999999999999999876
No 305
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.31 E-value=0.0028 Score=52.21 Aligned_cols=28 Identities=11% Similarity=0.063 Sum_probs=24.0
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
..++-.++|+||.||||||+.+.|+..+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 3566789999999999999999998754
No 306
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.30 E-value=0.0028 Score=53.15 Aligned_cols=26 Identities=15% Similarity=0.137 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLE 103 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lg 103 (177)
.-.|+|.||||+|||.+|..||..++
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 34699999999999999999998653
No 307
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.30 E-value=0.0024 Score=48.62 Aligned_cols=26 Identities=8% Similarity=0.046 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|.+|+||||+..+|...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 46689999999999999999999764
No 308
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.29 E-value=0.0038 Score=52.56 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=24.4
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
..++-.|.|+|+.||||||+++.|+..+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3467789999999999999999998865
No 309
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.29 E-value=0.0026 Score=46.37 Aligned_cols=23 Identities=17% Similarity=0.044 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCchHHHHHHHHH
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
++|+|+|.+|+|||++..++...
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999764
No 310
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.28 E-value=0.0025 Score=53.79 Aligned_cols=26 Identities=15% Similarity=0.172 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++-.|.|+||+||||||+++.|+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46688999999999999999999765
No 311
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.28 E-value=0.0018 Score=61.38 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
+..++|+|+||+|||++++.|++.+
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999999987
No 312
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.28 E-value=0.0018 Score=49.03 Aligned_cols=27 Identities=19% Similarity=0.159 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.+.++|+|+|.+|+|||++..+|....
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC
Confidence 577899999999999999999997654
No 313
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.28 E-value=0.0027 Score=48.57 Aligned_cols=27 Identities=11% Similarity=0.006 Sum_probs=22.0
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
....++|+|+|.+|+||||+..+|...
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhC
Confidence 356789999999999999999999753
No 314
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.27 E-value=0.0025 Score=47.78 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+..+|+|+|.+|+|||++..++...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999999753
No 315
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.27 E-value=0.0023 Score=48.04 Aligned_cols=26 Identities=12% Similarity=0.033 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|.+|+|||++..+|...
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcC
Confidence 46689999999999999999999764
No 316
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.27 E-value=0.0023 Score=48.93 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=21.0
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
.+..+|+|+|++|+|||++..++..
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4667999999999999999999986
No 317
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.27 E-value=0.0019 Score=48.00 Aligned_cols=26 Identities=12% Similarity=0.112 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|.+|+|||++..++...
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 46689999999999999999999864
No 318
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.27 E-value=0.0022 Score=48.78 Aligned_cols=26 Identities=12% Similarity=0.092 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|.+|+|||++..+|...
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcC
Confidence 46789999999999999999999764
No 319
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.27 E-value=0.0021 Score=60.94 Aligned_cols=37 Identities=30% Similarity=0.465 Sum_probs=28.1
Q ss_pred CCCe-EEEEEcCCCCCchHHHHHHHHHh---CCC--eeeCchh
Q 030464 76 RRGV-HWAFIGSPRAKKHVYAEMLSKLL---EVP--RISMSSI 112 (177)
Q Consensus 76 ~~~~-~IlIiGpPGSGKSTlA~~LAk~l---gl~--~Is~~dL 112 (177)
.++. .++|.||||+|||++|+.|++.+ +.+ .+++.++
T Consensus 585 ~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~ 627 (854)
T 1qvr_A 585 NRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 627 (854)
T ss_dssp SSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhc
Confidence 3443 78999999999999999999987 433 4555544
No 320
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.24 E-value=0.0022 Score=47.79 Aligned_cols=24 Identities=13% Similarity=0.138 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
+.++|+|+|.+|+||||+..+|..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 568999999999999999999974
No 321
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.24 E-value=0.0025 Score=48.32 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|.+|+|||++..++...
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcC
Confidence 46789999999999999999999774
No 322
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.24 E-value=0.0026 Score=53.44 Aligned_cols=27 Identities=19% Similarity=0.113 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.++.+|+|+|++|+||||++..||..+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 356788999999999999999998654
No 323
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.24 E-value=0.0024 Score=48.14 Aligned_cols=26 Identities=15% Similarity=0.088 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|.+|+||||+..+|...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36789999999999999999999754
No 324
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.24 E-value=0.0056 Score=51.58 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.+.++|.||||+|||++|+.+++..
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~ 42 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYV 42 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhC
Confidence 5789999999999999999999864
No 325
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.24 E-value=0.0022 Score=54.68 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=25.0
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~ 105 (177)
..++.|+|++||||||+++.|+..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 6789999999999999999999987654
No 326
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.22 E-value=0.0016 Score=58.74 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhC
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLE 103 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lg 103 (177)
..|+|.||||+|||++|+.|++..+
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred CeeEeecCchHHHHHHHHHHHHHHh
Confidence 4799999999999999999999774
No 327
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.22 E-value=0.0029 Score=47.68 Aligned_cols=25 Identities=16% Similarity=0.084 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
.+..+|+|+|.+|+|||++..+|..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999999999984
No 328
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.22 E-value=0.0025 Score=48.31 Aligned_cols=27 Identities=11% Similarity=0.020 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
...++|+|+|.+|+|||++..+|....
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 467899999999999999999998754
No 329
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.22 E-value=0.0028 Score=48.18 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=21.5
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
+.+.++|+|+|.+|+|||++..++...
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhC
Confidence 457789999999999999999998743
No 330
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.21 E-value=0.0032 Score=53.02 Aligned_cols=30 Identities=13% Similarity=0.040 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCe
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPR 106 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~ 106 (177)
.+..++|.||||+|||++|+.+++.+....
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~~ 52 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLCQQ 52 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTCSS
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhCCC
Confidence 345699999999999999999999987543
No 331
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.21 E-value=0.0018 Score=49.48 Aligned_cols=28 Identities=11% Similarity=0.065 Sum_probs=21.9
Q ss_pred ccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.+.++|+|+|.+|+|||++.+++...
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhc
Confidence 3457789999999999999999988664
No 332
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.21 E-value=0.0034 Score=46.97 Aligned_cols=26 Identities=19% Similarity=0.127 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
...++|+|+|.+|+||||+..+|...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcC
Confidence 35679999999999999999999765
No 333
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.20 E-value=0.0026 Score=49.04 Aligned_cols=26 Identities=8% Similarity=0.043 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|.+|+|||++..+|...
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhC
Confidence 56689999999999999999999653
No 334
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.18 E-value=0.003 Score=48.32 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
.+.++|+|+|.+|+|||++..++..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 5779999999999999999999854
No 335
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.18 E-value=0.0038 Score=49.73 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.+...+++.|.+|+||||++..|+..+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 467889999999999999999998654
No 336
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.17 E-value=0.0036 Score=58.16 Aligned_cols=26 Identities=23% Similarity=0.178 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.+..++|+|+||+|||++++.|++.+
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999986
No 337
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.16 E-value=0.0016 Score=49.96 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=23.1
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
..++.+|+|+|++|+||||+.+.|+..
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 356789999999999999999988643
No 338
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.16 E-value=0.0029 Score=48.81 Aligned_cols=26 Identities=8% Similarity=0.037 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|.+|+||||+..+|...
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCS
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcC
Confidence 56789999999999999999999753
No 339
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.15 E-value=0.0035 Score=53.46 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.+..+|+|+|+||+||||++..|+..+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 366789999999999999999998765
No 340
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.12 E-value=0.0027 Score=51.84 Aligned_cols=27 Identities=22% Similarity=0.121 Sum_probs=23.4
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
..++-.++|+|+|||||||++..++..
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 457778999999999999999998863
No 341
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.12 E-value=0.0031 Score=51.34 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
+.++|+|+|+||+||||+..+|...
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999754
No 342
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.10 E-value=0.0033 Score=48.37 Aligned_cols=26 Identities=15% Similarity=-0.003 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|.+|+|||++..+|...
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46689999999999999999999864
No 343
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.09 E-value=0.0029 Score=47.23 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCchHHHHHHHHH
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
++|+|+|.+|+||||+..++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCc
Confidence 58999999999999999999764
No 344
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.09 E-value=0.0033 Score=48.42 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
.+..+|+|+|++|+||||+..++..
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4678899999999999999999964
No 345
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.09 E-value=0.0049 Score=48.24 Aligned_cols=48 Identities=10% Similarity=0.015 Sum_probs=32.7
Q ss_pred CCccccCccCc-ccCCCeEEEEEcCCCCCchHHHHHHHHH----hC--CCeeeCc
Q 030464 63 RSVTLPDTEGR-ERRRGVHWAFIGSPRAKKHVYAEMLSKL----LE--VPRISMS 110 (177)
Q Consensus 63 ~~~~~~~~~~~-~~~~~~~IlIiGpPGSGKSTlA~~LAk~----lg--l~~Is~~ 110 (177)
.-.+.+|.-.. ...++-.++|.|+||+|||++|..++.. .+ +.+++..
T Consensus 14 TGi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 14 SGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp CSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 33555665443 3457778999999999999999887532 23 4466654
No 346
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.08 E-value=0.0037 Score=47.60 Aligned_cols=26 Identities=12% Similarity=0.023 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
...++|+|+|.+|+||||+..+|...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTC
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC
Confidence 35689999999999999999999764
No 347
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.08 E-value=0.0041 Score=52.96 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.++..+.|+|+|||||||+.+.|+..+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 567889999999999999999998643
No 348
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.05 E-value=0.0037 Score=48.22 Aligned_cols=26 Identities=8% Similarity=0.093 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|.+|+||||+..++...
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 57799999999999999999998763
No 349
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.05 E-value=0.0034 Score=48.74 Aligned_cols=29 Identities=14% Similarity=0.250 Sum_probs=23.8
Q ss_pred ccCCCeEEEEEcCCCCCchHHHHH-HHHHh
Q 030464 74 ERRRGVHWAFIGSPRAKKHVYAEM-LSKLL 102 (177)
Q Consensus 74 ~~~~~~~IlIiGpPGSGKSTlA~~-LAk~l 102 (177)
.+.+.++|+|+|.+|+||||+..+ +...+
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHH
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCC
Confidence 345778999999999999999998 54443
No 350
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.05 E-value=0.0034 Score=47.80 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
.+.++|+|+|.+|+|||++..+|..
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 4568999999999999999999864
No 351
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=96.05 E-value=0.0039 Score=49.74 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=21.6
Q ss_pred cccCCCeEEEEEcCCCCCchHHHHHHHH
Q 030464 73 RERRRGVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 73 ~~~~~~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
..|.+..+|+|+|.+|+|||++..++..
T Consensus 8 ~~P~k~~KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 8 GNPLRKFKLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEECcCCcCHHHHHHHHHh
Confidence 3467788999999999999999999875
No 352
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.04 E-value=0.0035 Score=48.76 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|.+|+|||++..+|...
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999999874
No 353
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.02 E-value=0.0032 Score=51.00 Aligned_cols=35 Identities=11% Similarity=0.145 Sum_probs=27.3
Q ss_pred cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++.......++-.+.|+||.||||||+.+.|+-.+
T Consensus 21 L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34444455677889999999999999999987543
No 354
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.02 E-value=0.0036 Score=55.66 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++..|+|+|++||||||++..||..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57788999999999999999998654
No 355
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.02 E-value=0.0036 Score=47.86 Aligned_cols=26 Identities=15% Similarity=0.031 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|.+|+||||+..+|...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC
Confidence 45689999999999999999999753
No 356
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.01 E-value=0.0038 Score=53.88 Aligned_cols=33 Identities=12% Similarity=0.045 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh--CCCeeeC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL--EVPRISM 109 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l--gl~~Is~ 109 (177)
++..++|.||||+|||++|.+++... .+.++++
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 44567899999999999999998754 3567777
No 357
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.01 E-value=0.0046 Score=53.59 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=24.4
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
..++-.|.|+|+.||||||+++.|+..+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 3467789999999999999999998865
No 358
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.01 E-value=0.0042 Score=55.47 Aligned_cols=26 Identities=12% Similarity=0.192 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++..|+|+|+||+||||++..||..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 57889999999999999999998754
No 359
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.98 E-value=0.003 Score=48.61 Aligned_cols=25 Identities=12% Similarity=0.098 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
...++|+|+|.+|+|||++..++..
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHh
Confidence 3568999999999999999999853
No 360
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.96 E-value=0.004 Score=49.64 Aligned_cols=26 Identities=12% Similarity=-0.075 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.++-.+.|+||.||||||+.+.|+..
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35567899999999999999998764
No 361
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.95 E-value=0.005 Score=52.65 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
....|.|+|+||+||||+...|...+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998743
No 362
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=95.94 E-value=0.0014 Score=60.08 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeee
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS 108 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is 108 (177)
....|+|+||||+|||++|+.+++..+...+.
T Consensus 326 ~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~ 357 (595)
T 3f9v_A 326 GDIHILIIGDPGTAKSQMLQFISRVAPRAVYT 357 (595)
T ss_dssp CSCCEEEEESSCCTHHHHHHSSSTTCSCEECC
T ss_pred CCcceEEECCCchHHHHHHHHHHHhCCCceec
Confidence 33489999999999999999999987654433
No 363
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.94 E-value=0.002 Score=50.08 Aligned_cols=24 Identities=13% Similarity=0.282 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
..+.|+|++||||||+++.|...+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998876
No 364
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.94 E-value=0.0026 Score=47.48 Aligned_cols=26 Identities=15% Similarity=0.005 Sum_probs=12.2
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
...++|+|+|.+|+|||++..++...
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp SEEEEEEEECCCCC------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 35689999999999999999998653
No 365
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.93 E-value=0.0036 Score=50.70 Aligned_cols=34 Identities=15% Similarity=-0.004 Sum_probs=26.8
Q ss_pred cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
++.......++-.+.|+||.||||||+.+.|+..
T Consensus 21 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3344444567788999999999999999998764
No 366
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.93 E-value=0.0033 Score=50.44 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=25.8
Q ss_pred ccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 70 TEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 70 ~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.......++-.+.|+||.||||||+.+.|+..+
T Consensus 22 ~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 22 GISLSVKKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEEETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 333444577789999999999999999987543
No 367
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.92 E-value=0.0039 Score=51.99 Aligned_cols=37 Identities=11% Similarity=-0.144 Sum_probs=27.4
Q ss_pred ccccCccC-cccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 65 VTLPDTEG-RERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 65 ~~~~~~~~-~~~~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++.-. ....++-.++|.|+||+|||++|..++..
T Consensus 84 ~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 84 SSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp CHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34444433 23346778999999999999999999864
No 368
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.92 E-value=0.0042 Score=53.15 Aligned_cols=39 Identities=15% Similarity=0.069 Sum_probs=29.9
Q ss_pred CccccCcc-CcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 64 SVTLPDTE-GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 64 ~~~~~~~~-~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
-.+.++.- +....++-.+.|+|+|||||||++..++...
T Consensus 116 G~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 116 GSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34445444 2344678889999999999999999998875
No 369
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.91 E-value=0.0054 Score=50.22 Aligned_cols=32 Identities=13% Similarity=0.067 Sum_probs=25.5
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCC--CeeeCc
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKLLEV--PRISMS 110 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~lgl--~~Is~~ 110 (177)
..++|.|++|+|||++++.+++..+. .+++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~ 64 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLR 64 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEch
Confidence 37899999999999999999988654 344443
No 370
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.90 E-value=0.0034 Score=47.27 Aligned_cols=25 Identities=20% Similarity=0.139 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
.+.++|+|+|.+|+|||++..++..
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc
Confidence 4678999999999999999999853
No 371
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.90 E-value=0.0051 Score=47.24 Aligned_cols=26 Identities=8% Similarity=0.020 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|.+|+|||++..++...
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 36689999999999999999999764
No 372
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.89 E-value=0.0054 Score=52.98 Aligned_cols=27 Identities=11% Similarity=0.058 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.++-.|+|+||+||||||+.+.|+..+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 355679999999999999999998765
No 373
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.87 E-value=0.0053 Score=47.87 Aligned_cols=26 Identities=15% Similarity=0.219 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|.+|+|||++..++...
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcC
Confidence 46789999999999999999999764
No 374
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.87 E-value=0.006 Score=49.49 Aligned_cols=27 Identities=19% Similarity=-0.103 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.++..++++|+||+||||.+..++..+
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 456789999999999999999888776
No 375
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.86 E-value=0.0047 Score=51.08 Aligned_cols=25 Identities=16% Similarity=0.137 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
..++.|+|++|+||||+.+.|+...
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999998765
No 376
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.86 E-value=0.0054 Score=48.13 Aligned_cols=26 Identities=15% Similarity=0.310 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|.+|+|||++..+|...
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999998653
No 377
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.84 E-value=0.0044 Score=50.24 Aligned_cols=35 Identities=17% Similarity=0.166 Sum_probs=27.3
Q ss_pred cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++.......++-.+.|+||.||||||+.+.|+..+
T Consensus 18 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33334445677889999999999999999997654
No 378
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.84 E-value=0.0046 Score=54.75 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++.+|+|+|+||+||||++..|+..+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998865
No 379
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.83 E-value=0.0046 Score=50.38 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.+ -.+.|+||.||||||+.+.|+-.+
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 45 678899999999999999998654
No 380
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.83 E-value=0.004 Score=47.03 Aligned_cols=26 Identities=8% Similarity=-0.017 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|.+|+|||++..+|...
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 35689999999999999999999864
No 381
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.82 E-value=0.0079 Score=54.59 Aligned_cols=28 Identities=11% Similarity=0.100 Sum_probs=24.4
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
..++-.|.|+|+.||||||+++.|+..+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 3567789999999999999999998765
No 382
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.80 E-value=0.0053 Score=49.21 Aligned_cols=26 Identities=12% Similarity=0.208 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+..+|+|+|.||+||||+..+|...
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999754
No 383
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.79 E-value=0.0044 Score=50.97 Aligned_cols=32 Identities=22% Similarity=0.249 Sum_probs=25.7
Q ss_pred cCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 71 EGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 71 ~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
......++-.+.|+||.||||||+.+.|+..+
T Consensus 25 vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 25 VSLQARAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33444677789999999999999999997644
No 384
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.78 E-value=0.0064 Score=46.59 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
...+|+|+|.||+|||++..++...
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999999854
No 385
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.78 E-value=0.0042 Score=56.71 Aligned_cols=28 Identities=25% Similarity=0.456 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl 104 (177)
.+..++|+||||+||||+|+.|+..+..
T Consensus 59 ~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 59 QKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 4468999999999999999999997753
No 386
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.77 E-value=0.0086 Score=50.82 Aligned_cols=27 Identities=11% Similarity=0.132 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.++..|.|+|++|+||||++..||..+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 466788899999999999999998765
No 387
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.76 E-value=0.0055 Score=49.95 Aligned_cols=32 Identities=19% Similarity=0.164 Sum_probs=25.8
Q ss_pred ccCcccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 70 TEGRERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 70 ~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.......++-.+.|+|+.||||||+.+.|+..
T Consensus 21 ~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 21 GVNLVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33344457778999999999999999999864
No 388
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.75 E-value=0.0035 Score=51.32 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=27.0
Q ss_pred cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++.......++-.+.|+||.||||||+.+.|+..+
T Consensus 23 l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33344445677789999999999999999987643
No 389
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.74 E-value=0.005 Score=50.27 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
.+.++|+|+|.||+||||+..+|..
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHC
Confidence 4668999999999999999999976
No 390
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.73 E-value=0.0045 Score=51.57 Aligned_cols=35 Identities=17% Similarity=0.167 Sum_probs=27.2
Q ss_pred cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++.......++-.+.|+||.||||||+.+.|+-.+
T Consensus 24 L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 33444445677889999999999999999987644
No 391
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.73 E-value=0.0047 Score=50.37 Aligned_cols=35 Identities=11% Similarity=0.259 Sum_probs=27.1
Q ss_pred cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++.-.....++-.+.|+||.||||||+.+.|+..+
T Consensus 25 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 25 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33334445677789999999999999999987654
No 392
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.73 E-value=0.0049 Score=51.02 Aligned_cols=35 Identities=20% Similarity=0.131 Sum_probs=27.2
Q ss_pred cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++.......++-.+.|+||.||||||+.+.|+..+
T Consensus 35 l~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33334445677789999999999999999997654
No 393
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.71 E-value=0.0048 Score=50.97 Aligned_cols=35 Identities=23% Similarity=0.203 Sum_probs=26.9
Q ss_pred cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++.......++-.+.|+||.||||||+.+.|+-.+
T Consensus 27 L~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 27 INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 33344445677789999999999999999987643
No 394
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.71 E-value=0.0065 Score=52.64 Aligned_cols=49 Identities=14% Similarity=-0.007 Sum_probs=34.3
Q ss_pred CccccCccCc--ccCCCeEEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCchh
Q 030464 64 SVTLPDTEGR--ERRRGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSI 112 (177)
Q Consensus 64 ~~~~~~~~~~--~~~~~~~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~dL 112 (177)
-.+.++.-.. ...++-.++|.|||||||||+|..++... + +.+|+..+.
T Consensus 45 G~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s 100 (356)
T 3hr8_A 45 GSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA 100 (356)
T ss_dssp SCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 3455555332 34577789999999999999999998763 2 446766543
No 395
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.71 E-value=0.005 Score=50.58 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=27.3
Q ss_pred cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++.......++-.+.|+||.||||||+.+.|+..+
T Consensus 36 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 33334445677889999999999999999997654
No 396
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.71 E-value=0.0061 Score=50.28 Aligned_cols=31 Identities=16% Similarity=0.153 Sum_probs=25.4
Q ss_pred cCcccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 71 EGRERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 71 ~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
......++-.+.|+||.||||||+.+.|+..
T Consensus 39 vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 39 LSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3344467778999999999999999999874
No 397
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.71 E-value=0.008 Score=49.29 Aligned_cols=34 Identities=9% Similarity=-0.091 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh---CCC--eeeCc
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL---EVP--RISMS 110 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l---gl~--~Is~~ 110 (177)
..++|++.|+||+||||++-.++..+ |.. +++++
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D 43 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVE 43 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 35789999999999999988887653 543 44554
No 398
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.70 E-value=0.0071 Score=51.33 Aligned_cols=27 Identities=26% Similarity=0.429 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.++.+|.|+|+||+||||++..|+..+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467889999999999999999998654
No 399
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.69 E-value=0.0051 Score=50.84 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=25.2
Q ss_pred CcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 72 ~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.....++-.+.|+||.||||||+.+.|+..+
T Consensus 44 sl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 44 NVHIREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3344577789999999999999999997654
No 400
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.68 E-value=0.021 Score=59.40 Aligned_cols=78 Identities=9% Similarity=0.028 Sum_probs=51.2
Q ss_pred ccCCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCchhhhhccCCCCchHHHHHHHHHcC---------CcchH
Q 030464 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVRQDLSPRSSLHKQIANAVNRG---------EVVSE 139 (177)
Q Consensus 74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G---------~~Ipd 139 (177)
...++-.|+|.||||+|||++|..++..- .+.+|++.+.+..+. + + .-| ..-|.
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~---------a-~--~~G~dl~~l~v~~~~~~ 1490 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---------A-R--KLGVDIDNLLCSQPDTG 1490 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH---------H-H--HTTCCTTTCEEECCSSH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH---------H-H--HcCCCchhceeecCChH
Confidence 45688899999999999999999986653 345888776544321 0 1 112 12244
Q ss_pred HHHHHHHHHHHHccCCCCcceEEEeCC
Q 030464 140 DIIFGLLSKRLEDGYYRGEIGFILDGL 166 (177)
Q Consensus 140 eli~~Ll~~~L~~~~~~~~~G~ILDGf 166 (177)
+-...+++...++.. -.-+|||.+
T Consensus 1491 E~~l~~~~~lvr~~~---~~lVVIDsi 1514 (2050)
T 3cmu_A 1491 EQALEICDALARSGA---VDVIVVDSV 1514 (2050)
T ss_dssp HHHHHHHHHHHHHTC---CSEEEESCG
T ss_pred HHHHHHHHHHHhcCC---CCEEEEcCh
Confidence 455566666556554 368999987
No 401
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.68 E-value=0.0051 Score=49.83 Aligned_cols=31 Identities=23% Similarity=0.247 Sum_probs=25.1
Q ss_pred CcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 72 ~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.....++-.+.|+||.||||||+.+.|+..+
T Consensus 26 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 26 DLKVPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3344577789999999999999999997653
No 402
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.66 E-value=0.0052 Score=49.45 Aligned_cols=35 Identities=26% Similarity=0.140 Sum_probs=27.2
Q ss_pred cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++.......++-.+.|+||.||||||+.+.|+..+
T Consensus 24 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33334444677889999999999999999997654
No 403
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.66 E-value=0.0086 Score=47.63 Aligned_cols=34 Identities=9% Similarity=-0.064 Sum_probs=28.2
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~ 110 (177)
..+.-|+|.|++|+||||+|..|.++ |...++-+
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~r-G~~lvaDD 47 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALIDR-GHQLVCDD 47 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHHT-TCEEEESS
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHc-CCeEecCC
Confidence 35677999999999999999999874 77777744
No 404
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.66 E-value=0.0065 Score=47.39 Aligned_cols=26 Identities=15% Similarity=0.072 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
...++|+|+|.+|+|||++..+|...
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHC
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcC
Confidence 45689999999999999999999763
No 405
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.66 E-value=0.0062 Score=49.19 Aligned_cols=26 Identities=12% Similarity=0.096 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
...++|+|+|.||+||||+...|...
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCC
Confidence 46789999999999999999998653
No 406
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.65 E-value=0.0082 Score=51.03 Aligned_cols=28 Identities=14% Similarity=-0.031 Sum_probs=24.3
Q ss_pred ccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
...++-.++|.|+||+|||++|..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457778999999999999999999875
No 407
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.65 E-value=0.0066 Score=52.37 Aligned_cols=37 Identities=8% Similarity=-0.007 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh----CCCeeeCchhh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL----EVPRISMSSIV 113 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l----gl~~Is~~dLl 113 (177)
++-.|+|+||+||||||+.+.|+..+ +-..+..++-+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~ 162 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI 162 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH
Confidence 33479999999999999999987754 34455555543
No 408
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.59 E-value=0.0059 Score=50.22 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=27.1
Q ss_pred cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++.......++-.+.|+||.||||||+.+.|+..+
T Consensus 31 l~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 33334445677789999999999999999997653
No 409
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.58 E-value=0.0049 Score=49.44 Aligned_cols=35 Identities=17% Similarity=0.137 Sum_probs=26.6
Q ss_pred cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++.......++-.+.|+||.||||||+.+.|+..+
T Consensus 25 l~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33333444577789999999999999999997654
No 410
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.54 E-value=0.0064 Score=50.07 Aligned_cols=35 Identities=11% Similarity=0.151 Sum_probs=27.0
Q ss_pred cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++.......++-.+.|+||.||||||+.+.|+..+
T Consensus 23 l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 33334445677789999999999999999987643
No 411
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.53 E-value=0.0052 Score=52.75 Aligned_cols=28 Identities=11% Similarity=0.054 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg 103 (177)
.++..|+|+|+.||||||+.+.|+..+.
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4667899999999999999999988664
No 412
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.53 E-value=0.0061 Score=49.92 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=25.5
Q ss_pred cCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 71 EGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 71 ~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
......++-.+.|+||.||||||+.+.|+..+
T Consensus 19 vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 33444577789999999999999999987643
No 413
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.52 E-value=0.0028 Score=48.00 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=7.3
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|.+|+|||++..+|...
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEEEC-----------------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhC
Confidence 35689999999999999999988764
No 414
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.51 E-value=0.0062 Score=50.69 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=25.6
Q ss_pred cCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 71 EGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 71 ~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
......++-.+.|+||.||||||+.+.|+..+
T Consensus 40 isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 40 ISWQIAKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 33344577789999999999999999997654
No 415
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.49 E-value=0.0069 Score=53.17 Aligned_cols=37 Identities=19% Similarity=0.056 Sum_probs=27.4
Q ss_pred CccccCccC-cccCCCeEEEEEcCCCCCchHHHHHHHH
Q 030464 64 SVTLPDTEG-RERRRGVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 64 ~~~~~~~~~-~~~~~~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
-.+.++.-. ....++-.+.|+|+|||||||++..|+-
T Consensus 163 G~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 163 GSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp SCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHH
Confidence 344555432 3445777899999999999999998863
No 416
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=95.48 E-value=0.0044 Score=53.31 Aligned_cols=28 Identities=14% Similarity=0.013 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg 103 (177)
.+.+.|+|-|+-||||||+++.|++.++
T Consensus 2 ~~~~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 2 PTLLRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp CEEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred CccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3567899999999999999999998774
No 417
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.48 E-value=0.0089 Score=54.08 Aligned_cols=27 Identities=15% Similarity=0.134 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.++.+|+|+|+||+||||++..|+..+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999654
No 418
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.46 E-value=0.003 Score=48.77 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
.+.++|+|+|.+|+||||+..+|..
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTT
T ss_pred cCccEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999999998863
No 419
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.44 E-value=0.011 Score=49.64 Aligned_cols=26 Identities=15% Similarity=0.074 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++..|+|+|++|+||||++..||..+
T Consensus 97 ~~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 97 IPYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SSEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36778889999999999999998765
No 420
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.44 E-value=0.0085 Score=51.41 Aligned_cols=48 Identities=15% Similarity=-0.042 Sum_probs=33.5
Q ss_pred CccccCccCc--ccCCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCch
Q 030464 64 SVTLPDTEGR--ERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSS 111 (177)
Q Consensus 64 ~~~~~~~~~~--~~~~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~d 111 (177)
-.+.++.... ...++-.++|.|+||+||||+|..++... .+.+++...
T Consensus 45 G~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 45 GSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp SCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 3444444333 34467789999999999999999998643 355777654
No 421
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.42 E-value=0.0069 Score=49.61 Aligned_cols=32 Identities=16% Similarity=0.182 Sum_probs=25.5
Q ss_pred cCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 71 EGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 71 ~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
......++-.+.|+||.||||||+.+.|+..+
T Consensus 24 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 24 LNFDLNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEEETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33444577789999999999999999987643
No 422
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.42 E-value=0.0089 Score=47.32 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
....+|+|+|.||+|||++..++..
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 4568999999999999999999974
No 423
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.41 E-value=0.0088 Score=50.25 Aligned_cols=28 Identities=18% Similarity=0.081 Sum_probs=23.9
Q ss_pred cCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
..++-.++|.|+||+|||++|..++...
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 3466789999999999999999998753
No 424
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=94.36 E-value=0.0027 Score=48.59 Aligned_cols=25 Identities=8% Similarity=0.137 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
.+.++|+|+|.+|+||||+..++..
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 5778999999999999999988764
No 425
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=95.36 E-value=0.0061 Score=53.41 Aligned_cols=28 Identities=14% Similarity=0.013 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg 103 (177)
.+++.|+|-|+-||||||+++.|++.++
T Consensus 47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 47 PTLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp CEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4667889999999999999999999874
No 426
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.35 E-value=0.0074 Score=53.83 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.++.++.|+||.||||||+++.|+..+
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 467889999999999999999997753
No 427
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.30 E-value=0.013 Score=51.67 Aligned_cols=27 Identities=11% Similarity=-0.140 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lg 103 (177)
++-.|+|+||+||||||+.+.|...+.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 445789999999999999999988764
No 428
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.27 E-value=0.011 Score=48.59 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
+.++|+|+|.||+||||+..+|...
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhCC
Confidence 5689999999999999999999764
No 429
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.27 E-value=0.013 Score=48.98 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++..|.|+|++|+||||++..||..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56678888999999999999998765
No 430
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=95.26 E-value=0.014 Score=47.05 Aligned_cols=26 Identities=8% Similarity=0.095 Sum_probs=23.5
Q ss_pred cCCCeEEEEEcCC---------CCCchHHHHHHHH
Q 030464 75 RRRGVHWAFIGSP---------RAKKHVYAEMLSK 100 (177)
Q Consensus 75 ~~~~~~IlIiGpP---------GSGKSTlA~~LAk 100 (177)
..+.++|+|+|.| |+|||++..++..
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence 3567899999999 9999999999986
No 431
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.19 E-value=0.011 Score=51.18 Aligned_cols=30 Identities=23% Similarity=0.267 Sum_probs=24.7
Q ss_pred cccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 73 ~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
....++-.+.|+||.||||||+.+.|+--.
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 24 FEVKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 344567789999999999999999998643
No 432
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.18 E-value=0.0052 Score=47.47 Aligned_cols=26 Identities=23% Similarity=0.212 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
...++|+|+|.+|+||||+..+|...
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 35689999999999999999999765
No 433
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.17 E-value=0.0087 Score=49.45 Aligned_cols=31 Identities=23% Similarity=0.233 Sum_probs=24.9
Q ss_pred cCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 71 EGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 71 ~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
...... +-.+.|+||.||||||+.+.|+..+
T Consensus 24 vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 24 INLEVN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 334445 7789999999999999999997654
No 434
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.16 E-value=0.012 Score=51.75 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.++|.|+||+|||+++..+++.+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 78999999999999999988765
No 435
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.15 E-value=0.011 Score=51.34 Aligned_cols=31 Identities=16% Similarity=0.114 Sum_probs=25.2
Q ss_pred CcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 72 ~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.....++-.+.|+||.||||||+.+.|+-..
T Consensus 24 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 24 SLSLDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 3344567789999999999999999998644
No 436
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.14 E-value=0.012 Score=48.59 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
..++|+|+|.||+||||+..+|...
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCC
Confidence 3578999999999999999999864
No 437
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.11 E-value=0.012 Score=50.67 Aligned_cols=47 Identities=11% Similarity=-0.065 Sum_probs=32.7
Q ss_pred ccccCccCc--ccCCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCch
Q 030464 65 VTLPDTEGR--ERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSS 111 (177)
Q Consensus 65 ~~~~~~~~~--~~~~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~d 111 (177)
.+.++.... ...++-.++|.|+||+||||+|..++... .+.+|+...
T Consensus 48 ~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 48 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 444444332 33467789999999999999999988653 355777743
No 438
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.09 E-value=0.012 Score=50.96 Aligned_cols=31 Identities=13% Similarity=0.224 Sum_probs=25.2
Q ss_pred CcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 72 ~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.....++-.+.|+||.||||||+.+.|+-..
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 23 NLKIKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 3344567789999999999999999998654
No 439
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.08 E-value=0.012 Score=51.41 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=25.7
Q ss_pred cCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 71 EGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 71 ~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
......++-.+.|+||.||||||+.+.|+-..
T Consensus 22 vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred eEEEECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 33344577789999999999999999998654
No 440
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=95.06 E-value=0.0041 Score=47.53 Aligned_cols=25 Identities=12% Similarity=0.065 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
.+.++|+|+|.+|+||||+..+|..
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~ 55 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFAD 55 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999999988753
No 441
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.05 E-value=0.012 Score=50.83 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=25.6
Q ss_pred cCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 71 EGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 71 ~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
......++-.+.|+||.||||||+.+.|+-..
T Consensus 34 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 34 VSFQIREGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred eEEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 33344577789999999999999999998643
No 442
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.04 E-value=0.01 Score=49.70 Aligned_cols=35 Identities=26% Similarity=0.140 Sum_probs=26.8
Q ss_pred cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++.......++-.+.|+|+.||||||+.+.|+..+
T Consensus 54 l~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 33333445677889999999999999999987643
No 443
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.04 E-value=0.013 Score=51.01 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=24.8
Q ss_pred cccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 73 ~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
....++-.+.|+||.||||||+.+.|+-..
T Consensus 32 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 32 LTIKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 344567789999999999999999998643
No 444
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.02 E-value=0.011 Score=49.23 Aligned_cols=26 Identities=19% Similarity=0.144 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+..+|.|+|+||+||||+..+|...
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCC
Confidence 35568999999999999999999753
No 445
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.02 E-value=0.0069 Score=51.48 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.+-.++|+|++||||||+.+.|+..+
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998765
No 446
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.99 E-value=0.016 Score=43.73 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhC
Q 030464 80 HWAFIGSPRAKKHVYAEMLSKLLE 103 (177)
Q Consensus 80 ~IlIiGpPGSGKSTlA~~LAk~lg 103 (177)
..+|+|+.||||||+.+.|.-.++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 678999999999999999987654
No 447
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.97 E-value=0.012 Score=47.92 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCchHHHHHHHHH
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
++|+|+|.|||||||+..+|...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 57999999999999999999764
No 448
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.97 E-value=0.01 Score=53.21 Aligned_cols=34 Identities=12% Similarity=0.058 Sum_probs=26.8
Q ss_pred ccccCccCc-ccCCCeEEEEEcCCCCCchHHHHHH
Q 030464 65 VTLPDTEGR-ERRRGVHWAFIGSPRAKKHVYAEML 98 (177)
Q Consensus 65 ~~~~~~~~~-~~~~~~~IlIiGpPGSGKSTlA~~L 98 (177)
.+.++.-.. ...++-.++|+|++||||||+++.+
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 445555554 5567888999999999999999984
No 449
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.95 E-value=0.014 Score=50.74 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=24.6
Q ss_pred cccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 73 ~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
....++-.+.|+||.||||||+.+.|+-..
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 24 LEVKDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 334566789999999999999999998643
No 450
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=94.94 E-value=0.011 Score=51.00 Aligned_cols=30 Identities=20% Similarity=0.121 Sum_probs=25.9
Q ss_pred CCCeEEEEEcCCCCCchHHH-HHHHHHhCCC
Q 030464 76 RRGVHWAFIGSPRAKKHVYA-EMLSKLLEVP 105 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA-~~LAk~lgl~ 105 (177)
.+++.|+|-|+-||||||++ +.|++.++-.
T Consensus 10 ~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~~ 40 (341)
T 1osn_A 10 MGVLRIYLDGAYGIGKTTAAEEFLHHFAITP 40 (341)
T ss_dssp EEEEEEEEEESSSSCTTHHHHHHHHTTTTSG
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHHhhC
Confidence 46688999999999999999 9999987643
No 451
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.94 E-value=0.014 Score=50.72 Aligned_cols=26 Identities=23% Similarity=0.178 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++..+.|+|++|+||||+.+.|+...
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCCEEEEECCCCccHHHHHHHHhccc
Confidence 56689999999999999999998543
No 452
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.93 E-value=0.018 Score=50.97 Aligned_cols=27 Identities=22% Similarity=0.140 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.++.+|+|+|++|+||||++..||..+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356778888999999999999998654
No 453
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.93 E-value=0.012 Score=49.09 Aligned_cols=24 Identities=13% Similarity=0.034 Sum_probs=20.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
...+|+|+|++|+||||+.+.|+.
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CCEEEEEECCCCCCHHHHHHHHhC
Confidence 446789999999999999999764
No 454
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=94.92 E-value=0.016 Score=50.73 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
..++|+|+|+||+||||+...|...
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCceEEEECCCCCCHHHHHHHHhCC
Confidence 5689999999999999999999764
No 455
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=94.91 E-value=0.015 Score=48.50 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
..++|+|+|.||+|||++..++...
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4578999999999999999997654
No 456
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.90 E-value=0.01 Score=53.65 Aligned_cols=26 Identities=8% Similarity=0.121 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.+..++|+||+||||||+.+.|+..+
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 56679999999999999999997765
No 457
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.90 E-value=0.0077 Score=51.01 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=27.5
Q ss_pred cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++.......++-.+.|+||.||||||+.+.|+..+
T Consensus 70 L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred eeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 33444455677889999999999999999987654
No 458
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.90 E-value=0.015 Score=48.61 Aligned_cols=26 Identities=15% Similarity=0.059 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
..+..+.|+|++|+||||+.+.|+ ..
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 356788999999999999999998 54
No 459
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.89 E-value=0.015 Score=50.33 Aligned_cols=47 Identities=15% Similarity=-0.012 Sum_probs=32.7
Q ss_pred ccccCccCc--ccCCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCch
Q 030464 65 VTLPDTEGR--ERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSS 111 (177)
Q Consensus 65 ~~~~~~~~~--~~~~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~d 111 (177)
.+.++.... ...++-.++|.|+||+|||++|..++... .+.+|+...
T Consensus 59 ~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 59 SLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 444444332 33466678889999999999999987653 456777764
No 460
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.88 E-value=0.015 Score=48.77 Aligned_cols=25 Identities=12% Similarity=-0.121 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
+...++|+|+.||||||+.+.|...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 3456789999999999999999864
No 461
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.87 E-value=0.021 Score=45.00 Aligned_cols=27 Identities=11% Similarity=-0.082 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.++..++++|+.||||||.+-.++.++
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 345688999999999999999998876
No 462
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.87 E-value=0.015 Score=51.70 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=21.4
Q ss_pred CCCeE--EEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVH--WAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~--IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.++-. +.|+|++|+||||+.+.|+..
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 34545 999999999999999999764
No 463
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.82 E-value=0.019 Score=48.10 Aligned_cols=48 Identities=19% Similarity=0.081 Sum_probs=34.8
Q ss_pred CCccccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCc
Q 030464 63 RSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMS 110 (177)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~ 110 (177)
...+.++.-.....++-.++|.|+||+|||++|..++... .+.+|++.
T Consensus 53 TG~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 53 SGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp CSCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 3455566554445677889999999999999999998653 24466654
No 464
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.82 E-value=0.016 Score=50.44 Aligned_cols=35 Identities=17% Similarity=0.165 Sum_probs=26.8
Q ss_pred cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++.......++-.+.|+||.||||||+.+.|+-.+
T Consensus 44 L~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 33334445677789999999999999999987643
No 465
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.81 E-value=0.016 Score=47.01 Aligned_cols=26 Identities=19% Similarity=0.041 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
...++|+|+|.||+||||+..+|...
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 35679999999999999999999764
No 466
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.80 E-value=0.017 Score=52.73 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
...++|.|+||+||||++..|...+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999987754
No 467
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.79 E-value=0.01 Score=51.16 Aligned_cols=30 Identities=17% Similarity=0.362 Sum_probs=24.7
Q ss_pred cccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 73 ~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
....++-.+.|+||.||||||+.+.|+-..
T Consensus 21 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 21 LKVESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 344567789999999999999999998643
No 468
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.78 E-value=0.016 Score=50.76 Aligned_cols=34 Identities=12% Similarity=0.138 Sum_probs=26.5
Q ss_pred cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
++.......++-.+.|+||.||||||+.+.|+..
T Consensus 37 L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred eeceeEEEcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 3333344567778999999999999999999853
No 469
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.72 E-value=0.02 Score=50.28 Aligned_cols=46 Identities=17% Similarity=0.133 Sum_probs=31.8
Q ss_pred ccccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh----C--CCeeeCc
Q 030464 65 VTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL----E--VPRISMS 110 (177)
Q Consensus 65 ~~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l----g--l~~Is~~ 110 (177)
.+.++.-.....++-.++|.|+||+||||++..++... | +.+++..
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 33344443344577789999999999999999987642 4 4466653
No 470
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.71 E-value=0.014 Score=48.66 Aligned_cols=25 Identities=12% Similarity=0.084 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+..+.|+|++||||||+.+.|+..
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred cCCeEEEECCCCCcHHHHHHHhccc
Confidence 5668899999999999999998653
No 471
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.68 E-value=0.017 Score=50.90 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
+...+.|+|++|+||||+.+.|+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 445899999999999999999987
No 472
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.53 E-value=0.019 Score=46.55 Aligned_cols=25 Identities=8% Similarity=0.025 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
+.++|+|+|.+|+||||+...|...
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 5689999999999999999999754
No 473
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.50 E-value=0.028 Score=46.03 Aligned_cols=26 Identities=15% Similarity=0.028 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
...++|+|+|.||+||||+..+|...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 45678999999999999999999754
No 474
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=94.50 E-value=0.024 Score=46.22 Aligned_cols=26 Identities=8% Similarity=0.064 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|.+|+|||++..++...
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~ 178 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTN 178 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceeEEEEECCCCCChHHHHHHHHhC
Confidence 45689999999999999999998753
No 475
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.48 E-value=0.021 Score=46.21 Aligned_cols=26 Identities=12% Similarity=0.009 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.++|+|+|.+|+||||+...|...
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 36789999999999999999999764
No 476
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.48 E-value=0.011 Score=51.08 Aligned_cols=31 Identities=16% Similarity=0.336 Sum_probs=25.2
Q ss_pred CcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 72 ~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
.....++-.+.|+||.||||||+.+.|+-..
T Consensus 25 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 25 NINIENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3344567789999999999999999998643
No 477
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.47 E-value=0.023 Score=50.90 Aligned_cols=29 Identities=7% Similarity=-0.065 Sum_probs=24.5
Q ss_pred ccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
...++-.++|+|+||+||||+++.++...
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34577789999999999999999998653
No 478
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=94.47 E-value=0.023 Score=49.74 Aligned_cols=27 Identities=15% Similarity=0.345 Sum_probs=23.9
Q ss_pred ccCCCeEEEEEcCCCCCchHHHHHHHH
Q 030464 74 ERRRGVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
...++.+|.|+|+||+||||+.+.|..
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 335678999999999999999999987
No 479
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.45 E-value=0.026 Score=49.95 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++..|+|+|++|+||||++..||..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56678888999999999999998765
No 480
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=94.43 E-value=0.023 Score=48.28 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
....+|+|+|+||+||||+...|+..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36679999999999999999999764
No 481
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.42 E-value=0.023 Score=51.58 Aligned_cols=30 Identities=10% Similarity=0.159 Sum_probs=25.2
Q ss_pred cccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 73 ~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
+.+.++-.+.|+||.||||||+.+.|+..+
T Consensus 20 ~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 20 PTPKNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CCCCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 345677889999999999999999997643
No 482
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=94.37 E-value=0.019 Score=48.38 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
.+.++|+|+|.+|+|||++..+|..
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~ 187 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKL 187 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCS
T ss_pred cCcceEEEECCCCccHHHHHHHHhC
Confidence 5678999999999999999998864
No 483
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.35 E-value=0.022 Score=51.71 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=27.7
Q ss_pred cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++.-.....++-.+.|+||.||||||+.+.|+..+
T Consensus 359 l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred cccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34444445677889999999999999999998765
No 484
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.34 E-value=0.021 Score=52.08 Aligned_cols=35 Identities=14% Similarity=0.202 Sum_probs=27.7
Q ss_pred cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
++.-.....++-.+.|+||.||||||+.+.|+..+
T Consensus 371 l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 371 LKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred ccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 34444455677899999999999999999997655
No 485
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.34 E-value=0.021 Score=46.52 Aligned_cols=23 Identities=13% Similarity=0.066 Sum_probs=20.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLS 99 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LA 99 (177)
...+|+|+|.+|+||||+...|.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~ 29 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLF 29 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHh
Confidence 45789999999999999998863
No 486
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.32 E-value=0.032 Score=47.66 Aligned_cols=33 Identities=21% Similarity=0.041 Sum_probs=27.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~ 110 (177)
.+.-|+|+|++|+||||+|..|.++ |...++-+
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~dD 175 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRLVADD 175 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESS
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCceecCC
Confidence 4678999999999999999999775 77777643
No 487
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.30 E-value=0.024 Score=48.42 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
...+++|+|++||||||+++.|...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 4567899999999999999988654
No 488
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.25 E-value=0.028 Score=48.26 Aligned_cols=31 Identities=10% Similarity=0.018 Sum_probs=26.6
Q ss_pred cccCCCeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464 73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (177)
Q Consensus 73 ~~~~~~~~IlIiGpPGSGKSTlA~~LAk~lg 103 (177)
....++-++.|+|++|+||||+.+.|+....
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3346788999999999999999999998764
No 489
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.24 E-value=0.026 Score=48.74 Aligned_cols=35 Identities=9% Similarity=0.092 Sum_probs=25.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh-----C--CCeeeCch
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL-----E--VPRISMSS 111 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l-----g--l~~Is~~d 111 (177)
.++ ++.|.|+||+||||+|-.++... | +.+|+..+
T Consensus 27 ~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 27 QSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp CSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred cCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 355 68999999999999998876542 2 44666654
No 490
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.21 E-value=0.026 Score=47.16 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+...|+|+|.||+||||+..+|...
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35567999999999999999999753
No 491
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.10 E-value=0.024 Score=50.04 Aligned_cols=25 Identities=12% Similarity=0.016 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 77 ~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
....|+|+|++|+||||+.+.|+..
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTC
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCC
Confidence 3456899999999999999999764
No 492
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.08 E-value=0.031 Score=49.44 Aligned_cols=31 Identities=16% Similarity=0.231 Sum_probs=26.7
Q ss_pred cccCCCeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464 73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (177)
Q Consensus 73 ~~~~~~~~IlIiGpPGSGKSTlA~~LAk~lg 103 (177)
....++-++.|+|++||||||+.+.|+....
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 3446788999999999999999999998764
No 493
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.01 E-value=0.026 Score=48.94 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCchHHHHHHHHH
Q 030464 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 79 ~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
++|.|+|.||+||||+...|...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999875
No 494
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.95 E-value=0.035 Score=48.60 Aligned_cols=46 Identities=15% Similarity=0.029 Sum_probs=31.7
Q ss_pred ccccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh----C--CCeeeCc
Q 030464 65 VTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL----E--VPRISMS 110 (177)
Q Consensus 65 ~~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l----g--l~~Is~~ 110 (177)
.+.++.......++-.++|.|+||+|||++|..++... | +.++++.
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 33444433334567789999999999999999987642 3 4466664
No 495
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=93.93 E-value=0.035 Score=49.68 Aligned_cols=28 Identities=18% Similarity=0.095 Sum_probs=24.1
Q ss_pred ccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (177)
Q Consensus 74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~ 101 (177)
.+.+.++|+|+|.||+||||+..+|...
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~ 64 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGE 64 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcC
Confidence 3567799999999999999999999764
No 496
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=93.93 E-value=0.028 Score=49.33 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=21.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 76 ~~~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
++.++|+|+|.||+||||+..+|..
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEE
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4567899999999999999999865
No 497
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.92 E-value=0.019 Score=52.13 Aligned_cols=34 Identities=15% Similarity=0.247 Sum_probs=27.0
Q ss_pred CccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 69 DTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 69 ~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
+.-.....++-.+.|+||.||||||+.+.|+..+
T Consensus 360 ~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 360 RNINLKIPAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 3333444677889999999999999999997765
No 498
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=93.90 E-value=0.028 Score=51.13 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=26.9
Q ss_pred CccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 69 DTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 69 ~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
+.-.....++-.+.|+||.||||||+.+.|+..+
T Consensus 361 ~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 361 QDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3333444677789999999999999999997755
No 499
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=93.88 E-value=0.035 Score=49.43 Aligned_cols=23 Identities=17% Similarity=0.036 Sum_probs=19.9
Q ss_pred CeEEEEEcCCCCCchHHHHHHHH
Q 030464 78 GVHWAFIGSPRAKKHVYAEMLSK 100 (177)
Q Consensus 78 ~~~IlIiGpPGSGKSTlA~~LAk 100 (177)
...|+|.|++|+||||+|+.++.
T Consensus 147 ~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 147 PGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHC
T ss_pred CceEEEEcCCCCCHHHHHHHHHh
Confidence 45688999999999999999864
No 500
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.85 E-value=0.033 Score=50.42 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=24.5
Q ss_pred ccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (177)
Q Consensus 74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~l 102 (177)
...++-++.|+|+.||||||+.+.|+-.+
T Consensus 43 ~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 43 VVKEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34577789999999999999999998643
Done!