Query 030465
Match_columns 177
No_of_seqs 242 out of 1613
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 14:08:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030465.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030465hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.9 1.9E-20 4.1E-25 138.9 14.0 82 77-166 34-115 (144)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 8.1E-19 1.8E-23 146.4 12.2 84 77-168 269-352 (352)
3 TIGR01659 sex-lethal sex-letha 99.8 9.8E-18 2.1E-22 140.3 15.5 81 76-164 106-186 (346)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 5.2E-18 1.1E-22 141.6 10.7 81 77-165 3-83 (352)
5 TIGR01659 sex-lethal sex-letha 99.7 3.4E-17 7.3E-22 137.1 11.1 83 77-165 193-275 (346)
6 KOG0122 Translation initiation 99.7 2.7E-17 5.9E-22 128.5 9.0 83 75-165 187-269 (270)
7 KOG0121 Nuclear cap-binding pr 99.7 2.8E-17 6E-22 117.2 7.4 79 77-163 36-114 (153)
8 PF00076 RRM_1: RNA recognitio 99.7 6.4E-17 1.4E-21 104.2 8.3 67 80-150 1-67 (70)
9 KOG0107 Alternative splicing f 99.7 1.2E-16 2.6E-21 119.5 8.5 80 77-169 10-89 (195)
10 KOG0113 U1 small nuclear ribon 99.7 3.4E-16 7.3E-21 125.5 11.1 86 74-167 98-183 (335)
11 TIGR01645 half-pint poly-U bin 99.6 8.8E-16 1.9E-20 135.8 10.7 83 77-167 204-286 (612)
12 KOG0105 Alternative splicing f 99.6 6E-16 1.3E-20 116.9 7.5 78 77-165 6-83 (241)
13 KOG0125 Ataxin 2-binding prote 99.6 1.3E-15 2.8E-20 123.5 9.5 79 75-163 94-172 (376)
14 KOG0117 Heterogeneous nuclear 99.6 2.1E-15 4.5E-20 126.5 10.6 81 77-164 83-163 (506)
15 PLN03120 nucleic acid binding 99.6 2E-15 4.4E-20 120.5 10.0 76 77-164 4-79 (260)
16 TIGR01648 hnRNP-R-Q heterogene 99.6 2.2E-15 4.7E-20 132.9 10.7 79 76-162 57-135 (578)
17 TIGR01645 half-pint poly-U bin 99.6 2E-15 4.3E-20 133.6 10.2 80 77-164 107-186 (612)
18 TIGR01622 SF-CC1 splicing fact 99.6 4.3E-15 9.3E-20 128.3 11.0 80 77-164 186-265 (457)
19 PF14259 RRM_6: RNA recognitio 99.6 6.6E-15 1.4E-19 95.4 9.0 67 80-150 1-67 (70)
20 TIGR01642 U2AF_lg U2 snRNP aux 99.6 6.6E-15 1.4E-19 128.6 11.9 81 76-164 294-374 (509)
21 TIGR01628 PABP-1234 polyadenyl 99.6 3.9E-15 8.6E-20 131.8 10.1 78 79-164 2-79 (562)
22 KOG0145 RNA-binding protein EL 99.6 8.4E-15 1.8E-19 115.8 10.1 81 77-165 41-121 (360)
23 TIGR01628 PABP-1234 polyadenyl 99.6 5.2E-15 1.1E-19 131.0 9.6 81 77-166 285-365 (562)
24 KOG4207 Predicted splicing fac 99.6 3.6E-15 7.9E-20 114.3 7.4 80 77-164 13-92 (256)
25 KOG0149 Predicted RNA-binding 99.6 2.4E-15 5.3E-20 117.1 6.3 77 77-162 12-88 (247)
26 KOG0126 Predicted RNA-binding 99.6 5.3E-16 1.1E-20 116.7 1.5 81 76-164 34-114 (219)
27 TIGR01622 SF-CC1 splicing fact 99.6 2E-14 4.3E-19 124.1 11.5 80 76-164 88-167 (457)
28 KOG0108 mRNA cleavage and poly 99.6 7.2E-15 1.6E-19 125.5 7.9 82 78-167 19-100 (435)
29 KOG0114 Predicted RNA-binding 99.6 3.7E-14 8E-19 97.8 9.9 82 70-162 11-92 (124)
30 KOG0148 Apoptosis-promoting RN 99.6 9.3E-15 2E-19 116.0 7.8 86 77-170 62-147 (321)
31 TIGR01648 hnRNP-R-Q heterogene 99.6 3.5E-14 7.7E-19 125.3 11.6 75 77-167 233-309 (578)
32 PLN03121 nucleic acid binding 99.5 3E-14 6.5E-19 112.3 9.7 75 77-163 5-79 (243)
33 KOG0144 RNA-binding protein CU 99.5 3E-14 6.5E-19 119.2 9.7 87 77-168 34-120 (510)
34 PLN03213 repressor of silencin 99.5 2.2E-14 4.7E-19 122.0 8.9 76 77-164 10-87 (759)
35 KOG0130 RNA-binding protein RB 99.5 1.7E-14 3.7E-19 103.9 7.0 81 77-165 72-152 (170)
36 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 3.8E-14 8.3E-19 123.6 10.6 77 76-165 274-351 (481)
37 KOG0111 Cyclophilin-type pepti 99.5 7E-15 1.5E-19 113.8 4.8 85 75-167 8-92 (298)
38 smart00362 RRM_2 RNA recogniti 99.5 6.4E-14 1.4E-18 89.2 8.6 71 79-159 1-71 (72)
39 KOG0117 Heterogeneous nuclear 99.5 2.3E-14 5.1E-19 120.2 8.1 77 77-169 259-335 (506)
40 COG0724 RNA-binding proteins ( 99.5 5.2E-14 1.1E-18 110.7 9.7 79 77-163 115-193 (306)
41 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 4.6E-14 1E-18 123.1 10.0 75 77-165 2-78 (481)
42 KOG0148 Apoptosis-promoting RN 99.5 4.9E-14 1.1E-18 111.9 8.9 75 77-165 164-238 (321)
43 KOG0144 RNA-binding protein CU 99.5 1.4E-14 3.1E-19 121.1 5.7 87 77-169 124-210 (510)
44 smart00360 RRM RNA recognition 99.5 1.5E-13 3.3E-18 87.1 8.1 70 82-159 1-70 (71)
45 KOG0109 RNA-binding protein LA 99.5 3.8E-14 8.3E-19 113.5 5.3 72 78-165 3-74 (346)
46 KOG0415 Predicted peptidyl pro 99.5 6.9E-14 1.5E-18 114.7 6.3 81 77-165 239-319 (479)
47 KOG0131 Splicing factor 3b, su 99.5 1.2E-13 2.5E-18 104.1 6.2 82 74-163 6-87 (203)
48 cd00590 RRM RRM (RNA recogniti 99.5 1E-12 2.2E-17 84.0 9.6 74 79-161 1-74 (74)
49 KOG4206 Spliceosomal protein s 99.4 8.5E-13 1.8E-17 102.4 7.6 78 77-165 9-90 (221)
50 KOG0146 RNA-binding protein ET 99.4 4.3E-13 9.3E-18 106.6 5.4 83 76-166 284-366 (371)
51 KOG0145 RNA-binding protein EL 99.4 3E-12 6.5E-17 101.5 9.7 81 77-165 278-358 (360)
52 KOG0127 Nucleolar protein fibr 99.4 2.2E-12 4.7E-17 110.8 8.3 80 77-165 117-196 (678)
53 KOG4212 RNA-binding protein hn 99.3 4.1E-12 8.9E-17 106.8 8.1 77 77-162 44-121 (608)
54 KOG0132 RNA polymerase II C-te 99.3 3.5E-12 7.6E-17 113.1 7.6 79 77-169 421-499 (894)
55 KOG0127 Nucleolar protein fibr 99.3 5.1E-12 1.1E-16 108.6 8.4 80 77-164 292-377 (678)
56 PF13893 RRM_5: RNA recognitio 99.3 1.1E-11 2.4E-16 77.0 7.8 56 94-162 1-56 (56)
57 KOG0146 RNA-binding protein ET 99.3 1.1E-11 2.3E-16 98.7 7.4 87 77-169 19-105 (371)
58 KOG0109 RNA-binding protein LA 99.3 5.9E-12 1.3E-16 101.1 5.5 74 76-165 77-150 (346)
59 smart00361 RRM_1 RNA recogniti 99.3 2.5E-11 5.3E-16 79.1 7.4 63 91-159 2-69 (70)
60 KOG1457 RNA binding protein (c 99.3 1.6E-10 3.4E-15 90.0 12.7 92 74-169 31-122 (284)
61 KOG0124 Polypyrimidine tract-b 99.3 6.1E-12 1.3E-16 103.8 5.0 77 77-161 113-189 (544)
62 KOG0147 Transcriptional coacti 99.2 1E-11 2.2E-16 106.6 6.3 77 78-162 279-355 (549)
63 KOG4208 Nucleolar RNA-binding 99.2 2.8E-11 6.1E-16 92.9 7.4 78 77-162 49-127 (214)
64 KOG0131 Splicing factor 3b, su 99.2 1.9E-11 4E-16 92.3 6.0 85 77-169 96-181 (203)
65 KOG0123 Polyadenylate-binding 99.2 3.5E-11 7.6E-16 101.6 8.3 80 79-169 78-157 (369)
66 TIGR01642 U2AF_lg U2 snRNP aux 99.2 1.6E-10 3.4E-15 101.1 9.3 83 76-163 408-500 (509)
67 KOG4212 RNA-binding protein hn 99.1 3.7E-10 8E-15 95.2 10.8 73 77-162 536-608 (608)
68 KOG0110 RNA-binding protein (R 99.1 2E-10 4.3E-15 101.3 8.2 82 78-164 516-597 (725)
69 KOG0110 RNA-binding protein (R 99.1 6.6E-11 1.4E-15 104.3 4.5 81 77-165 613-693 (725)
70 KOG0153 Predicted RNA-binding 99.1 6.5E-10 1.4E-14 91.2 8.6 74 77-164 228-302 (377)
71 KOG0533 RRM motif-containing p 99.0 9.6E-10 2.1E-14 87.5 8.0 80 77-165 83-162 (243)
72 KOG4661 Hsp27-ERE-TATA-binding 99.0 5.6E-10 1.2E-14 96.8 7.0 81 77-165 405-485 (940)
73 KOG0124 Polypyrimidine tract-b 99.0 6.3E-10 1.4E-14 92.0 6.6 81 77-165 210-290 (544)
74 KOG0123 Polyadenylate-binding 99.0 2.5E-09 5.4E-14 90.5 8.3 73 78-164 2-74 (369)
75 KOG0106 Alternative splicing f 98.9 1E-09 2.2E-14 85.8 4.9 72 78-165 2-73 (216)
76 KOG4209 Splicing factor RNPS1, 98.9 3.8E-09 8.3E-14 83.9 7.6 80 77-165 101-180 (231)
77 KOG1548 Transcription elongati 98.9 5.9E-09 1.3E-13 85.6 8.6 80 77-165 134-221 (382)
78 KOG4205 RNA-binding protein mu 98.9 1.6E-09 3.4E-14 89.4 5.1 70 76-149 5-74 (311)
79 KOG1457 RNA binding protein (c 98.9 1.4E-09 2.9E-14 84.8 4.0 70 75-151 208-277 (284)
80 KOG0116 RasGAP SH3 binding pro 98.9 6.1E-09 1.3E-13 88.9 8.3 81 75-164 286-366 (419)
81 KOG4660 Protein Mei2, essentia 98.8 3.9E-09 8.4E-14 91.2 4.7 67 76-150 74-140 (549)
82 KOG4454 RNA binding protein (R 98.8 2E-09 4.3E-14 83.6 2.5 75 77-161 9-83 (267)
83 KOG0151 Predicted splicing reg 98.8 1.9E-08 4E-13 89.2 7.8 83 77-164 174-256 (877)
84 KOG4206 Spliceosomal protein s 98.8 6E-08 1.3E-12 75.6 8.9 75 77-163 146-220 (221)
85 KOG0226 RNA-binding proteins [ 98.7 1.4E-08 3.1E-13 80.4 4.4 79 76-162 189-267 (290)
86 KOG4205 RNA-binding protein mu 98.7 2.3E-08 4.9E-13 82.5 5.4 80 77-165 97-176 (311)
87 PF04059 RRM_2: RNA recognitio 98.7 2.5E-07 5.5E-12 63.9 9.1 85 78-166 2-88 (97)
88 KOG1190 Polypyrimidine tract-b 98.7 3.3E-07 7.1E-12 77.0 11.3 78 77-167 297-375 (492)
89 KOG1995 Conserved Zn-finger pr 98.6 2.1E-07 4.5E-12 76.9 9.2 82 77-166 66-155 (351)
90 KOG0120 Splicing factor U2AF, 98.5 7.8E-08 1.7E-12 83.4 4.8 82 74-163 286-367 (500)
91 KOG1190 Polypyrimidine tract-b 98.4 7.1E-07 1.5E-11 75.0 6.7 77 77-164 414-490 (492)
92 PF11608 Limkain-b1: Limkain b 98.4 2.9E-06 6.4E-11 56.7 7.4 68 78-163 3-75 (90)
93 KOG0147 Transcriptional coacti 98.3 1.7E-07 3.8E-12 81.0 1.9 80 75-163 177-256 (549)
94 KOG4211 Splicing factor hnRNP- 98.3 2.3E-06 5.1E-11 73.3 7.6 74 77-162 10-83 (510)
95 KOG4849 mRNA cleavage factor I 98.2 1.7E-06 3.7E-11 71.6 3.6 79 77-162 80-160 (498)
96 KOG4210 Nuclear localization s 98.1 3.4E-06 7.4E-11 69.2 4.9 83 77-168 184-267 (285)
97 KOG1456 Heterogeneous nuclear 98.0 3.9E-05 8.5E-10 64.2 8.7 79 76-165 119-199 (494)
98 KOG4307 RNA binding protein RB 98.0 0.00014 3E-09 65.2 12.3 74 78-160 868-942 (944)
99 PF08777 RRM_3: RNA binding mo 97.9 2.8E-05 6.2E-10 54.5 6.0 59 78-145 2-60 (105)
100 KOG0106 Alternative splicing f 97.9 7E-06 1.5E-10 64.4 3.0 69 77-161 99-167 (216)
101 KOG2314 Translation initiation 97.9 2.9E-05 6.3E-10 67.9 6.4 77 77-161 58-140 (698)
102 KOG1855 Predicted RNA-binding 97.8 3.7E-05 7.9E-10 65.2 5.4 71 76-146 230-310 (484)
103 KOG4211 Splicing factor hnRNP- 97.8 0.00015 3.2E-09 62.5 8.8 66 77-147 103-169 (510)
104 KOG0129 Predicted RNA-binding 97.8 8E-05 1.7E-09 64.5 7.0 65 77-142 259-326 (520)
105 KOG0105 Alternative splicing f 97.7 0.0012 2.7E-08 50.6 11.5 63 77-149 115-177 (241)
106 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.00011 2.5E-09 45.1 4.6 52 78-139 2-53 (53)
107 KOG0112 Large RNA-binding prot 97.6 7.7E-05 1.7E-09 68.2 5.3 77 77-165 455-531 (975)
108 KOG1456 Heterogeneous nuclear 97.6 0.0026 5.7E-08 53.5 13.8 77 76-165 286-363 (494)
109 KOG2416 Acinus (induces apopto 97.6 8.5E-05 1.8E-09 65.3 5.0 79 75-164 442-521 (718)
110 COG5175 MOT2 Transcriptional r 97.6 0.00022 4.7E-09 59.1 7.0 82 77-163 114-201 (480)
111 PF08675 RNA_bind: RNA binding 97.6 0.00063 1.4E-08 45.5 7.6 56 77-144 9-64 (87)
112 KOG2193 IGF-II mRNA-binding pr 97.5 6.7E-05 1.4E-09 63.7 2.6 79 78-169 2-80 (584)
113 KOG0129 Predicted RNA-binding 97.5 0.00039 8.5E-09 60.3 6.9 67 72-141 365-432 (520)
114 KOG3152 TBP-binding protein, a 97.4 0.00012 2.6E-09 58.4 2.8 75 77-151 74-157 (278)
115 KOG4676 Splicing factor, argin 97.3 0.0003 6.5E-09 59.2 4.3 72 78-150 8-79 (479)
116 KOG0120 Splicing factor U2AF, 97.2 0.0016 3.4E-08 57.0 7.6 81 77-162 399-489 (500)
117 KOG1548 Transcription elongati 97.1 0.002 4.4E-08 53.5 6.8 74 77-162 265-349 (382)
118 KOG0128 RNA-binding protein SA 97.1 0.00028 6E-09 64.3 1.9 77 77-162 736-812 (881)
119 KOG4307 RNA binding protein RB 97.0 0.0017 3.8E-08 58.4 6.5 83 70-161 427-510 (944)
120 PF03467 Smg4_UPF3: Smg-4/UPF3 97.0 0.0021 4.5E-08 49.2 5.7 87 77-164 7-97 (176)
121 KOG1365 RNA-binding protein Fu 96.9 0.0074 1.6E-07 51.0 8.9 60 78-141 162-225 (508)
122 PF10309 DUF2414: Protein of u 96.8 0.0044 9.5E-08 39.2 5.5 54 78-142 6-62 (62)
123 PF05172 Nup35_RRM: Nup53/35/4 96.6 0.011 2.4E-07 41.0 6.7 78 77-162 6-89 (100)
124 PF07576 BRAP2: BRCA1-associat 96.6 0.081 1.8E-06 37.4 10.9 78 78-162 14-92 (110)
125 KOG0128 RNA-binding protein SA 96.5 0.00019 4.1E-09 65.4 -3.3 68 77-147 667-734 (881)
126 KOG2253 U1 snRNP complex, subu 96.5 0.005 1.1E-07 55.0 5.5 62 77-150 40-101 (668)
127 KOG1365 RNA-binding protein Fu 96.4 0.0084 1.8E-07 50.7 6.0 67 77-147 280-349 (508)
128 KOG2202 U2 snRNP splicing fact 96.4 0.0013 2.9E-08 52.5 1.3 61 94-163 85-146 (260)
129 PF08952 DUF1866: Domain of un 96.2 0.023 5E-07 42.0 6.9 53 93-162 52-104 (146)
130 KOG0115 RNA-binding protein p5 96.2 0.005 1.1E-07 49.3 3.5 63 77-143 31-93 (275)
131 KOG0112 Large RNA-binding prot 96.1 0.001 2.3E-08 61.1 -0.9 70 76-149 371-440 (975)
132 KOG2591 c-Mpl binding protein, 95.4 0.053 1.1E-06 48.0 6.7 63 77-149 175-246 (684)
133 KOG4574 RNA-binding protein (c 95.2 0.013 2.7E-07 54.0 2.3 74 79-164 300-373 (1007)
134 PF15023 DUF4523: Protein of u 95.1 0.12 2.7E-06 38.1 6.8 70 77-162 86-159 (166)
135 KOG1996 mRNA splicing factor [ 95.0 0.082 1.8E-06 43.4 6.3 65 91-162 300-364 (378)
136 KOG2068 MOT2 transcription fac 94.6 0.02 4.3E-07 47.5 1.8 82 77-164 77-162 (327)
137 PF04847 Calcipressin: Calcipr 94.2 0.088 1.9E-06 40.6 4.5 62 90-165 8-71 (184)
138 KOG4660 Protein Mei2, essentia 92.9 0.17 3.6E-06 44.8 4.6 87 77-167 361-475 (549)
139 KOG0804 Cytoplasmic Zn-finger 92.5 0.95 2.1E-05 39.3 8.4 71 77-152 74-145 (493)
140 KOG2318 Uncharacterized conser 91.9 0.66 1.4E-05 41.4 6.9 85 75-162 172-305 (650)
141 KOG4210 Nuclear localization s 90.8 0.14 3E-06 42.2 1.7 70 77-149 88-157 (285)
142 KOG4285 Mitotic phosphoprotein 90.7 1.9 4.1E-05 35.7 8.1 62 78-150 198-259 (350)
143 KOG2135 Proteins containing th 90.5 0.15 3.2E-06 44.4 1.7 73 77-164 372-445 (526)
144 PF03880 DbpA: DbpA RNA bindin 90.4 1.3 2.8E-05 28.7 5.8 59 87-162 11-74 (74)
145 PF11767 SET_assoc: Histone ly 88.7 2.2 4.9E-05 27.2 5.7 50 88-149 11-60 (66)
146 KOG2193 IGF-II mRNA-binding pr 86.3 0.027 5.9E-07 48.3 -5.4 76 76-162 79-154 (584)
147 KOG4410 5-formyltetrahydrofola 83.3 5 0.00011 33.1 6.5 49 77-133 330-378 (396)
148 KOG4454 RNA binding protein (R 82.1 0.58 1.2E-05 37.1 0.7 69 77-149 80-152 (267)
149 KOG4483 Uncharacterized conser 80.4 4.2 9.2E-05 35.0 5.3 55 77-141 391-446 (528)
150 KOG4676 Splicing factor, argin 77.6 0.45 9.7E-06 40.6 -1.2 66 77-150 151-216 (479)
151 PF03468 XS: XS domain; Inter 73.0 2.7 5.8E-05 29.9 1.9 49 79-133 10-67 (116)
152 KOG4019 Calcineurin-mediated s 72.8 2.7 5.9E-05 32.3 2.0 73 78-163 11-88 (193)
153 KOG4365 Uncharacterized conser 67.3 1.1 2.4E-05 38.9 -1.2 77 78-163 4-80 (572)
154 KOG2295 C2H2 Zn-finger protein 67.1 0.8 1.7E-05 40.7 -2.1 71 77-150 231-301 (648)
155 COG0724 RNA-binding proteins ( 67.0 10 0.00022 29.0 4.2 38 76-113 224-261 (306)
156 PF07292 NID: Nmi/IFP 35 domai 64.5 4.4 9.6E-05 27.4 1.5 22 77-98 52-73 (88)
157 COG5638 Uncharacterized conser 62.3 22 0.00048 30.9 5.6 85 75-162 144-295 (622)
158 KOG1295 Nonsense-mediated deca 61.8 11 0.00023 32.3 3.6 73 77-150 7-80 (376)
159 PF11411 DNA_ligase_IV: DNA li 58.7 5.7 0.00012 22.2 1.0 16 87-102 19-34 (36)
160 KOG4008 rRNA processing protei 58.2 5.9 0.00013 31.7 1.4 31 77-107 40-70 (261)
161 PF15513 DUF4651: Domain of un 52.2 36 0.00077 21.5 3.9 21 92-112 9-29 (62)
162 PF10567 Nab6_mRNP_bdg: RNA-re 45.9 40 0.00087 28.0 4.4 60 77-136 15-78 (309)
163 PF00403 HMA: Heavy-metal-asso 42.2 75 0.0016 18.9 5.2 45 79-132 1-45 (62)
164 PF04026 SpoVG: SpoVG; InterP 37.7 73 0.0016 21.2 4.0 26 103-131 2-27 (84)
165 PRK13259 regulatory protein Sp 37.3 66 0.0014 22.0 3.8 48 103-163 2-49 (94)
166 COG0030 KsgA Dimethyladenosine 35.6 43 0.00094 27.2 3.1 34 78-111 96-129 (259)
167 PF14893 PNMA: PNMA 34.9 24 0.00052 29.8 1.6 23 77-99 18-40 (331)
168 PF09707 Cas_Cas2CT1978: CRISP 31.9 95 0.0021 20.8 3.8 48 77-130 25-72 (86)
169 KOG2891 Surface glycoprotein [ 31.7 46 0.001 27.6 2.7 87 77-164 149-267 (445)
170 TIGR03636 L23_arch archaeal ri 31.4 1.4E+02 0.003 19.5 4.5 57 79-141 15-73 (77)
171 PRK14548 50S ribosomal protein 31.3 1.3E+02 0.0028 20.0 4.4 57 79-141 22-80 (84)
172 COG0002 ArgC Acetylglutamate s 29.4 79 0.0017 26.9 3.8 29 84-112 252-281 (349)
173 KOG3424 40S ribosomal protein 28.9 1.1E+02 0.0024 22.0 3.9 48 88-136 34-83 (132)
174 PHA01632 hypothetical protein 28.4 56 0.0012 20.2 2.0 20 81-100 20-39 (64)
175 PRK11634 ATP-dependent RNA hel 28.0 2.1E+02 0.0046 26.3 6.6 68 78-163 487-561 (629)
176 PRK11901 hypothetical protein; 26.6 1.1E+02 0.0025 25.7 4.2 52 88-144 253-306 (327)
177 COG0150 PurM Phosphoribosylami 26.2 14 0.00029 31.3 -1.3 47 92-145 276-322 (345)
178 PRK00274 ksgA 16S ribosomal RN 26.1 68 0.0015 25.8 2.8 22 79-100 107-128 (272)
179 PRK11230 glycolate oxidase sub 26.0 2.9E+02 0.0064 24.5 7.0 63 78-144 190-256 (499)
180 KOG1134 Uncharacterized conser 25.2 1.1E+02 0.0023 28.9 4.2 38 121-165 304-341 (728)
181 TIGR00755 ksgA dimethyladenosi 24.8 93 0.002 24.6 3.4 24 79-102 96-119 (253)
182 PRK11558 putative ssRNA endonu 24.2 1.1E+02 0.0024 21.0 3.2 50 77-132 27-76 (97)
183 PF15063 TC1: Thyroid cancer p 23.7 37 0.00079 22.3 0.7 28 77-104 25-52 (79)
184 PTZ00338 dimethyladenosine tra 23.5 76 0.0016 26.1 2.7 27 79-105 103-129 (294)
185 PF13046 DUF3906: Protein of u 23.5 1.2E+02 0.0026 19.2 2.9 25 89-113 30-54 (64)
186 COG3254 Uncharacterized conser 23.1 2.3E+02 0.0049 19.8 4.5 39 93-137 28-66 (105)
187 PRK01178 rps24e 30S ribosomal 23.1 2.2E+02 0.0048 19.5 4.5 48 88-136 30-79 (99)
188 COG5193 LHP1 La protein, small 22.7 45 0.00097 28.9 1.2 61 77-140 174-244 (438)
189 PF07237 DUF1428: Protein of u 22.4 2.7E+02 0.0059 19.3 4.9 50 94-143 25-86 (103)
190 smart00650 rADc Ribosomal RNA 22.2 1.2E+02 0.0026 22.2 3.4 23 78-100 78-100 (169)
191 PF00398 RrnaAD: Ribosomal RNA 22.2 57 0.0012 26.1 1.7 23 77-99 97-119 (262)
192 PF12829 Mhr1: Transcriptional 21.9 1.3E+02 0.0027 20.5 3.0 55 85-146 20-75 (91)
193 PTZ00071 40S ribosomal protein 21.7 2.4E+02 0.0051 20.6 4.6 48 88-136 35-85 (132)
194 COG2608 CopZ Copper chaperone 21.7 2.2E+02 0.0047 17.9 5.0 55 78-141 4-59 (71)
195 PF11823 DUF3343: Protein of u 21.3 1.2E+02 0.0027 19.1 2.8 24 124-147 3-26 (73)
196 cd00027 BRCT Breast Cancer Sup 21.1 1.1E+02 0.0024 17.6 2.6 28 78-105 2-29 (72)
197 PF03439 Spt5-NGN: Early trans 20.8 1E+02 0.0023 20.2 2.5 27 121-147 43-69 (84)
198 COG0445 GidA Flavin-dependent 20.4 1.7E+02 0.0036 26.8 4.3 36 77-112 301-336 (621)
199 CHL00123 rps6 ribosomal protei 20.3 1.8E+02 0.004 19.6 3.7 59 79-140 10-80 (97)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.85 E-value=1.9e-20 Score=138.85 Aligned_cols=82 Identities=18% Similarity=0.416 Sum_probs=76.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
+++|||+|||+++||++|+++|++||.|.+|+|+.++ .+++++|||||+|.+.++|++|++.||+..|.+ +.
T Consensus 34 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~---~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~G-----r~ 105 (144)
T PLN03134 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDR---ETGRSRGFGFVNFNDEGAATAAISEMDGKELNG-----RH 105 (144)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecC---CCCCcceEEEEEECCHHHHHHHHHHcCCCEECC-----EE
Confidence 6899999999999999999999999999999999987 678999999999999999999999999999976 58
Q ss_pred eEEEeecCCC
Q 030465 157 LRLQFSRNPG 166 (177)
Q Consensus 157 l~V~~a~~~~ 166 (177)
|+|+|++.+.
T Consensus 106 l~V~~a~~~~ 115 (144)
T PLN03134 106 IRVNPANDRP 115 (144)
T ss_pred EEEEeCCcCC
Confidence 9999997653
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.79 E-value=8.1e-19 Score=146.44 Aligned_cols=84 Identities=24% Similarity=0.387 Sum_probs=77.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
+.+|||+|||+++++++|+++|++||.|.+|+|+.+. .++.+||||||+|.+.++|.+|++.|||+.|.+ |.
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~---~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~g-----r~ 340 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDL---TTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGN-----RV 340 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcC---CCCCccceEEEEECCHHHHHHHHHHhCCCEECC-----eE
Confidence 4579999999999999999999999999999999987 678999999999999999999999999999966 58
Q ss_pred eEEEeecCCCCC
Q 030465 157 LRLQFSRNPGPR 168 (177)
Q Consensus 157 l~V~~a~~~~~r 168 (177)
|+|+|+.++..|
T Consensus 341 i~V~~~~~~~~~ 352 (352)
T TIGR01661 341 LQVSFKTNKAYR 352 (352)
T ss_pred EEEEEccCCCCC
Confidence 999999877654
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.77 E-value=9.8e-18 Score=140.33 Aligned_cols=81 Identities=28% Similarity=0.449 Sum_probs=75.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
..++|||+|||+++||++|+++|+.||.|++|+|+.+. .+++++|||||+|.++++|++||+.||+..|.+ +
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~---~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~g-----r 177 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDY---KTGYSFGYAFVDFGSEADSQRAIKNLNGITVRN-----K 177 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC---CCCccCcEEEEEEccHHHHHHHHHHcCCCccCC-----c
Confidence 47899999999999999999999999999999999887 678899999999999999999999999999976 4
Q ss_pred ceEEEeecC
Q 030465 156 FLRLQFSRN 164 (177)
Q Consensus 156 ~l~V~~a~~ 164 (177)
+|+|+|++.
T Consensus 178 ~i~V~~a~p 186 (346)
T TIGR01659 178 RLKVSYARP 186 (346)
T ss_pred eeeeecccc
Confidence 799999865
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.75 E-value=5.2e-18 Score=141.57 Aligned_cols=81 Identities=26% Similarity=0.470 Sum_probs=75.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++||++|+++|++||.|.+|+|+.++ .+++++|||||+|.+.++|++||+.|||..|.+ ++
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~---~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g-----~~ 74 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDK---VTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQN-----KT 74 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcC---CCCccceEEEEEECcHHHHHHHHhhcccEEECC-----ee
Confidence 6899999999999999999999999999999999987 678899999999999999999999999999976 47
Q ss_pred eEEEeecCC
Q 030465 157 LRLQFSRNP 165 (177)
Q Consensus 157 l~V~~a~~~ 165 (177)
|+|+|++..
T Consensus 75 i~v~~a~~~ 83 (352)
T TIGR01661 75 IKVSYARPS 83 (352)
T ss_pred EEEEeeccc
Confidence 999999754
No 5
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.72 E-value=3.4e-17 Score=137.13 Aligned_cols=83 Identities=24% Similarity=0.361 Sum_probs=76.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++||++|+++|++||.|+.|+|+.++ .+++++|||||+|.+.++|++||+.||+..+.+. .++
T Consensus 193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~---~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~---~~~ 266 (346)
T TIGR01659 193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDK---LTGTPRGVAFVRFNKREEAQEAISALNNVIPEGG---SQP 266 (346)
T ss_pred cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecC---CCCccceEEEEEECCHHHHHHHHHHhCCCccCCC---cee
Confidence 5689999999999999999999999999999999886 6789999999999999999999999999999763 357
Q ss_pred eEEEeecCC
Q 030465 157 LRLQFSRNP 165 (177)
Q Consensus 157 l~V~~a~~~ 165 (177)
|+|.|++..
T Consensus 267 l~V~~a~~~ 275 (346)
T TIGR01659 267 LTVRLAEEH 275 (346)
T ss_pred EEEEECCcc
Confidence 999999764
No 6
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=2.7e-17 Score=128.52 Aligned_cols=83 Identities=31% Similarity=0.488 Sum_probs=77.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCC
Q 030465 75 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 154 (177)
Q Consensus 75 ~~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~ 154 (177)
++.++|=|.||+.+++|++|++||.+||.|..+.|..++ .+|.+||||||+|.+.++|++||+.|||+-++.-
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK---~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~L---- 259 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDK---ETGLSKGFAFVTFESRDDAARAIADLNGYGYDNL---- 259 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEcc---ccCcccceEEEEEecHHHHHHHHHHccCcccceE----
Confidence 357999999999999999999999999999999999998 8999999999999999999999999999988654
Q ss_pred cceEEEeecCC
Q 030465 155 KFLRLQFSRNP 165 (177)
Q Consensus 155 r~l~V~~a~~~ 165 (177)
.|+|+|+++.
T Consensus 260 -ILrvEwskP~ 269 (270)
T KOG0122|consen 260 -ILRVEWSKPS 269 (270)
T ss_pred -EEEEEecCCC
Confidence 6999999764
No 7
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=2.8e-17 Score=117.23 Aligned_cols=79 Identities=23% Similarity=0.428 Sum_probs=71.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
++||||+||++.++|++|.+||+.+|.|+.|.+-.++- +-.+.|||||+|...++|+.|++.++++.|++ |+
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~---kktpCGFCFVeyy~~~dA~~AlryisgtrLdd-----r~ 107 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRF---KKTPCGFCFVEYYSRDDAEDALRYISGTRLDD-----RP 107 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHhccchheeEeccccC---CcCccceEEEEEecchhHHHHHHHhccCcccc-----cc
Confidence 79999999999999999999999999999998877773 34477999999999999999999999999987 48
Q ss_pred eEEEeec
Q 030465 157 LRLQFSR 163 (177)
Q Consensus 157 l~V~~a~ 163 (177)
|+|+|.-
T Consensus 108 ir~D~D~ 114 (153)
T KOG0121|consen 108 IRIDWDA 114 (153)
T ss_pred eeeeccc
Confidence 9999864
No 8
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.71 E-value=6.4e-17 Score=104.24 Aligned_cols=67 Identities=30% Similarity=0.527 Sum_probs=62.3
Q ss_pred EEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCC
Q 030465 80 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 150 (177)
Q Consensus 80 LfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~ 150 (177)
|||+|||+++|+++|+++|++||.|..+.+..+. .+..++||||+|.+.++|++|++.||++.+.+.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~----~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~ 67 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNS----SGKSKGYAFVEFESEEDAEKALEELNGKKINGR 67 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEET----TSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccc----cccccceEEEEEcCHHHHHHHHHHcCCCEECcc
Confidence 7999999999999999999999999999998863 577889999999999999999999999999763
No 9
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=1.2e-16 Score=119.49 Aligned_cols=80 Identities=28% Similarity=0.425 Sum_probs=70.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+||+..+++.||+.+|..||.|.+|-|... +.|||||||+|..+|+.|+..|+|..|.+. .
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn--------PPGfAFVEFed~RDA~DAvr~LDG~~~cG~-----r 76 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN--------PPGFAFVEFEDPRDAEDAVRYLDGKDICGS-----R 76 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec--------CCCceEEeccCcccHHHHHhhcCCccccCc-----e
Confidence 589999999999999999999999999998866554 346999999999999999999999999885 7
Q ss_pred eEEEeecCCCCCC
Q 030465 157 LRLQFSRNPGPRS 169 (177)
Q Consensus 157 l~V~~a~~~~~r~ 169 (177)
|+|+++......+
T Consensus 77 ~rVE~S~G~~r~~ 89 (195)
T KOG0107|consen 77 IRVELSTGRPRGS 89 (195)
T ss_pred EEEEeecCCcccc
Confidence 9999998765543
No 10
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=3.4e-16 Score=125.47 Aligned_cols=86 Identities=21% Similarity=0.340 Sum_probs=79.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCC
Q 030465 74 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 153 (177)
Q Consensus 74 ~~~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~ 153 (177)
.++-+||||+-|+.+++|+.|+..|+.||.|+.|+|+.++ .+|+++|||||+|+++.+...|.+..+|.+|++
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~---vTgkskGYAFIeye~erdm~~AYK~adG~~Idg---- 170 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDK---VTGKSKGYAFIEYEHERDMKAAYKDADGIKIDG---- 170 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeec---ccCCccceEEEEeccHHHHHHHHHhccCceecC----
Confidence 3568999999999999999999999999999999999998 899999999999999999999999999999977
Q ss_pred CcceEEEeecCCCC
Q 030465 154 SKFLRLQFSRNPGP 167 (177)
Q Consensus 154 ~r~l~V~~a~~~~~ 167 (177)
+.|-|++-+....
T Consensus 171 -rri~VDvERgRTv 183 (335)
T KOG0113|consen 171 -RRILVDVERGRTV 183 (335)
T ss_pred -cEEEEEecccccc
Confidence 4799998765533
No 11
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.65 E-value=8.8e-16 Score=135.79 Aligned_cols=83 Identities=16% Similarity=0.342 Sum_probs=76.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++++++|+++|+.||.|.+|+|..++ .+++++|||||+|++.++|.+|++.||++.|.++ .
T Consensus 204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~---~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr-----~ 275 (612)
T TIGR01645 204 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAP---TGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQ-----Y 275 (612)
T ss_pred cceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecC---CCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCe-----E
Confidence 5799999999999999999999999999999999987 5688999999999999999999999999999764 7
Q ss_pred eEEEeecCCCC
Q 030465 157 LRLQFSRNPGP 167 (177)
Q Consensus 157 l~V~~a~~~~~ 167 (177)
|+|.++..++.
T Consensus 276 LrV~kAi~pP~ 286 (612)
T TIGR01645 276 LRVGKCVTPPD 286 (612)
T ss_pred EEEEecCCCcc
Confidence 99999987543
No 12
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=6e-16 Score=116.87 Aligned_cols=78 Identities=33% Similarity=0.603 Sum_probs=69.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||.++.|.||++||.+||.|.+|.|.... + +..||||+|++..+|+.||..-+|+.+++. .
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~-----g-~ppfafVeFEd~RDAeDAiygRdGYdydg~-----r 74 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP-----G-PPPFAFVEFEDPRDAEDAIYGRDGYDYDGC-----R 74 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC-----C-CCCeeEEEecCccchhhhhhcccccccCcc-----e
Confidence 6899999999999999999999999999999886543 1 335999999999999999999999999874 7
Q ss_pred eEEEeecCC
Q 030465 157 LRLQFSRNP 165 (177)
Q Consensus 157 l~V~~a~~~ 165 (177)
|+|+|++.-
T Consensus 75 LRVEfprgg 83 (241)
T KOG0105|consen 75 LRVEFPRGG 83 (241)
T ss_pred EEEEeccCC
Confidence 999998754
No 13
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=1.3e-15 Score=123.52 Aligned_cols=79 Identities=23% Similarity=0.347 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCC
Q 030465 75 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 154 (177)
Q Consensus 75 ~~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~ 154 (177)
+..+.|||+|||+...|.||+.+|++||.|.+|+|+.++ .-+|||+||+|++.++|++|.+.|||..+.+
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE-----RGSKGFGFVTmen~~dadRARa~LHgt~VEG----- 163 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE-----RGSKGFGFVTMENPADADRARAELHGTVVEG----- 163 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc-----CCCCccceEEecChhhHHHHHHHhhcceeec-----
Confidence 345889999999999999999999999999999999986 3378999999999999999999999999955
Q ss_pred cceEEEeec
Q 030465 155 KFLRLQFSR 163 (177)
Q Consensus 155 r~l~V~~a~ 163 (177)
|+|.|..|.
T Consensus 164 RkIEVn~AT 172 (376)
T KOG0125|consen 164 RKIEVNNAT 172 (376)
T ss_pred eEEEEeccc
Confidence 689998875
No 14
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=2.1e-15 Score=126.46 Aligned_cols=81 Identities=25% Similarity=0.372 Sum_probs=75.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.+.|||+.||.|+.|++|..||++.|.|.++||+.++ .+|.+||||||+|.+.+.|+.||+.||+++|.. ++.
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~---~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~----GK~ 155 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDP---FSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRP----GKL 155 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccceeeEEEeecc---cCCCCcceEEEEeecHHHHHHHHHHhhCccccC----CCE
Confidence 8999999999999999999999999999999999997 689999999999999999999999999999974 467
Q ss_pred eEEEeecC
Q 030465 157 LRLQFSRN 164 (177)
Q Consensus 157 l~V~~a~~ 164 (177)
|.|+.+..
T Consensus 156 igvc~Sva 163 (506)
T KOG0117|consen 156 LGVCVSVA 163 (506)
T ss_pred eEEEEeee
Confidence 99987753
No 15
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.63 E-value=2e-15 Score=120.48 Aligned_cols=76 Identities=20% Similarity=0.316 Sum_probs=68.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+.+||++|+++|+.||.|.+|+|+.++ .++|||||+|++.++|+.|+ .|||..|.++ .
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~------~~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr-----~ 71 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN------ERSQIAYVTFKDPQGAETAL-LLSGATIVDQ-----S 71 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC------CCCCEEEEEeCcHHHHHHHH-HhcCCeeCCc-----e
Confidence 5899999999999999999999999999999998775 14579999999999999999 5999999774 7
Q ss_pred eEEEeecC
Q 030465 157 LRLQFSRN 164 (177)
Q Consensus 157 l~V~~a~~ 164 (177)
|+|+++..
T Consensus 72 V~Vt~a~~ 79 (260)
T PLN03120 72 VTITPAED 79 (260)
T ss_pred EEEEeccC
Confidence 99999864
No 16
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.62 E-value=2.2e-15 Score=132.90 Aligned_cols=79 Identities=23% Similarity=0.342 Sum_probs=70.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
..++|||+|||++++|++|+++|++||.|.+|+|+.+. +++++|||||+|.+.++|++||+.||++.|... +
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~----sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~G----r 128 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDF----SGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPG----R 128 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECC----CCCccceEEEEeCCHHHHHHHHHHcCCCeecCC----c
Confidence 36899999999999999999999999999999999884 688999999999999999999999999998632 3
Q ss_pred ceEEEee
Q 030465 156 FLRLQFS 162 (177)
Q Consensus 156 ~l~V~~a 162 (177)
.|.|+++
T Consensus 129 ~l~V~~S 135 (578)
T TIGR01648 129 LLGVCIS 135 (578)
T ss_pred ccccccc
Confidence 5666654
No 17
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.62 E-value=2e-15 Score=133.56 Aligned_cols=80 Identities=20% Similarity=0.371 Sum_probs=74.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++++++|+++|++||.|.+|+|+.++ .+++++|||||+|.+.++|+.|++.|||..|.+ |.
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~---~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~G-----R~ 178 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDP---ATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGG-----RN 178 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecC---CCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEec-----ce
Confidence 6899999999999999999999999999999999987 678999999999999999999999999999976 47
Q ss_pred eEEEeecC
Q 030465 157 LRLQFSRN 164 (177)
Q Consensus 157 l~V~~a~~ 164 (177)
|+|.+..+
T Consensus 179 IkV~rp~~ 186 (612)
T TIGR01645 179 IKVGRPSN 186 (612)
T ss_pred eeeccccc
Confidence 99987543
No 18
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.61 E-value=4.3e-15 Score=128.26 Aligned_cols=80 Identities=24% Similarity=0.463 Sum_probs=74.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|+++|++||.|..|+|+.+. .+|+++|||||+|.+.++|.+|++.|||+.|.+ ++
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~---~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g-----~~ 257 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDP---ETGRSKGFGFIQFHDAEEAKEALEVMNGFELAG-----RP 257 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC---CCCccceEEEEEECCHHHHHHHHHhcCCcEECC-----EE
Confidence 6899999999999999999999999999999999887 567899999999999999999999999999966 58
Q ss_pred eEEEeecC
Q 030465 157 LRLQFSRN 164 (177)
Q Consensus 157 l~V~~a~~ 164 (177)
|+|.|+..
T Consensus 258 i~v~~a~~ 265 (457)
T TIGR01622 258 IKVGYAQD 265 (457)
T ss_pred EEEEEccC
Confidence 99999763
No 19
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.61 E-value=6.6e-15 Score=95.43 Aligned_cols=67 Identities=28% Similarity=0.526 Sum_probs=60.3
Q ss_pred EEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCC
Q 030465 80 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 150 (177)
Q Consensus 80 LfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~ 150 (177)
|||+|||+++++++|.++|+.||.|..+++..++ . +..+++|||+|.+.++|.+|++.+++..+.++
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~---~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~ 67 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNK---D-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGR 67 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEEST---T-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeee---c-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCE
Confidence 7999999999999999999999999999999876 3 77889999999999999999999999999763
No 20
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.60 E-value=6.6e-15 Score=128.59 Aligned_cols=81 Identities=19% Similarity=0.349 Sum_probs=74.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
..++|||+|||+.+|+++|+++|+.||.|..+.|+.+. .+|.++|||||+|.+.+.|+.|++.|||..|.+.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~---~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~----- 365 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDI---ATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDN----- 365 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC---CCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCe-----
Confidence 36899999999999999999999999999999999876 5788999999999999999999999999999764
Q ss_pred ceEEEeecC
Q 030465 156 FLRLQFSRN 164 (177)
Q Consensus 156 ~l~V~~a~~ 164 (177)
.|+|+++..
T Consensus 366 ~l~v~~a~~ 374 (509)
T TIGR01642 366 KLHVQRACV 374 (509)
T ss_pred EEEEEECcc
Confidence 799999854
No 21
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.60 E-value=3.9e-15 Score=131.79 Aligned_cols=78 Identities=31% Similarity=0.459 Sum_probs=72.7
Q ss_pred eEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcceE
Q 030465 79 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLR 158 (177)
Q Consensus 79 tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~l~ 158 (177)
+|||+|||+++||++|+++|++||.|.+|+|+.+. .+++++|||||+|.+.++|++|++.||+..|.+ +.|+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~---~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~g-----k~i~ 73 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDS---VTRRSLGYGYVNFQNPADAERALETMNFKRLGG-----KPIR 73 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC---CCCCcceEEEEEECCHHHHHHHHHHhCCCEECC-----eeEE
Confidence 79999999999999999999999999999999987 668899999999999999999999999999976 4799
Q ss_pred EEeecC
Q 030465 159 LQFSRN 164 (177)
Q Consensus 159 V~~a~~ 164 (177)
|.|+..
T Consensus 74 i~~s~~ 79 (562)
T TIGR01628 74 IMWSQR 79 (562)
T ss_pred eecccc
Confidence 999853
No 22
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=8.4e-15 Score=115.85 Aligned_cols=81 Identities=26% Similarity=0.466 Sum_probs=75.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.+.|.|..||..+|+|||+.||...|+|++|++++|+ .+|.+-||+||.|.++++|++|+..|||..|.. ++
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDK---itGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~-----KT 112 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDK---ITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQN-----KT 112 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeecc---ccccccccceeeecChHHHHHHHhhhcceeecc-----ce
Confidence 4569999999999999999999999999999999998 789999999999999999999999999999955 48
Q ss_pred eEEEeecCC
Q 030465 157 LRLQFSRNP 165 (177)
Q Consensus 157 l~V~~a~~~ 165 (177)
|+|+||++.
T Consensus 113 IKVSyARPS 121 (360)
T KOG0145|consen 113 IKVSYARPS 121 (360)
T ss_pred EEEEeccCC
Confidence 999999764
No 23
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.59 E-value=5.2e-15 Score=131.00 Aligned_cols=81 Identities=22% Similarity=0.349 Sum_probs=74.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
..+|||+||++++|+++|+++|++||.|.+|+++.+. ++.++|||||+|.+.++|++|++.||+..|.+ ++
T Consensus 285 ~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~----~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~g-----k~ 355 (562)
T TIGR01628 285 GVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDE----KGVSRGFGFVCFSNPEEANRAVTEMHGRMLGG-----KP 355 (562)
T ss_pred CCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECC----CCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCC-----ce
Confidence 6789999999999999999999999999999999884 68899999999999999999999999999966 58
Q ss_pred eEEEeecCCC
Q 030465 157 LRLQFSRNPG 166 (177)
Q Consensus 157 l~V~~a~~~~ 166 (177)
|+|.||..+.
T Consensus 356 l~V~~a~~k~ 365 (562)
T TIGR01628 356 LYVALAQRKE 365 (562)
T ss_pred eEEEeccCcH
Confidence 9999997653
No 24
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.59 E-value=3.6e-15 Score=114.30 Aligned_cols=80 Identities=23% Similarity=0.328 Sum_probs=75.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
..+|-|-||.+-+|.++|+.+|++||.|-+|.|..++ .+.+++|||||-|.+..+|+.|+++|+|.+|++. .
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr---~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgR-----e 84 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDR---YTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGR-----E 84 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceeccccc---ccccccceeEEEeeecchHHHHHHhhcceeeccc-----e
Confidence 5789999999999999999999999999999999998 7889999999999999999999999999999875 6
Q ss_pred eEEEeecC
Q 030465 157 LRLQFSRN 164 (177)
Q Consensus 157 l~V~~a~~ 164 (177)
|+|++|+.
T Consensus 85 lrVq~ary 92 (256)
T KOG4207|consen 85 LRVQMARY 92 (256)
T ss_pred eeehhhhc
Confidence 99999875
No 25
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=2.4e-15 Score=117.12 Aligned_cols=77 Identities=18% Similarity=0.271 Sum_probs=65.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
-++|||++|+|+++.++|++.|++||+|++..|+.|+ .+|++|||+||+|.|.+.|++|++.-| -.|++ |+
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~---~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdG-----R~ 82 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDK---NTGRSKGYGFVTFRDAEAATRACKDPN-PIIDG-----RK 82 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEecc---CCccccceeeEEeecHHHHHHHhcCCC-Ccccc-----cc
Confidence 4689999999999999999999999999999999998 889999999999999999999985433 34444 45
Q ss_pred eEEEee
Q 030465 157 LRLQFS 162 (177)
Q Consensus 157 l~V~~a 162 (177)
-.+.+|
T Consensus 83 aNcnlA 88 (247)
T KOG0149|consen 83 ANCNLA 88 (247)
T ss_pred cccchh
Confidence 555554
No 26
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.57 E-value=5.3e-16 Score=116.72 Aligned_cols=81 Identities=20% Similarity=0.434 Sum_probs=75.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
++.-|||+|||+++||.||--+|++||.|..|.|++++ .||+++||||+.|+|..+..-|+..|||..|.+ |
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk---~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~g-----R 105 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDK---KTGKSKGFAFLCYEDQRSTILAVDNLNGIKILG-----R 105 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecC---CCCcccceEEEEecCccceEEEEeccCCceecc-----e
Confidence 36889999999999999999999999999999999998 899999999999999999999999999999977 6
Q ss_pred ceEEEeecC
Q 030465 156 FLRLQFSRN 164 (177)
Q Consensus 156 ~l~V~~a~~ 164 (177)
.|+|+...+
T Consensus 106 tirVDHv~~ 114 (219)
T KOG0126|consen 106 TIRVDHVSN 114 (219)
T ss_pred eEEeeeccc
Confidence 899986543
No 27
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.57 E-value=2e-14 Score=124.14 Aligned_cols=80 Identities=18% Similarity=0.262 Sum_probs=72.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.++ .+++++|||||+|.+.++|++||. |+|..|.+ +
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~---~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g-----~ 158 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDR---NSRRSKGVAYVEFYDVESVIKALA-LTGQMLLG-----R 158 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecC---CCCCcceEEEEEECCHHHHHHHHH-hCCCEECC-----e
Confidence 47899999999999999999999999999999999887 678899999999999999999995 99999976 4
Q ss_pred ceEEEeecC
Q 030465 156 FLRLQFSRN 164 (177)
Q Consensus 156 ~l~V~~a~~ 164 (177)
+|.|++++.
T Consensus 159 ~i~v~~~~~ 167 (457)
T TIGR01622 159 PIIVQSSQA 167 (457)
T ss_pred eeEEeecch
Confidence 799988754
No 28
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.56 E-value=7.2e-15 Score=125.51 Aligned_cols=82 Identities=23% Similarity=0.432 Sum_probs=77.6
Q ss_pred CeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcce
Q 030465 78 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 157 (177)
Q Consensus 78 ~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~l 157 (177)
+.|||+|||++++|++|.++|+..|.|.+++++.|+ .+|+++||+|++|.+.++|+.|++.|||.++.+ |+|
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~---~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~g-----r~l 90 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDR---ETGKPKGFGFCEFTDEETAERAIRNLNGAEFNG-----RKL 90 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccc---cCCCcCceeeEecCchhhHHHHHHhcCCcccCC-----ceE
Confidence 889999999999999999999999999999999998 899999999999999999999999999999955 689
Q ss_pred EEEeecCCCC
Q 030465 158 RLQFSRNPGP 167 (177)
Q Consensus 158 ~V~~a~~~~~ 167 (177)
+|.|+.+...
T Consensus 91 ~v~~~~~~~~ 100 (435)
T KOG0108|consen 91 RVNYASNRKN 100 (435)
T ss_pred Eeecccccch
Confidence 9999987644
No 29
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=3.7e-14 Score=97.84 Aligned_cols=82 Identities=26% Similarity=0.489 Sum_probs=72.0
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCC
Q 030465 70 LPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 149 (177)
Q Consensus 70 ~~~p~~~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~ 149 (177)
..+|+.-++.|||.|||+++|.++..+||.+||.|..|+|-..+ ..+|-|||.|++..+|.+|++.|+|+.+..
T Consensus 11 ~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k------~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ 84 (124)
T KOG0114|consen 11 IRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK------ETRGTAFVVYEDIFDAKKACDHLSGYNVDN 84 (124)
T ss_pred CCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc------CcCceEEEEehHhhhHHHHHHHhcccccCC
Confidence 45566668999999999999999999999999999999997654 245799999999999999999999999966
Q ss_pred CCCCCcceEEEee
Q 030465 150 DDPDSKFLRLQFS 162 (177)
Q Consensus 150 ~~~~~r~l~V~~a 162 (177)
+.|.|-|-
T Consensus 85 -----ryl~vlyy 92 (124)
T KOG0114|consen 85 -----RYLVVLYY 92 (124)
T ss_pred -----ceEEEEec
Confidence 57888775
No 30
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=9.3e-15 Score=115.97 Aligned_cols=86 Identities=16% Similarity=0.305 Sum_probs=78.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.-.+||+.|..+++.++|++.|.+||+|.+++|++|. .++|+|||+||.|.+.++|+.||..|||..|.. |.
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~---~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~-----R~ 133 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDM---NTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGR-----RT 133 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecc---cCCcccceeEEeccchHHHHHHHHHhCCeeecc-----ce
Confidence 4569999999999999999999999999999999998 789999999999999999999999999999954 78
Q ss_pred eEEEeecCCCCCCC
Q 030465 157 LRLQFSRNPGPRSV 170 (177)
Q Consensus 157 l~V~~a~~~~~r~~ 170 (177)
|+..||.-++.+.+
T Consensus 134 IRTNWATRKp~e~n 147 (321)
T KOG0148|consen 134 IRTNWATRKPSEMN 147 (321)
T ss_pred eeccccccCccccC
Confidence 99999976654443
No 31
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.55 E-value=3.5e-14 Score=125.29 Aligned_cols=75 Identities=21% Similarity=0.349 Sum_probs=68.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCC--CCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCC
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPF--VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 154 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~--G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~ 154 (177)
.++|||+||++++||++|+++|++| |.|++|+++. +||||+|++.++|++|++.||+..|.+
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-----------gfAFVeF~s~e~A~kAi~~lnG~~i~G----- 296 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-----------DYAFVHFEDREDAVKAMDELNGKELEG----- 296 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-----------CeEEEEeCCHHHHHHHHHHhCCCEECC-----
Confidence 5789999999999999999999999 9999987753 399999999999999999999999976
Q ss_pred cceEEEeecCCCC
Q 030465 155 KFLRLQFSRNPGP 167 (177)
Q Consensus 155 r~l~V~~a~~~~~ 167 (177)
+.|+|+|++++..
T Consensus 297 r~I~V~~Akp~~~ 309 (578)
T TIGR01648 297 SEIEVTLAKPVDK 309 (578)
T ss_pred EEEEEEEccCCCc
Confidence 4899999987644
No 32
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.55 E-value=3e-14 Score=112.30 Aligned_cols=75 Identities=17% Similarity=0.224 Sum_probs=66.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
..||||+||++.+||++|+++|+.||.|.+|+|+.+. +.++||||+|++++.|+.|+ .|+|..|.++ +
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~------et~gfAfVtF~d~~aaetAl-lLnGa~l~d~-----~ 72 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG------EYACTAYVTFKDAYALETAV-LLSGATIVDQ-----R 72 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC------CcceEEEEEECCHHHHHHHH-hcCCCeeCCc-----e
Confidence 6899999999999999999999999999999998874 34479999999999999999 8999999885 6
Q ss_pred eEEEeec
Q 030465 157 LRLQFSR 163 (177)
Q Consensus 157 l~V~~a~ 163 (177)
|.|.-..
T Consensus 73 I~It~~~ 79 (243)
T PLN03121 73 VCITRWG 79 (243)
T ss_pred EEEEeCc
Confidence 7877543
No 33
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=3e-14 Score=119.17 Aligned_cols=87 Identities=17% Similarity=0.364 Sum_probs=76.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.-+|||+.||..++|+||++||++||.|.+|.|++|+ .++.++|||||.|.+.++|.+|+.+||+...... ...+
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk---~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG--~~~p 108 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDK---STGQSKGCCFVKYYTRKEADEAINALHNQKTLPG--MHHP 108 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeeccc---ccCcccceEEEEeccHHHHHHHHHHhhcccccCC--CCcc
Confidence 5689999999999999999999999999999999998 7789999999999999999999999998765443 2247
Q ss_pred eEEEeecCCCCC
Q 030465 157 LRLQFSRNPGPR 168 (177)
Q Consensus 157 l~V~~a~~~~~r 168 (177)
|.|.||....+|
T Consensus 109 vqvk~Ad~E~er 120 (510)
T KOG0144|consen 109 VQVKYADGERER 120 (510)
T ss_pred eeecccchhhhc
Confidence 999999765444
No 34
>PLN03213 repressor of silencing 3; Provisional
Probab=99.54 E-value=2.2e-14 Score=121.96 Aligned_cols=76 Identities=22% Similarity=0.355 Sum_probs=68.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCH--HHHHHHHHHhCCCeeCCCCCCC
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENP--ACAATALSALQGYRMDEDDPDS 154 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~--~~A~~Ai~~l~g~~l~~~~~~~ 154 (177)
..+||||||++++|+++|+.+|+.||.|.+|.|++. +| ||||||+|.+. .++.+||+.|||..+.+
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-----TG--RGFAFVEMssdddaEeeKAISaLNGAEWKG----- 77 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-----KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKG----- 77 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-----cC--CceEEEEecCCcHHHHHHHHHHhcCCeecC-----
Confidence 578999999999999999999999999999999833 45 79999999987 78999999999999977
Q ss_pred cceEEEeecC
Q 030465 155 KFLRLQFSRN 164 (177)
Q Consensus 155 r~l~V~~a~~ 164 (177)
|.|+|+-|+.
T Consensus 78 R~LKVNKAKP 87 (759)
T PLN03213 78 GRLRLEKAKE 87 (759)
T ss_pred ceeEEeeccH
Confidence 5799998864
No 35
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=1.7e-14 Score=103.93 Aligned_cols=81 Identities=19% Similarity=0.309 Sum_probs=75.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.-.|||.++..++||++|.+.|..||.|+.+.|..++ ++|..||||+|+|++.+.|++|+..+||..|.++ .
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDR---RtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q-----~ 143 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDR---RTGYVKGYALVEYETLKEAQAAIDALNGAELLGQ-----N 143 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeecccc---ccccccceeeeehHhHHHHHHHHHhccchhhhCC-----c
Confidence 5689999999999999999999999999999999998 8999999999999999999999999999999997 5
Q ss_pred eEEEeecCC
Q 030465 157 LRLQFSRNP 165 (177)
Q Consensus 157 l~V~~a~~~ 165 (177)
|.|+|+=.+
T Consensus 144 v~VDw~Fv~ 152 (170)
T KOG0130|consen 144 VSVDWCFVK 152 (170)
T ss_pred eeEEEEEec
Confidence 889886444
No 36
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.54 E-value=3.8e-14 Score=123.60 Aligned_cols=77 Identities=21% Similarity=0.302 Sum_probs=69.7
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCC
Q 030465 76 ASSTLYVEGLPA-DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 154 (177)
Q Consensus 76 ~~~tLfV~nLp~-~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~ 154 (177)
++++|||+|||+ .+|+++|++||++||.|.+|+|+.++ +|||||+|.+.++|+.|++.||+..|.++
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~--------~g~afV~f~~~~~A~~Ai~~lng~~l~g~---- 341 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK--------KETALIEMADPYQAQLALTHLNGVKLFGK---- 341 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC--------CCEEEEEECCHHHHHHHHHHhCCCEECCc----
Confidence 378999999998 69999999999999999999998763 36999999999999999999999999774
Q ss_pred cceEEEeecCC
Q 030465 155 KFLRLQFSRNP 165 (177)
Q Consensus 155 r~l~V~~a~~~ 165 (177)
+|+|++++..
T Consensus 342 -~l~v~~s~~~ 351 (481)
T TIGR01649 342 -PLRVCPSKQQ 351 (481)
T ss_pred -eEEEEEcccc
Confidence 7999998653
No 37
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=7e-15 Score=113.79 Aligned_cols=85 Identities=22% Similarity=0.383 Sum_probs=78.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCC
Q 030465 75 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 154 (177)
Q Consensus 75 ~~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~ 154 (177)
...+||||+.|..++||.-|...|-+||.|.+|.+..+. .++++|||+||+|+..++|.+||..||+.+|.+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDy---esqkHRgFgFVefe~aEDAaaAiDNMnesEL~G----- 79 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDY---ESQKHRGFGFVEFEEAEDAAAAIDNMNESELFG----- 79 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccch---hcccccceeEEEeeccchhHHHhhcCchhhhcc-----
Confidence 347899999999999999999999999999999999887 778999999999999999999999999999987
Q ss_pred cceEEEeecCCCC
Q 030465 155 KFLRLQFSRNPGP 167 (177)
Q Consensus 155 r~l~V~~a~~~~~ 167 (177)
|.|+|.||++..-
T Consensus 80 rtirVN~AkP~ki 92 (298)
T KOG0111|consen 80 RTIRVNLAKPEKI 92 (298)
T ss_pred eeEEEeecCCccc
Confidence 5899999987643
No 38
>smart00362 RRM_2 RNA recognition motif.
Probab=99.53 E-value=6.4e-14 Score=89.24 Aligned_cols=71 Identities=31% Similarity=0.523 Sum_probs=63.4
Q ss_pred eEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcceE
Q 030465 79 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLR 158 (177)
Q Consensus 79 tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~l~ 158 (177)
+|||.|||.++++++|+++|++||.+..+++..+. +.++++|||+|.+.+.|+.|++.+++..+.+. .|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~-----~i~ 70 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-----GKSKGFAFVEFESEEDAEKAIEALNGTKLGGR-----PLR 70 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-----CCCCceEEEEeCCHHHHHHHHHHhCCcEECCE-----EEe
Confidence 58999999999999999999999999999888764 55778999999999999999999999999653 566
Q ss_pred E
Q 030465 159 L 159 (177)
Q Consensus 159 V 159 (177)
|
T Consensus 71 v 71 (72)
T smart00362 71 V 71 (72)
T ss_pred e
Confidence 5
No 39
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=2.3e-14 Score=120.19 Aligned_cols=77 Identities=19% Similarity=0.342 Sum_probs=70.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.+.|||.||+.++||+.|+.+|++||.|..|+.+.| ||||+|.+.++|.+|++.+||++|+++ .
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-----------YaFVHf~eR~davkAm~~~ngkeldG~-----~ 322 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-----------YAFVHFAEREDAVKAMKETNGKELDGS-----P 322 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-----------eeEEeecchHHHHHHHHHhcCceecCc-----e
Confidence 678999999999999999999999999999987755 999999999999999999999999886 7
Q ss_pred eEEEeecCCCCCC
Q 030465 157 LRLQFSRNPGPRS 169 (177)
Q Consensus 157 l~V~~a~~~~~r~ 169 (177)
|.|.+||++.++.
T Consensus 323 iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 323 IEVTLAKPVDKKK 335 (506)
T ss_pred EEEEecCChhhhc
Confidence 9999999875443
No 40
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.53 E-value=5.2e-14 Score=110.72 Aligned_cols=79 Identities=33% Similarity=0.544 Sum_probs=74.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|.++|.+||.|..+++..++ .+++++|||||+|.+.++|..|++.+++..|.+ ++
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~---~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~-----~~ 186 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDR---ETGKSRGFAFVEFESEESAEKAIEELNGKELEG-----RP 186 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeecc---ccCccCceEEEEecCHHHHHHHHHHcCCCeECC-----ce
Confidence 5999999999999999999999999999999999886 678999999999999999999999999999976 58
Q ss_pred eEEEeec
Q 030465 157 LRLQFSR 163 (177)
Q Consensus 157 l~V~~a~ 163 (177)
|+|+++.
T Consensus 187 ~~v~~~~ 193 (306)
T COG0724 187 LRVQKAQ 193 (306)
T ss_pred eEeeccc
Confidence 9999965
No 41
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.53 E-value=4.6e-14 Score=123.09 Aligned_cols=75 Identities=17% Similarity=0.244 Sum_probs=67.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHh--CCCeeCCCCCCC
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSAL--QGYRMDEDDPDS 154 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l--~g~~l~~~~~~~ 154 (177)
+++|||+|||+++||++|+++|++||.|.+|+++.++ +||||+|++.++|++|++.| ++..|.+
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k---------~~afVef~~~e~A~~Ai~~~~~~~~~l~g----- 67 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGK---------RQALVEFEDEESAKACVNFATSVPIYIRG----- 67 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCC---------CEEEEEeCchHHHHHHHHHhhcCCceEcC-----
Confidence 7899999999999999999999999999999998643 59999999999999999875 6778865
Q ss_pred cceEEEeecCC
Q 030465 155 KFLRLQFSRNP 165 (177)
Q Consensus 155 r~l~V~~a~~~ 165 (177)
++|+|+|+..+
T Consensus 68 ~~l~v~~s~~~ 78 (481)
T TIGR01649 68 QPAFFNYSTSQ 78 (481)
T ss_pred eEEEEEecCCc
Confidence 58999999654
No 42
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=4.9e-14 Score=111.91 Aligned_cols=75 Identities=23% Similarity=0.427 Sum_probs=70.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
+++|||+||+.-+||++|++.|++||.|.+||+..++ ||+||.|++.+.|.+||..+|+.++.++ .
T Consensus 164 NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q---------GYaFVrF~tkEaAahAIv~mNntei~G~-----~ 229 (321)
T KOG0148|consen 164 NTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ---------GYAFVRFETKEAAAHAIVQMNNTEIGGQ-----L 229 (321)
T ss_pred CceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc---------ceEEEEecchhhHHHHHHHhcCceeCce-----E
Confidence 8999999999999999999999999999999999886 6999999999999999999999999876 7
Q ss_pred eEEEeecCC
Q 030465 157 LRLQFSRNP 165 (177)
Q Consensus 157 l~V~~a~~~ 165 (177)
+++.|-|..
T Consensus 230 VkCsWGKe~ 238 (321)
T KOG0148|consen 230 VRCSWGKEG 238 (321)
T ss_pred EEEeccccC
Confidence 899998753
No 43
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=1.4e-14 Score=121.10 Aligned_cols=87 Identities=25% Similarity=0.330 Sum_probs=77.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+-|+..+||+|++++|++||.|++|.|+++. .+.+||||||.|...+.|..||+.||+..-... -.-+
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~----~~~sRGcaFV~fstke~A~~Aika~ng~~tmeG--cs~P 197 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP----DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEG--CSQP 197 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheecc----cccccceeEEEEehHHHHHHHHHhhccceeecc--CCCc
Confidence 6899999999999999999999999999999999985 688999999999999999999999999776554 2348
Q ss_pred eEEEeecCCCCCC
Q 030465 157 LRLQFSRNPGPRS 169 (177)
Q Consensus 157 l~V~~a~~~~~r~ 169 (177)
|.|.||..+..+.
T Consensus 198 LVVkFADtqkdk~ 210 (510)
T KOG0144|consen 198 LVVKFADTQKDKD 210 (510)
T ss_pred eEEEecccCCCch
Confidence 9999998775554
No 44
>smart00360 RRM RNA recognition motif.
Probab=99.50 E-value=1.5e-13 Score=87.11 Aligned_cols=70 Identities=36% Similarity=0.525 Sum_probs=62.6
Q ss_pred EcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcceEE
Q 030465 82 VEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRL 159 (177)
Q Consensus 82 V~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~l~V 159 (177)
|+|||.++++++|+++|++||.|..+.+..++ .+++++++|||+|.+.++|..|++.|++..+.++ .|+|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~---~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~-----~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDK---DTGKSKGFAFVEFESEEDAEKALEALNGKELDGR-----PLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCC---CCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCc-----EEEe
Confidence 68999999999999999999999999998775 4577889999999999999999999999999663 5665
No 45
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.48 E-value=3.8e-14 Score=113.48 Aligned_cols=72 Identities=24% Similarity=0.463 Sum_probs=67.7
Q ss_pred CeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcce
Q 030465 78 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 157 (177)
Q Consensus 78 ~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~l 157 (177)
.+|||+|||.++++.+|+.||++||+|.+|.|+.+ |+||+.++...|+.||..||++.|++. -|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-----------YgFVHiEdktaaedairNLhgYtLhg~-----nI 66 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-----------YGFVHIEDKTAAEDAIRNLHGYTLHGV-----NI 66 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-----------cceEEeecccccHHHHhhcccceecce-----EE
Confidence 57999999999999999999999999999999876 899999999999999999999999885 59
Q ss_pred EEEeecCC
Q 030465 158 RLQFSRNP 165 (177)
Q Consensus 158 ~V~~a~~~ 165 (177)
+|+-+|++
T Consensus 67 nVeaSksK 74 (346)
T KOG0109|consen 67 NVEASKSK 74 (346)
T ss_pred EEEecccc
Confidence 99988877
No 46
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=6.9e-14 Score=114.70 Aligned_cols=81 Identities=22% Similarity=0.411 Sum_probs=76.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.+.|||..|.+-+|+++|+.+|+.||.|.+|.++.++ .+|.+-.||||+|++.+++++|.-.|++..|++ |+
T Consensus 239 eNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~---ktgdsLqyaFiEFen~escE~AyFKMdNvLIDD-----rR 310 (479)
T KOG0415|consen 239 ENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDR---KTGDSLQYAFIEFENKESCEQAYFKMDNVLIDD-----RR 310 (479)
T ss_pred cceEEEEecCCcccccchhhHHhhcccceeeeEEecc---cccchhheeeeeecchhhHHHHHhhhcceeecc-----ce
Confidence 6999999999999999999999999999999999998 789999999999999999999999999999988 48
Q ss_pred eEEEeecCC
Q 030465 157 LRLQFSRNP 165 (177)
Q Consensus 157 l~V~~a~~~ 165 (177)
|+|.|+.+.
T Consensus 311 IHVDFSQSV 319 (479)
T KOG0415|consen 311 IHVDFSQSV 319 (479)
T ss_pred EEeehhhhh
Confidence 999998764
No 47
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.46 E-value=1.2e-13 Score=104.08 Aligned_cols=82 Identities=15% Similarity=0.156 Sum_probs=75.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCC
Q 030465 74 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 153 (177)
Q Consensus 74 ~~~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~ 153 (177)
.+...||||+||+..++++.|.+||-+.|.|..+++..++ .+...+|||||+|.++++|+-|++.||...|.+
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDr---v~~~~qGygF~Ef~~eedadYAikiln~VkLYg---- 78 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDR---VTQKHQGYGFAEFRTEEDADYAIKILNMVKLYG---- 78 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhh---hcccccceeEEEEechhhhHHHHHHHHHHHhcC----
Confidence 4457899999999999999999999999999999999988 667789999999999999999999999888876
Q ss_pred CcceEEEeec
Q 030465 154 SKFLRLQFSR 163 (177)
Q Consensus 154 ~r~l~V~~a~ 163 (177)
|+|+|..+.
T Consensus 79 -rpIrv~kas 87 (203)
T KOG0131|consen 79 -RPIRVNKAS 87 (203)
T ss_pred -ceeEEEecc
Confidence 589999875
No 48
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.45 E-value=1e-12 Score=84.05 Aligned_cols=74 Identities=34% Similarity=0.556 Sum_probs=65.3
Q ss_pred eEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcceE
Q 030465 79 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLR 158 (177)
Q Consensus 79 tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~l~ 158 (177)
+|||+|||+++++++|+++|+.||.|..+.+..+. ...++++|||+|.+.++|..|++.+++..+.+ +.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~----~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~-----~~~~ 71 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDK----DTKSKGFAFVEFEDEEDAEKALEALNGKELGG-----RPLR 71 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCC----CCCcceEEEEEECCHHHHHHHHHHhCCCeECC-----eEEE
Confidence 58999999999999999999999999999998765 22567899999999999999999999999865 3677
Q ss_pred EEe
Q 030465 159 LQF 161 (177)
Q Consensus 159 V~~ 161 (177)
|+|
T Consensus 72 v~~ 74 (74)
T cd00590 72 VEF 74 (74)
T ss_pred EeC
Confidence 764
No 49
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.40 E-value=8.5e-13 Score=102.43 Aligned_cols=78 Identities=26% Similarity=0.402 Sum_probs=70.9
Q ss_pred CCeEEEcCCCCCCCHHHHHH----hhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCC
Q 030465 77 SSTLYVEGLPADSTKREVAH----IFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 152 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~----lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~ 152 (177)
+.||||.||+..+..++|++ ||++||.|.+|.... +.+.+|.|||.|.+.+.|..|+..|+|+.+.++
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k------t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK-- 80 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK------TPKMRGQAFVVFKETEAASAALRALQGFPFYGK-- 80 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC------CCCccCceEEEecChhHHHHHHHHhcCCcccCc--
Confidence 56999999999999999988 999999999887643 467889999999999999999999999999885
Q ss_pred CCcceEEEeecCC
Q 030465 153 DSKFLRLQFSRNP 165 (177)
Q Consensus 153 ~~r~l~V~~a~~~ 165 (177)
+++|+||+++
T Consensus 81 ---~mriqyA~s~ 90 (221)
T KOG4206|consen 81 ---PMRIQYAKSD 90 (221)
T ss_pred ---hhheecccCc
Confidence 7999999876
No 50
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=4.3e-13 Score=106.59 Aligned_cols=83 Identities=24% Similarity=0.490 Sum_probs=77.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+.|.|||-+||.+..+.||...|-.||.|.+.++..|+ -+..+|+|+||.|+++.+|+.||..|||+.|.-+
T Consensus 284 eGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDR---ATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMK----- 355 (371)
T KOG0146|consen 284 EGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDR---ATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMK----- 355 (371)
T ss_pred CcceEEEEeCchhhccHHHHHHhccccceeeeeeeehh---ccccccceeeEecCCchhHHHHHHHhcchhhhhh-----
Confidence 37999999999999999999999999999999999998 6788999999999999999999999999999774
Q ss_pred ceEEEeecCCC
Q 030465 156 FLRLQFSRNPG 166 (177)
Q Consensus 156 ~l~V~~a~~~~ 166 (177)
+|+|++-+++.
T Consensus 356 RLKVQLKRPkd 366 (371)
T KOG0146|consen 356 RLKVQLKRPKD 366 (371)
T ss_pred hhhhhhcCccc
Confidence 79999887664
No 51
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=3e-12 Score=101.49 Aligned_cols=81 Identities=25% Similarity=0.413 Sum_probs=75.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.-+|||-||.++++|.-|+++|.+||.|..|++++|- .+.+.|||+||.+.+-++|..||..|||+.+.+ |.
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~---ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~-----rv 349 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDF---TTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD-----RV 349 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecC---CcccccceeEEEecchHHHHHHHHHhcCccccc-----eE
Confidence 5689999999999999999999999999999999997 668899999999999999999999999999966 58
Q ss_pred eEEEeecCC
Q 030465 157 LRLQFSRNP 165 (177)
Q Consensus 157 l~V~~a~~~ 165 (177)
|.|.|-.++
T Consensus 350 LQVsFKtnk 358 (360)
T KOG0145|consen 350 LQVSFKTNK 358 (360)
T ss_pred EEEEEecCC
Confidence 999997664
No 52
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=2.2e-12 Score=110.82 Aligned_cols=80 Identities=21% Similarity=0.361 Sum_probs=73.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.-.|.|.||||.|.+.+|+.+|+.||.|.+|.|.... .|+.+|||||.|.+..+|..|++.+|+.+|++ |+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~----dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~g-----R~ 187 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK----DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDG-----RP 187 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC----CCCccceEEEEEeeHHHHHHHHHhccCceecC-----ce
Confidence 4579999999999999999999999999999998654 67777999999999999999999999999976 68
Q ss_pred eEEEeecCC
Q 030465 157 LRLQFSRNP 165 (177)
Q Consensus 157 l~V~~a~~~ 165 (177)
|-|+||-.+
T Consensus 188 VAVDWAV~K 196 (678)
T KOG0127|consen 188 VAVDWAVDK 196 (678)
T ss_pred eEEeeeccc
Confidence 999999765
No 53
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.33 E-value=4.1e-12 Score=106.79 Aligned_cols=77 Identities=19% Similarity=0.368 Sum_probs=70.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhC-CCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFR-PFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~-~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
.+.+||.|||+++.+++|++||. +.|.|..|+|+.|. .||++|||.|||++++.+++|++.||.+.+.+ |
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~----~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~G-----R 114 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE----SGKARGCAVVEFKDPENVQKALEKLNKYEVNG-----R 114 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc----CCCcCCceEEEeeCHHHHHHHHHHhhhccccC-----c
Confidence 46699999999999999999996 66999999999996 79999999999999999999999999999955 6
Q ss_pred ceEEEee
Q 030465 156 FLRLQFS 162 (177)
Q Consensus 156 ~l~V~~a 162 (177)
+|+|.-.
T Consensus 115 ~l~vKEd 121 (608)
T KOG4212|consen 115 ELVVKED 121 (608)
T ss_pred eEEEecc
Confidence 8988754
No 54
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.32 E-value=3.5e-12 Score=113.11 Aligned_cols=79 Identities=25% Similarity=0.487 Sum_probs=73.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
++||||+.|+..++|.||..+|+.||.|.+|.++..+ +||||.+....+|++|+.+|+.+.+.. +.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R---------~cAfI~M~~RqdA~kalqkl~n~kv~~-----k~ 486 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR---------GCAFIKMVRRQDAEKALQKLSNVKVAD-----KT 486 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC---------ceeEEEEeehhHHHHHHHHHhcccccc-----ee
Confidence 7899999999999999999999999999999998765 699999999999999999999999966 48
Q ss_pred eEEEeecCCCCCC
Q 030465 157 LRLQFSRNPGPRS 169 (177)
Q Consensus 157 l~V~~a~~~~~r~ 169 (177)
|+|.|+..++.+.
T Consensus 487 Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 487 IKIAWAVGKGPKS 499 (894)
T ss_pred eEEeeeccCCcch
Confidence 9999999987775
No 55
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=5.1e-12 Score=108.57 Aligned_cols=80 Identities=25% Similarity=0.417 Sum_probs=71.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHh-----CC-CeeCCC
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSAL-----QG-YRMDED 150 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l-----~g-~~l~~~ 150 (177)
..||||.|||+++||++|.++|++||.|..+.|+.++ .++.++|.|||.|.+...|..||+.- .| +.|++
T Consensus 292 ~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k---~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~G- 367 (678)
T KOG0127|consen 292 GKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDK---DTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDG- 367 (678)
T ss_pred cceEEEecCCccccHHHHHHHHHhhccceeEEEEecc---CCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEec-
Confidence 5899999999999999999999999999999999988 78999999999999999999999877 33 55544
Q ss_pred CCCCcceEEEeecC
Q 030465 151 DPDSKFLRLQFSRN 164 (177)
Q Consensus 151 ~~~~r~l~V~~a~~ 164 (177)
|.|+|..|-.
T Consensus 368 ----R~Lkv~~Av~ 377 (678)
T KOG0127|consen 368 ----RLLKVTLAVT 377 (678)
T ss_pred ----cEEeeeeccc
Confidence 6899988754
No 56
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.32 E-value=1.1e-11 Score=77.02 Aligned_cols=56 Identities=21% Similarity=0.438 Sum_probs=49.1
Q ss_pred HHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcceEEEee
Q 030465 94 VAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFS 162 (177)
Q Consensus 94 L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~l~V~~a 162 (177)
|.++|++||.|.++++..++ +++|||+|.+.++|+.|++.||+..+.+ ++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--------~~~a~V~f~~~~~A~~a~~~l~~~~~~g-----~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--------RGFAFVEFASVEDAQKAIEQLNGRQFNG-----RPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--------TTEEEEEESSHHHHHHHHHHHTTSEETT-----EEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC--------CCEEEEEECCHHHHHHHHHHhCCCEECC-----cEEEEEEC
Confidence 67899999999999987653 3599999999999999999999999966 58999997
No 57
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=1.1e-11 Score=98.71 Aligned_cols=87 Identities=25% Similarity=0.391 Sum_probs=77.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+-|...-.|||++.||..||.|.+|.+.... .|.+||||||.|.+..+|..||..|||...... -.-.
T Consensus 19 drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~----dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpG--ASSS 92 (371)
T KOG0146|consen 19 DRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP----DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPG--ASSS 92 (371)
T ss_pred chhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC----CCCCCCceEEEeccchHHHHHHHHhcccccCCC--Cccc
Confidence 6899999999999999999999999999999998774 688999999999999999999999999877654 2347
Q ss_pred eEEEeecCCCCCC
Q 030465 157 LRLQFSRNPGPRS 169 (177)
Q Consensus 157 l~V~~a~~~~~r~ 169 (177)
|.|.|+...++|.
T Consensus 93 LVVK~ADTdkER~ 105 (371)
T KOG0146|consen 93 LVVKFADTDKERT 105 (371)
T ss_pred eEEEeccchHHHH
Confidence 9999998776654
No 58
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.27 E-value=5.9e-12 Score=101.05 Aligned_cols=74 Identities=23% Similarity=0.335 Sum_probs=69.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
.+.+|+|+||.+.++.+||+..|++||.+.+|+|+++ |+||.|+-.++|..|++.||+.+++++
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-----------y~fvh~d~~eda~~air~l~~~~~~gk----- 140 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-----------YAFVHFDRAEDAVEAIRGLDNTEFQGK----- 140 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeeeecc-----------eeEEEEeeccchHHHHhcccccccccc-----
Confidence 3789999999999999999999999999999999876 999999999999999999999999775
Q ss_pred ceEEEeecCC
Q 030465 156 FLRLQFSRNP 165 (177)
Q Consensus 156 ~l~V~~a~~~ 165 (177)
+|+|+.+.+.
T Consensus 141 ~m~vq~stsr 150 (346)
T KOG0109|consen 141 RMHVQLSTSR 150 (346)
T ss_pred eeeeeeeccc
Confidence 8999998664
No 59
>smart00361 RRM_1 RNA recognition motif.
Probab=99.26 E-value=2.5e-11 Score=79.08 Aligned_cols=63 Identities=17% Similarity=0.241 Sum_probs=52.1
Q ss_pred HHHHHHhhC----CCCCEEEEE-EeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcceEE
Q 030465 91 KREVAHIFR----PFVGYKEVR-LVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRL 159 (177)
Q Consensus 91 e~~L~~lF~----~~G~i~~v~-l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~l~V 159 (177)
+++|+++|+ .||.|.+|. ++.++.. .++.++||+||+|.+.++|.+|++.|||..+.+ |.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~-~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~g-----r~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVG-YENHKRGNVYITFERSEDAARAIVDLNGRYFDG-----RTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCC-CCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC-----EEEEe
Confidence 678999998 999999995 6555411 127899999999999999999999999999976 46665
No 60
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.26 E-value=1.6e-10 Score=89.95 Aligned_cols=92 Identities=30% Similarity=0.509 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCC
Q 030465 74 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 153 (177)
Q Consensus 74 ~~~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~ 153 (177)
++.-+||||.+||.|+...||..||..|-..+.+.|..... ...-.+-+|||+|.+...|.+|++.|||..|+-. .
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk--~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE--~ 106 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSK--GDQVCKPVAFATFTSHQFALAAMNALNGVRFDPE--T 106 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccC--CCccccceEEEEecchHHHHHHHHHhcCeeeccc--c
Confidence 34479999999999999999999999998887776644320 1112346999999999999999999999999987 3
Q ss_pred CcceEEEeecCCCCCC
Q 030465 154 SKFLRLQFSRNPGPRS 169 (177)
Q Consensus 154 ~r~l~V~~a~~~~~r~ 169 (177)
+..|+|++||+..++.
T Consensus 107 ~stLhiElAKSNtK~k 122 (284)
T KOG1457|consen 107 GSTLHIELAKSNTKRK 122 (284)
T ss_pred CceeEeeehhcCcccc
Confidence 4689999999865443
No 61
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=6.1e-12 Score=103.80 Aligned_cols=77 Identities=19% Similarity=0.355 Sum_probs=71.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
-|.||||.|.+++.|+.|+..|..||.|++|.+-+|. .++++||||||||+-++.|+-|++.|||..+.++ -
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp---~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGR-----N 184 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDP---ATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGR-----N 184 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeeccccc---ccccccceEEEEEeCcHHHHHHHHHhccccccCc-----c
Confidence 4889999999999999999999999999999999998 7899999999999999999999999999999774 5
Q ss_pred eEEEe
Q 030465 157 LRLQF 161 (177)
Q Consensus 157 l~V~~ 161 (177)
|+|..
T Consensus 185 iKVgr 189 (544)
T KOG0124|consen 185 IKVGR 189 (544)
T ss_pred ccccC
Confidence 88764
No 62
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.25 E-value=1e-11 Score=106.63 Aligned_cols=77 Identities=26% Similarity=0.433 Sum_probs=70.6
Q ss_pred CeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcce
Q 030465 78 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 157 (177)
Q Consensus 78 ~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~l 157 (177)
..|||+||.+++||++|+.+|+.||.|..|.+..+. .+|.++||+||+|.+.++|.+|++.|||++|-+ |.|
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~---~tG~skgfGfi~f~~~~~ar~a~e~lngfelAG-----r~i 350 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDS---ETGRSKGFGFITFVNKEDARKALEQLNGFELAG-----RLI 350 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeecccc---ccccccCcceEEEecHHHHHHHHHHhccceecC-----ceE
Confidence 349999999999999999999999999999998886 689999999999999999999999999999965 678
Q ss_pred EEEee
Q 030465 158 RLQFS 162 (177)
Q Consensus 158 ~V~~a 162 (177)
+|...
T Consensus 351 kV~~v 355 (549)
T KOG0147|consen 351 KVSVV 355 (549)
T ss_pred EEEEe
Confidence 88764
No 63
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.23 E-value=2.8e-11 Score=92.85 Aligned_cols=78 Identities=26% Similarity=0.428 Sum_probs=69.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCC-CCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPF-VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~-G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
...+||..+|.-+.+.+|..+|.+| |.++.+++-+++ +||.+||||||+|++.+.|+-|-+.||+|.|.++
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnk---rTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~----- 120 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNK---RTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEH----- 120 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeeccc---ccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhh-----
Confidence 4679999999999999999999999 666777776666 7999999999999999999999999999999885
Q ss_pred ceEEEee
Q 030465 156 FLRLQFS 162 (177)
Q Consensus 156 ~l~V~~a 162 (177)
.|.+.|-
T Consensus 121 lL~c~vm 127 (214)
T KOG4208|consen 121 LLECHVM 127 (214)
T ss_pred eeeeEEe
Confidence 6888876
No 64
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.23 E-value=1.9e-11 Score=92.27 Aligned_cols=85 Identities=12% Similarity=0.303 Sum_probs=74.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEE-EEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEV-RLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v-~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+..|||+||.++++|..|.++|+.||.+... +++++. .+|.+++|+||.|.+.+.+.+|+..+|++.+.. |
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~---~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~n-----r 167 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDP---DTGNPKGFGFINYASFEASDAAIGSMNGQYLCN-----R 167 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccc---cCCCCCCCeEEechhHHHHHHHHHHhccchhcC-----C
Confidence 5789999999999999999999999988653 677776 678999999999999999999999999999954 6
Q ss_pred ceEEEeecCCCCCC
Q 030465 156 FLRLQFSRNPGPRS 169 (177)
Q Consensus 156 ~l~V~~a~~~~~r~ 169 (177)
++.|+|+..+...+
T Consensus 168 ~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 168 PITVSYAFKKDTKG 181 (203)
T ss_pred ceEEEEEEecCCCc
Confidence 89999997664443
No 65
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=3.5e-11 Score=101.65 Aligned_cols=80 Identities=18% Similarity=0.321 Sum_probs=70.8
Q ss_pred eEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcceE
Q 030465 79 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLR 158 (177)
Q Consensus 79 tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~l~ 158 (177)
.|||.||+++++..+|.++|+.||.|.+|++..+. .| ++|| ||+|++++.|.+|++.|||..+.++ .|.
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~----~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~k-----ki~ 146 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE----NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGK-----KIY 146 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC----CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCC-----eeE
Confidence 39999999999999999999999999999999986 34 8999 9999999999999999999999775 688
Q ss_pred EEeecCCCCCC
Q 030465 159 LQFSRNPGPRS 169 (177)
Q Consensus 159 V~~a~~~~~r~ 169 (177)
|.....+..|.
T Consensus 147 vg~~~~~~er~ 157 (369)
T KOG0123|consen 147 VGLFERKEERE 157 (369)
T ss_pred Eeeccchhhhc
Confidence 87665554443
No 66
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.15 E-value=1.6e-10 Score=101.10 Aligned_cols=83 Identities=10% Similarity=0.200 Sum_probs=67.6
Q ss_pred CCCeEEEcCCCCC--C--------CHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCC
Q 030465 76 ASSTLYVEGLPAD--S--------TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY 145 (177)
Q Consensus 76 ~~~tLfV~nLp~~--~--------te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~ 145 (177)
++++|+|.||... + ..++|+++|++||.|..|+|........++..+|++||+|.+.++|++|+..|||.
T Consensus 408 ~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr 487 (509)
T TIGR01642 408 PTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGR 487 (509)
T ss_pred CceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCC
Confidence 3689999999642 1 23579999999999999999875322344566799999999999999999999999
Q ss_pred eeCCCCCCCcceEEEeec
Q 030465 146 RMDEDDPDSKFLRLQFSR 163 (177)
Q Consensus 146 ~l~~~~~~~r~l~V~~a~ 163 (177)
.|.+ |.|.|.|..
T Consensus 488 ~~~g-----r~v~~~~~~ 500 (509)
T TIGR01642 488 KFND-----RVVVAAFYG 500 (509)
T ss_pred EECC-----eEEEEEEeC
Confidence 9966 589999863
No 67
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.15 E-value=3.7e-10 Score=95.17 Aligned_cols=73 Identities=21% Similarity=0.281 Sum_probs=65.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.|+|||.|||+++|++.|++-|..||.|..+.|+. .|+++| .|.|.++++|+.|+..|++..|+++ -
T Consensus 536 a~qIiirNlP~dfTWqmlrDKfre~G~v~yadime------~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr-----~ 602 (608)
T KOG4212|consen 536 ACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME------NGKSKG--VVRFFSPEDAERACALMNGSRLDGR-----N 602 (608)
T ss_pred ccEEEEecCCccccHHHHHHHHHhccceehhhhhc------cCCccc--eEEecCHHHHHHHHHHhccCcccCc-----e
Confidence 57899999999999999999999999999988853 377776 8999999999999999999999774 6
Q ss_pred eEEEee
Q 030465 157 LRLQFS 162 (177)
Q Consensus 157 l~V~~a 162 (177)
|+|.|.
T Consensus 603 I~V~y~ 608 (608)
T KOG4212|consen 603 IKVTYF 608 (608)
T ss_pred eeeeeC
Confidence 999874
No 68
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.12 E-value=2e-10 Score=101.30 Aligned_cols=82 Identities=28% Similarity=0.385 Sum_probs=70.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcce
Q 030465 78 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 157 (177)
Q Consensus 78 ~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~l 157 (177)
++|||.||++++|.++|..+|...|.|.++.|...+.....-.+.||+||+|.+.++|+.|++.|+|+.|+++ .|
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH-----~l 590 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGH-----KL 590 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCc-----eE
Confidence 3499999999999999999999999999998877653322223669999999999999999999999999886 69
Q ss_pred EEEeecC
Q 030465 158 RLQFSRN 164 (177)
Q Consensus 158 ~V~~a~~ 164 (177)
.|+++.+
T Consensus 591 ~lk~S~~ 597 (725)
T KOG0110|consen 591 ELKISEN 597 (725)
T ss_pred EEEeccC
Confidence 9999973
No 69
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.10 E-value=6.6e-11 Score=104.26 Aligned_cols=81 Identities=32% Similarity=0.450 Sum_probs=73.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
+++|+|.|||+..+-.+++.||..||.+.+|+|.... ..+.++|||||+|-++.+|..|+++|..+.|.+ |+
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~---~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyG-----Rr 684 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKI---GKGAHRGFGFVDFLTPREAKNAFDALGSTHLYG-----RR 684 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhh---cchhhccceeeeccCcHHHHHHHHhhcccceec-----hh
Confidence 5789999999999999999999999999999998763 346688999999999999999999999999977 58
Q ss_pred eEEEeecCC
Q 030465 157 LRLQFSRNP 165 (177)
Q Consensus 157 l~V~~a~~~ 165 (177)
|.++||++.
T Consensus 685 LVLEwA~~d 693 (725)
T KOG0110|consen 685 LVLEWAKSD 693 (725)
T ss_pred hheehhccc
Confidence 999999764
No 70
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.07 E-value=6.5e-10 Score=91.18 Aligned_cols=74 Identities=19% Similarity=0.366 Sum_probs=64.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHh-CCCeeCCCCCCCc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSAL-QGYRMDEDDPDSK 155 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l-~g~~l~~~~~~~r 155 (177)
-+||||++|-..++|.+|++.|.+||+|+++++...+ ++|||+|.+.+.|+.|.+.+ +...|. ++
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~---------~CAFv~ftTR~aAE~Aae~~~n~lvI~-----G~ 293 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK---------GCAFVTFTTREAAEKAAEKSFNKLVIN-----GF 293 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc---------ccceeeehhhHHHHHHHHhhcceeeec-----ce
Confidence 5789999999999999999999999999999998765 49999999999999998755 444443 46
Q ss_pred ceEEEeecC
Q 030465 156 FLRLQFSRN 164 (177)
Q Consensus 156 ~l~V~~a~~ 164 (177)
+|+|.|.++
T Consensus 294 Rl~i~Wg~~ 302 (377)
T KOG0153|consen 294 RLKIKWGRP 302 (377)
T ss_pred EEEEEeCCC
Confidence 899999976
No 71
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.03 E-value=9.6e-10 Score=87.54 Aligned_cols=80 Identities=21% Similarity=0.332 Sum_probs=71.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
..+|+|.|||..|+++||++||++|+.+..+-+..++ .|.+.|.|-|.|...++|++|++.||+..+++. +
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~----~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~-----~ 153 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR----AGRSLGTADVSFNRRDDAERAVKKYNGVALDGR-----P 153 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC----CCCCCccceeeecchHhHHHHHHHhcCcccCCc-----e
Confidence 4789999999999999999999999988888887775 788999999999999999999999999888764 6
Q ss_pred eEEEeecCC
Q 030465 157 LRLQFSRNP 165 (177)
Q Consensus 157 l~V~~a~~~ 165 (177)
|+++...++
T Consensus 154 mk~~~i~~~ 162 (243)
T KOG0533|consen 154 MKIEIISSP 162 (243)
T ss_pred eeeEEecCc
Confidence 888776544
No 72
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.03 E-value=5.6e-10 Score=96.77 Aligned_cols=81 Identities=16% Similarity=0.335 Sum_probs=72.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.+.|||..|...+.-.+|+.||++||.|+-.+++++. ++---++|+||++.+..+|.+||+.||.+.|++ |.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNa---RsPGaRCYGfVTMSts~eAtkCI~hLHrTELHG-----rm 476 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNA---RSPGARCYGFVTMSTSAEATKCIEHLHRTELHG-----RM 476 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecC---CCCCcceeEEEEecchHHHHHHHHHhhhhhhcc-----ee
Confidence 5789999999999999999999999999999999875 333457899999999999999999999999977 58
Q ss_pred eEEEeecCC
Q 030465 157 LRLQFSRNP 165 (177)
Q Consensus 157 l~V~~a~~~ 165 (177)
|.|+-+++.
T Consensus 477 ISVEkaKNE 485 (940)
T KOG4661|consen 477 ISVEKAKNE 485 (940)
T ss_pred eeeeecccC
Confidence 999999875
No 73
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.02 E-value=6.3e-10 Score=92.05 Aligned_cols=81 Identities=16% Similarity=0.359 Sum_probs=72.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
-+.|||..+.++++|+||+.+|+.||.|.+|.+.... .++.+|||+|+||.+......||..||-+.|.++ -
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~p---t~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQ-----y 281 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAP---TGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQ-----Y 281 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccC---CCCCccceeeEEeccccchHHHhhhcchhhcccc-----e
Confidence 5789999999999999999999999999999998886 5667999999999999999999999999999776 6
Q ss_pred eEEEeecCC
Q 030465 157 LRLQFSRNP 165 (177)
Q Consensus 157 l~V~~a~~~ 165 (177)
|+|--+-.|
T Consensus 282 LRVGk~vTP 290 (544)
T KOG0124|consen 282 LRVGKCVTP 290 (544)
T ss_pred EecccccCC
Confidence 888665544
No 74
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=2.5e-09 Score=90.45 Aligned_cols=73 Identities=25% Similarity=0.354 Sum_probs=66.7
Q ss_pred CeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcce
Q 030465 78 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 157 (177)
Q Consensus 78 ~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~l 157 (177)
..|||+ +++||..|.++|+++|.+.++++..+. + +-|||||.|.++.+|++||+.||-..+.++ +|
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-----t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~-----~~ 67 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-----T-SLGYAYVNFQQPADAERALDTMNFDVLKGK-----PI 67 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-----C-ccceEEEecCCHHHHHHHHHHcCCcccCCc-----EE
Confidence 469999 999999999999999999999999984 3 789999999999999999999999999774 89
Q ss_pred EEEeecC
Q 030465 158 RLQFSRN 164 (177)
Q Consensus 158 ~V~~a~~ 164 (177)
+|-|+..
T Consensus 68 rim~s~r 74 (369)
T KOG0123|consen 68 RIMWSQR 74 (369)
T ss_pred Eeehhcc
Confidence 9999854
No 75
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.94 E-value=1e-09 Score=85.82 Aligned_cols=72 Identities=24% Similarity=0.432 Sum_probs=64.7
Q ss_pred CeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcce
Q 030465 78 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 157 (177)
Q Consensus 78 ~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~l 157 (177)
..+||++||+.+.+.+|+.||..||.|.++.+.. +|+||+|+|..+|+.|+..||+..|.+. .+
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~-----------gf~fv~fed~rda~Dav~~l~~~~l~~e-----~~ 65 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN-----------GFGFVEFEDPRDADDAVHDLDGKELCGE-----RL 65 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec-----------ccceeccCchhhhhcccchhcCceecce-----ee
Confidence 4689999999999999999999999999987744 4899999999999999999999999875 38
Q ss_pred EEEeecCC
Q 030465 158 RLQFSRNP 165 (177)
Q Consensus 158 ~V~~a~~~ 165 (177)
.|+|++..
T Consensus 66 vve~~r~~ 73 (216)
T KOG0106|consen 66 VVEHARGK 73 (216)
T ss_pred eeeccccc
Confidence 99999753
No 76
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.92 E-value=3.8e-09 Score=83.93 Aligned_cols=80 Identities=16% Similarity=0.262 Sum_probs=72.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
...+||+|+.+.+|.++++..|+.||.|..+.+..++ ..+.+|+|+||+|.+.+.++.|+. ||+..|.+. .
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~---~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~-----~ 171 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDK---FRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGP-----A 171 (231)
T ss_pred CceEEEeccccccccchhhheeeccCCccceeeeccc---cCCCcceeEEEecccHhhhHHHhh-cCCcccccc-----c
Confidence 6789999999999999999999999999988898887 567799999999999999999997 999999774 7
Q ss_pred eEEEeecCC
Q 030465 157 LRLQFSRNP 165 (177)
Q Consensus 157 l~V~~a~~~ 165 (177)
++|.+.+..
T Consensus 172 i~vt~~r~~ 180 (231)
T KOG4209|consen 172 IEVTLKRTN 180 (231)
T ss_pred ceeeeeeee
Confidence 888887654
No 77
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.92 E-value=5.9e-09 Score=85.58 Aligned_cols=80 Identities=20% Similarity=0.230 Sum_probs=71.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEE--------EEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeC
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYK--------EVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMD 148 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~--------~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~ 148 (177)
+..|||+|||.++|.+++.++|++||.|. .|+|..+. .|+.||-|+|.|-..++++-|++.|++..|.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~----~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN----QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC----CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 56799999999999999999999999875 47787775 5999999999999999999999999999997
Q ss_pred CCCCCCcceEEEeecCC
Q 030465 149 EDDPDSKFLRLQFSRNP 165 (177)
Q Consensus 149 ~~~~~~r~l~V~~a~~~ 165 (177)
+. .|+|+-|+..
T Consensus 210 g~-----~~rVerAkfq 221 (382)
T KOG1548|consen 210 GK-----KLRVERAKFQ 221 (382)
T ss_pred Cc-----EEEEehhhhh
Confidence 64 7999988764
No 78
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.91 E-value=1.6e-09 Score=89.35 Aligned_cols=70 Identities=21% Similarity=0.376 Sum_probs=60.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCC
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 149 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~ 149 (177)
+.++|||++|+|+++++.|++.|++||.|.+|.++.++ .+++++||+||+|++.+...+++.. .-+.|++
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~---~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dg 74 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDP---STGRSRGFGFVTFATPEGVDAVLNA-RTHKLDG 74 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccC---CCCCcccccceecCCCcchheeecc-cccccCC
Confidence 37899999999999999999999999999999999998 5689999999999998888888743 3344433
No 79
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.89 E-value=1.4e-09 Score=84.80 Aligned_cols=70 Identities=29% Similarity=0.538 Sum_probs=60.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCC
Q 030465 75 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 151 (177)
Q Consensus 75 ~~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~ 151 (177)
..+.||||-||.++|||++|+.+|+.|-.+..++|... +|. ..|||+|++.+.|..|+..|+|..|...+
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~-----~g~--~vaf~~~~~~~~at~am~~lqg~~~s~~d 277 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR-----GGM--PVAFADFEEIEQATDAMNHLQGNLLSSSD 277 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC-----CCc--ceEeecHHHHHHHHHHHHHhhcceecccc
Confidence 34789999999999999999999999988887777543 343 48999999999999999999999997653
No 80
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.89 E-value=6.1e-09 Score=88.93 Aligned_cols=81 Identities=27% Similarity=0.464 Sum_probs=64.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCC
Q 030465 75 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 154 (177)
Q Consensus 75 ~~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~ 154 (177)
....+|||.|||+++++++|+++|.+||.|+...|.... ..++..+|+||+|.+.+.++.||++- -..| ++
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~---~~~~~~~fgFV~f~~~~~~~~~i~As-p~~i-----g~ 356 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRS---PGGKNPCFGFVEFENAAAVQNAIEAS-PLEI-----GG 356 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEec---cCCCcCceEEEEEeecchhhhhhhcC-cccc-----CC
Confidence 345679999999999999999999999999998887654 34555589999999999999998654 3334 33
Q ss_pred cceEEEeecC
Q 030465 155 KFLRLQFSRN 164 (177)
Q Consensus 155 r~l~V~~a~~ 164 (177)
++|.|+--+.
T Consensus 357 ~kl~Veek~~ 366 (419)
T KOG0116|consen 357 RKLNVEEKRP 366 (419)
T ss_pred eeEEEEeccc
Confidence 5788875543
No 81
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.82 E-value=3.9e-09 Score=91.15 Aligned_cols=67 Identities=25% Similarity=0.329 Sum_probs=59.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCC
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 150 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~ 150 (177)
+..+|+|-|||..|++++|..+|+.||+|+.|+.-..+ ++.+||+|.|..+|++|++.|++.++.++
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~--------~~~~~v~FyDvR~A~~Alk~l~~~~~~~~ 140 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK--------RGIVFVEFYDVRDAERALKALNRREIAGK 140 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc--------CceEEEEEeehHhHHHHHHHHHHHHhhhh
Confidence 46899999999999999999999999999997654432 46999999999999999999999999775
No 82
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.82 E-value=2e-09 Score=83.64 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=66.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.+||||+|+-..++|+-|.+||-+-|.|.+|.|...+ .++.| ||||+|+++....-|++.+||..+.+. .
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~----d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~-----e 78 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ----DQEQK-FAYVFFPNENSVQLAGQLENGDDLEED-----E 78 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc----cCCCc-eeeeecccccchhhhhhhcccchhccc-----h
Confidence 6899999999999999999999999999999887765 46666 999999999999999999999999775 4
Q ss_pred eEEEe
Q 030465 157 LRLQF 161 (177)
Q Consensus 157 l~V~~ 161 (177)
|+|++
T Consensus 79 ~q~~~ 83 (267)
T KOG4454|consen 79 EQRTL 83 (267)
T ss_pred hhccc
Confidence 56554
No 83
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.78 E-value=1.9e-08 Score=89.18 Aligned_cols=83 Identities=24% Similarity=0.287 Sum_probs=71.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.+.|||+||++.++|+.|...|..||.|..++|++.++.-.....+-|+||-|-+..+|++|++.|+|..+.. +.
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~-----~e 248 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME-----YE 248 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee-----ee
Confidence 5679999999999999999999999999999999876333333455699999999999999999999999966 46
Q ss_pred eEEEeecC
Q 030465 157 LRLQFSRN 164 (177)
Q Consensus 157 l~V~~a~~ 164 (177)
+++-|++.
T Consensus 249 ~K~gWgk~ 256 (877)
T KOG0151|consen 249 MKLGWGKA 256 (877)
T ss_pred eeeccccc
Confidence 99999864
No 84
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.75 E-value=6e-08 Score=75.60 Aligned_cols=75 Identities=27% Similarity=0.615 Sum_probs=67.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
+.+||+.|||.+++.+.|..+|++|....+++++..+ ++.|||+|.+...|..|...|++..+.-++ .
T Consensus 146 n~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~--------~~iAfve~~~d~~a~~a~~~lq~~~it~~~----~ 213 (221)
T KOG4206|consen 146 NNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR--------SGIAFVEFLSDRQASAAQQALQGFKITKKN----T 213 (221)
T ss_pred ceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC--------CceeEEecchhhhhHHHhhhhccceeccCc----e
Confidence 7899999999999999999999999999999998865 248999999999999999999999997543 6
Q ss_pred eEEEeec
Q 030465 157 LRLQFSR 163 (177)
Q Consensus 157 l~V~~a~ 163 (177)
++|.|++
T Consensus 214 m~i~~a~ 220 (221)
T KOG4206|consen 214 MQITFAK 220 (221)
T ss_pred EEecccC
Confidence 9999885
No 85
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.71 E-value=1.4e-08 Score=80.40 Aligned_cols=79 Identities=20% Similarity=0.389 Sum_probs=71.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
....||++.|--+++++.|...|.+|-.....++++++ ++|+++||+||.|.+..++..|++.|+|.-+. .|
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdk---RTgKSkgygfVSf~~pad~~rAmrem~gkyVg-----sr 260 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDK---RTGKSKGYGFVSFRDPADYVRAMREMNGKYVG-----SR 260 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccc---cccccccceeeeecCHHHHHHHHHhhcccccc-----cc
Confidence 35789999999999999999999999999999999988 89999999999999999999999999999984 46
Q ss_pred ceEEEee
Q 030465 156 FLRLQFS 162 (177)
Q Consensus 156 ~l~V~~a 162 (177)
+|++.-+
T Consensus 261 piklRkS 267 (290)
T KOG0226|consen 261 PIKLRKS 267 (290)
T ss_pred hhHhhhh
Confidence 7776543
No 86
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.70 E-value=2.3e-08 Score=82.54 Aligned_cols=80 Identities=18% Similarity=0.306 Sum_probs=68.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
..+|||+.||.++++++|++.|++||.|..+.++.+. .+.++++|+||+|++++.+++++ ...-+.|.+ +.
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~---~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~g-----k~ 167 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDK---TTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNG-----KK 167 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecc---cccccccceeeEeccccccceec-ccceeeecC-----ce
Confidence 5689999999999999999999999999999999987 66789999999999999999886 455566654 35
Q ss_pred eEEEeecCC
Q 030465 157 LRLQFSRNP 165 (177)
Q Consensus 157 l~V~~a~~~ 165 (177)
+.|.-|.++
T Consensus 168 vevkrA~pk 176 (311)
T KOG4205|consen 168 VEVKRAIPK 176 (311)
T ss_pred eeEeeccch
Confidence 777777654
No 87
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.67 E-value=2.5e-07 Score=63.92 Aligned_cols=85 Identities=21% Similarity=0.330 Sum_probs=68.7
Q ss_pred CeEEEcCCCCCCCHHHHHHhhCCC--CCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 78 STLYVEGLPADSTKREVAHIFRPF--VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 78 ~tLfV~nLp~~~te~~L~~lF~~~--G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+||-|.|||...|.++|.+++... |...-+-+..|- .+.-+.|||||.|.+++.|.+-.+.++|..+..-+ ..+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf---~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~-s~K 77 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDF---KNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFN-SKK 77 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeec---cCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCC-CCc
Confidence 689999999999999999988643 555556666665 45668899999999999999999999999997543 345
Q ss_pred ceEEEeecCCC
Q 030465 156 FLRLQFSRNPG 166 (177)
Q Consensus 156 ~l~V~~a~~~~ 166 (177)
.+.|.||+-.+
T Consensus 78 vc~i~yAriQG 88 (97)
T PF04059_consen 78 VCEISYARIQG 88 (97)
T ss_pred EEEEehhHhhC
Confidence 78999997543
No 88
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.66 E-value=3.3e-07 Score=77.02 Aligned_cols=78 Identities=17% Similarity=0.266 Sum_probs=69.8
Q ss_pred CCeEEEcCCCC-CCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 77 SSTLYVEGLPA-DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 77 ~~tLfV~nLp~-~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+..|.|.||.. .+|.+.|..||.-||.|.+|+|+.++. --|+|.|.|...|+-|++.|+|.++.++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk--------d~ALIQmsd~~qAqLA~~hL~g~~l~gk----- 363 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK--------DNALIQMSDGQQAQLAMEHLEGHKLYGK----- 363 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC--------cceeeeecchhHHHHHHHHhhcceecCc-----
Confidence 68899999966 599999999999999999999998862 2699999999999999999999999884
Q ss_pred ceEEEeecCCCC
Q 030465 156 FLRLQFSRNPGP 167 (177)
Q Consensus 156 ~l~V~~a~~~~~ 167 (177)
+|+|.++|.+..
T Consensus 364 ~lrvt~SKH~~v 375 (492)
T KOG1190|consen 364 KLRVTLSKHTNV 375 (492)
T ss_pred eEEEeeccCccc
Confidence 799999997643
No 89
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.63 E-value=2.1e-07 Score=76.94 Aligned_cols=82 Identities=18% Similarity=0.326 Sum_probs=71.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEE--------EEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeC
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYK--------EVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMD 148 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~--------~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~ 148 (177)
..+|||.+||..+++++|.++|.+|+.|. .|.|.+++ .++++|+-|.|.|+|...|+.|+..+++..+.
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dk---eT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDK---ETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred cccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccc---cccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 68999999999999999999999999874 24455555 78999999999999999999999999999998
Q ss_pred CCCCCCcceEEEeecCCC
Q 030465 149 EDDPDSKFLRLQFSRNPG 166 (177)
Q Consensus 149 ~~~~~~r~l~V~~a~~~~ 166 (177)
+. +|+|.+++...
T Consensus 143 gn-----~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GN-----TIKVSLAERRT 155 (351)
T ss_pred CC-----Cchhhhhhhcc
Confidence 74 68888876543
No 90
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.55 E-value=7.8e-08 Score=83.43 Aligned_cols=82 Identities=26% Similarity=0.479 Sum_probs=74.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCC
Q 030465 74 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 153 (177)
Q Consensus 74 ~~~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~ 153 (177)
++..+++||++||..+++++++++...||.+...+++.+. .+|.++||||.+|.+......|+..|||.++.+.
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~---~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~--- 359 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDS---ATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDK--- 359 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccc---ccccccceeeeeeeCCcchhhhhcccchhhhcCc---
Confidence 3446889999999999999999999999999999999887 6688999999999999999999999999999875
Q ss_pred CcceEEEeec
Q 030465 154 SKFLRLQFSR 163 (177)
Q Consensus 154 ~r~l~V~~a~ 163 (177)
.|.|+.|-
T Consensus 360 --~lvvq~A~ 367 (500)
T KOG0120|consen 360 --KLVVQRAI 367 (500)
T ss_pred --eeEeehhh
Confidence 68888774
No 91
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.41 E-value=7.1e-07 Score=75.03 Aligned_cols=77 Identities=21% Similarity=0.332 Sum_probs=65.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
+.+|++.|+|.+++||+|+.+|.+-|...+......+ .+-+|++.+++.+.|..|+-.++.+.+.+.+ -
T Consensus 414 satlHlsnip~svsee~lk~~f~~~g~~vkafkff~k-------d~kmal~q~~sveeA~~ali~~hnh~lgen~----h 482 (492)
T KOG1190|consen 414 SATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQK-------DRKMALPQLESVEEAIQALIDLHNHYLGENH----H 482 (492)
T ss_pred hhheeeccCCcccchhHHHHhhhcCCceEEeeeecCC-------CcceeecccCChhHhhhhccccccccCCCCc----e
Confidence 7899999999999999999999999877655433322 1239999999999999999999999998764 4
Q ss_pred eEEEeecC
Q 030465 157 LRLQFSRN 164 (177)
Q Consensus 157 l~V~~a~~ 164 (177)
|+|+|+++
T Consensus 483 lRvSFSks 490 (492)
T KOG1190|consen 483 LRVSFSKS 490 (492)
T ss_pred EEEEeecc
Confidence 99999976
No 92
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.35 E-value=2.9e-06 Score=56.68 Aligned_cols=68 Identities=22% Similarity=0.285 Sum_probs=47.1
Q ss_pred CeEEEcCCCCCCCHHH----HHHhhCCCCC-EEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCC
Q 030465 78 STLYVEGLPADSTKRE----VAHIFRPFVG-YKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 152 (177)
Q Consensus 78 ~tLfV~nLp~~~te~~----L~~lF~~~G~-i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~ 152 (177)
+.|||.|||.+.+... |++|+..||+ |..| . . +.|+|.|.+.+.|++|.+.|+|..+.+.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~-~----------~tAilrF~~~~~A~RA~KRmegEdVfG~-- 67 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S-G----------GTAILRFPNQEFAERAQKRMEGEDVFGN-- 67 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----T----------T-EEEEESSHHHHHHHHHHHTT--SSSS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e-C----------CEEEEEeCCHHHHHHHHHhhcccccccc--
Confidence 4699999999988765 6678889965 3332 1 1 3799999999999999999999999885
Q ss_pred CCcceEEEeec
Q 030465 153 DSKFLRLQFSR 163 (177)
Q Consensus 153 ~~r~l~V~~a~ 163 (177)
.|.|+|..
T Consensus 68 ---kI~v~~~~ 75 (90)
T PF11608_consen 68 ---KISVSFSP 75 (90)
T ss_dssp -----EEESS-
T ss_pred ---eEEEEEcC
Confidence 69999984
No 93
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.35 E-value=1.7e-07 Score=80.98 Aligned_cols=80 Identities=19% Similarity=0.287 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCC
Q 030465 75 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 154 (177)
Q Consensus 75 ~~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~ 154 (177)
.+.+|+|+-.|+-.+++.+|.++|+.+|.|.+|+|+.++ .++.++|.+||+|.|.+....|| .|.|..+.+.
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr---~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~---- 248 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDR---NSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGV---- 248 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccc---cchhhcceeEEEEecccchhhHh-hhcCCcccCc----
Confidence 346899999999999999999999999999999999998 67889999999999999999999 8999999886
Q ss_pred cceEEEeec
Q 030465 155 KFLRLQFSR 163 (177)
Q Consensus 155 r~l~V~~a~ 163 (177)
+|.|+...
T Consensus 249 -pv~vq~sE 256 (549)
T KOG0147|consen 249 -PVIVQLSE 256 (549)
T ss_pred -eeEecccH
Confidence 68887643
No 94
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.30 E-value=2.3e-06 Score=73.33 Aligned_cols=74 Identities=18% Similarity=0.327 Sum_probs=57.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
...|=+..|||++|++||.++|+.|. |..+.+.+. +|++.|-|||||.+++++++|++ .|...+. .|-
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~-----~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg-----~RY 77 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR-----NGRPSGEAYVEFTSEEDVEKALK-KDRESMG-----HRY 77 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc-----CCCcCcceEEEeechHHHHHHHH-hhHHHhC-----Cce
Confidence 45566789999999999999999995 777666543 58888999999999999999995 4544442 245
Q ss_pred eEEEee
Q 030465 157 LRLQFS 162 (177)
Q Consensus 157 l~V~~a 162 (177)
|.|--+
T Consensus 78 IEVf~~ 83 (510)
T KOG4211|consen 78 IEVFTA 83 (510)
T ss_pred EEEEcc
Confidence 666443
No 95
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.16 E-value=1.7e-06 Score=71.62 Aligned_cols=79 Identities=11% Similarity=0.208 Sum_probs=65.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCC--CEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCC
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFV--GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 154 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G--~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~ 154 (177)
..++||+||-|++|++||.+.+...| .|.++++..++ ..|.+||||+|...+.....+-++.|--..|+++++
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR---~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P-- 154 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENR---TNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSP-- 154 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcc---cCCcccceEEEEecchHHHHHHHHhcccceecCCCC--
Confidence 35699999999999999988887654 45667777776 679999999999999999999999999999999864
Q ss_pred cceEEEee
Q 030465 155 KFLRLQFS 162 (177)
Q Consensus 155 r~l~V~~a 162 (177)
..+.|.
T Consensus 155 --~V~~~N 160 (498)
T KOG4849|consen 155 --TVLSYN 160 (498)
T ss_pred --eeeccc
Confidence 555553
No 96
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.13 E-value=3.4e-06 Score=69.17 Aligned_cols=83 Identities=25% Similarity=0.293 Sum_probs=70.9
Q ss_pred CCeEE-EcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 77 SSTLY-VEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 77 ~~tLf-V~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
..++| |++|++++++++|+..|..++.|..+++..+. .++.++||+||+|.+...+..++.. +...+.. +
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~---~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~-----~ 254 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDE---ESGDSKGFAYVDFSAGNSKKLALND-QTRSIGG-----R 254 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCC---CccchhhhhhhhhhhchhHHHHhhc-ccCcccC-----c
Confidence 45666 99999999999999999999999999998887 7899999999999999999988876 6666644 5
Q ss_pred ceEEEeecCCCCC
Q 030465 156 FLRLQFSRNPGPR 168 (177)
Q Consensus 156 ~l~V~~a~~~~~r 168 (177)
++.|.+.+..+.+
T Consensus 255 ~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 255 PLRLEEDEPRPKS 267 (285)
T ss_pred ccccccCCCCccc
Confidence 7999998765443
No 97
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.00 E-value=3.9e-05 Score=64.17 Aligned_cols=79 Identities=19% Similarity=0.249 Sum_probs=65.6
Q ss_pred CCCeEEEcCCC--CCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCC
Q 030465 76 ASSTLYVEGLP--ADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 153 (177)
Q Consensus 76 ~~~tLfV~nLp--~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~ 153 (177)
+++.|.+.-|. ..+|-+-|..+...+|.|..|.|..+. | ..|.|||++.+.|++|...|||..|...
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkn-----g---VQAmVEFdsv~~AqrAk~alNGADIYsG--- 187 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKN-----G---VQAMVEFDSVEVAQRAKAALNGADIYSG--- 187 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEecc-----c---eeeEEeechhHHHHHHHhhccccccccc---
Confidence 36667666554 469999999999999999999887653 3 3799999999999999999999999863
Q ss_pred CcceEEEeecCC
Q 030465 154 SKFLRLQFSRNP 165 (177)
Q Consensus 154 ~r~l~V~~a~~~ 165 (177)
=.+|+|+|||+.
T Consensus 188 CCTLKIeyAkP~ 199 (494)
T KOG1456|consen 188 CCTLKIEYAKPT 199 (494)
T ss_pred ceeEEEEecCcc
Confidence 258999999854
No 98
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.99 E-value=0.00014 Score=65.18 Aligned_cols=74 Identities=23% Similarity=0.407 Sum_probs=61.1
Q ss_pred CeEEEcCCCCCCCHHHHHHhhCCCCCEE-EEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 78 STLYVEGLPADSTKREVAHIFRPFVGYK-EVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 78 ~tLfV~nLp~~~te~~L~~lF~~~G~i~-~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
+.|-+.|+|++++-+||.++|..|-.+. +|++..+. .|+..|-|.|-|++.++|..|..-|++.+|.. |.
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd----~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~n-----r~ 938 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRND----DGVPTGECMVAFESQEEARRASMDLDGQKIRN-----RV 938 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecC----CCCcccceeEeecCHHHHHhhhhccccCcccc-----ee
Confidence 4788999999999999999999996653 45554443 57777899999999999999999999999955 45
Q ss_pred eEEE
Q 030465 157 LRLQ 160 (177)
Q Consensus 157 l~V~ 160 (177)
++|.
T Consensus 939 V~l~ 942 (944)
T KOG4307|consen 939 VSLR 942 (944)
T ss_pred EEEE
Confidence 6665
No 99
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.94 E-value=2.8e-05 Score=54.54 Aligned_cols=59 Identities=22% Similarity=0.342 Sum_probs=39.3
Q ss_pred CeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCC
Q 030465 78 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY 145 (177)
Q Consensus 78 ~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~ 145 (177)
+.|+|.+++..++-++|+++|++|+.|..|.+.... --|||-|.+.+.|+.|++.+.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~---------~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD---------TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT----------SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC---------CEEEEEECCcchHHHHHHHHHhc
Confidence 578999999999999999999999999988886543 17999999999999999887655
No 100
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.93 E-value=7e-06 Score=64.38 Aligned_cols=69 Identities=22% Similarity=0.271 Sum_probs=59.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.+.|+|.|++.++.+++|.+.|.++|.+....+.. .++||+|...++|..|++.|++..+.++ .
T Consensus 99 ~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~~-----------~~~~v~Fs~~~da~ra~~~l~~~~~~~~-----~ 162 (216)
T KOG0106|consen 99 HFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDARR-----------NFAFVEFSEQEDAKRALEKLDGKKLNGR-----R 162 (216)
T ss_pred cceeeeccchhhhhHHHHhhhhcccCCCchhhhhc-----------cccceeehhhhhhhhcchhccchhhcCc-----e
Confidence 57899999999999999999999999985554422 3899999999999999999999999775 6
Q ss_pred eEEEe
Q 030465 157 LRLQF 161 (177)
Q Consensus 157 l~V~~ 161 (177)
|++.+
T Consensus 163 l~~~~ 167 (216)
T KOG0106|consen 163 ISVEK 167 (216)
T ss_pred eeecc
Confidence 77744
No 101
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=2.9e-05 Score=67.85 Aligned_cols=77 Identities=22% Similarity=0.339 Sum_probs=62.7
Q ss_pred CCeEEEcCCCCC------CCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCC
Q 030465 77 SSTLYVEGLPAD------STKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 150 (177)
Q Consensus 77 ~~tLfV~nLp~~------~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~ 150 (177)
.+.|+|.|+|-- .-..-|..+|+++|.|....+..+. .|..+||.|++|.+..+|+.|++.|||+.|+-+
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e----~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDE----EGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCc----cCCeeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 467999999852 2233577899999999998887775 455999999999999999999999999999876
Q ss_pred CCCCcceEEEe
Q 030465 151 DPDSKFLRLQF 161 (177)
Q Consensus 151 ~~~~r~l~V~~ 161 (177)
+ ++.|..
T Consensus 134 H----tf~v~~ 140 (698)
T KOG2314|consen 134 H----TFFVRL 140 (698)
T ss_pred c----eEEeeh
Confidence 4 566653
No 102
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.80 E-value=3.7e-05 Score=65.22 Aligned_cols=71 Identities=24% Similarity=0.324 Sum_probs=56.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeec---CcccCCCC-------cceEEEEEecCHHHHHHHHHHhCCC
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK---ESKLRGGD-------PLILCFVDFENPACAATALSALQGY 145 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~---~~~~~~g~-------~kg~afV~f~~~~~A~~Ai~~l~g~ 145 (177)
+++||.+.|||.+-.-+.|.+||+.+|.|..|+|+.- ...-.... .+-+|+|+|+..+.|.+|.+.|+..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 4799999999999888999999999999999999765 11111111 2458999999999999999988644
Q ss_pred e
Q 030465 146 R 146 (177)
Q Consensus 146 ~ 146 (177)
.
T Consensus 310 ~ 310 (484)
T KOG1855|consen 310 Q 310 (484)
T ss_pred h
Confidence 3
No 103
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.78 E-value=0.00015 Score=62.52 Aligned_cols=66 Identities=23% Similarity=0.377 Sum_probs=50.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEE-EEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCee
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKE-VRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRM 147 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~-v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l 147 (177)
...|=+..||+.||++||.++|+-.-.+.. |.++.+. .+++.|=|||.|++.+.|++|+. -|...|
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~----rgR~tGEAfVqF~sqe~ae~Al~-rhre~i 169 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ----RGRPTGEAFVQFESQESAEIALG-RHRENI 169 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC----CCCcccceEEEecCHHHHHHHHH-HHHHhh
Confidence 467888999999999999999997654444 4444443 46677889999999999999984 343444
No 104
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.76 E-value=8e-05 Score=64.46 Aligned_cols=65 Identities=29% Similarity=0.350 Sum_probs=49.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcce---EEEEEecCHHHHHHHHHHh
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLI---LCFVDFENPACAATALSAL 142 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg---~afV~f~~~~~A~~Ai~~l 142 (177)
+++||||.||++++|++|...|..||.+. |....+...+..--++| |+|+.|+++..+..-+...
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 68999999999999999999999999864 44443222212223567 9999999999888766544
No 105
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.68 E-value=0.0012 Score=50.57 Aligned_cols=63 Identities=13% Similarity=0.122 Sum_probs=56.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCC
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 149 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~ 149 (177)
...|.|..||+.-++++|++...+-|.|....+..+ |++.|+|-..++.+-|+..|+...+.-
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD----------g~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD----------GVGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc----------cceeeeeeehhhHHHHHHhhccccccC
Confidence 467999999999999999999999999998888766 389999999999999999999888765
No 106
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.65 E-value=0.00011 Score=45.06 Aligned_cols=52 Identities=17% Similarity=0.288 Sum_probs=42.2
Q ss_pred CeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHH
Q 030465 78 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATAL 139 (177)
Q Consensus 78 ~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai 139 (177)
++|-|.+.+++..+.-|+ .|.+||.|.++.+.... -+.||.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~vl~-~F~~fGeI~~~~~~~~~---------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVLE-HFASFGEIVDIYVPEST---------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHHH-HHHhcCCEEEEEcCCCC---------cEEEEEECCHHHHHhhC
Confidence 578889999887766665 78899999998875222 28999999999999985
No 107
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.64 E-value=7.7e-05 Score=68.24 Aligned_cols=77 Identities=18% Similarity=0.315 Sum_probs=68.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
++.+||+.|..++....|...|..||.|..|.+-... -||||.|++...++.|++.|.+..|.+. .++
T Consensus 455 ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq---------~yayi~yes~~~aq~a~~~~rgap~G~P---~~r 522 (975)
T KOG0112|consen 455 TTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ---------PYAYIQYESPPAAQAATHDMRGAPLGGP---PRR 522 (975)
T ss_pred ceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC---------cceeeecccCccchhhHHHHhcCcCCCC---Ccc
Confidence 6789999999999999999999999999987764332 3999999999999999999999999884 457
Q ss_pred eEEEeecCC
Q 030465 157 LRLQFSRNP 165 (177)
Q Consensus 157 l~V~~a~~~ 165 (177)
|+|.|+..+
T Consensus 523 ~rvdla~~~ 531 (975)
T KOG0112|consen 523 LRVDLASPP 531 (975)
T ss_pred cccccccCC
Confidence 999999765
No 108
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.63 E-value=0.0026 Score=53.50 Aligned_cols=77 Identities=13% Similarity=0.179 Sum_probs=66.9
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCC
Q 030465 76 ASSTLYVEGLPAD-STKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 154 (177)
Q Consensus 76 ~~~tLfV~nLp~~-~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~ 154 (177)
+.+.+.|-.|... ++-+-|..||-.||.|.+|+++..+ . |-|.||+.|....++|+..||+..+.+.
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----~----gtamVemgd~~aver~v~hLnn~~lfG~---- 353 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----P----GTAMVEMGDAYAVERAVTHLNNIPLFGG---- 353 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----c----ceeEEEcCcHHHHHHHHHHhccCccccc----
Confidence 3788999999765 6777899999999999999998876 2 4799999999999999999999999875
Q ss_pred cceEEEeecCC
Q 030465 155 KFLRLQFSRNP 165 (177)
Q Consensus 155 r~l~V~~a~~~ 165 (177)
+|.|++++..
T Consensus 354 -kl~v~~SkQ~ 363 (494)
T KOG1456|consen 354 -KLNVCVSKQN 363 (494)
T ss_pred -eEEEeecccc
Confidence 6888888754
No 109
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.61 E-value=8.5e-05 Score=65.34 Aligned_cols=79 Identities=19% Similarity=0.258 Sum_probs=64.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhCCC-CCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCC
Q 030465 75 DASSTLYVEGLPADSTKREVAHIFRPF-VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 153 (177)
Q Consensus 75 ~~~~tLfV~nLp~~~te~~L~~lF~~~-G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~ 153 (177)
..++.|||.||-.-+|.-+|+.|+..- |.|.+. +.++. |..|||.|.+.++|..-+.+|||..+... +
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDkI-------KShCyV~yss~eEA~atr~AlhnV~WP~s--N 510 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDKI-------KSHCYVSYSSVEEAAATREALHNVQWPPS--N 510 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHH--HHHHh-------hcceeEecccHHHHHHHHHHHhccccCCC--C
Confidence 347899999999999999999999954 545444 44442 33799999999999999999999999887 4
Q ss_pred CcceEEEeecC
Q 030465 154 SKFLRLQFSRN 164 (177)
Q Consensus 154 ~r~l~V~~a~~ 164 (177)
.+.|.+.|...
T Consensus 511 PK~L~adf~~~ 521 (718)
T KOG2416|consen 511 PKHLIADFVRA 521 (718)
T ss_pred CceeEeeecch
Confidence 47899999753
No 110
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.61 E-value=0.00022 Score=59.14 Aligned_cols=82 Identities=18% Similarity=0.359 Sum_probs=61.4
Q ss_pred CCeEEEcCCCCCCCHHH----H--HHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCC
Q 030465 77 SSTLYVEGLPADSTKRE----V--AHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 150 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~----L--~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~ 150 (177)
.+-+||-.||+.+-.++ | .++|.+||.|.+|.+..+.+..++-.+---.||+|...++|..||...+|..+++
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG- 192 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG- 192 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC-
Confidence 46799999998877766 2 4789999999998775543221211111124999999999999999999999977
Q ss_pred CCCCcceEEEeec
Q 030465 151 DPDSKFLRLQFSR 163 (177)
Q Consensus 151 ~~~~r~l~V~~a~ 163 (177)
|.|+..|..
T Consensus 193 ----r~lkatYGT 201 (480)
T COG5175 193 ----RVLKATYGT 201 (480)
T ss_pred ----ceEeeecCc
Confidence 479988864
No 111
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.57 E-value=0.00063 Score=45.49 Aligned_cols=56 Identities=18% Similarity=0.343 Sum_probs=43.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCC
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQG 144 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g 144 (177)
....||. .|.+.-..||.+||+.||.|. |..+.+. -|||...+.+.|..++..+.-
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT----------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT----------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT----------EEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC----------cEEEEeecHHHHHHHHHHhcc
Confidence 3556665 999999999999999999876 6677664 699999999999999998863
No 112
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.48 E-value=6.7e-05 Score=63.72 Aligned_cols=79 Identities=22% Similarity=0.246 Sum_probs=58.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcce
Q 030465 78 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 157 (177)
Q Consensus 78 ~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~l 157 (177)
++||++||.+.++.++|+.+|....--.+-.++... ||+||.+.+...|.+|++.+++..=. .+.++
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~---------gyafvd~pdq~wa~kaie~~sgk~el----qGkr~ 68 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKS---------GYAFVDCPDQQWANKAIETLSGKVEL----QGKRQ 68 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeec---------ceeeccCCchhhhhhhHHhhchhhhh----cCcee
Confidence 579999999999999999999754111111222222 59999999999999999999986543 23478
Q ss_pred EEEeecCCCCCC
Q 030465 158 RLQFSRNPGPRS 169 (177)
Q Consensus 158 ~V~~a~~~~~r~ 169 (177)
.|+++-.+..|+
T Consensus 69 e~~~sv~kkqrs 80 (584)
T KOG2193|consen 69 EVEHSVPKKQRS 80 (584)
T ss_pred eccchhhHHHHh
Confidence 998887666555
No 113
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.00039 Score=60.27 Aligned_cols=67 Identities=31% Similarity=0.320 Sum_probs=57.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhC-CCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHH
Q 030465 72 LPPDASSTLYVEGLPADSTKREVAHIFR-PFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSA 141 (177)
Q Consensus 72 ~p~~~~~tLfV~nLp~~~te~~L~~lF~-~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~ 141 (177)
.+-++.+|||||.||.-++-++|..+|+ .||.|..+-|-+|. +=..++|-+-|+|.+...-.+||++
T Consensus 365 q~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~---k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 365 QPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDP---KLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCc---ccCCCCCcceeeecccHHHHHHHhh
Confidence 4556689999999999999999999999 79999999887773 2345778899999999999999863
No 114
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.39 E-value=0.00012 Score=58.43 Aligned_cols=75 Identities=15% Similarity=0.218 Sum_probs=59.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcc-----cCCCCcce----EEEEEecCHHHHHHHHHHhCCCee
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESK-----LRGGDPLI----LCFVDFENPACAATALSALQGYRM 147 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~-----~~~g~~kg----~afV~f~~~~~A~~Ai~~l~g~~l 147 (177)
.-.||+++||+.+...-|+++|++||.|-.|.|...... ...|.... =+.|+|.+...|..+...||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 457999999999999999999999999988877665411 01122221 257999999999999999999999
Q ss_pred CCCC
Q 030465 148 DEDD 151 (177)
Q Consensus 148 ~~~~ 151 (177)
.+.+
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 8863
No 115
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.30 E-value=0.0003 Score=59.24 Aligned_cols=72 Identities=17% Similarity=0.214 Sum_probs=57.4
Q ss_pred CeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCC
Q 030465 78 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 150 (177)
Q Consensus 78 ~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~ 150 (177)
..|-|.||.+.+|.++++.||...|.|.+++|+.......--...-.|||.|.|...+..|- .|.++.+-+.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdr 79 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDR 79 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeee
Confidence 47899999999999999999999999999999875322122223458999999999999885 6777777663
No 116
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.18 E-value=0.0016 Score=57.05 Aligned_cols=81 Identities=15% Similarity=0.213 Sum_probs=55.0
Q ss_pred CCeEEEcCC--CCC-CCHHH-------HHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCe
Q 030465 77 SSTLYVEGL--PAD-STKRE-------VAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYR 146 (177)
Q Consensus 77 ~~tLfV~nL--p~~-~te~~-------L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~ 146 (177)
...|.+.|+ |.+ ..++| ++.-+++||.|.+|.+..........-.-|-.||+|.+.+++++|.+.|+|.+
T Consensus 399 t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrK 478 (500)
T KOG0120|consen 399 TEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRK 478 (500)
T ss_pred chhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCce
Confidence 566776665 222 22333 33445689999999887762111122234678999999999999999999999
Q ss_pred eCCCCCCCcceEEEee
Q 030465 147 MDEDDPDSKFLRLQFS 162 (177)
Q Consensus 147 l~~~~~~~r~l~V~~a 162 (177)
+.+ |.+...|-
T Consensus 479 F~n-----RtVvtsYy 489 (500)
T KOG0120|consen 479 FAN-----RTVVASYY 489 (500)
T ss_pred eCC-----cEEEEEec
Confidence 966 56776664
No 117
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.06 E-value=0.002 Score=53.55 Aligned_cols=74 Identities=16% Similarity=0.221 Sum_probs=57.4
Q ss_pred CCeEEEcCCC----CCCC-------HHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCC
Q 030465 77 SSTLYVEGLP----ADST-------KREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY 145 (177)
Q Consensus 77 ~~tLfV~nLp----~~~t-------e~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~ 145 (177)
.+||.+.||= ++.+ +++|.+-.++||.|.+|.|.... +.|.+.|.|.+.+.|+.||+.|+|.
T Consensus 265 ~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~h-------PdGvvtV~f~n~eeA~~ciq~m~GR 337 (382)
T KOG1548|consen 265 DRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRH-------PDGVVTVSFRNNEEADQCIQTMDGR 337 (382)
T ss_pred CcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccC-------CCceeEEEeCChHHHHHHHHHhcCe
Confidence 6899999983 2344 33555667899999998776443 4579999999999999999999999
Q ss_pred eeCCCCCCCcceEEEee
Q 030465 146 RMDEDDPDSKFLRLQFS 162 (177)
Q Consensus 146 ~l~~~~~~~r~l~V~~a 162 (177)
.+.+ |.|..+..
T Consensus 338 ~fdg-----Rql~A~i~ 349 (382)
T KOG1548|consen 338 WFDG-----RQLTASIW 349 (382)
T ss_pred eecc-----eEEEEEEe
Confidence 9976 46776653
No 118
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.06 E-value=0.00028 Score=64.34 Aligned_cols=77 Identities=22% Similarity=0.237 Sum_probs=66.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
...|||.|+|+..|.++|+.++..+|.+++++++..+ .|+++|.|||.|.++.++.+++...+...+... -
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r----~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~-----~ 806 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR----AGKPKGKARVDYNTEADASRKVASVDVAGKREN-----N 806 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh----ccccccceeccCCCcchhhhhcccchhhhhhhc-----C
Confidence 4679999999999999999999999999999988775 789999999999999999999887777777554 3
Q ss_pred eEEEee
Q 030465 157 LRLQFS 162 (177)
Q Consensus 157 l~V~~a 162 (177)
+.|+.+
T Consensus 807 ~~v~vs 812 (881)
T KOG0128|consen 807 GEVQVS 812 (881)
T ss_pred cccccc
Confidence 555553
No 119
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.03 E-value=0.0017 Score=58.35 Aligned_cols=83 Identities=22% Similarity=0.267 Sum_probs=61.6
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHhhCCCCCEEE-EEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeC
Q 030465 70 LPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKE-VRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMD 148 (177)
Q Consensus 70 ~~~p~~~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~-v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~ 148 (177)
.+.|......|||-.||..+++.++.++|..--.|++ |.|... .+++.++.|||+|.+++.+..|...-+.+-+.
T Consensus 427 vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~----P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G 502 (944)
T KOG4307|consen 427 VPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL----PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPG 502 (944)
T ss_pred CCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccC----CcccccchhhheeccccccchhhhcccccccC
Confidence 3455555889999999999999999999998777776 555443 35666779999999988888887544433332
Q ss_pred CCCCCCcceEEEe
Q 030465 149 EDDPDSKFLRLQF 161 (177)
Q Consensus 149 ~~~~~~r~l~V~~ 161 (177)
.|.|+|.-
T Consensus 503 -----~r~irv~s 510 (944)
T KOG4307|consen 503 -----HRIIRVDS 510 (944)
T ss_pred -----ceEEEeec
Confidence 25788863
No 120
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.96 E-value=0.0021 Score=49.21 Aligned_cols=87 Identities=11% Similarity=0.166 Sum_probs=54.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCC-CCCE---EEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCC
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRP-FVGY---KEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 152 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~-~G~i---~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~ 152 (177)
..+|.|.+||+.+||+++.+.++. ++.. ..+.-.......... .-.-|||.|.+.+++..=...++|+.+.+...
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~-~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPP-TYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS---EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCC-cceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 578999999999999999998877 5655 233311221110111 12359999999999999999999999987642
Q ss_pred CCcceEEEeecC
Q 030465 153 DSKFLRLQFSRN 164 (177)
Q Consensus 153 ~~r~l~V~~a~~ 164 (177)
...+-.|+||-.
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 224678888865
No 121
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.91 E-value=0.0074 Score=51.02 Aligned_cols=60 Identities=32% Similarity=0.378 Sum_probs=46.8
Q ss_pred CeEEEcCCCCCCCHHHHHHhhCCC----CCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHH
Q 030465 78 STLYVEGLPADSTKREVAHIFRPF----VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSA 141 (177)
Q Consensus 78 ~tLfV~nLp~~~te~~L~~lF~~~----G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~ 141 (177)
-.|-+.+||+++|+.|+.++|.+- +....|-+++.. .|+..|-|||.|..+++|+.|+..
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp----dgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP----DGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC----CCCcccceEEEecCHHHHHHHHHH
Confidence 345568999999999999999632 345566666653 567778999999999999999853
No 122
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.85 E-value=0.0044 Score=39.23 Aligned_cols=54 Identities=22% Similarity=0.390 Sum_probs=44.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhCCC---CCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHh
Q 030465 78 STLYVEGLPADSTKREVAHIFRPF---VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSAL 142 (177)
Q Consensus 78 ~tLfV~nLp~~~te~~L~~lF~~~---G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l 142 (177)
.+|+|.++ .+++.++|+.+|..| .....|+++.+. -|-|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdDt----------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDDT----------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecCC----------cEEEEECCHHHHHHHHHcC
Confidence 68999998 458889999999988 234568888886 5899999999999999764
No 123
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.61 E-value=0.011 Score=41.03 Aligned_cols=78 Identities=21% Similarity=0.279 Sum_probs=48.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCc------ccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCC
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKES------KLRGGDPLILCFVDFENPACAATALSALQGYRMDED 150 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~------~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~ 150 (177)
.+.|.|-+.|+..+ +.+-+.|++||.|.+..-..... ....+ ..+-.|.|+++.+|.+|| .-||..|.+.
T Consensus 6 ~~wVtVFGfp~~~~-~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~--~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~ 81 (100)
T PF05172_consen 6 ETWVTVFGFPPSAS-NQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSG--GNWIHITYDNPLSAQRAL-QKNGTIFSGS 81 (100)
T ss_dssp CCEEEEE---GGGH-HHHHHHHHCCS-EECEEGGG----------E-CC--TTEEEEEESSHHHHHHHH-TTTTEEETTC
T ss_pred CeEEEEEccCHHHH-HHHHHHHHhcceEEEeecccccccccccccCCCC--CCEEEEECCCHHHHHHHH-HhCCeEEcCc
Confidence 56788889998855 45667899999998764110000 00011 139999999999999999 6799999764
Q ss_pred CCCCcceEEEee
Q 030465 151 DPDSKFLRLQFS 162 (177)
Q Consensus 151 ~~~~r~l~V~~a 162 (177)
--+-|.+.
T Consensus 82 ----~mvGV~~~ 89 (100)
T PF05172_consen 82 ----LMVGVKPC 89 (100)
T ss_dssp ----EEEEEEE-
T ss_pred ----EEEEEEEc
Confidence 13445555
No 124
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.56 E-value=0.081 Score=37.38 Aligned_cols=78 Identities=12% Similarity=0.206 Sum_probs=54.3
Q ss_pred CeEEEcCCCCCCCHHHHHHhhCCC-CCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 78 STLYVEGLPADSTKREVAHIFRPF-VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 78 ~tLfV~nLp~~~te~~L~~lF~~~-G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
..+.+...|..++-++|..+.+.+ ..|..++|+++. ..++-.+++.|.+.+.|..-.+.+||..+..-++ ..
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~-----~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEp--E~ 86 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG-----TPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEP--ET 86 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC-----CCceEEEEEEECCHHHHHHHHHHhCCCccCCCCC--ce
Confidence 344444555556666777666665 456778888764 2355689999999999999999999999976543 23
Q ss_pred eEEEee
Q 030465 157 LRLQFS 162 (177)
Q Consensus 157 l~V~~a 162 (177)
.+|-|.
T Consensus 87 ChvvfV 92 (110)
T PF07576_consen 87 CHVVFV 92 (110)
T ss_pred eEEEEE
Confidence 444443
No 125
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.52 E-value=0.00019 Score=65.43 Aligned_cols=68 Identities=18% Similarity=0.263 Sum_probs=57.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCee
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRM 147 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l 147 (177)
..++||.||+..+.+++|...|..++.+..+++.... ..++.+|+|||+|.+.+++.+|+...+...+
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~---n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~ 734 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHK---NEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF 734 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHh---hccccccceeeEeecCCchhhhhhhhhhhhh
Confidence 3579999999999999999999999988877766322 4577889999999999999999976665554
No 126
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.52 E-value=0.005 Score=55.05 Aligned_cols=62 Identities=13% Similarity=0.086 Sum_probs=55.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCC
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 150 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~ 150 (177)
..++||+|+...+.++-++.++..||-|.+++.+ + |+|++|.+......|+..++-..++++
T Consensus 40 ~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~--~----------fgf~~f~~~~~~~ra~r~~t~~~~~~~ 101 (668)
T KOG2253|consen 40 RDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD--K----------FGFCEFLKHIGDLRASRLLTELNIDDQ 101 (668)
T ss_pred CceeEecchhhhhhHHHHHHHHhhCCcchhhhhh--h----------hcccchhhHHHHHHHHHHhcccCCCcc
Confidence 6899999999999999999999999988776542 2 899999999999999999998888776
No 127
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.43 E-value=0.0084 Score=50.70 Aligned_cols=67 Identities=21% Similarity=0.338 Sum_probs=55.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCC-EEE--EEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCee
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVG-YKE--VRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRM 147 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~-i~~--v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l 147 (177)
..+|-+.+||++.+.++|-++|..|.. |.. |.++.+. .|++.|-|||+|.+.+.|..|....+.+..
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~----qGrPSGeAFIqm~nae~a~aaaqk~hk~~m 349 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG----QGRPSGEAFIQMRNAERARAAAQKCHKKLM 349 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC----CCCcChhhhhhhhhhHHHHHHHHHHHHhhc
Confidence 567888999999999999999998854 222 6666664 577888999999999999999988877665
No 128
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.42 E-value=0.0013 Score=52.47 Aligned_cols=61 Identities=16% Similarity=0.188 Sum_probs=47.7
Q ss_pred HHHhhC-CCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcceEEEeec
Q 030465 94 VAHIFR-PFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFSR 163 (177)
Q Consensus 94 L~~lF~-~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~l~V~~a~ 163 (177)
+...|+ +||.|+++.+..+. .-...|-+||.|...++|++|++.||+-.+.+ ++|..++..
T Consensus 85 ~f~E~~~kygEiee~~Vc~Nl----~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G-----~pi~ae~~p 146 (260)
T KOG2202|consen 85 VFTELEDKYGEIEELNVCDNL----GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNG-----RPIHAELSP 146 (260)
T ss_pred HHHHHHHHhhhhhhhhhhccc----chhhhhhhhhhcccHHHHHHHHHHHcCccccC-----CcceeeecC
Confidence 333344 89999988776654 23355789999999999999999999999965 589988864
No 129
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.24 E-value=0.023 Score=42.01 Aligned_cols=53 Identities=25% Similarity=0.412 Sum_probs=43.0
Q ss_pred HHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcceEEEee
Q 030465 93 EVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFS 162 (177)
Q Consensus 93 ~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~l~V~~a 162 (177)
+|-+.|.+||.+.-+|++.+ .-+|+|.+.+.|.+|+ .++|.++.+ +.|+|..-
T Consensus 52 ~ll~~~~~~GevvLvRfv~~-----------~mwVTF~dg~sALaal-s~dg~~v~g-----~~l~i~LK 104 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD-----------TMWVTFRDGQSALAAL-SLDGIQVNG-----RTLKIRLK 104 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT-----------CEEEEESSCHHHHHHH-HGCCSEETT-----EEEEEEE-
T ss_pred HHHHHHHhCCceEEEEEeCC-----------eEEEEECccHHHHHHH-ccCCcEECC-----EEEEEEeC
Confidence 67778889999998888765 3789999999999998 799999966 47888754
No 130
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.22 E-value=0.005 Score=49.30 Aligned_cols=63 Identities=21% Similarity=0.288 Sum_probs=54.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhC
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ 143 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~ 143 (177)
...|||.||+.-++.+.|.+-|+.||.|....++.|. .++..+=.+|+|.....|.+|+..+.
T Consensus 31 ~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~----r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 31 HAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD----RGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred cceEEEEecchhhhhHHHHHhhhhcCccchheeeecc----cccccccchhhhhcchhHHHHHHHhc
Confidence 3689999999999999999999999999877666664 35555678999999999999998884
No 131
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.11 E-value=0.001 Score=61.07 Aligned_cols=70 Identities=21% Similarity=0.219 Sum_probs=58.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCC
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 149 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~ 149 (177)
.+.|||++||+..+++.+|+..|..+|.|.+|.|-..+.+ + -.-|+||.|.+...+-.|+..+.+..|..
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~--~--esa~~f~~~~n~dmtp~ak~e~s~~~I~~ 440 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIK--T--ESAYAFVSLLNTDMTPSAKFEESGPLIGN 440 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCC--c--ccchhhhhhhccccCcccchhhcCCcccc
Confidence 4789999999999999999999999999999988655321 1 12399999999999999998888877754
No 132
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.41 E-value=0.053 Score=47.97 Aligned_cols=63 Identities=16% Similarity=0.244 Sum_probs=52.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhC--CCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHh-------CCCee
Q 030465 77 SSTLYVEGLPADSTKREVAHIFR--PFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSAL-------QGYRM 147 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~--~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l-------~g~~l 147 (177)
.|.|.+.-||..+-+|+++.||. .|-.+.+|.+-.+. -=||+|++..+|++|.+.| +|+.|
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~----------nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND----------NWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC----------ceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 46678899999999999999996 57889999987765 3599999999999998655 56666
Q ss_pred CC
Q 030465 148 DE 149 (177)
Q Consensus 148 ~~ 149 (177)
..
T Consensus 245 mA 246 (684)
T KOG2591|consen 245 MA 246 (684)
T ss_pred hh
Confidence 55
No 133
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.19 E-value=0.013 Score=54.00 Aligned_cols=74 Identities=19% Similarity=0.223 Sum_probs=60.9
Q ss_pred eEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcceE
Q 030465 79 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLR 158 (177)
Q Consensus 79 tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~l~ 158 (177)
+.++.|.+-..+...|..||++||.+.+...+++- -.|.|+|...+.|..|+++|+|.++.. .+-+-+
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~---------N~alvs~~s~~sai~a~dAl~gkevs~---~g~Ps~ 367 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL---------NMALVSFSSVESAILALDALQGKEVSV---TGAPSR 367 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc---------cchhhhhHHHHHHHHhhhhhcCCcccc---cCCcee
Confidence 34455555577888999999999999998776654 179999999999999999999999876 345799
Q ss_pred EEeecC
Q 030465 159 LQFSRN 164 (177)
Q Consensus 159 V~~a~~ 164 (177)
|.||+.
T Consensus 368 V~~ak~ 373 (1007)
T KOG4574|consen 368 VSFAKT 373 (1007)
T ss_pred EEeccc
Confidence 999975
No 134
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.10 E-value=0.12 Score=38.14 Aligned_cols=70 Identities=20% Similarity=0.233 Sum_probs=51.7
Q ss_pred CCeEEEcCCCCCCCH-HHH---HHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCC
Q 030465 77 SSTLYVEGLPADSTK-REV---AHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 152 (177)
Q Consensus 77 ~~tLfV~nLp~~~te-~~L---~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~ 152 (177)
-.||.|.-|..++.. +|| ...++.||+|.+|.+.-.. -|.|.|.|..+|=.|+.+++.....
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq----------savVvF~d~~SAC~Av~Af~s~~pg---- 151 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ----------SAVVVFKDITSACKAVSAFQSRAPG---- 151 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc----------eEEEEehhhHHHHHHHHhhcCCCCC----
Confidence 688999888776542 334 4456789999999875443 6999999999999999999874332
Q ss_pred CCcceEEEee
Q 030465 153 DSKFLRLQFS 162 (177)
Q Consensus 153 ~~r~l~V~~a 162 (177)
..+...|-
T Consensus 152 --tm~qCsWq 159 (166)
T PF15023_consen 152 --TMFQCSWQ 159 (166)
T ss_pred --ceEEeecc
Confidence 24776664
No 135
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.00 E-value=0.082 Score=43.40 Aligned_cols=65 Identities=18% Similarity=0.208 Sum_probs=49.0
Q ss_pred HHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcceEEEee
Q 030465 91 KREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFS 162 (177)
Q Consensus 91 e~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~l~V~~a 162 (177)
++++++..++||.|..|.|....+.-.. -..--||+|...++|.+|+--|||.-|.+ |.++.+|-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~d--eavRiFveF~r~e~aiKA~VdlnGRyFGG-----r~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPED--EAVRIFVEFERVESAIKAVVDLNGRYFGG-----RVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccc--hhheeeeeeccHHHHHHHHHhcCCceecc-----eeeeheec
Confidence 4467788899999998877666422111 11247999999999999999999999966 56777764
No 136
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.57 E-value=0.02 Score=47.52 Aligned_cols=82 Identities=17% Similarity=0.321 Sum_probs=58.8
Q ss_pred CCeEEEcCCCCCCCHHH-HH--HhhCCCCCEEEEEEeecCc-ccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCC
Q 030465 77 SSTLYVEGLPADSTKRE-VA--HIFRPFVGYKEVRLVIKES-KLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 152 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~-L~--~lF~~~G~i~~v~l~~~~~-~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~ 152 (177)
.+-+||-.|+..+.+++ |+ +.|.+||.|.+|.+..+.+ ....+-. .-++|+|...++|..||...+|..++++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~-~s~yITy~~~eda~rci~~v~g~~~dg~-- 153 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGT-CSVYITYEEEEDADRCIDDVDGFVDDGR-- 153 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCC-CcccccccchHhhhhHHHHhhhHHhhhh--
Confidence 46688989988765554 33 5788999999987766542 1111111 2389999999999999999999999774
Q ss_pred CCcceEEEeecC
Q 030465 153 DSKFLRLQFSRN 164 (177)
Q Consensus 153 ~~r~l~V~~a~~ 164 (177)
.|+..|..+
T Consensus 154 ---~lka~~gtt 162 (327)
T KOG2068|consen 154 ---ALKASLGTT 162 (327)
T ss_pred ---hhHHhhCCC
Confidence 566666544
No 137
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.16 E-value=0.088 Score=40.56 Aligned_cols=62 Identities=21% Similarity=0.234 Sum_probs=43.9
Q ss_pred CHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhC--CCeeCCCCCCCcceEEEeecCC
Q 030465 90 TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ--GYRMDEDDPDSKFLRLQFSRNP 165 (177)
Q Consensus 90 te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~--g~~l~~~~~~~r~l~V~~a~~~ 165 (177)
..+.|+++|..|+.+..+..+..- +=..|.|.+.+.|..|...|+ ++.+.+. .|+|.|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF---------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~-----~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF---------RRIRVVFESPESAQRARQLLHWDGTSFNGK-----RLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT---------TEEEEE-SSTTHHHHHHHTST--TSEETTE-----E-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC---------CEEEEEeCCHHHHHHHHHHhcccccccCCC-----ceEEEEcccc
Confidence 457899999999988877666543 137899999999999999999 8999775 6999998543
No 138
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=92.90 E-value=0.17 Score=44.76 Aligned_cols=87 Identities=15% Similarity=0.278 Sum_probs=58.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCC----------------------------CCCEEEEEEeecCcccCCCCcceEEEEE
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRP----------------------------FVGYKEVRLVIKESKLRGGDPLILCFVD 128 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~----------------------------~G~i~~v~l~~~~~~~~~g~~kg~afV~ 128 (177)
..++-|.|||..-+..+|.++... .+...-+.+..|- ..-...|||||.
T Consensus 361 Rtt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF---~nkcNvGYAFIN 437 (549)
T KOG4660|consen 361 RTTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDF---KNKCNVGYAFIN 437 (549)
T ss_pred hhhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhhhccccCccceEEecccc---ccccccceeEEe
Confidence 456778888877777777766642 1222223333332 223356899999
Q ss_pred ecCHHHHHHHHHHhCCCeeCCCCCCCcceEEEeecCCCC
Q 030465 129 FENPACAATALSALQGYRMDEDDPDSKFLRLQFSRNPGP 167 (177)
Q Consensus 129 f~~~~~A~~Ai~~l~g~~l~~~~~~~r~l~V~~a~~~~~ 167 (177)
|-+.+.+....+++||+.+..=+ ..+...+.||+..+.
T Consensus 438 m~sp~ai~~F~kAFnGk~W~~Fn-S~Kia~itYArIQGk 475 (549)
T KOG4660|consen 438 MTSPEAIIRFYKAFNGKKWEKFN-SEKIASITYARIQGK 475 (549)
T ss_pred ecCHHHHHHHHHHHcCCchhhhc-ceeeeeeehhhhhch
Confidence 99999999999999998775432 234688888876543
No 139
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.48 E-value=0.95 Score=39.31 Aligned_cols=71 Identities=20% Similarity=0.331 Sum_probs=59.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCC-CCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCC
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPF-VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 152 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~-G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~ 152 (177)
+..|+|--+|..+|-.||-.+...+ -.|.+++|+++. -..+-..+|.|.+..+|..=.+.+||..|..-++
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~-----~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~ 145 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG-----MPNRYMVLIKFRDQADADTFYEEFNGKQFNSLEP 145 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC-----CCceEEEEEEeccchhHHHHHHHcCCCcCCCCCc
Confidence 7889999999999999999888755 567889999864 2234578999999999999999999999976543
No 140
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.86 E-value=0.66 Score=41.44 Aligned_cols=85 Identities=16% Similarity=0.226 Sum_probs=62.6
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHhhCCC----CCEEEEEEeecCcc-------cCCCC----------------------
Q 030465 75 DASSTLYVEGLPAD-STKREVAHIFRPF----VGYKEVRLVIKESK-------LRGGD---------------------- 120 (177)
Q Consensus 75 ~~~~tLfV~nLp~~-~te~~L~~lF~~~----G~i~~v~l~~~~~~-------~~~g~---------------------- 120 (177)
..++.|-|.||.|+ +.-++|..+|+.| |.|.+|.|....-. ...|.
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 34788999999997 8888999999877 58888887664300 00011
Q ss_pred --------------cc-eEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcceEEEee
Q 030465 121 --------------PL-ILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFS 162 (177)
Q Consensus 121 --------------~k-g~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~l~V~~a 162 (177)
.+ -||.|+|.+...|....+.++|..+.-. +-.|-+.|-
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS---~~~~DLRFI 305 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS---ANKLDLRFI 305 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc---cceeeeeec
Confidence 11 3799999999999999999999999763 234555553
No 141
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=90.85 E-value=0.14 Score=42.18 Aligned_cols=70 Identities=19% Similarity=0.023 Sum_probs=57.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCC
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 149 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~ 149 (177)
.+++|++++.+.+.++++..++..+|....+.+.... ....+++++++.|...+.+..|+.....+.+..
T Consensus 88 ~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~---~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~ 157 (285)
T KOG4210|consen 88 SSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLE---DSLSSKGGLSVHFAGKSQFFAALEESGSKVLDG 157 (285)
T ss_pred cccccccccccchhhccccccchhhcCcccchhhhhc---cccccccceeeccccHHHHHHHHHhhhcccccc
Confidence 6789999999999999999999999987777665543 346688999999999999999997665555544
No 142
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.73 E-value=1.9 Score=35.74 Aligned_cols=62 Identities=19% Similarity=0.227 Sum_probs=45.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCC
Q 030465 78 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 150 (177)
Q Consensus 78 ~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~ 150 (177)
..|-|-..|+.-.. -|-.+|++||.|.+...- . +| -|-+|.|.+..+|++|| ..||..|++.
T Consensus 198 ~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~~-~-----ng---NwMhirYssr~~A~KAL-skng~ii~g~ 259 (350)
T KOG4285|consen 198 TWVTVFGFPPGQVS-IVLNLFSRCGEVVKHVTP-S-----NG---NWMHIRYSSRTHAQKAL-SKNGTIIDGD 259 (350)
T ss_pred ceEEEeccCccchh-HHHHHHHhhCeeeeeecC-C-----CC---ceEEEEecchhHHHHhh-hhcCeeeccc
Confidence 45666677765444 455689999999876443 1 12 29999999999999999 5788888774
No 143
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=90.54 E-value=0.15 Score=44.40 Aligned_cols=73 Identities=22% Similarity=0.322 Sum_probs=56.3
Q ss_pred CCeEEEcCCCCCC-CHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 77 SSTLYVEGLPADS-TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 77 ~~tLfV~nLp~~~-te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
.+.|-+.-.|+.. |-++|...|.+||.|..|.+-... --|.|+|.+..+|-.|. ..++..|+. |
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~---------~~a~vTF~t~aeag~a~-~s~~avlnn-----r 436 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS---------LHAVVTFKTRAEAGEAY-ASHGAVLNN-----R 436 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCch---------hhheeeeeccccccchh-ccccceecC-----c
Confidence 4566666666664 456899999999999999875541 15899999999997775 678888855 6
Q ss_pred ceEEEeecC
Q 030465 156 FLRLQFSRN 164 (177)
Q Consensus 156 ~l~V~~a~~ 164 (177)
.|+|-|-+.
T Consensus 437 ~iKl~whnp 445 (526)
T KOG2135|consen 437 FIKLFWHNP 445 (526)
T ss_pred eeEEEEecC
Confidence 899999754
No 144
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=90.43 E-value=1.3 Score=28.68 Aligned_cols=59 Identities=20% Similarity=0.322 Sum_probs=35.4
Q ss_pred CCCCHHHHHHhhCCCCCE-----EEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcceEEEe
Q 030465 87 ADSTKREVAHIFRPFVGY-----KEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQF 161 (177)
Q Consensus 87 ~~~te~~L~~lF~~~G~i-----~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~l~V~~ 161 (177)
..++..+|..++.....| -.|+|..+ |+||+-.. +.|+.+++.|++..+.+ ++++|+.
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-----------~S~vev~~-~~a~~v~~~l~~~~~~g-----k~v~ve~ 73 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-----------FSFVEVPE-EVAEKVLEALNGKKIKG-----KKVRVER 73 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS------------EEEEE-T-T-HHHHHHHHTT--SSS---------EEE
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee-----------EEEEEECH-HHHHHHHHHhcCCCCCC-----eeEEEEE
Confidence 458888999888876554 45666543 89999875 58899999999999976 4788876
Q ss_pred e
Q 030465 162 S 162 (177)
Q Consensus 162 a 162 (177)
|
T Consensus 74 A 74 (74)
T PF03880_consen 74 A 74 (74)
T ss_dssp -
T ss_pred C
Confidence 4
No 145
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=88.70 E-value=2.2 Score=27.22 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=39.4
Q ss_pred CCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCC
Q 030465 88 DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 149 (177)
Q Consensus 88 ~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~ 149 (177)
.++-++|+..+..|.- .. |..++ +| =||.|.+..+|++|....++..+..
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~--I~~d~----tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~ 60 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DR--IRDDR----TG-----FYIVFNDSKEAERCFRAEDGTLFFT 60 (66)
T ss_pred CccHHHHHHHHhcCCc-ce--EEecC----CE-----EEEEECChHHHHHHHHhcCCCEEEE
Confidence 4778899999999863 33 44454 32 4899999999999999999988854
No 146
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=86.28 E-value=0.027 Score=48.27 Aligned_cols=76 Identities=12% Similarity=0.250 Sum_probs=61.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
.++++-|.|+|+...++-|..|+.+||.+..|..+...+.. -.--|+|...+.+..||..|++..+...
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et------avvnvty~~~~~~~~ai~kl~g~Q~en~----- 147 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET------AVVNVTYSAQQQHRQAIHKLNGPQLENQ----- 147 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH------HHHHHHHHHHHHHHHHHHhhcchHhhhh-----
Confidence 36789999999999999999999999999988765433111 1345789999999999999999999765
Q ss_pred ceEEEee
Q 030465 156 FLRLQFS 162 (177)
Q Consensus 156 ~l~V~~a 162 (177)
.++|.|-
T Consensus 148 ~~k~~Yi 154 (584)
T KOG2193|consen 148 HLKVGYI 154 (584)
T ss_pred hhhcccC
Confidence 5888773
No 147
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=83.29 E-value=5 Score=33.14 Aligned_cols=49 Identities=16% Similarity=0.254 Sum_probs=35.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHH
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPA 133 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~ 133 (177)
..-||++||+.++.-.||+..+.+-+.+- .+|-+.- +.+-||++|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswkg-------~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISWKG-------HFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCc-eeEeeec-------CCcceeEecCCcc
Confidence 34599999999999999999998766442 3343332 2356999998854
No 148
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=82.11 E-value=0.58 Score=37.08 Aligned_cols=69 Identities=20% Similarity=0.244 Sum_probs=58.8
Q ss_pred CCeEEEcC----CCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCC
Q 030465 77 SSTLYVEG----LPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 149 (177)
Q Consensus 77 ~~tLfV~n----Lp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~ 149 (177)
..+++.|+ |...++++.+.+.|+.-+.+..+++-.+. .++++-+.|+++......-.++..+++..+.-
T Consensus 80 q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~----d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~ 152 (267)
T KOG4454|consen 80 QRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN----DGRNRNFGFVTYQRLCAVPFALDLYQGLELFQ 152 (267)
T ss_pred hcccccCCCcchhhhhcchhhheeeecccCCCCCccccccc----cCCccCccchhhhhhhcCcHHhhhhcccCcCC
Confidence 46788888 88889999999999999999999987765 46677799999999999999998888877754
No 149
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.41 E-value=4.2 Score=35.01 Aligned_cols=55 Identities=16% Similarity=0.255 Sum_probs=44.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCE-EEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHH
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGY-KEVRLVIKESKLRGGDPLILCFVDFENPACAATALSA 141 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i-~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~ 141 (177)
...|-|-++|...-.+||-.+|+.|+.- -+|+++.+. .+|-.|.+...|..|+..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt----------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT----------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc----------eeEEeecchHHHHHHhhc
Confidence 3678899999999899999999998542 345566554 799999999999999854
No 150
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=77.64 E-value=0.45 Score=40.64 Aligned_cols=66 Identities=17% Similarity=0.104 Sum_probs=52.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCC
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 150 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~ 150 (177)
.+||+|++|+..+...++-++|..+|.+...++.... ..-+|-|+|........|+ .++|..+.-+
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~-------~s~~c~~sf~~qts~~hal-r~~gre~k~q 216 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTASKS-------RSSSCSHSFRKQTSSKHAL-RSHGRERKRQ 216 (479)
T ss_pred HhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccC-------CCcchhhhHhhhhhHHHHH-Hhcchhhhhh
Confidence 5789999999999999999999999998877665432 2237789999888888777 4677666544
No 151
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=72.97 E-value=2.7 Score=29.88 Aligned_cols=49 Identities=14% Similarity=0.219 Sum_probs=26.5
Q ss_pred eEEEcCCCCC---------CCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHH
Q 030465 79 TLYVEGLPAD---------STKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPA 133 (177)
Q Consensus 79 tLfV~nLp~~---------~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~ 133 (177)
++.|-|++.+ ++.++|++.|+.|..++ ++.+..+ .-+.|+++|+|...-
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~-----~gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK-----QGHTGFAIVEFNKDW 67 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET-----TEEEEEEEEE--SSH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC-----CCCcEEEEEEECCCh
Confidence 4566777653 45678999999998765 6666654 235689999998743
No 152
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=72.76 E-value=2.7 Score=32.27 Aligned_cols=73 Identities=18% Similarity=0.271 Sum_probs=49.3
Q ss_pred CeEEEcCCCCCCCHH-----HHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCC
Q 030465 78 STLYVEGLPADSTKR-----EVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 152 (177)
Q Consensus 78 ~tLfV~nLp~~~te~-----~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~ 152 (177)
.++++.+|+.++-.+ ....+|.+|-.....+++.. .+.--|.|.+.+.|..|...++.+.|.+++
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs---------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~- 80 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS---------FRRVRINFSNPEAAADARIKLHSTSFNGKN- 80 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh---------hceeEEeccChhHHHHHHHHhhhcccCCCc-
Confidence 568888888764322 33456665544333333332 236778999999999999999999998763
Q ss_pred CCcceEEEeec
Q 030465 153 DSKFLRLQFSR 163 (177)
Q Consensus 153 ~~r~l~V~~a~ 163 (177)
.++.-|+.
T Consensus 81 ---~~k~yfaQ 88 (193)
T KOG4019|consen 81 ---ELKLYFAQ 88 (193)
T ss_pred ---eEEEEEcc
Confidence 47766664
No 153
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.30 E-value=1.1 Score=38.91 Aligned_cols=77 Identities=10% Similarity=-0.122 Sum_probs=54.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcce
Q 030465 78 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 157 (177)
Q Consensus 78 ~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~l 157 (177)
...|+..||..+++++|.-+|+.|+-|..+.+-+.. .++..+..+||+-.. .++..+|.-+.-..+.+. .+
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~---~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~-----~~ 74 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYV---NGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFES-----QD 74 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccc---cCCcceeeeeeeeec-cCcccccCHHHHhhhhhh-----hh
Confidence 456788999999999999999999988877665544 455666788887654 566667766665556553 35
Q ss_pred EEEeec
Q 030465 158 RLQFSR 163 (177)
Q Consensus 158 ~V~~a~ 163 (177)
+|..++
T Consensus 75 r~~~~~ 80 (572)
T KOG4365|consen 75 RKAVSP 80 (572)
T ss_pred hhhcCc
Confidence 655553
No 154
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=67.14 E-value=0.8 Score=40.74 Aligned_cols=71 Identities=17% Similarity=0.253 Sum_probs=53.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCC
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 150 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~ 150 (177)
.++||+.|++++++-++|..++..+-.+..+-+-..... -.-.-+..|+|+-.-.-..|+.+||+..+...
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~ae---k~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAE---KNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHH---HHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 578999999999999999999999877766554332200 01122678999988888889999999888653
No 155
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=67.00 E-value=10 Score=29.03 Aligned_cols=38 Identities=26% Similarity=0.402 Sum_probs=32.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecC
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 113 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~ 113 (177)
....+++.+++..++..++..+|..++.+....+....
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (306)
T COG0724 224 KSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSK 261 (306)
T ss_pred ccceeeccccccccchhHHHHhccccccceeeeccCCC
Confidence 37889999999999999999999999999777665544
No 156
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=64.50 E-value=4.4 Score=27.40 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhh
Q 030465 77 SSTLYVEGLPADSTKREVAHIF 98 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF 98 (177)
.++|.|.|||..++|++|++.+
T Consensus 52 ~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 52 KRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CCEEEEeCCCCCCChhhheeeE
Confidence 5889999999999999999755
No 157
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=62.31 E-value=22 Score=30.91 Aligned_cols=85 Identities=20% Similarity=0.348 Sum_probs=58.2
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHhhCCC----CCEEEEEEeecC---cc-------------------c-----------
Q 030465 75 DASSTLYVEGLPAD-STKREVAHIFRPF----VGYKEVRLVIKE---SK-------------------L----------- 116 (177)
Q Consensus 75 ~~~~tLfV~nLp~~-~te~~L~~lF~~~----G~i~~v~l~~~~---~~-------------------~----------- 116 (177)
++++.|-|-||.|+ +...+|..+|+.| |.+..|.|.+.. .+ .
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn~ 223 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDNV 223 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCccc
Confidence 34788999999996 7888999999866 566667655432 00 0
Q ss_pred ----CCCC------c-------------------ceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcceEEEee
Q 030465 117 ----RGGD------P-------------------LILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFS 162 (177)
Q Consensus 117 ----~~g~------~-------------------kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~l~V~~a 162 (177)
.-|+ - --||.|++.+...+.......+|..+... ...+-+.|.
T Consensus 224 ~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~s---an~~DLRfv 295 (622)
T COG5638 224 FSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENS---ANVLDLRFV 295 (622)
T ss_pred hhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccc---cceeeeeec
Confidence 0000 0 12799999999999999999999888653 234555554
No 158
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=61.80 E-value=11 Score=32.28 Aligned_cols=73 Identities=18% Similarity=0.313 Sum_probs=48.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEE-EEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCC
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKE-VRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 150 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~-v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~ 150 (177)
-+.+-|.+||+..++++|.+-...|-.-.. ..+.......... -.+.+||.|...++...=...++|+.+.+.
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~-~ysrayinFk~~~dv~ef~~~f~g~ifld~ 80 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNH-KYSRAYINFKNPEDVEEFRRRFDGYIFLDN 80 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhh-hhhhhhhccccHHHHHHHHhhCCceEEecC
Confidence 467889999999999988877666533221 1222111000111 135799999999998888888999998875
No 159
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=58.68 E-value=5.7 Score=22.22 Aligned_cols=16 Identities=13% Similarity=0.407 Sum_probs=10.6
Q ss_pred CCCCHHHHHHhhCCCC
Q 030465 87 ADSTKREVAHIFRPFV 102 (177)
Q Consensus 87 ~~~te~~L~~lF~~~G 102 (177)
.++++++|+++|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4789999999998764
No 160
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=58.17 E-value=5.9 Score=31.72 Aligned_cols=31 Identities=16% Similarity=0.283 Sum_probs=27.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEE
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEV 107 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v 107 (177)
..+||+-|+|..+|++.|.++.+++|.+..+
T Consensus 40 Kd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 40 KDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 6889999999999999999999998865544
No 161
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=52.22 E-value=36 Score=21.46 Aligned_cols=21 Identities=10% Similarity=0.067 Sum_probs=16.3
Q ss_pred HHHHHhhCCCCCEEEEEEeec
Q 030465 92 REVAHIFRPFVGYKEVRLVIK 112 (177)
Q Consensus 92 ~~L~~lF~~~G~i~~v~l~~~ 112 (177)
.+|+++|++.|.|.-+-+...
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~ 29 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPY 29 (62)
T ss_pred HHHHHHHHhcCcEEEEEEccc
Confidence 579999999999976655433
No 162
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=45.88 E-value=40 Score=27.97 Aligned_cols=60 Identities=12% Similarity=0.113 Sum_probs=44.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCccc----CCCCcceEEEEEecCHHHHH
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKL----RGGDPLILCFVDFENPACAA 136 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~----~~g~~kg~afV~f~~~~~A~ 136 (177)
++.|.+.|+..+++-.++-..|.+||.|++|.++.+..+. ...+......+.|-+.+.+.
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CL 78 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICL 78 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHH
Confidence 4678889999999999999999999999999998875110 11223346778888766543
No 163
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=42.19 E-value=75 Score=18.95 Aligned_cols=45 Identities=18% Similarity=0.355 Sum_probs=34.6
Q ss_pred eEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCH
Q 030465 79 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENP 132 (177)
Q Consensus 79 tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~ 132 (177)
||.|.||.-.--...++..+...-+|.++.+-... +-.-|+|...
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~---------~~v~v~~~~~ 45 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET---------KTVTVTYDPD 45 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT---------TEEEEEESTT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC---------CEEEEEEecC
Confidence 57788887777778899999999889988886543 2577888754
No 164
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=37.71 E-value=73 Score=21.22 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=20.0
Q ss_pred CEEEEEEeecCcccCCCCcceEEEEEecC
Q 030465 103 GYKEVRLVIKESKLRGGDPLILCFVDFEN 131 (177)
Q Consensus 103 ~i~~v~l~~~~~~~~~g~~kg~afV~f~~ 131 (177)
.|.+|+|..-. ..++.++||=|+|++
T Consensus 2 ~itdVri~~~~---~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIE---PEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETT---SSSSEEEEEEEEETT
T ss_pred ccEEEEEEEec---CCCCEEEEEEEEECC
Confidence 36778887665 348899999999987
No 165
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=37.26 E-value=66 Score=22.01 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=30.0
Q ss_pred CEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcceEEEeec
Q 030465 103 GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFSR 163 (177)
Q Consensus 103 ~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~l~V~~a~ 163 (177)
.|++|++..-. ..|+.++||-|+|++. - ..++..+-..+ ..|.|.+-.
T Consensus 2 ~ITdVri~~~~---~~g~lka~asit~dd~-f------vI~~ikVieg~---~GlFVaMPs 49 (94)
T PRK13259 2 EVTDVRLRKVN---TEGRMKAIVSITFDNE-F------VVHDIRVIEGN---NGLFIAMPS 49 (94)
T ss_pred eEEEEEEEEeC---CCCcEEEEEEEEECCE-E------EEeeeEEEECC---CCeEEECcC
Confidence 36777776654 4578899999999981 1 34555544421 247777543
No 166
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=35.61 E-value=43 Score=27.23 Aligned_cols=34 Identities=12% Similarity=0.157 Sum_probs=25.7
Q ss_pred CeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEee
Q 030465 78 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI 111 (177)
Q Consensus 78 ~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~ 111 (177)
....|+|||+.+|..-|..+++..-.+....++.
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~ 129 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVLMV 129 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEEEe
Confidence 4567999999999999999998765554444443
No 167
>PF14893 PNMA: PNMA
Probab=34.87 E-value=24 Score=29.75 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhC
Q 030465 77 SSTLYVEGLPADSTKREVAHIFR 99 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~ 99 (177)
-+.|.|.+||.+|++++|++.+.
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~ 40 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQ 40 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHH
Confidence 57899999999999999998775
No 168
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=31.94 E-value=95 Score=20.81 Aligned_cols=48 Identities=13% Similarity=0.088 Sum_probs=30.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEec
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFE 130 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~ 130 (177)
..-+||+|++..+-|.-.+.+.+..+.=. +.++... ....||.|-++.
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~-a~m~~~~-----~neqG~~~~t~G 72 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGS-AVMVWSD-----NNEQGFDFRTLG 72 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCcc-EEEEEcc-----CCCCCEEEEEeC
Confidence 35599999999988887776666543322 3344332 114579988874
No 169
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=31.75 E-value=46 Score=27.55 Aligned_cols=87 Identities=21% Similarity=0.403 Sum_probs=50.6
Q ss_pred CCeEEEcCCCCC------------CCHHHHHHhhCCCCCEEEEEEeecC--cccCCCCcc-----eE---------EEEE
Q 030465 77 SSTLYVEGLPAD------------STKREVAHIFRPFVGYKEVRLVIKE--SKLRGGDPL-----IL---------CFVD 128 (177)
Q Consensus 77 ~~tLfV~nLp~~------------~te~~L~~lF~~~G~i~~v~l~~~~--~~~~~g~~k-----g~---------afV~ 128 (177)
..|||+..||-. -+|+-|+..|+.||.|..|.|..-. ....+|+.. || |||.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 467888877731 4677899999999999988764321 000223332 33 2344
Q ss_pred ecCHHHHHHHHHHhCCCeeCCCCCCCc----ceEEEeecC
Q 030465 129 FENPACAATALSALQGYRMDEDDPDSK----FLRLQFSRN 164 (177)
Q Consensus 129 f~~~~~A~~Ai~~l~g~~l~~~~~~~r----~l~V~~a~~ 164 (177)
|-.-..-..|+..|.|..+.-.. .++ -++|+|.++
T Consensus 229 fmeykgfa~amdalr~~k~akk~-d~~ffqanvkvdfdrs 267 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKLAKKG-DDGFFQANVKVDFDRS 267 (445)
T ss_pred HHHHHhHHHHHHHHhcchHHhhc-CCcccccccccccchh
Confidence 44445556677777776653321 111 367777654
No 170
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=31.44 E-value=1.4e+02 Score=19.55 Aligned_cols=57 Identities=14% Similarity=0.167 Sum_probs=37.4
Q ss_pred eEEEcCCCCCCCHHHHHHhhCCCC--CEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHH
Q 030465 79 TLYVEGLPADSTKREVAHIFRPFV--GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSA 141 (177)
Q Consensus 79 tLfV~nLp~~~te~~L~~lF~~~G--~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~ 141 (177)
.-|+-.++.+.|..||+..++..- .+.+|+.+..+ .+. -=|||.+...+.|...-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~----~~~--KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP----RGE--KKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC----CCc--eEEEEEECCCCcHHHHHHh
Confidence 356667889999999998777642 44555544432 110 1499999888877765443
No 171
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=31.31 E-value=1.3e+02 Score=20.02 Aligned_cols=57 Identities=14% Similarity=0.141 Sum_probs=37.7
Q ss_pred eEEEcCCCCCCCHHHHHHhhCCCC--CEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHH
Q 030465 79 TLYVEGLPADSTKREVAHIFRPFV--GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSA 141 (177)
Q Consensus 79 tLfV~nLp~~~te~~L~~lF~~~G--~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~ 141 (177)
.-|+-.++.+.+..+|+..++.+- .|.+|+.+... .+. -=|||.+....+|......
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~----~~~--KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP----KGE--KKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC----CCc--EEEEEEeCCCCcHHHHHHh
Confidence 345556788899999888887642 45566554433 111 1499999998888776543
No 172
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=29.43 E-value=79 Score=26.91 Aligned_cols=29 Identities=28% Similarity=0.280 Sum_probs=20.1
Q ss_pred CCCCCCCHHHHHHhhCCC-CCEEEEEEeec
Q 030465 84 GLPADSTKREVAHIFRPF-VGYKEVRLVIK 112 (177)
Q Consensus 84 nLp~~~te~~L~~lF~~~-G~i~~v~l~~~ 112 (177)
.|...+|.+||+++|.+| ..-.-|+|+..
T Consensus 252 ~l~~~~t~~~i~~~y~~~Y~~epfVrv~~~ 281 (349)
T COG0002 252 KLKDLVTLEELHAAYEEFYAGEPFVRVVPE 281 (349)
T ss_pred ecCCCCCHHHHHHHHHHHhCCCCeEEEecC
Confidence 455569999999999865 44445666653
No 173
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=28.87 E-value=1.1e+02 Score=21.95 Aligned_cols=48 Identities=13% Similarity=0.224 Sum_probs=26.5
Q ss_pred CCCHHHHHHhhCCC-CCEEE-EEEeecCcccCCCCcceEEEEEecCHHHHH
Q 030465 88 DSTKREVAHIFRPF-VGYKE-VRLVIKESKLRGGDPLILCFVDFENPACAA 136 (177)
Q Consensus 88 ~~te~~L~~lF~~~-G~i~~-v~l~~~~~~~~~g~~kg~afV~f~~~~~A~ 136 (177)
.++.+||++-+++. -.-.+ |.+.--+++.-+|++.|||.| |++.+.|.
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~ak 83 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAK 83 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHH
Confidence 57788888766543 11122 222223333356788899976 55554443
No 174
>PHA01632 hypothetical protein
Probab=28.43 E-value=56 Score=20.15 Aligned_cols=20 Identities=20% Similarity=0.483 Sum_probs=16.2
Q ss_pred EEcCCCCCCCHHHHHHhhCC
Q 030465 81 YVEGLPADSTKREVAHIFRP 100 (177)
Q Consensus 81 fV~nLp~~~te~~L~~lF~~ 100 (177)
.|..+|..-||++|+.++.+
T Consensus 20 lieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 20 LIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred ehhhcCCCCCHHHHHHHHHH
Confidence 34689999999999987753
No 175
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=28.05 E-value=2.1e+02 Score=26.27 Aligned_cols=68 Identities=7% Similarity=0.104 Sum_probs=48.8
Q ss_pred CeEEEcCC--CCCCCHHHHHHhhCCCCCEE-----EEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCC
Q 030465 78 STLYVEGL--PADSTKREVAHIFRPFVGYK-----EVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 150 (177)
Q Consensus 78 ~tLfV~nL--p~~~te~~L~~lF~~~G~i~-----~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~ 150 (177)
.++|| |+ -..++..+|..++..-+.|. .|+|..+ |.||+... ..|...++.|++..+.++
T Consensus 487 ~~~~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~-----------~s~v~~~~-~~~~~~~~~~~~~~~~~~ 553 (629)
T PRK11634 487 QLYRI-EVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAS-----------HSTIELPK-GMPGEVLQHFTRTRILNK 553 (629)
T ss_pred EEEEE-ecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeCC-----------ceEEEcCh-hhHHHHHHHhccccccCC
Confidence 44665 44 34688899988887666554 3455432 89999865 568889999999999764
Q ss_pred CCCCcceEEEeec
Q 030465 151 DPDSKFLRLQFSR 163 (177)
Q Consensus 151 ~~~~r~l~V~~a~ 163 (177)
.|.|+.++
T Consensus 554 -----~~~~~~~~ 561 (629)
T PRK11634 554 -----PMNMQLLG 561 (629)
T ss_pred -----ceEEEECC
Confidence 68898875
No 176
>PRK11901 hypothetical protein; Reviewed
Probab=26.63 E-value=1.1e+02 Score=25.69 Aligned_cols=52 Identities=15% Similarity=0.190 Sum_probs=32.8
Q ss_pred CCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEE--EEEecCHHHHHHHHHHhCC
Q 030465 88 DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILC--FVDFENPACAATALSALQG 144 (177)
Q Consensus 88 ~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~a--fV~f~~~~~A~~Ai~~l~g 144 (177)
.-+++.|+.+..+++ +..+.+.... +.|+.- |. |=.|.+.++|..|+..|--
T Consensus 253 as~~~~L~~f~~~~~-L~~~~VYqT~---RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 253 ASRSDTLNAYAKKQN-LSHYHVYETK---RDGKPW-YVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCCHHHHHHHHHHcC-cCceEEEEEE---ECCceE-EEEEecCcCCHHHHHHHHHhCCH
Confidence 456788888877664 4445544433 234332 22 2378899999999988754
No 177
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=26.16 E-value=14 Score=31.31 Aligned_cols=47 Identities=11% Similarity=-0.038 Sum_probs=32.4
Q ss_pred HHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCC
Q 030465 92 REVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY 145 (177)
Q Consensus 92 ~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~ 145 (177)
..+.+++.+.|.+..-.+.+. .+.|.+||..-.+++++++++.|++.
T Consensus 276 p~iF~~i~~~G~v~~~EM~rt-------FNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 276 PPIFKWLQKAGNVEREEMYRT-------FNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred cHHHHHHHHhcCCCHHHHHHH-------hcCccceEEEEcHHHHHHHHHHHHhc
Confidence 445555566666554333221 23468999999999999999999875
No 178
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=26.08 E-value=68 Score=25.85 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.1
Q ss_pred eEEEcCCCCCCCHHHHHHhhCC
Q 030465 79 TLYVEGLPADSTKREVAHIFRP 100 (177)
Q Consensus 79 tLfV~nLp~~~te~~L~~lF~~ 100 (177)
.+.|+|+|+.++..-|..++..
T Consensus 107 ~~vv~NlPY~iss~ii~~~l~~ 128 (272)
T PRK00274 107 LKVVANLPYNITTPLLFHLLEE 128 (272)
T ss_pred ceEEEeCCccchHHHHHHHHhc
Confidence 5789999999999988888864
No 179
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=26.04 E-value=2.9e+02 Score=24.51 Aligned_cols=63 Identities=14% Similarity=0.118 Sum_probs=39.2
Q ss_pred CeEEEcCCCCCCCHHHHHHhhC----CCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCC
Q 030465 78 STLYVEGLPADSTKREVAHIFR----PFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQG 144 (177)
Q Consensus 78 ~tLfV~nLp~~~te~~L~~lF~----~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g 144 (177)
..+-++.-..+.+.-+|..+|. .+|-|+++.+..... -+.....++.|.+.++|..++..+..
T Consensus 190 ~i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~----p~~~~~~~~~f~~~~~a~~~~~~~~~ 256 (499)
T PRK11230 190 EALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPK----PPVARVLLASFDSVEKAGLAVGDIIA 256 (499)
T ss_pred cEEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcC----CcceEEEEEECCCHHHHHHHHHHHHh
Confidence 4444443222333457777776 677788776655431 11234678899999999999887643
No 180
>KOG1134 consensus Uncharacterized conserved protein [General function prediction only]
Probab=25.21 E-value=1.1e+02 Score=28.85 Aligned_cols=38 Identities=29% Similarity=0.342 Sum_probs=28.8
Q ss_pred cceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcceEEEeecCC
Q 030465 121 PLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFSRNP 165 (177)
Q Consensus 121 ~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~l~V~~a~~~ 165 (177)
..+.|||+|++...|+.|.+..+..... ...+++|-.|
T Consensus 304 ~~~~aFVtf~sr~~A~~~aq~~~~~~~~-------~w~~~~APeP 341 (728)
T KOG1134|consen 304 PLPAAFVTFKSRYGAAVAAQTQQSLNPT-------KWLTEFAPEP 341 (728)
T ss_pred CCceEEEEEEeeHHHHHHHHhhhcCCCC-------ceEEEecCCc
Confidence 4469999999999999998875544443 4888888444
No 181
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=24.75 E-value=93 Score=24.64 Aligned_cols=24 Identities=13% Similarity=0.109 Sum_probs=20.4
Q ss_pred eEEEcCCCCCCCHHHHHHhhCCCC
Q 030465 79 TLYVEGLPADSTKREVAHIFRPFV 102 (177)
Q Consensus 79 tLfV~nLp~~~te~~L~~lF~~~G 102 (177)
-+.|+|||+.++.+.|..++..++
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~~ 119 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKPK 119 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccCC
Confidence 478999999999999999997443
No 182
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=24.23 E-value=1.1e+02 Score=21.01 Aligned_cols=50 Identities=10% Similarity=0.045 Sum_probs=29.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCH
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENP 132 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~ 132 (177)
..-+||++++..+-|.-.+.+-+.++. -++.++... .. ..||.|-++.+.
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~-G~avmv~~~----~~-eqG~~~~t~G~~ 76 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEE-GNVVMAWAT----NT-ESGFEFQTFGEN 76 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCC-CcEEEEEcC----CC-CCCcEEEecCCC
Confidence 356999999988777655555554432 123333322 11 237999888763
No 183
>PF15063 TC1: Thyroid cancer protein 1
Probab=23.72 E-value=37 Score=22.32 Aligned_cols=28 Identities=7% Similarity=0.026 Sum_probs=23.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCE
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGY 104 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i 104 (177)
.++--+.||=.+++.++|..||..-|..
T Consensus 25 ~RKkasaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 25 SRKKASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred HhhhhhhhhhhccCHHHHHHHHHHccch
Confidence 4566678999999999999999988864
No 184
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=23.49 E-value=76 Score=26.14 Aligned_cols=27 Identities=11% Similarity=0.156 Sum_probs=20.7
Q ss_pred eEEEcCCCCCCCHHHHHHhhCCCCCEE
Q 030465 79 TLYVEGLPADSTKREVAHIFRPFVGYK 105 (177)
Q Consensus 79 tLfV~nLp~~~te~~L~~lF~~~G~i~ 105 (177)
.+.|+|||+.++...|..+++....+.
T Consensus 103 d~VvaNlPY~Istpil~~ll~~~~~~~ 129 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAHRPLFR 129 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhcCCCCc
Confidence 477899999999999988886533333
No 185
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=23.48 E-value=1.2e+02 Score=19.21 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=20.3
Q ss_pred CCHHHHHHhhCCCCCEEEEEEeecC
Q 030465 89 STKREVAHIFRPFVGYKEVRLVIKE 113 (177)
Q Consensus 89 ~te~~L~~lF~~~G~i~~v~l~~~~ 113 (177)
.-|.+|+..|-+-..|.++.|..++
T Consensus 30 ~~e~eler~fl~~P~v~e~~l~EKK 54 (64)
T PF13046_consen 30 LVEVELERHFLPLPEVKEVALYEKK 54 (64)
T ss_pred HHHHHhhhhccCCCCceEEEEEEEE
Confidence 4566788888888899999888876
No 186
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=23.11 E-value=2.3e+02 Score=19.82 Aligned_cols=39 Identities=10% Similarity=0.313 Sum_probs=24.8
Q ss_pred HHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHH
Q 030465 93 EVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAAT 137 (177)
Q Consensus 93 ~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~ 137 (177)
+|..+++.+| |....|..+. -...-|+++++.|.+..-.
T Consensus 28 E~~a~lk~ag-i~nYSIfLde-----~~n~lFgy~E~~d~~a~m~ 66 (105)
T COG3254 28 ELLALLKEAG-IRNYSIFLDE-----EENLLFGYWEYEDFEADMA 66 (105)
T ss_pred HHHHHHHHcC-CceeEEEecC-----CcccEEEEEEEcChHHHHH
Confidence 5667777776 6666666554 1233599999995544443
No 187
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=23.06 E-value=2.2e+02 Score=19.55 Aligned_cols=48 Identities=15% Similarity=0.170 Sum_probs=23.6
Q ss_pred CCCHHHHHHhhCC-CCCEEE-EEEeecCcccCCCCcceEEEEEecCHHHHH
Q 030465 88 DSTKREVAHIFRP-FVGYKE-VRLVIKESKLRGGDPLILCFVDFENPACAA 136 (177)
Q Consensus 88 ~~te~~L~~lF~~-~G~i~~-v~l~~~~~~~~~g~~kg~afV~f~~~~~A~ 136 (177)
+.+..+|++-+.. |+.=.+ |.+..-++..-.+++.|||.| |++.+.|.
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~k 79 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERAR 79 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHH
Confidence 5667777765543 232112 222222333334667777766 55555443
No 188
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=22.66 E-value=45 Score=28.91 Aligned_cols=61 Identities=15% Similarity=0.136 Sum_probs=44.0
Q ss_pred CCeEEEcCCCCCCCHH--------HHHHhhCC--CCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHH
Q 030465 77 SSTLYVEGLPADSTKR--------EVAHIFRP--FVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALS 140 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~--------~L~~lF~~--~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~ 140 (177)
.+.+|+.+...+.+.+ +|...|.. .+.+..++..++. ..-..+|..|++|.....+++...
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~---~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDW---LNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhh---hhccccCcccccccChHHHHHHhc
Confidence 3568888887765555 89999988 4666666555443 334566788999999999998763
No 189
>PF07237 DUF1428: Protein of unknown function (DUF1428); InterPro: IPR009874 This family consists of several hypothetical bacterial and one archaeal sequence of around 120 residues in length. The function of this family is unknown.; PDB: 2OKQ_A.
Probab=22.38 E-value=2.7e+02 Score=19.32 Aligned_cols=50 Identities=12% Similarity=0.267 Sum_probs=32.4
Q ss_pred HHHhhCCCCCEEEEEEeecCc------------ccCCCCcceEEEEEecCHHHHHHHHHHhC
Q 030465 94 VAHIFRPFVGYKEVRLVIKES------------KLRGGDPLILCFVDFENPACAATALSALQ 143 (177)
Q Consensus 94 L~~lF~~~G~i~~v~l~~~~~------------~~~~g~~kg~afV~f~~~~~A~~Ai~~l~ 143 (177)
...+|..||.+..+...-+.- +...+..-.|.+|+|.|.+..+++...+.
T Consensus 25 a~~vf~e~GAl~~vE~wgdDvp~G~~TsF~~Av~a~~~E~VVFSWi~wpska~rD~~~~k~m 86 (103)
T PF07237_consen 25 AAEVFKEHGALRVVECWGDDVPDGKVTSFPRAVKAKPDETVVFSWIEWPSKATRDAANAKMM 86 (103)
T ss_dssp HHHHHHHTT-SEEEEEEEEE----SS--HHHHTT--TTEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEEeecCcCCcCccCCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHhh
Confidence 457888999877665444321 11123444699999999999998886653
No 190
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=22.24 E-value=1.2e+02 Score=22.22 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=19.3
Q ss_pred CeEEEcCCCCCCCHHHHHHhhCC
Q 030465 78 STLYVEGLPADSTKREVAHIFRP 100 (177)
Q Consensus 78 ~tLfV~nLp~~~te~~L~~lF~~ 100 (177)
.-+.|+|+|+.++.+.|..+++.
T Consensus 78 ~d~vi~n~Py~~~~~~i~~~l~~ 100 (169)
T smart00650 78 PYKVVGNLPYNISTPILFKLLEE 100 (169)
T ss_pred CCEEEECCCcccHHHHHHHHHhc
Confidence 34678999999999999988865
No 191
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=22.21 E-value=57 Score=26.14 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=20.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhC
Q 030465 77 SSTLYVEGLPADSTKREVAHIFR 99 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~ 99 (177)
...++|+|||+.++..-|..++.
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHH
T ss_pred CceEEEEEecccchHHHHHHHhh
Confidence 46789999999999999999887
No 192
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=21.90 E-value=1.3e+02 Score=20.51 Aligned_cols=55 Identities=18% Similarity=0.146 Sum_probs=32.6
Q ss_pred CCCCCCHHHHHHhhCCCCCE-EEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCe
Q 030465 85 LPADSTKREVAHIFRPFVGY-KEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYR 146 (177)
Q Consensus 85 Lp~~~te~~L~~lF~~~G~i-~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~ 146 (177)
+-+.+++..|..-|-..|.- +...+..|- =+.+|.|+|.+.+.+..|.+.|-...
T Consensus 20 ~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD~-------W~pm~vv~f~~~~~g~~~yq~Lrelr 75 (91)
T PF12829_consen 20 QTPNLDNNQILKQFPFPGKKNKPPSLRKDY-------WRPMCVVNFPNYEVGVSAYQKLRELR 75 (91)
T ss_pred cCcccChhHHHHhccCCCcccCCchhcccc-------ceEeEEEECCChHHHHHHHHHHHHHH
Confidence 34556777666555443321 111222221 23599999999999999988775433
No 193
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=21.72 E-value=2.4e+02 Score=20.59 Aligned_cols=48 Identities=15% Similarity=0.241 Sum_probs=24.6
Q ss_pred CCCHHHHHHhhCCCCC---EEEEEEeecCcccCCCCcceEEEEEecCHHHHH
Q 030465 88 DSTKREVAHIFRPFVG---YKEVRLVIKESKLRGGDPLILCFVDFENPACAA 136 (177)
Q Consensus 88 ~~te~~L~~lF~~~G~---i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~ 136 (177)
..+-.||++-+...-. ...|.+..-++..-.|++.|||.| |++.+.+.
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~k 85 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALK 85 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHH
Confidence 5677788776654322 122222222222235677788866 55544443
No 194
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=21.71 E-value=2.2e+02 Score=17.85 Aligned_cols=55 Identities=20% Similarity=0.274 Sum_probs=38.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCH-HHHHHHHHH
Q 030465 78 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENP-ACAATALSA 141 (177)
Q Consensus 78 ~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~-~~A~~Ai~~ 141 (177)
.+|+|.++.-.--...++..++....+.++.+-... +-++|+|++. ...++.++.
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~---------~~~~V~~d~~~~~~~~i~~a 59 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEK---------GTATVTFDSNKVDIEAIIEA 59 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEccc---------CeEEEEEcCCcCCHHHHHHH
Confidence 467787877766677888888888888888876654 3589999983 344443333
No 195
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=21.31 E-value=1.2e+02 Score=19.06 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=21.0
Q ss_pred EEEEEecCHHHHHHHHHHhCCCee
Q 030465 124 LCFVDFENPACAATALSALQGYRM 147 (177)
Q Consensus 124 ~afV~f~~~~~A~~Ai~~l~g~~l 147 (177)
+.+|.|.+..+|.+|-+.|....+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCC
Confidence 689999999999999998886655
No 196
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=21.10 E-value=1.1e+02 Score=17.64 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=22.3
Q ss_pred CeEEEcCCCCCCCHHHHHHhhCCCCCEE
Q 030465 78 STLYVEGLPADSTKREVAHIFRPFVGYK 105 (177)
Q Consensus 78 ~tLfV~nLp~~~te~~L~~lF~~~G~i~ 105 (177)
.++|+.+.....+.++|++++..+|.-.
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~v 29 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGKV 29 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCEE
Confidence 4577777766888999999999998743
No 197
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=20.76 E-value=1e+02 Score=20.16 Aligned_cols=27 Identities=15% Similarity=0.109 Sum_probs=21.3
Q ss_pred cceEEEEEecCHHHHHHHHHHhCCCee
Q 030465 121 PLILCFVDFENPACAATALSALQGYRM 147 (177)
Q Consensus 121 ~kg~afV~f~~~~~A~~Ai~~l~g~~l 147 (177)
.+||-|||=.+..++..|++.+.+...
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i~~ 69 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHIRG 69 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred CceEEEEEeCCHHHHHHHHhcccceee
Confidence 568999999999999999877665443
No 198
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=20.45 E-value=1.7e+02 Score=26.82 Aligned_cols=36 Identities=17% Similarity=0.367 Sum_probs=29.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeec
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 112 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~ 112 (177)
..++|+.+|+..+.++-=.++....-.++.++|++.
T Consensus 301 ~~evY~nGlSTSlP~dVQ~~~irsipGlEna~i~rp 336 (621)
T COG0445 301 TDEVYPNGLSTSLPEDVQEQIIRSIPGLENAEILRP 336 (621)
T ss_pred CceEecCcccccCCHHHHHHHHHhCcccccceeecc
Confidence 578999999988888877778888888888888764
No 199
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=20.30 E-value=1.8e+02 Score=19.62 Aligned_cols=59 Identities=17% Similarity=0.105 Sum_probs=31.1
Q ss_pred eEEEcCCCCCCCHHHHHHhhC-------CC-CCEEEEEEeecCccc---CCCCcce-EEEEEecCHHHHHHHHH
Q 030465 79 TLYVEGLPADSTKREVAHIFR-------PF-VGYKEVRLVIKESKL---RGGDPLI-LCFVDFENPACAATALS 140 (177)
Q Consensus 79 tLfV~nLp~~~te~~L~~lF~-------~~-G~i~~v~l~~~~~~~---~~g~~kg-~afV~f~~~~~A~~Ai~ 140 (177)
++|| |.++++++++..+.+ .. |.|.++.-+-.+ +. .....+| |.++.|.-..++.+.++
T Consensus 10 ~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r-~LAY~I~k~~~G~Yv~~~f~~~~~~i~ele 80 (97)
T CHL00123 10 TMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKR-KLSYKINKYEDGIYIQMNYSGNGKLVNSLE 80 (97)
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCe-eeeEEcCCCCEEEEEEEEEEECHHHHHHHH
Confidence 4555 457777777666544 33 355554322111 00 0122334 68888987666666654
Done!