Query 030465
Match_columns 177
No_of_seqs 242 out of 1613
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 23:02:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030465.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030465hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dnz_A Probable RNA-binding pr 99.9 5.2E-23 1.8E-27 140.1 13.5 89 76-172 4-92 (95)
2 4fxv_A ELAV-like protein 1; RN 99.9 1.7E-23 5.7E-28 144.7 10.6 80 77-164 19-98 (99)
3 2cpz_A CUG triplet repeat RNA- 99.9 1.2E-22 4.2E-27 143.2 13.1 89 77-173 25-113 (115)
4 2dgs_A DAZ-associated protein 99.9 2.5E-22 8.6E-27 137.9 13.7 89 77-174 10-98 (99)
5 1x5u_A Splicing factor 3B subu 99.9 1.9E-22 6.4E-27 139.9 12.8 91 76-174 14-104 (105)
6 2dng_A Eukaryotic translation 99.9 2.8E-22 9.6E-27 138.8 13.2 94 72-175 10-103 (103)
7 2cq0_A Eukaryotic translation 99.9 4.9E-22 1.7E-26 137.4 13.4 86 76-169 14-99 (103)
8 2d9p_A Polyadenylate-binding p 99.9 7.3E-22 2.5E-26 136.5 14.3 90 75-174 13-102 (103)
9 2dnm_A SRP46 splicing factor; 99.9 2.2E-22 7.6E-27 139.2 11.5 87 76-170 12-98 (103)
10 2cqb_A Peptidyl-prolyl CIS-tra 99.9 1.7E-22 5.9E-27 139.4 10.9 90 77-174 12-101 (102)
11 1x5s_A Cold-inducible RNA-bind 99.9 2.6E-22 8.8E-27 138.5 11.6 87 77-171 12-98 (102)
12 1wi8_A EIF-4B, eukaryotic tran 99.9 3.2E-22 1.1E-26 138.7 12.1 89 73-171 11-100 (104)
13 3s8s_A Histone-lysine N-methyl 99.9 1.3E-22 4.6E-27 142.8 9.8 81 77-165 6-86 (110)
14 2cph_A RNA binding motif prote 99.9 7.3E-22 2.5E-26 137.2 13.5 87 76-170 14-102 (107)
15 2dnh_A Bruno-like 5, RNA bindi 99.9 1.2E-21 4.1E-26 135.8 14.3 88 77-170 15-102 (105)
16 1whw_A Hypothetical protein ri 99.9 4.6E-22 1.6E-26 136.5 12.0 89 77-173 8-96 (99)
17 2cpe_A RNA-binding protein EWS 99.9 4.3E-22 1.5E-26 139.9 11.9 91 76-174 14-112 (113)
18 2dgp_A Bruno-like 4, RNA bindi 99.9 2.7E-22 9.3E-27 139.3 10.7 91 76-171 12-102 (106)
19 1x5t_A Splicing factor 3B subu 99.9 1.9E-22 6.6E-27 137.6 9.3 87 77-171 5-92 (96)
20 1u6f_A Tcubp1, RNA-binding pro 99.9 6.2E-22 2.1E-26 143.9 12.4 88 74-169 39-126 (139)
21 2do4_A Squamous cell carcinoma 99.9 1.6E-21 5.3E-26 134.2 13.7 83 77-168 17-99 (100)
22 1x4h_A RNA-binding protein 28; 99.9 1.2E-21 4E-26 137.0 13.3 87 76-170 14-106 (111)
23 3bs9_A Nucleolysin TIA-1 isofo 99.9 4.4E-22 1.5E-26 133.3 10.0 82 76-165 5-86 (87)
24 2la6_A RNA-binding protein FUS 99.9 1.1E-21 3.7E-26 134.8 12.1 83 73-163 9-99 (99)
25 2cpf_A RNA binding motif prote 99.9 5.3E-22 1.8E-26 136.0 10.2 89 77-170 5-93 (98)
26 3ex7_B RNA-binding protein 8A; 99.9 4.5E-22 1.5E-26 142.4 10.0 85 77-169 22-106 (126)
27 1x4a_A Splicing factor, argini 99.9 2.3E-21 7.9E-26 135.4 13.4 84 76-170 21-104 (109)
28 2cqi_A Nucleolysin TIAR; RNA r 99.9 1.8E-21 6.1E-26 134.6 12.6 86 76-171 14-99 (103)
29 2fc8_A NCL protein; structure 99.9 2.1E-21 7.1E-26 133.9 12.8 88 76-174 14-101 (102)
30 2cq3_A RNA-binding protein 9; 99.9 3.6E-21 1.2E-25 133.1 14.0 85 76-170 14-98 (103)
31 2kxn_B Transformer-2 protein h 99.9 9.4E-22 3.2E-26 142.1 11.0 86 75-168 44-129 (129)
32 2div_A TRNA selenocysteine ass 99.9 8E-22 2.7E-26 135.3 10.1 87 76-166 8-95 (99)
33 2khc_A Testis-specific RNP-typ 99.9 2.5E-21 8.4E-26 137.0 12.8 81 75-163 38-118 (118)
34 2cqc_A Arginine/serine-rich sp 99.9 1.5E-21 5.2E-26 132.7 11.2 81 76-164 14-94 (95)
35 2e5h_A Zinc finger CCHC-type a 99.9 1.8E-21 6.2E-26 132.2 11.5 79 77-163 16-94 (94)
36 1p27_B RNA-binding protein 8A; 99.9 1.1E-21 3.9E-26 136.1 10.6 84 76-167 22-105 (106)
37 2lkz_A RNA-binding protein 5; 99.9 3.4E-22 1.1E-26 137.3 7.7 80 77-164 9-94 (95)
38 2dgo_A Cytotoxic granule-assoc 99.9 2.8E-21 9.4E-26 136.1 12.7 86 76-169 14-99 (115)
39 2fy1_A RNA-binding motif prote 99.9 1.8E-21 6.2E-26 138.0 11.7 86 75-169 5-90 (116)
40 4f25_A Polyadenylate-binding p 99.9 1E-21 3.5E-26 138.9 9.9 83 77-169 5-87 (115)
41 3md1_A Nuclear and cytoplasmic 99.9 2.5E-21 8.6E-26 128.5 11.2 82 77-166 1-82 (83)
42 2cpi_A CCR4-NOT transcription 99.9 2.8E-21 9.6E-26 135.8 11.9 85 77-166 15-102 (111)
43 2lxi_A RNA-binding protein 10; 99.9 1E-22 3.6E-27 138.5 4.4 83 77-167 1-85 (91)
44 2do0_A HnRNP M, heterogeneous 99.9 9.9E-21 3.4E-25 133.0 14.2 84 77-169 15-98 (114)
45 3mdf_A Peptidyl-prolyl CIS-tra 99.9 1.5E-21 5E-26 130.2 9.2 80 76-163 6-85 (85)
46 2x1f_A MRNA 3'-END-processing 99.9 2.2E-21 7.5E-26 132.6 10.1 82 77-166 2-83 (96)
47 2dgv_A HnRNP M, heterogeneous 99.9 4.1E-21 1.4E-25 130.0 11.2 82 76-167 7-88 (92)
48 1x4b_A Heterogeneous nuclear r 99.9 1.6E-21 5.5E-26 137.7 9.6 88 76-172 26-113 (116)
49 2dh8_A DAZ-associated protein 99.9 2.2E-21 7.7E-26 134.5 10.0 87 76-171 15-101 (105)
50 1h2v_Z 20 kDa nuclear CAP bind 99.9 4.8E-21 1.6E-25 142.0 12.0 85 76-168 38-122 (156)
51 1oo0_B CG8781-PA, drosophila Y 99.9 2.1E-21 7.3E-26 135.7 9.3 85 76-168 25-109 (110)
52 2jrs_A RNA-binding protein 39; 99.9 8.2E-21 2.8E-25 132.9 12.1 82 76-165 25-106 (108)
53 2cpx_A Hypothetical protein FL 99.9 1.5E-21 5.2E-26 137.4 8.3 89 75-171 23-111 (115)
54 3p5t_L Cleavage and polyadenyl 99.9 6.9E-22 2.4E-26 133.8 6.2 83 78-168 2-86 (90)
55 4a8x_A RNA-binding protein wit 99.9 2.8E-21 9.6E-26 129.5 9.0 84 77-168 4-88 (88)
56 1x4d_A Matrin 3; structural ge 99.9 5E-21 1.7E-25 133.1 10.6 77 75-165 13-92 (102)
57 2dnq_A RNA-binding protein 4B; 99.9 9.9E-21 3.4E-25 127.8 11.6 82 76-173 7-88 (90)
58 2fc9_A NCL protein; structure 99.9 9.3E-21 3.2E-25 130.5 11.7 83 76-170 14-96 (101)
59 2ywk_A Putative RNA-binding pr 99.8 3.2E-21 1.1E-25 131.2 9.1 80 76-164 15-94 (95)
60 2cqg_A TDP-43, TAR DNA-binding 99.8 1.8E-20 6.1E-25 129.5 13.0 85 76-170 14-98 (103)
61 2cq1_A PTB-like protein L; RRM 99.8 2.4E-20 8.3E-25 129.4 13.6 80 76-169 14-95 (101)
62 2dhg_A TRNA selenocysteine ass 99.8 6.9E-21 2.4E-25 131.7 10.6 85 76-169 8-94 (104)
63 2cqd_A RNA-binding region cont 99.8 1.8E-20 6.3E-25 132.2 12.6 80 77-165 17-96 (116)
64 2cq4_A RNA binding motif prote 99.8 1.1E-21 3.7E-26 138.1 5.8 84 76-168 24-107 (114)
65 1x5o_A RNA binding motif, sing 99.8 7.3E-20 2.5E-24 128.6 15.1 85 77-165 25-112 (114)
66 2cqp_A RNA-binding protein 12; 99.8 5.4E-21 1.8E-25 130.9 8.8 81 77-165 15-95 (98)
67 1x4e_A RNA binding motif, sing 99.8 1.9E-21 6.6E-26 129.8 6.4 80 76-163 4-83 (85)
68 1wez_A HnRNP H', FTP-3, hetero 99.8 2E-20 6.8E-25 129.8 11.6 80 77-167 15-94 (102)
69 1why_A Hypothetical protein ri 99.8 3.2E-20 1.1E-24 127.0 12.5 80 77-168 17-96 (97)
70 3ulh_A THO complex subunit 4; 99.8 1.5E-20 5.1E-25 130.7 11.0 79 76-163 28-106 (107)
71 2m2b_A RNA-binding protein 10; 99.8 5.6E-21 1.9E-25 137.9 9.1 84 76-168 22-111 (131)
72 1rk8_A CG8781-PA, CG8781-PA pr 99.8 9.5E-21 3.2E-25 141.8 10.3 87 76-170 71-157 (165)
73 1wf1_A RNA-binding protein RAL 99.8 2.3E-20 7.8E-25 130.6 11.5 83 76-174 26-109 (110)
74 2dgw_A Probable RNA-binding pr 99.8 2.7E-20 9.2E-25 125.8 11.4 80 76-166 9-88 (91)
75 2cpj_A Non-POU domain-containi 99.8 3.4E-20 1.1E-24 127.3 11.9 80 77-170 15-94 (99)
76 3ns6_A Eukaryotic translation 99.8 3.2E-21 1.1E-25 133.1 6.8 81 77-164 6-92 (100)
77 1sjq_A Polypyrimidine tract-bi 99.8 6.3E-21 2.1E-25 133.2 8.3 80 76-169 15-96 (105)
78 1x4c_A Splicing factor, argini 99.8 4.1E-20 1.4E-24 129.1 12.4 82 76-167 14-95 (108)
79 2dgt_A RNA-binding protein 30; 99.8 2.5E-20 8.5E-25 126.4 11.0 82 76-173 9-90 (92)
80 2dgx_A KIAA0430 protein; RRM d 99.8 1.3E-20 4.4E-25 129.0 9.6 81 77-168 9-93 (96)
81 3r27_A HnRNP L, heterogeneous 99.8 1.1E-20 3.9E-25 130.7 9.2 76 76-165 20-97 (100)
82 2kn4_A Immunoglobulin G-bindin 99.8 2.6E-20 8.9E-25 137.9 11.3 85 77-169 70-154 (158)
83 1wex_A Hypothetical protein (r 99.8 4.8E-20 1.7E-24 128.5 11.9 77 77-167 15-93 (104)
84 2jwn_A Embryonic polyadenylate 99.8 1.8E-20 6E-25 133.7 9.9 83 77-168 36-118 (124)
85 3ucg_A Polyadenylate-binding p 99.8 1.7E-20 5.7E-25 126.0 9.1 80 77-165 6-85 (89)
86 2rs2_A Musashi-1, RNA-binding 99.8 1.6E-20 5.4E-25 131.6 9.2 86 74-168 22-107 (109)
87 1p1t_A Cleavage stimulation fa 99.8 5.9E-21 2E-25 132.0 6.7 83 77-167 8-90 (104)
88 2err_A Ataxin-2-binding protei 99.8 1.5E-20 5.2E-25 131.7 8.9 80 76-165 28-107 (109)
89 2j76_E EIF-4B, EIF4B, eukaryot 99.8 7.9E-21 2.7E-25 131.0 7.2 83 74-165 16-98 (100)
90 1wg5_A Heterogeneous nuclear r 99.8 7.8E-20 2.7E-24 126.9 12.2 83 76-168 14-97 (104)
91 2ad9_A Polypyrimidine tract-bi 99.8 5.3E-20 1.8E-24 131.2 11.6 79 77-169 31-111 (119)
92 3n9u_C Cleavage and polyadenyl 99.8 1.9E-20 6.6E-25 139.4 9.7 80 77-164 55-136 (156)
93 2ek1_A RNA-binding protein 12; 99.8 8.4E-21 2.9E-25 129.1 6.9 80 77-164 15-94 (95)
94 3s7r_A Heterogeneous nuclear r 99.8 4.6E-20 1.6E-24 123.6 10.1 78 76-162 10-87 (87)
95 2e5j_A Methenyltetrahydrofolat 99.8 5.6E-20 1.9E-24 125.9 10.4 79 76-167 18-96 (97)
96 2lea_A Serine/arginine-rich sp 99.8 1E-20 3.5E-25 137.6 7.0 86 76-169 46-131 (135)
97 2kt5_A RNA and export factor-b 99.8 9E-20 3.1E-24 130.2 11.8 83 75-166 33-115 (124)
98 2cpd_A Apobec-1 stimulating pr 99.8 1.9E-19 6.6E-24 123.5 12.8 78 76-169 14-93 (99)
99 1x4f_A Matrin 3; structural ge 99.8 1E-19 3.6E-24 128.4 11.7 77 76-166 24-103 (112)
100 1s79_A Lupus LA protein; RRM, 99.8 3E-20 1E-24 129.2 8.4 78 77-164 11-88 (103)
101 2lcw_A RNA-binding protein FUS 99.7 6.9E-22 2.4E-26 139.7 0.0 87 77-171 7-101 (116)
102 2jvr_A Nucleolar protein 3; RN 99.8 1.3E-20 4.6E-25 132.8 6.3 79 77-167 28-107 (111)
103 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 8.8E-20 3E-24 132.1 10.6 78 77-162 63-140 (140)
104 1fj7_A Nucleolin RBD1, protein 99.8 5.3E-21 1.8E-25 131.7 3.8 84 76-169 16-99 (101)
105 2f3j_A RNA and export factor b 99.8 2.1E-19 7.1E-24 136.4 12.9 82 75-165 86-167 (177)
106 2a3j_A U1 small nuclear ribonu 99.8 6.9E-20 2.4E-24 132.1 9.4 80 76-166 28-111 (127)
107 1x4g_A Nucleolysin TIAR; struc 99.8 9.8E-20 3.3E-24 127.2 9.9 79 77-169 25-103 (109)
108 2dis_A Unnamed protein product 99.8 4E-20 1.4E-24 128.9 7.9 83 77-167 8-94 (109)
109 2dnp_A RNA-binding protein 14; 99.8 1.1E-19 3.7E-24 122.7 9.8 78 77-170 9-86 (90)
110 1wel_A RNA-binding protein 12; 99.8 5.7E-20 2E-24 131.3 8.9 81 75-164 23-103 (124)
111 2nlw_A Eukaryotic translation 99.8 5.9E-20 2E-24 127.7 8.7 80 77-165 15-100 (105)
112 2hvz_A Splicing factor, argini 99.8 4.5E-20 1.5E-24 127.1 8.0 79 78-169 1-79 (101)
113 3lqv_A PRE-mRNA branch site pr 99.8 1.3E-19 4.6E-24 127.4 10.5 82 73-165 4-85 (115)
114 2cpy_A RNA-binding protein 12; 99.8 5.6E-20 1.9E-24 129.6 8.5 80 76-165 14-94 (114)
115 2cqh_A IGF-II mRNA-binding pro 99.8 6.9E-20 2.4E-24 124.3 8.6 84 76-174 7-92 (93)
116 2db1_A Heterogeneous nuclear r 99.8 8.3E-20 2.9E-24 129.7 9.3 79 76-164 16-97 (118)
117 2mss_A Protein (musashi1); RNA 99.8 3.3E-20 1.1E-24 121.0 6.5 75 79-162 1-75 (75)
118 2ytc_A PRE-mRNA-splicing facto 99.8 1.3E-19 4.6E-24 120.7 9.4 73 77-163 12-85 (85)
119 2jvo_A Nucleolar protein 3; nu 99.8 1.3E-19 4.3E-24 126.9 9.5 77 76-168 30-106 (108)
120 2xnq_A Nuclear polyadenylated 99.8 2E-19 6.9E-24 123.4 10.1 76 74-165 19-95 (97)
121 1uaw_A Mouse-musashi-1; RNP-ty 99.8 4E-20 1.4E-24 120.9 6.1 76 78-162 1-76 (77)
122 2dgu_A Heterogeneous nuclear r 99.8 3E-19 1E-23 123.5 10.6 75 77-167 11-85 (103)
123 1x5p_A Negative elongation fac 99.8 8.4E-19 2.9E-23 119.9 12.7 80 76-171 14-93 (97)
124 2ki2_A SS-DNA binding protein 99.8 1.5E-20 5E-25 126.8 3.8 80 78-166 2-81 (90)
125 4f02_A Polyadenylate-binding p 99.8 2E-19 6.9E-24 139.4 10.6 83 75-165 13-95 (213)
126 3q2s_C Cleavage and polyadenyl 99.8 8.8E-20 3E-24 143.7 8.2 80 76-163 67-148 (229)
127 1fjc_A Nucleolin RBD2, protein 99.8 1E-19 3.4E-24 124.1 7.4 80 76-168 15-94 (96)
128 1nu4_A U1A RNA binding domain; 99.8 9.1E-20 3.1E-24 124.4 6.8 80 76-166 7-90 (97)
129 1sjr_A Polypyrimidine tract-bi 99.8 2.5E-19 8.6E-24 134.1 9.7 79 77-165 46-124 (164)
130 2hgl_A HNRPF protein, heteroge 99.8 1.4E-19 4.9E-24 131.9 8.1 78 77-164 44-124 (136)
131 2e5i_A Heterogeneous nuclear r 99.8 9.8E-19 3.4E-23 125.5 12.1 75 79-165 27-102 (124)
132 2wbr_A GW182, gawky, LD47780P; 99.8 1.6E-19 5.4E-24 121.7 7.0 73 77-163 7-79 (89)
133 2krb_A Eukaryotic translation 99.8 1.1E-19 3.8E-24 120.4 5.9 74 77-159 1-80 (81)
134 2kvi_A Nuclear polyadenylated 99.8 5.3E-19 1.8E-23 120.8 9.5 75 77-167 10-85 (96)
135 2la4_A Nuclear and cytoplasmic 99.8 2E-19 6.9E-24 123.8 7.2 74 77-164 27-100 (101)
136 2lmi_A GRSF-1, G-rich sequence 99.8 1.4E-19 4.7E-24 126.3 6.2 80 75-164 9-91 (107)
137 3pgw_S U1-70K; protein-RNA com 99.8 9.9E-19 3.4E-23 149.5 12.4 85 75-167 100-184 (437)
138 1whx_A Hypothetical protein ri 99.8 5E-19 1.7E-23 124.4 8.6 75 77-165 10-84 (111)
139 2hgn_A Heterogeneous nuclear r 99.8 8.7E-20 3E-24 133.5 4.7 80 77-167 46-125 (139)
140 2dnn_A RNA-binding protein 12; 99.8 5.9E-19 2E-23 124.0 8.7 76 77-163 16-91 (109)
141 2i2y_A Fusion protein consists 99.8 9E-19 3.1E-23 128.8 10.0 77 76-165 72-148 (150)
142 3zzy_A Polypyrimidine tract-bi 99.8 1.2E-18 4.1E-23 125.9 10.2 78 77-165 28-106 (130)
143 3egn_A RNA-binding protein 40; 99.8 7.4E-20 2.5E-24 133.7 3.7 86 75-169 43-134 (143)
144 3md3_A Nuclear and cytoplasmic 99.8 4.6E-18 1.6E-22 125.1 12.3 80 76-163 86-165 (166)
145 3beg_B Splicing factor, argini 99.8 2.2E-18 7.5E-23 121.7 9.9 79 77-165 16-94 (115)
146 1fxl_A Paraneoplastic encephal 99.8 3.1E-18 1.1E-22 126.1 11.1 81 77-165 2-82 (167)
147 2qfj_A FBP-interacting repress 99.8 4E-18 1.4E-22 131.0 12.1 83 77-167 125-207 (216)
148 1b7f_A Protein (SXL-lethal pro 99.8 1.7E-18 6E-23 128.0 9.6 82 77-166 3-84 (168)
149 2cq2_A Hypothetical protein LO 99.8 1.1E-18 3.7E-23 123.5 8.0 81 76-166 24-107 (114)
150 3d2w_A TAR DNA-binding protein 99.8 1.8E-18 6.2E-23 117.0 8.6 75 77-166 11-85 (89)
151 1iqt_A AUF1, heterogeneous nuc 99.8 1.8E-19 6.1E-24 117.3 3.3 75 79-162 1-75 (75)
152 2hgm_A HNRPF protein, heteroge 99.8 1.3E-18 4.5E-23 125.2 8.0 77 77-164 42-120 (126)
153 2yh0_A Splicing factor U2AF 65 99.8 6.1E-18 2.1E-22 128.3 11.8 86 75-168 112-197 (198)
154 2e44_A Insulin-like growth fac 99.8 2.6E-18 9E-23 117.0 8.8 77 77-165 15-92 (96)
155 2xs2_A Deleted in azoospermia- 99.8 5.8E-19 2E-23 121.6 5.4 78 77-165 9-86 (102)
156 2e5g_A U6 snRNA-specific termi 99.8 5.2E-18 1.8E-22 115.3 9.9 78 77-168 8-85 (94)
157 1wg1_A KIAA1579 protein, homol 99.8 5.8E-18 2E-22 113.8 9.5 74 77-165 5-78 (88)
158 1b7f_A Protein (SXL-lethal pro 99.8 1.5E-17 5.1E-22 122.9 12.6 80 77-162 89-168 (168)
159 1wf0_A TDP-43, TAR DNA-binding 99.7 2.8E-18 9.5E-23 115.2 7.8 79 77-170 5-83 (88)
160 1l3k_A Heterogeneous nuclear r 99.7 6.1E-18 2.1E-22 128.1 10.3 84 77-169 104-187 (196)
161 3nmr_A Cugbp ELAV-like family 99.7 6.9E-18 2.4E-22 125.3 10.3 81 77-163 95-175 (175)
162 3nmr_A Cugbp ELAV-like family 99.7 9.3E-18 3.2E-22 124.6 10.8 85 77-166 3-89 (175)
163 2g4b_A Splicing factor U2AF 65 99.7 8.5E-18 2.9E-22 124.8 10.5 78 77-162 94-171 (172)
164 2dha_A FLJ20171 protein; RRM d 99.7 1.4E-18 4.9E-23 124.5 5.9 78 76-163 22-103 (123)
165 3tyt_A Heterogeneous nuclear r 99.7 5.9E-18 2E-22 131.0 9.7 76 77-165 4-80 (205)
166 4f02_A Polyadenylate-binding p 99.7 2.7E-18 9.2E-23 133.0 7.3 79 77-165 103-181 (213)
167 1l3k_A Heterogeneous nuclear r 99.7 6.4E-18 2.2E-22 128.0 9.2 82 75-165 11-92 (196)
168 2bz2_A Negative elongation fac 99.7 1.4E-17 4.8E-22 118.8 9.6 78 75-168 37-114 (121)
169 3md3_A Nuclear and cytoplasmic 99.7 1.1E-17 3.9E-22 123.0 9.4 80 78-166 1-80 (166)
170 1fxl_A Paraneoplastic encephal 99.7 2.5E-17 8.5E-22 121.3 10.8 80 77-162 88-167 (167)
171 2diu_A KIAA0430 protein; struc 99.7 1.6E-17 5.4E-22 113.1 8.9 71 77-165 8-84 (96)
172 2cjk_A Nuclear polyadenylated 99.7 8.2E-18 2.8E-22 124.4 7.2 80 77-165 87-166 (167)
173 2qfj_A FBP-interacting repress 99.7 2.4E-17 8.3E-22 126.6 9.9 81 77-165 28-108 (216)
174 2dnl_A Cytoplasmic polyadenyla 99.7 9.1E-18 3.1E-22 118.2 6.9 70 77-147 8-80 (114)
175 2j8a_A Histone-lysine N-methyl 99.7 1.1E-17 3.8E-22 120.1 6.9 79 78-164 3-95 (136)
176 2hzc_A Splicing factor U2AF 65 99.7 1.7E-17 5.9E-22 110.7 6.2 69 77-160 6-85 (87)
177 3pgw_A U1-A; protein-RNA compl 99.7 1.3E-16 4.6E-21 127.7 11.7 79 77-166 9-91 (282)
178 3pgw_A U1-A; protein-RNA compl 99.7 6.4E-16 2.2E-20 123.8 15.4 76 76-163 206-281 (282)
179 3tyt_A Heterogeneous nuclear r 99.7 4.1E-17 1.4E-21 126.3 7.8 80 77-162 123-204 (205)
180 2pe8_A Splicing factor 45; RRM 99.7 2.5E-16 8.4E-21 109.8 10.7 81 76-163 7-92 (105)
181 1fje_B Nucleolin RBD12, protei 99.7 1.1E-16 3.9E-21 119.3 9.6 77 76-165 98-174 (175)
182 2adc_A Polypyrimidine tract-bi 99.7 8.1E-17 2.8E-21 126.0 8.5 77 76-165 33-110 (229)
183 3u1l_A PRE-mRNA-splicing facto 99.7 8.6E-17 3E-21 127.3 8.3 80 77-165 134-229 (240)
184 2cjk_A Nuclear polyadenylated 99.7 8.6E-17 2.9E-21 118.8 7.3 78 77-164 3-80 (167)
185 2voo_A Lupus LA protein; RNA-b 99.7 2.9E-16 1E-20 120.5 9.6 79 77-165 109-187 (193)
186 3smz_A Protein raver-1, ribonu 99.7 3E-16 1E-20 125.8 9.7 82 77-167 184-266 (284)
187 2dit_A HIV TAT specific factor 99.7 1.5E-15 5.1E-20 106.5 11.4 79 76-166 14-103 (112)
188 1qm9_A Polypyrimidine tract-bi 99.6 9.7E-16 3.3E-20 116.6 10.6 77 77-165 120-197 (198)
189 2ghp_A U4/U6 snRNA-associated 99.6 3.1E-16 1E-20 126.2 7.9 82 76-165 209-291 (292)
190 2adc_A Polypyrimidine tract-bi 99.6 8.5E-16 2.9E-20 120.1 9.8 77 77-165 151-228 (229)
191 3smz_A Protein raver-1, ribonu 99.6 1.2E-15 4E-20 122.3 10.3 82 77-166 95-176 (284)
192 1qm9_A Polypyrimidine tract-bi 99.6 3.6E-16 1.2E-20 118.9 6.9 76 77-165 3-79 (198)
193 3sde_A Paraspeckle component 1 99.6 1.7E-15 5.8E-20 120.7 10.1 83 77-165 96-179 (261)
194 3sde_A Paraspeckle component 1 99.6 1.3E-15 4.5E-20 121.3 9.4 74 77-164 22-95 (261)
195 1fje_B Nucleolin RBD12, protei 99.6 1.2E-16 4.2E-21 119.1 1.6 82 75-166 11-92 (175)
196 3tht_A Alkylated DNA repair pr 99.6 2.8E-15 9.5E-20 124.3 9.3 81 72-163 13-97 (345)
197 3v4m_A Splicing factor U2AF 65 99.6 7.7E-15 2.6E-19 102.1 8.4 81 77-163 5-95 (105)
198 2ghp_A U4/U6 snRNA-associated 99.6 3.7E-15 1.3E-19 119.8 7.6 80 77-165 117-197 (292)
199 2d9o_A DNAJ (HSP40) homolog, s 99.6 2.6E-14 8.7E-19 98.7 10.6 78 77-169 10-94 (100)
200 2g4b_A Splicing factor U2AF 65 99.6 4.3E-15 1.5E-19 110.1 7.1 74 77-165 4-88 (172)
201 3ue2_A Poly(U)-binding-splicin 99.6 2.3E-14 7.7E-19 101.8 9.6 82 77-163 20-107 (118)
202 1jmt_A Splicing factor U2AF 35 99.5 1.8E-15 6.1E-20 105.2 3.5 73 81-162 19-103 (104)
203 2yh0_A Splicing factor U2AF 65 99.5 7.4E-15 2.5E-19 111.2 7.2 74 77-165 4-88 (198)
204 3s6e_A RNA-binding protein 39; 99.4 5.3E-13 1.8E-17 94.2 9.5 77 75-163 5-91 (114)
205 1owx_A Lupus LA protein, SS-B, 99.3 3.8E-11 1.3E-15 85.3 10.2 72 77-162 18-93 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.2 1.9E-11 6.4E-16 82.3 7.1 72 77-165 7-86 (91)
207 1ufw_A Synaptojanin 2; RNP dom 99.0 2.4E-10 8.1E-15 77.4 4.4 69 77-162 15-92 (95)
208 3dxb_A Thioredoxin N-terminall 99.0 1.5E-09 5.3E-14 84.0 9.1 70 89-163 141-211 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.7 5.8E-08 2E-12 67.2 6.9 70 77-160 21-95 (117)
210 1whv_A Poly(A)-specific ribonu 98.2 6.7E-06 2.3E-10 55.6 8.2 55 77-143 16-70 (100)
211 1uw4_A UPF3X; nonsense mediate 98.2 2.6E-05 8.9E-10 52.3 10.0 87 78-165 2-88 (91)
212 1wey_A Calcipressin 1; structu 98.0 8.1E-06 2.8E-10 55.9 5.4 75 77-165 5-84 (104)
213 3ctr_A Poly(A)-specific ribonu 97.9 1.4E-05 4.8E-10 54.2 5.2 54 78-143 7-60 (101)
214 2l08_A Regulator of nonsense t 97.7 0.00011 3.6E-09 49.8 7.0 87 77-164 9-95 (97)
215 2dhx_A Poly (ADP-ribose) polym 97.7 0.00014 4.7E-09 49.7 7.2 67 77-160 8-79 (104)
216 1wwh_A Nucleoporin 35, nucleop 96.7 0.0064 2.2E-07 42.5 7.3 62 77-149 24-85 (119)
217 3pq1_A Poly(A) RNA polymerase; 96.6 0.00081 2.8E-08 57.5 2.5 54 77-139 53-106 (464)
218 2kn4_A Immunoglobulin G-bindin 96.3 0.0033 1.1E-07 45.2 3.7 35 106-145 2-36 (158)
219 2i2y_A Fusion protein consists 95.1 0.0077 2.6E-07 43.0 1.8 41 118-164 9-50 (150)
220 3d45_A Poly(A)-specific ribonu 95.0 0.064 2.2E-06 46.3 7.4 55 77-143 440-494 (507)
221 3p3d_A Nucleoporin 53; structu 93.8 0.048 1.7E-06 38.7 3.3 71 77-149 7-88 (132)
222 4f25_A Polyadenylate-binding p 80.0 0.35 1.2E-05 32.6 0.0 17 77-93 97-113 (115)
223 2g0c_A ATP-dependent RNA helic 69.3 17 0.00057 22.2 6.0 68 79-163 2-75 (76)
224 4e8u_A Putative uncharacterize 57.2 24 0.00083 25.8 5.6 48 79-132 14-72 (172)
225 2i9x_A Putative septation prot 43.6 35 0.0012 22.0 4.1 26 103-131 5-30 (87)
226 3fry_A Probable copper-exporti 38.9 57 0.002 19.0 4.8 54 78-141 7-60 (73)
227 2ia9_A Putative septation prot 38.6 45 0.0015 22.1 4.1 26 103-131 5-30 (100)
228 2i9z_A Putative septation prot 38.2 46 0.0016 22.2 4.2 26 103-131 5-30 (105)
229 3uzu_A Ribosomal RNA small sub 35.4 12 0.0004 29.4 1.0 35 78-112 115-149 (279)
230 3fut_A Dimethyladenosine trans 35.4 20 0.00067 27.9 2.3 33 78-111 111-143 (271)
231 1ik9_C DNA ligase IV; DNA END 32.3 23 0.00078 19.0 1.6 16 86-101 19-34 (37)
232 1qyr_A KSGA, high level kasuga 31.0 35 0.0012 26.1 3.1 33 78-110 91-123 (252)
233 4eyt_A Telomerase associated p 29.5 1.2E+02 0.0041 19.8 7.8 55 77-142 12-66 (129)
234 4a4j_A Pacszia, cation-transpo 29.2 80 0.0028 17.7 4.1 45 78-131 4-48 (69)
235 4bby_A Alkyldihydroxyacetoneph 27.7 74 0.0025 27.9 4.9 57 83-143 349-409 (658)
236 3tqs_A Ribosomal RNA small sub 26.1 14 0.00049 28.4 0.1 34 79-112 98-131 (255)
237 3ts2_A Protein LIN-28 homolog 25.6 17 0.00058 25.8 0.3 28 92-130 2-29 (148)
238 1wvf_A 4-cresol dehydrogenase 23.7 68 0.0023 27.2 3.8 43 93-139 217-261 (520)
239 3off_A LDLR chaperone BOCA; ME 23.2 1.6E+02 0.0054 19.0 5.1 55 79-145 13-75 (90)
240 3ftd_A Dimethyladenosine trans 22.7 35 0.0012 25.9 1.7 29 78-106 96-124 (249)
241 2okq_A Hypothetical protein YB 22.6 1.9E+02 0.0063 20.3 5.2 48 94-141 50-109 (141)
242 1i4w_A Mitochondrial replicati 21.9 31 0.001 28.1 1.2 22 79-100 144-165 (353)
243 3swz_A Steroid 17-alpha-hydrox 20.9 67 0.0023 26.1 3.2 50 78-139 15-68 (494)
No 1
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=5.2e-23 Score=140.14 Aligned_cols=89 Identities=25% Similarity=0.359 Sum_probs=80.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
++++|||+|||+++|+++|+++|++||.|.+|+++.++ .+++++|||||+|.+.++|++|++.||+..|.+ +
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 75 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDS---DTGRSKGYGFITFSDSECARRALEQLNGFELAG-----R 75 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCS---SSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSS-----S
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecC---CCCceeeEEEEEECCHHHHHHHHHHhCCCeeCC-----c
Confidence 37999999999999999999999999999999999886 568899999999999999999999999999976 4
Q ss_pred ceEEEeecCCCCCCCCC
Q 030465 156 FLRLQFSRNPGPRSVFG 172 (177)
Q Consensus 156 ~l~V~~a~~~~~r~~~g 172 (177)
.|+|+|++.+..+..+.
T Consensus 76 ~l~V~~a~~~~~~~~~~ 92 (95)
T 2dnz_A 76 PMRVGHVTERLDGGSGP 92 (95)
T ss_dssp CCEEEESSCCCCCCCCC
T ss_pred EEEEEEcccccCCCCCC
Confidence 79999998776555443
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.90 E-value=1.7e-23 Score=144.70 Aligned_cols=80 Identities=24% Similarity=0.445 Sum_probs=75.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|+++|++||.|.+|+|+.++ .+++++|||||+|.+.++|++|++.|||..|.+ ++
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~---~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g-----r~ 90 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDK---VAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS-----KT 90 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECS---SSCCEEEEEEEEESSHHHHHHHHHHHTTCEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecC---CCCcccccEEEEECCHHHHHHHHHHhCCCEECC-----EE
Confidence 6899999999999999999999999999999999987 678999999999999999999999999999966 58
Q ss_pred eEEEeecC
Q 030465 157 LRLQFSRN 164 (177)
Q Consensus 157 l~V~~a~~ 164 (177)
|+|+||++
T Consensus 91 l~V~~AkP 98 (99)
T 4fxv_A 91 IKVSYARP 98 (99)
T ss_dssp CEEEECCB
T ss_pred EEEEEeeC
Confidence 99999963
No 3
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.89 E-value=1.2e-22 Score=143.21 Aligned_cols=89 Identities=20% Similarity=0.436 Sum_probs=80.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|+++|++||.|.+|+|+.++ .+++++|||||+|.+.++|++|++.||+..|.+ +.
T Consensus 25 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~~ 96 (115)
T 2cpz_A 25 GANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDK---QTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM-----KR 96 (115)
T ss_dssp TCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECS---SSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT-----EE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC---CCCCcCccEEEEECCHHHHHHHHHHcCCCEECC-----EE
Confidence 6899999999999999999999999999999999887 578899999999999999999999999999976 58
Q ss_pred eEEEeecCCCCCCCCCC
Q 030465 157 LRLQFSRNPGPRSVFGA 173 (177)
Q Consensus 157 l~V~~a~~~~~r~~~g~ 173 (177)
|+|+|++.+..+....+
T Consensus 97 l~V~~a~~~~~~~~~~~ 113 (115)
T 2cpz_A 97 LKVQLKRSKNDSKSGPS 113 (115)
T ss_dssp CEEECCCCSCCCCCCCC
T ss_pred EEEEEcCCCCcCCCCCC
Confidence 99999988766554433
No 4
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=2.5e-22 Score=137.93 Aligned_cols=89 Identities=18% Similarity=0.291 Sum_probs=80.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|+++|++||.|.+|+|+.++ .+++++|||||+|.+.++|++|++ ||+..|.+ +.
T Consensus 10 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g-----~~ 80 (99)
T 2dgs_A 10 SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDA---EKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMG-----KK 80 (99)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCT---TTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSS-----CB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC---CCCCCCceEEEEECCHHHHHHHHH-hCCCEECC-----eE
Confidence 7999999999999999999999999999999999886 568899999999999999999998 99999976 48
Q ss_pred eEEEeecCCCCCCCCCCC
Q 030465 157 LRLQFSRNPGPRSVFGAR 174 (177)
Q Consensus 157 l~V~~a~~~~~r~~~g~~ 174 (177)
|+|+|++.+..+....++
T Consensus 81 l~V~~a~~~~~~~~~~~~ 98 (99)
T 2dgs_A 81 VEVKRAEPRDSKSSGPSS 98 (99)
T ss_dssp CEEEECCCCCCCCCCSSC
T ss_pred EEEEECCCCcccCCCCCC
Confidence 999999887666654443
No 5
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.9e-22 Score=139.88 Aligned_cols=91 Identities=15% Similarity=0.128 Sum_probs=80.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.++ .+++++|||||+|.+.++|++|++.||+..|.+ +
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 85 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDR---VTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG-----K 85 (105)
T ss_dssp TTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCS---SSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS-----C
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC---CCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC-----e
Confidence 37999999999999999999999999999999998886 578899999999999999999999999999976 4
Q ss_pred ceEEEeecCCCCCCCCCCC
Q 030465 156 FLRLQFSRNPGPRSVFGAR 174 (177)
Q Consensus 156 ~l~V~~a~~~~~r~~~g~~ 174 (177)
.|+|+|++.+..+...+.+
T Consensus 86 ~l~v~~a~~~~~~~~~~~~ 104 (105)
T 1x5u_A 86 PIRVNKASAHNKNLSGPSS 104 (105)
T ss_dssp BCEEEETTTTSCCCCCCCC
T ss_pred EEEEEECCCCCcCCCCCCC
Confidence 8999999887655544433
No 6
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.89 E-value=2.8e-22 Score=138.75 Aligned_cols=94 Identities=23% Similarity=0.434 Sum_probs=81.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCC
Q 030465 72 LPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 151 (177)
Q Consensus 72 ~p~~~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~ 151 (177)
.+..+.++|||+|||+++|+++|+++|++|+ |.+|+|+.++ .+++++|||||+|.+.++|++|+ .||+..|.+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~---~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g-- 82 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDK---DTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGD-- 82 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECS---SSCSEEEEEEEEESSHHHHHHHG-GGTTCEETT--
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecC---CCCccceEEEEEECCHHHHHHHH-hhCCCeECC--
Confidence 3344479999999999999999999999996 9999999987 67889999999999999999999 899999966
Q ss_pred CCCcceEEEeecCCCCCCCCCCCC
Q 030465 152 PDSKFLRLQFSRNPGPRSVFGARG 175 (177)
Q Consensus 152 ~~~r~l~V~~a~~~~~r~~~g~~g 175 (177)
+.|+|+|++.+..+..+.++|
T Consensus 83 ---~~l~V~~a~~~~~~~~~~~~G 103 (103)
T 2dng_A 83 ---RSLRVDIAEGRKQDKSGPSSG 103 (103)
T ss_dssp ---EECEEEECCCCCCCCSSCCCC
T ss_pred ---eEEEEEEecCCCCCCCCCCCC
Confidence 589999998876665544443
No 7
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=4.9e-22 Score=137.42 Aligned_cols=86 Identities=21% Similarity=0.441 Sum_probs=78.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.++ .+++++|||||+|.+.++|++|++.||+..|.+ +
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 85 (103)
T 2cq0_A 14 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDK---TTGQSKGFAFISFHRREDAARAIAGVSGFGYDH-----L 85 (103)
T ss_dssp SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECS---SSCSEEEEEEEEESSHHHHHHHHHHTTTCEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecC---CCCceeeEEEEEECCHHHHHHHHHHcCCCeeCC-----c
Confidence 37999999999999999999999999999999999886 578899999999999999999999999999976 5
Q ss_pred ceEEEeecCCCCCC
Q 030465 156 FLRLQFSRNPGPRS 169 (177)
Q Consensus 156 ~l~V~~a~~~~~r~ 169 (177)
.|+|+|++.+..+.
T Consensus 86 ~l~v~~a~~~~~~~ 99 (103)
T 2cq0_A 86 ILNVEWAKPSTNSG 99 (103)
T ss_dssp ECEEEESSCCCCSC
T ss_pred EEEEEECCCCCCCC
Confidence 89999998765554
No 8
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=7.3e-22 Score=136.54 Aligned_cols=90 Identities=21% Similarity=0.331 Sum_probs=79.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCC
Q 030465 75 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 154 (177)
Q Consensus 75 ~~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~ 154 (177)
.+.++|||+|||+++|+++|+++|++||.|.+|+|+.+ +++++|||||+|.+.++|++|++.||+..|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----- 82 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-----GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT----- 82 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-----SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSS-----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCC-----
Confidence 34799999999999999999999999999999999876 47788999999999999999999999999966
Q ss_pred cceEEEeecCCCCCCCCCCC
Q 030465 155 KFLRLQFSRNPGPRSVFGAR 174 (177)
Q Consensus 155 r~l~V~~a~~~~~r~~~g~~ 174 (177)
+.|+|+|++.+..+....+.
T Consensus 83 ~~l~V~~a~~~~~~~~~~~~ 102 (103)
T 2d9p_A 83 KPLYVALAQRKEERQSGPSS 102 (103)
T ss_dssp SBCEEEECSSCCCCCCCCCC
T ss_pred cEEEEEEecccccCCCCCCC
Confidence 48999999887666654433
No 9
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=2.2e-22 Score=139.16 Aligned_cols=87 Identities=22% Similarity=0.280 Sum_probs=79.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.++ .+++++|||||+|.+.++|++|++.||+..|.+ +
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 83 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREP---HTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDG-----R 83 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCS---SSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTT-----B
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCCCCeEEEEEECCHHHHHHHHHHcCCCEECC-----c
Confidence 37999999999999999999999999999999998886 568899999999999999999999999999976 5
Q ss_pred ceEEEeecCCCCCCC
Q 030465 156 FLRLQFSRNPGPRSV 170 (177)
Q Consensus 156 ~l~V~~a~~~~~r~~ 170 (177)
.|+|+|++...++..
T Consensus 84 ~l~V~~a~~~~~~~~ 98 (103)
T 2dnm_A 84 ELRVQVARYGRRDLS 98 (103)
T ss_dssp CCEEEECSSCCSCCC
T ss_pred EEEEEECCcCCCCCC
Confidence 799999987655544
No 10
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.7e-22 Score=139.38 Aligned_cols=90 Identities=18% Similarity=0.291 Sum_probs=81.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|+++|++||.|.+|+|+.++ .+++++|||||+|.+.++|++|++.||+..|.+ +.
T Consensus 12 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~~ 83 (102)
T 2cqb_A 12 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDY---ETEKHRGFAFVEFELAEDAAAAIDNMNESELFG-----RT 83 (102)
T ss_dssp CSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCS---SSCCCSSEEEECCSSHHHHHHHHHHHTTEEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecC---CCCCcceEEEEEECCHHHHHHHHHHhCCCEECC-----cE
Confidence 7999999999999999999999999999999998886 568899999999999999999999999999976 58
Q ss_pred eEEEeecCCCCCCCCCCC
Q 030465 157 LRLQFSRNPGPRSVFGAR 174 (177)
Q Consensus 157 l~V~~a~~~~~r~~~g~~ 174 (177)
|+|+|++.+..+....+.
T Consensus 84 l~V~~a~~~~~~~~~~~~ 101 (102)
T 2cqb_A 84 IRVNLAKPMRIKESGPSS 101 (102)
T ss_dssp EEEEECCCCCCCCCCCCC
T ss_pred EEEEeCCCCCCCCCCCCC
Confidence 999999887666654443
No 11
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=2.6e-22 Score=138.51 Aligned_cols=87 Identities=23% Similarity=0.334 Sum_probs=78.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|+++|++||.|.+|+|+.++ .+++++|||||+|.+.++|++|++.||+..|.+ +.
T Consensus 12 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~~ 83 (102)
T 1x5s_A 12 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDR---ETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG-----RQ 83 (102)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCS---SSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTS-----CC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCC---CCCCcccEEEEEECCHHHHHHHHHHhCCCEECC-----eE
Confidence 7999999999999999999999999999999999876 568899999999999999999999999999976 47
Q ss_pred eEEEeecCCCCCCCC
Q 030465 157 LRLQFSRNPGPRSVF 171 (177)
Q Consensus 157 l~V~~a~~~~~r~~~ 171 (177)
|+|+|++.+..+...
T Consensus 84 l~v~~a~~~~~~~~~ 98 (102)
T 1x5s_A 84 IRVDQAGKSSDNRSG 98 (102)
T ss_dssp CEEEEEECCCCCCCC
T ss_pred EEEEECCCCCCCCCC
Confidence 999999887555433
No 12
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=3.2e-22 Score=138.69 Aligned_cols=89 Identities=20% Similarity=0.304 Sum_probs=78.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCC-CCcceEEEEEecCHHHHHHHHHHhCCCeeCCCC
Q 030465 73 PPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRG-GDPLILCFVDFENPACAATALSALQGYRMDEDD 151 (177)
Q Consensus 73 p~~~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~-g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~ 151 (177)
+..+.++|||+|||+++|+++|+++|++|| |.+|+|+.++ .+ ++++|||||+|.+.++|++|+ .||+..|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~---~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g-- 83 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREP---SNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN-- 83 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCS---SCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT--
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCC---CCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC--
Confidence 334479999999999999999999999999 9999998876 44 889999999999999999999 999999966
Q ss_pred CCCcceEEEeecCCCCCCCC
Q 030465 152 PDSKFLRLQFSRNPGPRSVF 171 (177)
Q Consensus 152 ~~~r~l~V~~a~~~~~r~~~ 171 (177)
+.|+|+|++.+..+..+
T Consensus 84 ---~~l~V~~a~~~~~~~~~ 100 (104)
T 1wi8_A 84 ---KRIRVDVADQAQDKDSG 100 (104)
T ss_dssp ---EECEEEECCCCCCCCCC
T ss_pred ---cEEEEEEccCCCCCCCC
Confidence 58999999887655543
No 13
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.88 E-value=1.3e-22 Score=142.77 Aligned_cols=81 Identities=15% Similarity=0.148 Sum_probs=76.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|+++|++||.|.+|+|+.++ .+++++|||||+|++.++|++|++.||+..|.+ +.
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~---~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g-----r~ 77 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHP---RTRKHLGLARVLFTSTRGAKETVKNLHLTSVMG-----NI 77 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT---TTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT-----EE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECC---CCCceeeEEEEEECCHHHHHHHHHHhCCCEECC-----eE
Confidence 6899999999999999999999999999999999987 678999999999999999999999999999976 58
Q ss_pred eEEEeecCC
Q 030465 157 LRLQFSRNP 165 (177)
Q Consensus 157 l~V~~a~~~ 165 (177)
|+|++++..
T Consensus 78 i~V~~a~~~ 86 (110)
T 3s8s_A 78 IHAQLDIKG 86 (110)
T ss_dssp CEEEECSTT
T ss_pred EEEEECCCC
Confidence 999999654
No 14
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=7.3e-22 Score=137.21 Aligned_cols=87 Identities=26% Similarity=0.359 Sum_probs=78.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeec-CcccCCCCcceEEEEEecCHHHHHHHHHHh-CCCeeCCCCCC
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK-ESKLRGGDPLILCFVDFENPACAATALSAL-QGYRMDEDDPD 153 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~-~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l-~g~~l~~~~~~ 153 (177)
+.++|||+|||+++|+++|+++|++||.|..|+|+.+ + .+++++|||||+|.+.++|++|++.| |+..|.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g---- 86 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMT---GTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG---- 86 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCS---SSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS----
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCC---CCCCcCceEEEEECCHHHHHHHHHHhccCCeECC----
Confidence 3799999999999999999999999999999999887 4 56889999999999999999999999 9999976
Q ss_pred CcceEEEeecCCCCCCC
Q 030465 154 SKFLRLQFSRNPGPRSV 170 (177)
Q Consensus 154 ~r~l~V~~a~~~~~r~~ 170 (177)
+.|+|+|++.+..+..
T Consensus 87 -~~l~v~~a~~~~~~~~ 102 (107)
T 2cph_A 87 -RRLVLEWADSEVTVQS 102 (107)
T ss_dssp -CBCEEEECCCCCCCCC
T ss_pred -CEEEEEeCCCCCCCCC
Confidence 4899999988755543
No 15
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.88 E-value=1.2e-21 Score=135.81 Aligned_cols=88 Identities=23% Similarity=0.324 Sum_probs=78.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|+++|++||.|.+|+|+.++ +++++|||||+|.+.++|++|++.||+..+.+. .+++
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~----~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg--~~~~ 88 (105)
T 2dnh_A 15 DRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP----DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPG--ASSS 88 (105)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS----SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTT--CSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC----CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCC--CCcc
Confidence 7999999999999999999999999999999999885 588999999999999999999999999999762 1257
Q ss_pred eEEEeecCCCCCCC
Q 030465 157 LRLQFSRNPGPRSV 170 (177)
Q Consensus 157 l~V~~a~~~~~r~~ 170 (177)
|+|+|++.+..+..
T Consensus 89 l~V~~a~~~~~~~~ 102 (105)
T 2dnh_A 89 LVVKFADTDKESGP 102 (105)
T ss_dssp CEEEESCSSCCCSC
T ss_pred EEEEECccCcccCC
Confidence 99999988765543
No 16
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=4.6e-22 Score=136.53 Aligned_cols=89 Identities=22% Similarity=0.322 Sum_probs=80.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
+++|||+|||+++|+++|+++|++||.|.+|+|+.++ .+++++|||||+|.+.++|++|++.||+..|.+ +.
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~~ 79 (99)
T 1whw_A 8 SGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDS---LTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG-----RM 79 (99)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCT---TTCCCCSEEEEEESSHHHHHHHHHHTTTEESSS-----CE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecC---CCCCcCeEEEEEECCHHHHHHHHHHhCCCEECC-----cE
Confidence 7899999999999999999999999999999998876 578899999999999999999999999999976 48
Q ss_pred eEEEeecCCCCCCCCCC
Q 030465 157 LRLQFSRNPGPRSVFGA 173 (177)
Q Consensus 157 l~V~~a~~~~~r~~~g~ 173 (177)
|+|+|++.+..+...++
T Consensus 80 l~V~~a~~~~~~~~~~~ 96 (99)
T 1whw_A 80 LHVLPSTIKKEASQSGP 96 (99)
T ss_dssp EEEEECCCCSTTCCCCC
T ss_pred EEEEEcCCCcccccCCC
Confidence 99999988766554443
No 17
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=4.3e-22 Score=139.92 Aligned_cols=91 Identities=22% Similarity=0.354 Sum_probs=80.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEE--------EEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCee
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYK--------EVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRM 147 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~--------~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l 147 (177)
+.++|||+|||+++|+++|+++|++||.|. .|+|+.++ .+++++|||||+|.+.++|++|++.||+..|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~---~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDK---ETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCT---TTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeC---CCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 379999999999999999999999999998 69998876 5788999999999999999999999999999
Q ss_pred CCCCCCCcceEEEeecCCCCCCCCCCC
Q 030465 148 DEDDPDSKFLRLQFSRNPGPRSVFGAR 174 (177)
Q Consensus 148 ~~~~~~~r~l~V~~a~~~~~r~~~g~~ 174 (177)
.+ +.|+|+|++.+..+..+.+.
T Consensus 91 ~g-----~~l~V~~a~~~~~~~~~~~s 112 (113)
T 2cpe_A 91 QG-----SKLKVSLARKKPPMNSGPSS 112 (113)
T ss_dssp TT-----EECEEECSSCCCCSTTCCCC
T ss_pred CC-----CEEEEEECCCCCCCCCCCCC
Confidence 66 58999999887666554433
No 18
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.88 E-value=2.7e-22 Score=139.29 Aligned_cols=91 Identities=13% Similarity=0.173 Sum_probs=79.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.++ .+++++|||||+|.+.++|++|++.||+..+... .++
T Consensus 12 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~--~g~ 86 (106)
T 2dgp_A 12 DAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDR---FTGMHKGCAFLTYCERESALKAQSALHEQKTLPG--MNR 86 (106)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCS---SSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTT--CSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC---CCCCcceEEEEEECCHHHHHHHHHHhcCCcccCC--CCc
Confidence 37899999999999999999999999999999999887 5788999999999999999999999999887321 235
Q ss_pred ceEEEeecCCCCCCCC
Q 030465 156 FLRLQFSRNPGPRSVF 171 (177)
Q Consensus 156 ~l~V~~a~~~~~r~~~ 171 (177)
+|+|+|++.+..+..+
T Consensus 87 ~l~v~~a~~~~~~~~~ 102 (106)
T 2dgp_A 87 PIQVKPADSESRGGSG 102 (106)
T ss_dssp CCEEEECCCCSCCCCC
T ss_pred eEEEEECCcccccCCC
Confidence 8999999887655543
No 19
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.9e-22 Score=137.56 Aligned_cols=87 Identities=13% Similarity=0.265 Sum_probs=79.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEE-EEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEV-RLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v-~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+++|||+|||+++|+++|+++|++||.|.+| +|+.++ .+++++|||||+|.+.++|++|++.||+..|.+ +
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~---~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 76 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDP---DTGNSKGYAFINFASFDASDAAIEAMNGQYLCN-----R 76 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCT---TTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETT-----E
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcC---CCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC-----E
Confidence 7999999999999999999999999999999 998876 578899999999999999999999999999966 5
Q ss_pred ceEEEeecCCCCCCCC
Q 030465 156 FLRLQFSRNPGPRSVF 171 (177)
Q Consensus 156 ~l~V~~a~~~~~r~~~ 171 (177)
.|+|+|++.+..+..+
T Consensus 77 ~l~v~~a~~~~~~~~~ 92 (96)
T 1x5t_A 77 PITVSYAFKKDSKGSG 92 (96)
T ss_dssp ECEEEESCCCCCCCCC
T ss_pred EEEEEEecccCCCCCC
Confidence 8999999877665543
No 20
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.88 E-value=6.2e-22 Score=143.90 Aligned_cols=88 Identities=20% Similarity=0.380 Sum_probs=80.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCC
Q 030465 74 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 153 (177)
Q Consensus 74 ~~~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~ 153 (177)
+.+.++|||+|||+++|+++|+++|+.||.|.+|+|+.++ .+++++|||||+|.+.++|++|++.||+..|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---- 111 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDR---ETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILN---- 111 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEET---TTTEEEEEEEEEESSHHHHHHHHHHTTTEECSS----
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC---CCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----
Confidence 3447999999999999999999999999999999999887 568899999999999999999999999999976
Q ss_pred CcceEEEeecCCCCCC
Q 030465 154 SKFLRLQFSRNPGPRS 169 (177)
Q Consensus 154 ~r~l~V~~a~~~~~r~ 169 (177)
+.|+|+|++.+..+.
T Consensus 112 -~~l~v~~a~~~~~~~ 126 (139)
T 1u6f_A 112 -KRLKVALAASGHQRP 126 (139)
T ss_dssp -CEEEEEESSCCCCCC
T ss_pred -eEEEEEECCCCCCCC
Confidence 489999998876555
No 21
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=1.6e-21 Score=134.19 Aligned_cols=83 Identities=28% Similarity=0.521 Sum_probs=76.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|+++|++||.|.+|+|+.++ +++++|||||+|.+.++|++|++.||+..|.+ +.
T Consensus 17 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~----~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~~ 87 (100)
T 2do4_A 17 KHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR----AGKPKGLAYVEYENESQASQAVMKMDGMTIKE-----NI 87 (100)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT----TSCEEEEEEEEESSHHHHHHHHHHHTTEESSS-----CE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC----CCCEEeEEEEEECCHHHHHHHHHHhCCCEECC-----EE
Confidence 6899999999999999999999999999999999875 68899999999999999999999999999976 48
Q ss_pred eEEEeecCCCCC
Q 030465 157 LRLQFSRNPGPR 168 (177)
Q Consensus 157 l~V~~a~~~~~r 168 (177)
|+|+|++.+..+
T Consensus 88 l~v~~a~~~~~~ 99 (100)
T 2do4_A 88 IKVAISNSGPSS 99 (100)
T ss_dssp EEEEECCCCSCC
T ss_pred EEEEECCCCCCC
Confidence 999999776543
No 22
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=1.2e-21 Score=137.02 Aligned_cols=87 Identities=20% Similarity=0.359 Sum_probs=79.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhC------CCeeCC
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ------GYRMDE 149 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~------g~~l~~ 149 (177)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.++ .+++++|||||+|.+.++|++|++.|| +..|.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHP---DTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCS---SSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecC---CCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 37899999999999999999999999999999999887 578899999999999999999999999 999966
Q ss_pred CCCCCcceEEEeecCCCCCCC
Q 030465 150 DDPDSKFLRLQFSRNPGPRSV 170 (177)
Q Consensus 150 ~~~~~r~l~V~~a~~~~~r~~ 170 (177)
+.|+|+|++.+..+..
T Consensus 91 -----~~l~v~~a~~~~~~~~ 106 (111)
T 1x4h_A 91 -----RQLKVDLAVTRDEAAS 106 (111)
T ss_dssp -----CEEEEECCCCCCCCCC
T ss_pred -----EEEEEEECCCCccCCC
Confidence 4899999987755543
No 23
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.87 E-value=4.4e-22 Score=133.29 Aligned_cols=82 Identities=22% Similarity=0.319 Sum_probs=74.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+.++|||+|||+++|+++|+++|++||.|.+|+++.++ .+++++|||||+|.+.++|++|++.||+..+.+ +
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 76 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDM---ATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG-----R 76 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT---TTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT-----E
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecC---CCCccceEEEEEECCHHHHHHHHHHcCCCEECC-----e
Confidence 37899999999999999999999999999999999886 578899999999999999999999999999966 5
Q ss_pred ceEEEeecCC
Q 030465 156 FLRLQFSRNP 165 (177)
Q Consensus 156 ~l~V~~a~~~ 165 (177)
.|+|+|++.+
T Consensus 77 ~l~v~~a~~k 86 (87)
T 3bs9_A 77 QIRTNWATRK 86 (87)
T ss_dssp ECEEEEEC--
T ss_pred EEEEEecCCC
Confidence 8999999764
No 24
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=134.84 Aligned_cols=83 Identities=22% Similarity=0.356 Sum_probs=75.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhCCCCCEEE--------EEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCC
Q 030465 73 PPDASSTLYVEGLPADSTKREVAHIFRPFVGYKE--------VRLVIKESKLRGGDPLILCFVDFENPACAATALSALQG 144 (177)
Q Consensus 73 p~~~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~--------v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g 144 (177)
++.+.++|||+|||+++|+++|+++|++||.|.+ |+++.++ .+++++|||||+|.+.++|++|++.||+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~---~~g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDR---ETGKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECT---TTCSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecC---CCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 3444799999999999999999999999999999 9999886 5789999999999999999999999999
Q ss_pred CeeCCCCCCCcceEEEeec
Q 030465 145 YRMDEDDPDSKFLRLQFSR 163 (177)
Q Consensus 145 ~~l~~~~~~~r~l~V~~a~ 163 (177)
..|.+ +.|+|+||+
T Consensus 86 ~~~~g-----~~l~V~~A~ 99 (99)
T 2la6_A 86 KEFSG-----NPIKVSFAT 99 (99)
T ss_dssp CBSSS-----SBCEEEECC
T ss_pred CEeCC-----cEEEEEecC
Confidence 99976 589999984
No 25
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=5.3e-22 Score=135.96 Aligned_cols=89 Identities=24% Similarity=0.313 Sum_probs=77.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
+++|||+|||+++|+++|+++|++||.|..|+|+.++....+++++|||||+|.+.++|++|++.||+..|.+ +.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~~ 79 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG-----HK 79 (98)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC-----eE
Confidence 7899999999999999999999999999999999876211144789999999999999999999999999976 58
Q ss_pred eEEEeecCCCCCCC
Q 030465 157 LRLQFSRNPGPRSV 170 (177)
Q Consensus 157 l~V~~a~~~~~r~~ 170 (177)
|+|+|++.+..+..
T Consensus 80 l~V~~a~~~~~~~~ 93 (98)
T 2cpf_A 80 LEVRISERATKPAS 93 (98)
T ss_dssp CEEECSSCSSCCCC
T ss_pred EEEEEccCCCCCCC
Confidence 99999987655443
No 26
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.87 E-value=4.5e-22 Score=142.36 Aligned_cols=85 Identities=20% Similarity=0.341 Sum_probs=77.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|+++|++||.|.+|+|+.++ .+++++|||||+|.+.++|++|++.||+..|.+ +.
T Consensus 22 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~~ 93 (126)
T 3ex7_B 22 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDR---RTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG-----QP 93 (126)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCT---TTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSS-----SB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC---CCCccceEEEEEECCHHHHHHHHHHhCCCeeCC-----eE
Confidence 7899999999999999999999999999999998886 578899999999999999999999999999966 48
Q ss_pred eEEEeecCCCCCC
Q 030465 157 LRLQFSRNPGPRS 169 (177)
Q Consensus 157 l~V~~a~~~~~r~ 169 (177)
|+|+|++.+.++.
T Consensus 94 l~v~~a~~~~~~~ 106 (126)
T 3ex7_B 94 ISVDWCFVRGPPK 106 (126)
T ss_dssp CEEEESEESSSCC
T ss_pred EEEEEecCCCCCC
Confidence 9999998764433
No 27
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2.3e-21 Score=135.41 Aligned_cols=84 Identities=25% Similarity=0.471 Sum_probs=74.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+.++|||+|||+++|+++|+++|++||.|..|+|..+ +.++|||||+|.+.++|++|++.||+..|.+ +
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 89 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR------RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG-----Y 89 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS------SSSSCCEEEEESCHHHHHHHHHHHTTCEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC------CCCCcEEEEEECCHHHHHHHHHHcCCCEECC-----e
Confidence 3789999999999999999999999999999998554 3478899999999999999999999999966 5
Q ss_pred ceEEEeecCCCCCCC
Q 030465 156 FLRLQFSRNPGPRSV 170 (177)
Q Consensus 156 ~l~V~~a~~~~~r~~ 170 (177)
.|+|+|++.+..+..
T Consensus 90 ~l~V~~a~~~~~~~~ 104 (109)
T 1x4a_A 90 RLRVEFPRSGRGTGS 104 (109)
T ss_dssp ECEEECCCCCCCCCC
T ss_pred EEEEEEcccCCCCCC
Confidence 899999987655443
No 28
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.8e-21 Score=134.59 Aligned_cols=86 Identities=24% Similarity=0.391 Sum_probs=76.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.++ ..++|||||+|.+.++|++|++.||+..|.+ +
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 83 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH-----TSNDPYCFVEFYEHRDAAAALAAMNGRKILG-----K 83 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC-----CSSCCEEEEEESSHHHHHHHHHHHTTEEETT-----E
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC-----CCCCCEEEEEECCHHHHHHHHHHhCCCCcCC-----C
Confidence 37999999999999999999999999999999999875 2257899999999999999999999999976 5
Q ss_pred ceEEEeecCCCCCCCC
Q 030465 156 FLRLQFSRNPGPRSVF 171 (177)
Q Consensus 156 ~l~V~~a~~~~~r~~~ 171 (177)
.|+|+|++.+..+...
T Consensus 84 ~l~V~~a~~~~~~~~~ 99 (103)
T 2cqi_A 84 EVKVNWATTPSSQKSG 99 (103)
T ss_dssp EEEEEECCCTTCCCCC
T ss_pred eEEEEECCCCcccccC
Confidence 8999999887655543
No 29
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=2.1e-21 Score=133.91 Aligned_cols=88 Identities=26% Similarity=0.377 Sum_probs=76.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+.++|||+|||+++|+++|+++|+.|. .|+++.++ .+++++|||||+|.+.++|++|++.||+..|.+ +
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 82 (102)
T 2fc8_A 14 PSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDR---ETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG-----N 82 (102)
T ss_dssp CCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECS---SSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecC---CCCCcCcEEEEEECCHHHHHHHHHHhCCCeECC-----e
Confidence 379999999999999999999999874 56777775 568899999999999999999999999999976 5
Q ss_pred ceEEEeecCCCCCCCCCCC
Q 030465 156 FLRLQFSRNPGPRSVFGAR 174 (177)
Q Consensus 156 ~l~V~~a~~~~~r~~~g~~ 174 (177)
.|+|+|++.+..++.+++.
T Consensus 83 ~l~V~~a~~~~~~~~~~~~ 101 (102)
T 2fc8_A 83 KVTLDWAKPKGEGGSGPSS 101 (102)
T ss_dssp ECEEEECCCCCSSSCSCCC
T ss_pred EEEEEEecCCCCCCCCCCC
Confidence 8999999887666654433
No 30
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=3.6e-21 Score=133.05 Aligned_cols=85 Identities=20% Similarity=0.270 Sum_probs=76.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.++ ..++|||||+|.+.++|++|++.||+..|.+ +
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 83 (103)
T 2cq3_A 14 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE-----RGSKGFGFVTFENSADADRAREKLHGTVVEG-----R 83 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCT-----TTTCCEEEEEESCHHHHHHHHHHHTTCEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC-----CCCcEEEEEEECCHHHHHHHHHHhCCCEECC-----E
Confidence 37999999999999999999999999999999999875 2378999999999999999999999999966 5
Q ss_pred ceEEEeecCCCCCCC
Q 030465 156 FLRLQFSRNPGPRSV 170 (177)
Q Consensus 156 ~l~V~~a~~~~~r~~ 170 (177)
.|+|+|++.+..+..
T Consensus 84 ~l~v~~a~~~~~~~~ 98 (103)
T 2cq3_A 84 KIEVNNATARVMTNS 98 (103)
T ss_dssp ECEEEECCSSCCCCC
T ss_pred EEEEEEcccCCCCCC
Confidence 899999988755554
No 31
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.87 E-value=9.4e-22 Score=142.08 Aligned_cols=86 Identities=27% Similarity=0.389 Sum_probs=78.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCC
Q 030465 75 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 154 (177)
Q Consensus 75 ~~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~ 154 (177)
+++++|||+|||+++|+++|+++|++||.|.+|+|+.++ .+++++|||||+|.+.++|++|++.||+..|.+
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~---~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g----- 115 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQ---QSRRSRGFAFVYFENVDDAKEAKERANGMELDG----- 115 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCS---SSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSS-----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC---CCCccceEEEEEECCHHHHHHHHHHhCCCEECC-----
Confidence 347999999999999999999999999999999999887 578899999999999999999999999999976
Q ss_pred cceEEEeecCCCCC
Q 030465 155 KFLRLQFSRNPGPR 168 (177)
Q Consensus 155 r~l~V~~a~~~~~r 168 (177)
+.|+|+|++.+.++
T Consensus 116 ~~l~V~~a~~~~p~ 129 (129)
T 2kxn_B 116 RRIRVDFSITKRPH 129 (129)
T ss_dssp SCCEESCCSSSSCC
T ss_pred EEEEEEEecCCCCC
Confidence 47999999876543
No 32
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=8e-22 Score=135.31 Aligned_cols=87 Identities=21% Similarity=0.398 Sum_probs=76.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEE-EEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCC
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYK-EVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 154 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~-~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~ 154 (177)
++++|||+|||+++|+++|+++|++||.|. +|+|+.++ .+++++|||||+|.+.++|++|++.||+..+.+... .
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~---~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~-~ 83 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNR---LTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATP-A 83 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECS---SSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSS-C
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecC---CCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCc-c
Confidence 379999999999999999999999999999 99999887 678899999999999999999999999999977510 1
Q ss_pred cceEEEeecCCC
Q 030465 155 KFLRLQFSRNPG 166 (177)
Q Consensus 155 r~l~V~~a~~~~ 166 (177)
++|+|+|++...
T Consensus 84 ~~l~v~~a~~~~ 95 (99)
T 2div_A 84 KRFKLNYATYSG 95 (99)
T ss_dssp EECCEEETTCCS
T ss_pred eeEEEeecCCCC
Confidence 229999997653
No 33
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.87 E-value=2.5e-21 Score=137.00 Aligned_cols=81 Identities=26% Similarity=0.505 Sum_probs=74.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCC
Q 030465 75 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 154 (177)
Q Consensus 75 ~~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~ 154 (177)
.+.++|||+|||+++|+++|+++|++||.|.+|+|+.++ .+++++|||||+|.+.++|++|++.||+..|.+
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~---~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----- 109 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDK---QTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGT----- 109 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCS---SSSCCCCEEEEEEESSHHHHHHHHHCCCCEETT-----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCCcCcEEEEEECCHHHHHHHHHHcCCCEECC-----
Confidence 347899999999999999999999999999999999886 578899999999999999999999999999976
Q ss_pred cceEEEeec
Q 030465 155 KFLRLQFSR 163 (177)
Q Consensus 155 r~l~V~~a~ 163 (177)
+.|+|+|+|
T Consensus 110 ~~l~V~~ak 118 (118)
T 2khc_A 110 KRLKVQLKK 118 (118)
T ss_dssp EECCEEEC-
T ss_pred EEEEEEecC
Confidence 589999985
No 34
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.5e-21 Score=132.69 Aligned_cols=81 Identities=23% Similarity=0.317 Sum_probs=75.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
++++|||+|||+++|+++|+++|++||.|.+|+++.++ .+++++|||||+|.+.++|++|++.||+..|.+ +
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 85 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQ---QSRRSRGFAFVYFENVDDAKEAKERANGMELDG-----R 85 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECS---SSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT-----E
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcC---CCCCcccEEEEEECCHHHHHHHHHHhCCCEECC-----E
Confidence 37999999999999999999999999999999999887 568899999999999999999999999999966 5
Q ss_pred ceEEEeecC
Q 030465 156 FLRLQFSRN 164 (177)
Q Consensus 156 ~l~V~~a~~ 164 (177)
+|+|+|++.
T Consensus 86 ~l~v~~a~~ 94 (95)
T 2cqc_A 86 RIRVSGPSS 94 (95)
T ss_dssp EEEEECCSC
T ss_pred EEEEEecCC
Confidence 899999864
No 35
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.8e-21 Score=132.20 Aligned_cols=79 Identities=18% Similarity=0.284 Sum_probs=74.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|+++|++||.|.+|+++.++ .+++++|||||+|.+.++|++|++.||+..|.+ +.
T Consensus 16 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~~ 87 (94)
T 2e5h_A 16 KSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDK---DTRKSKGVAFILFLDKDSAQNCTRAINNKQLFG-----RV 87 (94)
T ss_dssp TTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCS---SSCCCTTCEEEEESCHHHHHHHHHHTTTEEETT-----EE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCC---CCCCcccEEEEEECCHHHHHHHHHHcCCCeeCC-----cE
Confidence 7899999999999999999999999999999999887 568889999999999999999999999999976 58
Q ss_pred eEEEeec
Q 030465 157 LRLQFSR 163 (177)
Q Consensus 157 l~V~~a~ 163 (177)
|+|+||+
T Consensus 88 l~v~~ak 94 (94)
T 2e5h_A 88 IKASIAI 94 (94)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9999985
No 36
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.1e-21 Score=136.13 Aligned_cols=84 Identities=20% Similarity=0.348 Sum_probs=77.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
++++|||+|||+++|+++|+++|++||.|.+|+|+.++ .+++++|||||+|.+.++|++|++.||+..|.+ +
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 93 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDR---RTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG-----Q 93 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT---TTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSS-----S
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecC---CCCceeeEEEEEECCHHHHHHHHHHhcCCEECC-----c
Confidence 36899999999999999999999999999999999887 578899999999999999999999999999976 4
Q ss_pred ceEEEeecCCCC
Q 030465 156 FLRLQFSRNPGP 167 (177)
Q Consensus 156 ~l~V~~a~~~~~ 167 (177)
.|+|+|++.+++
T Consensus 94 ~l~V~~a~~~~~ 105 (106)
T 1p27_B 94 PISVDWCFVRGP 105 (106)
T ss_dssp BCEEEESEESSC
T ss_pred EEEEEeecCCCC
Confidence 899999987654
No 37
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.87 E-value=3.4e-22 Score=137.32 Aligned_cols=80 Identities=16% Similarity=0.352 Sum_probs=72.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCC--EEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCe----eCCC
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVG--YKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYR----MDED 150 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~--i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~----l~~~ 150 (177)
-+||||+|||+++|+++|+++|++||. +.+|+++.++ .++++||||||+|.+.++|++|++.||+.. |++
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~---~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G- 84 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDK---QTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG- 84 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCS---SSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT-
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecC---CCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC-
Confidence 689999999999999999999999995 5689998887 678999999999999999999999999974 654
Q ss_pred CCCCcceEEEeecC
Q 030465 151 DPDSKFLRLQFSRN 164 (177)
Q Consensus 151 ~~~~r~l~V~~a~~ 164 (177)
|+|+|+||++
T Consensus 85 ----r~i~V~~Aks 94 (95)
T 2lkz_A 85 ----KTIGVDFAKS 94 (95)
T ss_dssp ----EEEEEEECCC
T ss_pred ----EEEEEEEccC
Confidence 6899999975
No 38
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.87 E-value=2.8e-21 Score=136.15 Aligned_cols=86 Identities=21% Similarity=0.325 Sum_probs=78.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.++ .+++++|||||+|.+.++|++|++.||+..|.+ +
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 85 (115)
T 2dgo_A 14 NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDM---ATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG-----R 85 (115)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT---TTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT-----E
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC---CCCCcceEEEEEECCHHHHHHHHHHhCCCEECC-----E
Confidence 37999999999999999999999999999999999886 578899999999999999999999999999976 5
Q ss_pred ceEEEeecCCCCCC
Q 030465 156 FLRLQFSRNPGPRS 169 (177)
Q Consensus 156 ~l~V~~a~~~~~r~ 169 (177)
.|+|+|++.+..+.
T Consensus 86 ~l~V~~a~~~~~~~ 99 (115)
T 2dgo_A 86 QIRTNWATRKPPAP 99 (115)
T ss_dssp ECEEEESSCCCCCS
T ss_pred EEEEEEccCCCCCC
Confidence 89999998765443
No 39
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.86 E-value=1.8e-21 Score=137.97 Aligned_cols=86 Identities=23% Similarity=0.415 Sum_probs=77.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCC
Q 030465 75 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 154 (177)
Q Consensus 75 ~~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~ 154 (177)
++.++|||+|||+++|+++|+++|++||.|.+|+|+.++ +++++|||||+|.+.++|++|++.||+..|.+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~----~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g----- 75 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR----TSKSRGFAFITFENPADAKNAAKDMNGKSLHG----- 75 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST----TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSS-----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC----CCCcccEEEEEECCHHHHHHHHHHhCCCEECC-----
Confidence 347899999999999999999999999999999999875 68899999999999999999999999999966
Q ss_pred cceEEEeecCCCCCC
Q 030465 155 KFLRLQFSRNPGPRS 169 (177)
Q Consensus 155 r~l~V~~a~~~~~r~ 169 (177)
+.|+|+|++.+..+.
T Consensus 76 ~~l~V~~a~~~~~~~ 90 (116)
T 2fy1_A 76 KAIKVEQAKKPSFQS 90 (116)
T ss_dssp SBCEEEECCCSSCSS
T ss_pred EEEEEEECCCCCCCC
Confidence 489999998764433
No 40
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.86 E-value=1e-21 Score=138.93 Aligned_cols=83 Identities=17% Similarity=0.305 Sum_probs=74.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
+.+|||+|||+++|+++|+++|++||.|.+|+|+.++ +.++|||||+|.+.++|++|++.||+..|.+ +.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~-----~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g-----~~ 74 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-----NGSKGYGFVHFETQEAAERAIEKMNGMLLND-----RK 74 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-----TEEEEEEEEEESCHHHHHHHHHHHTTCEETT-----EE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC-----CCCCceEEEEECCHHHHHHHHHHcCCCEECC-----EE
Confidence 5789999999999999999999999999999999875 3478999999999999999999999999966 58
Q ss_pred eEEEeecCCCCCC
Q 030465 157 LRLQFSRNPGPRS 169 (177)
Q Consensus 157 l~V~~a~~~~~r~ 169 (177)
|+|++++.+..+.
T Consensus 75 i~V~~a~~~~~~~ 87 (115)
T 4f25_A 75 VFVGRFKSRKERE 87 (115)
T ss_dssp CEEEESSCCCC--
T ss_pred EEEEECCCccccc
Confidence 9999998765443
No 41
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.86 E-value=2.5e-21 Score=128.47 Aligned_cols=82 Identities=20% Similarity=0.353 Sum_probs=75.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
+.+|||+|||+++|+++|+++|++||.|.+++++.++ .+++++|||||+|.+.++|++|++.||+..+.+ +.
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g-----~~ 72 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDM---QTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG-----RP 72 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECT---TTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT-----EE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcC---CCCCccceEEEEECCHHHHHHHHHHhcCCeeCC-----cE
Confidence 3689999999999999999999999999999999886 578899999999999999999999999999966 58
Q ss_pred eEEEeecCCC
Q 030465 157 LRLQFSRNPG 166 (177)
Q Consensus 157 l~V~~a~~~~ 166 (177)
|+|+|++.+.
T Consensus 73 l~v~~a~~~~ 82 (83)
T 3md1_A 73 LRINWAAKLE 82 (83)
T ss_dssp CEEEECCCCC
T ss_pred EEEEecCcCC
Confidence 9999997653
No 42
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=2.8e-21 Score=135.75 Aligned_cols=85 Identities=18% Similarity=0.221 Sum_probs=75.8
Q ss_pred CCeEEEcCCCCCCCHHHHH---HhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCC
Q 030465 77 SSTLYVEGLPADSTKREVA---HIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 153 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~---~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~ 153 (177)
.++|||+|||+++++++|+ ++|++||.|.+|+|+.++.....++++|||||+|.+.++|++|++.||+..|.+
T Consensus 15 ~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g---- 90 (111)
T 2cpi_A 15 KNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG---- 90 (111)
T ss_dssp SSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT----
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC----
Confidence 6899999999999999999 999999999999998876332334677999999999999999999999999966
Q ss_pred CcceEEEeecCCC
Q 030465 154 SKFLRLQFSRNPG 166 (177)
Q Consensus 154 ~r~l~V~~a~~~~ 166 (177)
++|+|+||+++.
T Consensus 91 -r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 -RTLKASLGTTKY 102 (111)
T ss_dssp -EEEEEESCCCCS
T ss_pred -EEEEEEeccccc
Confidence 589999998764
No 43
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.86 E-value=1e-22 Score=138.48 Aligned_cols=83 Identities=19% Similarity=0.269 Sum_probs=74.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCC-CEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhC-CCeeCCCCCCC
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFV-GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ-GYRMDEDDPDS 154 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G-~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~-g~~l~~~~~~~ 154 (177)
+++|||+|||+++||++|+++|++|| .|.+|+|+.++ .+++++|||||+|.+.++|++|++.++ +..+.+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~---~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g----- 72 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNK---SSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG----- 72 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCS---SSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT-----
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecC---CCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC-----
Confidence 47999999999999999999999999 79999999887 678999999999999999999999874 567855
Q ss_pred cceEEEeecCCCC
Q 030465 155 KFLRLQFSRNPGP 167 (177)
Q Consensus 155 r~l~V~~a~~~~~ 167 (177)
|+|+|+||++++.
T Consensus 73 r~i~V~~a~~~~~ 85 (91)
T 2lxi_A 73 QKVSMHYSDPKPK 85 (91)
T ss_dssp EEEEEECCCSCCC
T ss_pred EEEEEEEcCCCCC
Confidence 5899999976544
No 44
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=9.9e-21 Score=132.98 Aligned_cols=84 Identities=17% Similarity=0.234 Sum_probs=76.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
+++|||+|||+++|+++|+++|++||.|.+|+|+.++ +++++|||||+|.+.++|++|++.||+..|.+ +.
T Consensus 15 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~----~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~~ 85 (114)
T 2do0_A 15 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK----DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFD-----RP 85 (114)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT----TCSEEEEEEEEESSHHHHHHHHHHHTTCEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC----CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC-----CE
Confidence 7899999999999999999999999999999999886 48899999999999999999999999999966 58
Q ss_pred eEEEeecCCCCCC
Q 030465 157 LRLQFSRNPGPRS 169 (177)
Q Consensus 157 l~V~~a~~~~~r~ 169 (177)
|+|+|++...++.
T Consensus 86 l~v~~a~~~~~~~ 98 (114)
T 2do0_A 86 MHVKMDERALPKG 98 (114)
T ss_dssp CEEEECSCCCCCS
T ss_pred EEEEEcccCCCCC
Confidence 9999997654443
No 45
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.86 E-value=1.5e-21 Score=130.19 Aligned_cols=80 Identities=20% Similarity=0.375 Sum_probs=74.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+.++|||+|||+++|+++|+++|++||.|.+|+++.++ .+++++|||||+|.+.++|++|++.||+..+.+ +
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 77 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDY---ETEKHRGFAFVEFELAEDAAAAIDNMNESELFG-----R 77 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEET---TTTEECSEEEEEESSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECC---CCCccccEEEEEECCHHHHHHHHHHhCCCEECC-----c
Confidence 37999999999999999999999999999999998876 568889999999999999999999999999966 5
Q ss_pred ceEEEeec
Q 030465 156 FLRLQFSR 163 (177)
Q Consensus 156 ~l~V~~a~ 163 (177)
.|+|+||+
T Consensus 78 ~l~v~~ak 85 (85)
T 3mdf_A 78 TIRVNLAK 85 (85)
T ss_dssp ECEEEECC
T ss_pred EEEEEEcC
Confidence 89999985
No 46
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.86 E-value=2.2e-21 Score=132.58 Aligned_cols=82 Identities=21% Similarity=0.476 Sum_probs=76.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
+++|||+|||+++++++|+++|++||.|.+|+++.++ .+++++|||||+|.+.++|++|++.||+..+.+ +.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-----~~ 73 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDP---QTGRSKGYAFIEFRDLESSASAVRNLNGYQLGS-----RF 73 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCT---TTCCBCSEEEEEESSHHHHHHHHHHHTTCEETT-----EE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCccceEEEEEECCHHHHHHHHHHhCCCeECC-----eE
Confidence 6899999999999999999999999999999998886 568899999999999999999999999999976 58
Q ss_pred eEEEeecCCC
Q 030465 157 LRLQFSRNPG 166 (177)
Q Consensus 157 l~V~~a~~~~ 166 (177)
|+|+|++.+.
T Consensus 74 l~V~~a~~~~ 83 (96)
T 2x1f_A 74 LKCGYSSNSD 83 (96)
T ss_dssp CEEEECSCSS
T ss_pred EEEEEcCCCC
Confidence 9999997653
No 47
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.86 E-value=4.1e-21 Score=129.96 Aligned_cols=82 Identities=20% Similarity=0.312 Sum_probs=74.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+.++|||+|||+++|+++|+++|++||.|..|+|+.+ +++++|||||+|.+.++|++|++.||+..|.+ +
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-----~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g-----~ 76 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-----NGKSKGCGVVKFESPEVAERACRMMNGMKLSG-----R 76 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-----SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTT-----B
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-----CCCcceEEEEEECCHHHHHHHHHHhCCCEECC-----c
Confidence 3799999999999999999999999999999999874 47889999999999999999999999999976 4
Q ss_pred ceEEEeecCCCC
Q 030465 156 FLRLQFSRNPGP 167 (177)
Q Consensus 156 ~l~V~~a~~~~~ 167 (177)
.|+|+|++.+..
T Consensus 77 ~l~v~~a~~~~~ 88 (92)
T 2dgv_A 77 EIDVRIDRNASG 88 (92)
T ss_dssp CCCCEECSCCSS
T ss_pred EEEEEEcCCCCC
Confidence 799999977543
No 48
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.6e-21 Score=137.67 Aligned_cols=88 Identities=13% Similarity=0.169 Sum_probs=78.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+.++|||+|||+++|+++|+++|++||.|..|+|+.++ .+++++|||||+|.+.++|++|++. ++..|.+ +
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~---~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g-----~ 96 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDP---ASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDG-----R 96 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCT---TTSSCCSEEEEECSSHHHHHHHHTS-CSEEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC---CCCCcCceEEEEeCCHHHHHHHHHh-CCcEECC-----E
Confidence 36899999999999999999999999999999999886 5788999999999999999999988 9999966 5
Q ss_pred ceEEEeecCCCCCCCCC
Q 030465 156 FLRLQFSRNPGPRSVFG 172 (177)
Q Consensus 156 ~l~V~~a~~~~~r~~~g 172 (177)
.|+|+|++.+..+...+
T Consensus 97 ~l~V~~a~~~~~~~~~~ 113 (116)
T 1x4b_A 97 VVEPKRAVAREESGSGP 113 (116)
T ss_dssp EEEEECCSSCCCCCCSC
T ss_pred EEEEEECCCCccCCCCC
Confidence 89999998876655443
No 49
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=2.2e-21 Score=134.52 Aligned_cols=87 Identities=17% Similarity=0.292 Sum_probs=78.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.++ .+++++|||||+|.+.++|++|++. |+..|.+ +
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g-----~ 85 (105)
T 2dh8_A 15 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDK---TTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG-----R 85 (105)
T ss_dssp SSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECS---SSCCEEEEEEEEESSTTHHHHHHHH-CSEEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC---CCCCcceEEEEEECCHHHHHHHHHh-CCCeECC-----E
Confidence 37999999999999999999999999999999999986 5788999999999999999999998 9999976 5
Q ss_pred ceEEEeecCCCCCCCC
Q 030465 156 FLRLQFSRNPGPRSVF 171 (177)
Q Consensus 156 ~l~V~~a~~~~~r~~~ 171 (177)
.|+|+|++.+..+..+
T Consensus 86 ~l~V~~a~~~~~~~~~ 101 (105)
T 2dh8_A 86 NIDPKPCTPRGMQPSG 101 (105)
T ss_dssp EEBCCCSCCSSCCTTC
T ss_pred EEEEEEccCCCCCCCC
Confidence 8999999877555543
No 50
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.85 E-value=4.8e-21 Score=141.96 Aligned_cols=85 Identities=22% Similarity=0.371 Sum_probs=78.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.++ .+++++|||||+|.+.++|++||+.||+..|.+ +
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-----~ 109 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDK---MKKTACGFCFVEYYSRADAENAMRYINGTRLDD-----R 109 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT---TTCCEEEEEEEEESSHHHHHHHHHHTTTSEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC---CCCccceEEEEEECCHHHHHHHHHHhCCCEECC-----e
Confidence 37999999999999999999999999999999999987 578899999999999999999999999999966 5
Q ss_pred ceEEEeecCCCCC
Q 030465 156 FLRLQFSRNPGPR 168 (177)
Q Consensus 156 ~l~V~~a~~~~~r 168 (177)
.|+|+|++.+.++
T Consensus 110 ~l~V~~a~~~~~~ 122 (156)
T 1h2v_Z 110 IIRTDWDAGFKEG 122 (156)
T ss_dssp ECEEEEESCCCTT
T ss_pred EEEEEECCCCCCc
Confidence 8999999876443
No 51
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.85 E-value=2.1e-21 Score=135.69 Aligned_cols=85 Identities=20% Similarity=0.336 Sum_probs=77.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
++++|||+|||+++|+++|+++|++||.|.+|+|+.++ .+++++|||||+|.+.++|++|++.||+..|.+ +
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-----~ 96 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDR---RTGFSKGYALVEYETHKQALAAKEALNGAEIMG-----Q 96 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCT---TTSSBCSEEEEEESSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC---CCCCcceEEEEEECCHHHHHHHHHHcCCCEECC-----c
Confidence 36899999999999999999999999999999998876 578899999999999999999999999999966 5
Q ss_pred ceEEEeecCCCCC
Q 030465 156 FLRLQFSRNPGPR 168 (177)
Q Consensus 156 ~l~V~~a~~~~~r 168 (177)
.|+|+|++.+.++
T Consensus 97 ~l~V~~a~~~~~~ 109 (110)
T 1oo0_B 97 TIQVDWCFVKGPK 109 (110)
T ss_dssp ECEEEESEESSCC
T ss_pred EEEEEEcccCCCC
Confidence 8999999876544
No 52
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.85 E-value=8.2e-21 Score=132.94 Aligned_cols=82 Identities=23% Similarity=0.455 Sum_probs=76.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+.++|||+|||+++|+++|+++|++||.|.+|+++.++ .+++++|||||+|.+.++|++|++.||+..|.+ +
T Consensus 25 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~---~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g-----~ 96 (108)
T 2jrs_A 25 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDS---ETGRSKGYGFITFSDSECAKKALEQLNGFELAG-----R 96 (108)
T ss_dssp SCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEET---TTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSS-----S
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC---CCCccceEEEEEECCHHHHHHHHHHcCCCEECC-----E
Confidence 37899999999999999999999999999999999886 578899999999999999999999999999976 4
Q ss_pred ceEEEeecCC
Q 030465 156 FLRLQFSRNP 165 (177)
Q Consensus 156 ~l~V~~a~~~ 165 (177)
.|+|+|++.+
T Consensus 97 ~l~V~~a~~k 106 (108)
T 2jrs_A 97 PMKVGHVTER 106 (108)
T ss_dssp CCEEECSCSS
T ss_pred EEEEEEcccC
Confidence 7999999765
No 53
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.5e-21 Score=137.36 Aligned_cols=89 Identities=26% Similarity=0.402 Sum_probs=73.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCC
Q 030465 75 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 154 (177)
Q Consensus 75 ~~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~ 154 (177)
.++++|||+|||+++|+++|+++|++||.|..+.+..+. .+++++|||||+|.+.++|++|++.||+..|.+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~---~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----- 94 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRM---MTGRMRGQAFITFPNKEIAWQALHLVNGYKLYG----- 94 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEE---ECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSS-----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEc---CCCccceEEEEEECCHHHHHHHHHHhCCCEeCC-----
Confidence 347999999999999999999999999998433222221 246788999999999999999999999999966
Q ss_pred cceEEEeecCCCCCCCC
Q 030465 155 KFLRLQFSRNPGPRSVF 171 (177)
Q Consensus 155 r~l~V~~a~~~~~r~~~ 171 (177)
+.|+|+|++.+..+...
T Consensus 95 ~~l~v~~a~~~~~~~~~ 111 (115)
T 2cpx_A 95 KILVIEFGKNKKQRSSG 111 (115)
T ss_dssp CBCEEEECCCCSCCCCC
T ss_pred cEEEEEEccCCCCCCCC
Confidence 48999999887665543
No 54
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.85 E-value=6.9e-22 Score=133.76 Aligned_cols=83 Identities=12% Similarity=0.138 Sum_probs=70.5
Q ss_pred CeEEEcCCCCCCCHHHHHHhhCCCC--CEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 78 STLYVEGLPADSTKREVAHIFRPFV--GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 78 ~tLfV~nLp~~~te~~L~~lF~~~G--~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
.+|||+|||+++|+++|+++|++|| .|.+++++.++ .+|+++|||||+|.+.++|++|++.||+..|.+ +
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~---~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~g-----r 73 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENR---ANGQSKGFALVGVGSEASSKKLMDLLPKRELHG-----Q 73 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECT---TTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSS-----C
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecC---CCCccCcEEEEEECCHHHHHHHHHHcCCCeeCC-----E
Confidence 5799999999999999999999999 99999999987 678999999999999999999999999999976 5
Q ss_pred ceEEEeecCCCCC
Q 030465 156 FLRLQFSRNPGPR 168 (177)
Q Consensus 156 ~l~V~~a~~~~~r 168 (177)
.|+|++++.+.+.
T Consensus 74 ~i~V~~~~~~~~~ 86 (90)
T 3p5t_L 74 NPVVTPSNKLEHH 86 (90)
T ss_dssp CCEECCC------
T ss_pred EEEEEECCCCccc
Confidence 7999999876443
No 55
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.85 E-value=2.8e-21 Score=129.50 Aligned_cols=84 Identities=23% Similarity=0.334 Sum_probs=75.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCC-CcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGG-DPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g-~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
.++|||+|||+++|+++|+++|++||.|.+|+++.++ .++ +++|||||+|.+.++|++|++.||+..+.+ +
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 75 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVER---MHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG-----Q 75 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEET---TEEEEECSEEEEEESSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCC---CCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECC-----e
Confidence 5899999999999999999999999999999998876 233 378999999999999999999999999976 5
Q ss_pred ceEEEeecCCCCC
Q 030465 156 FLRLQFSRNPGPR 168 (177)
Q Consensus 156 ~l~V~~a~~~~~r 168 (177)
.|+|++++.+.+|
T Consensus 76 ~l~v~~a~~~~~R 88 (88)
T 4a8x_A 76 EITATAVLAPWPR 88 (88)
T ss_dssp ECEEEEECCCCCC
T ss_pred EEEEEECCCCCCC
Confidence 8999999876554
No 56
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=5e-21 Score=133.09 Aligned_cols=77 Identities=12% Similarity=0.151 Sum_probs=68.7
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCC--eeCCCC
Q 030465 75 DASSTLYVEGLPA-DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY--RMDEDD 151 (177)
Q Consensus 75 ~~~~tLfV~nLp~-~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~--~l~~~~ 151 (177)
+++++|||+|||+ ++|+++|+++|++||.|.+|+|+.++ +||||+|++.++|++|++.||+. .|.+
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k---------g~aFVef~~~~~A~~Ai~~l~~~~~~~~G-- 81 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI---------NEAFIEMATTEDAQAAVDYYTTTPALVFG-- 81 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS---------SCEEEEESSHHHHHHHHHHHHHSCCEETT--
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC---------CEEEEEECCHHHHHHHHHHHcCCCceECC--
Confidence 3479999999999 99999999999999999999998654 59999999999999999999865 4755
Q ss_pred CCCcceEEEeecCC
Q 030465 152 PDSKFLRLQFSRNP 165 (177)
Q Consensus 152 ~~~r~l~V~~a~~~ 165 (177)
|+|+|+||+..
T Consensus 82 ---r~l~V~~a~~~ 92 (102)
T 1x4d_A 82 ---KPVRVHLSQKY 92 (102)
T ss_dssp ---EECEEEEECCC
T ss_pred ---cEEEEEECCCC
Confidence 68999999854
No 57
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=9.9e-21 Score=127.84 Aligned_cols=82 Identities=21% Similarity=0.367 Sum_probs=73.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+.++|||+|||+++|+++|+++|++||.|.+|+++ ++||||+|.+.++|++|++.||+..|.+ +
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 70 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----------KNYGFVHIEDKTAAEDAIRNLHHYKLHG-----V 70 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----------TTEEEEEESSHHHHHHHHHHHTTCBCSS-----C
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----------CCEEEEEECCHHHHHHHHHHhcCCccCC-----c
Confidence 37999999999999999999999999999999987 2499999999999999999999999976 4
Q ss_pred ceEEEeecCCCCCCCCCC
Q 030465 156 FLRLQFSRNPGPRSVFGA 173 (177)
Q Consensus 156 ~l~V~~a~~~~~r~~~g~ 173 (177)
.|+|+|++.+..+..+.+
T Consensus 71 ~l~v~~a~~~~~~~~~~~ 88 (90)
T 2dnq_A 71 NINVEASKNKSKASSGPS 88 (90)
T ss_dssp BCEEECSSCCCCCCSSCC
T ss_pred EEEEEECCCCCCCCCCCC
Confidence 899999988766654433
No 58
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=9.3e-21 Score=130.49 Aligned_cols=83 Identities=18% Similarity=0.285 Sum_probs=71.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+.++|||+|||+++|+++|+++|++||.| +++.+ .+++++|||||+|.+.++|++|++.||+..|.+ +
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~----~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 81 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN----QNGKSKGYAFIEFASFEDAKEALNSCNKREIEG-----R 81 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC----SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC----CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCC-----e
Confidence 37999999999999999999999999976 45544 357889999999999999999999999999976 5
Q ss_pred ceEEEeecCCCCCCC
Q 030465 156 FLRLQFSRNPGPRSV 170 (177)
Q Consensus 156 ~l~V~~a~~~~~r~~ 170 (177)
.|+|+|++.+..+..
T Consensus 82 ~l~v~~a~~~~~~~~ 96 (101)
T 2fc9_A 82 AIRLELQGPRGSPNS 96 (101)
T ss_dssp EEEEEECSSCCCCCC
T ss_pred EEEEEEcCCCCCCCC
Confidence 899999987654443
No 59
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.85 E-value=3.2e-21 Score=131.24 Aligned_cols=80 Identities=21% Similarity=0.326 Sum_probs=74.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+.++|||+|||+++++++|+++|++||.|.+|+|+.++ .++++|||||+|.+.++|++|++.||+..|.+ +
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 85 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR----EGKPKSFGFVCFKHPESVSYAIALLNGIRLYG-----R 85 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT----TSCEEEEEEEEESSTHHHHHHHHHHTTCEETT-----E
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC----CCCCceEEEEEECCHHHHHHHHHHhCCCEECC-----C
Confidence 37899999999999999999999999999999999886 38899999999999999999999999999976 5
Q ss_pred ceEEEeecC
Q 030465 156 FLRLQFSRN 164 (177)
Q Consensus 156 ~l~V~~a~~ 164 (177)
.|+|+|+++
T Consensus 86 ~l~V~~a~~ 94 (95)
T 2ywk_A 86 PINVSGPSS 94 (95)
T ss_dssp ECEEECCCC
T ss_pred EEEEEEcCC
Confidence 899999864
No 60
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.8e-20 Score=129.51 Aligned_cols=85 Identities=20% Similarity=0.284 Sum_probs=75.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.++ .+++++|||||+|.+.++|++|++ ++..|.+ +
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g-----~ 83 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDL---KTGHSKGFGFVRFTEYETQVKVMS--QRHMIDG-----R 83 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECS---SSCSEEEEEEEEESSHHHHHHHHH--SCEEETT-----E
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecC---CCCCccceEEEEECCHHHHHHHHH--cCCeeCC-----e
Confidence 36899999999999999999999999999999999987 578999999999999999999998 5677855 5
Q ss_pred ceEEEeecCCCCCCC
Q 030465 156 FLRLQFSRNPGPRSV 170 (177)
Q Consensus 156 ~l~V~~a~~~~~r~~ 170 (177)
.|+|+|++.+.....
T Consensus 84 ~l~v~~a~~~~~~~~ 98 (103)
T 2cqg_A 84 WCDCKLPNSKQSQDS 98 (103)
T ss_dssp EEEEECCCTTCCCCC
T ss_pred EEEEEecCCCCcCCC
Confidence 899999987655443
No 61
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.4e-20 Score=129.37 Aligned_cols=80 Identities=18% Similarity=0.262 Sum_probs=70.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhC--CCeeCCCCCC
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ--GYRMDEDDPD 153 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~--g~~l~~~~~~ 153 (177)
++++|||+|||+++|+++|+++|++||.|.+|+++.+ ||||||+|++.++|++|++.|+ +..|.+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~---------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G---- 80 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG---------KNQAFLELATEEAAITMVNYYSAVTPHLRN---- 80 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT---------TTEEEEEESSHHHHHHHHHHHHHSCCEETT----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC---------CCEEEEEECCHHHHHHHHHHhccCCceECC----
Confidence 3799999999999999999999999999999988765 3699999999999999999874 677855
Q ss_pred CcceEEEeecCCCCCC
Q 030465 154 SKFLRLQFSRNPGPRS 169 (177)
Q Consensus 154 ~r~l~V~~a~~~~~r~ 169 (177)
++|+|+|++.+....
T Consensus 81 -r~l~V~~a~~~~~~~ 95 (101)
T 2cq1_A 81 -QPIYIQYSNHKELKT 95 (101)
T ss_dssp -EECEEEECSCSSCCC
T ss_pred -cEEEEEEcCcccCcC
Confidence 689999998765443
No 62
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=6.9e-21 Score=131.70 Aligned_cols=85 Identities=21% Similarity=0.288 Sum_probs=76.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCC-CCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCe-eCCCCCC
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRP-FVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYR-MDEDDPD 153 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~-~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~-l~~~~~~ 153 (177)
+.++|||+|||+++|+++|+++|++ ||.|.+|+|+.++ +++++|||||+|.+.++|++|++.||+.. |.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~----~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g---- 79 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ----TGVSKGYGFVKFTDELEQKRALTECQGAVGLGS---- 79 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT----TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSS----
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC----CCCccceEEEEECCHHHHHHHHHHccCCcccCC----
Confidence 3789999999999999999999999 9999999999885 67899999999999999999999999999 866
Q ss_pred CcceEEEeecCCCCCC
Q 030465 154 SKFLRLQFSRNPGPRS 169 (177)
Q Consensus 154 ~r~l~V~~a~~~~~r~ 169 (177)
+.|+|+|++.+..+.
T Consensus 80 -~~l~v~~a~~~~~~~ 94 (104)
T 2dhg_A 80 -KPVRLSVAIPKASRV 94 (104)
T ss_dssp -SCCCCCBCCCCCSCC
T ss_pred -EeEEEEEccCCCcCC
Confidence 479999997765443
No 63
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.8e-20 Score=132.18 Aligned_cols=80 Identities=19% Similarity=0.271 Sum_probs=73.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|+++|++||.|.+|+|+.++ .+++++|||||+|.+.++|++|++.|++ .|.+ +.
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g-----~~ 87 (116)
T 2cqd_A 17 FTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDR---QTGKSRGYGFVTMADRAAAERACKDPNP-IIDG-----RK 87 (116)
T ss_dssp SSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCS---SSCCCCSEEEEEESSHHHHHHHHTCSSC-EETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcC---CCCccceEEEEEECCHHHHHHHHHhCCC-cCCC-----EE
Confidence 7999999999999999999999999999999999886 5788999999999999999999999998 7865 58
Q ss_pred eEEEeecCC
Q 030465 157 LRLQFSRNP 165 (177)
Q Consensus 157 l~V~~a~~~ 165 (177)
|+|+|++..
T Consensus 88 l~V~~a~~~ 96 (116)
T 2cqd_A 88 ANVNLAYLG 96 (116)
T ss_dssp CEEEESTTT
T ss_pred EEEEEcccC
Confidence 999999653
No 64
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.1e-21 Score=138.15 Aligned_cols=84 Identities=19% Similarity=0.282 Sum_probs=76.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
..++|||+|||+++|+++|+++|++||.|.+|+|+.++ .+++++|||||+|.+.++|++|+ .||++.|.+ +
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g-----~ 94 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDR---NSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLG-----V 94 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSC---CSSSCCCCEEEEESCGGGHHHHH-HHTTEEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecC---CCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCC-----e
Confidence 36899999999999999999999999999999999887 56889999999999999999999 999999966 5
Q ss_pred ceEEEeecCCCCC
Q 030465 156 FLRLQFSRNPGPR 168 (177)
Q Consensus 156 ~l~V~~a~~~~~r 168 (177)
.|+|+|++.+..+
T Consensus 95 ~l~V~~a~~~~~~ 107 (114)
T 2cq4_A 95 PIIVQASQAEKNR 107 (114)
T ss_dssp EEEEEEHHHHHHH
T ss_pred EEEEEecCCCccC
Confidence 8999999765443
No 65
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=7.3e-20 Score=128.60 Aligned_cols=85 Identities=18% Similarity=0.334 Sum_probs=76.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCC---C
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP---D 153 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~---~ 153 (177)
.++|||+|||+++|+++|+++|++||.|.+|+|+.++ +++++|||||+|.+.++|++|++.||+..|.+... .
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~----~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 25 PTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS----SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp TTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS----SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC----CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 6899999999999999999999999999999999885 57899999999999999999999999999965421 2
Q ss_pred CcceEEEeecCC
Q 030465 154 SKFLRLQFSRNP 165 (177)
Q Consensus 154 ~r~l~V~~a~~~ 165 (177)
+++|+|.|++++
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 468999999743
No 66
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=5.4e-21 Score=130.92 Aligned_cols=81 Identities=17% Similarity=0.240 Sum_probs=74.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|+++|++||.|..++++.++ .+++++|||||+|.+.++|++|++.||+..|.+ +.
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~---~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g-----~~ 86 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYN---EKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS-----RK 86 (98)
T ss_dssp SEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEEC---SSSCEEEEEEEEESCHHHHHHHHHHTTTCEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEEC---CCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCC-----eE
Confidence 6899999999999999999999999999888777776 578899999999999999999999999999966 58
Q ss_pred eEEEeecCC
Q 030465 157 LRLQFSRNP 165 (177)
Q Consensus 157 l~V~~a~~~ 165 (177)
|+|+|++.+
T Consensus 87 l~V~~a~~~ 95 (98)
T 2cqp_A 87 VKLVLGSGP 95 (98)
T ss_dssp CEEEESSCS
T ss_pred EEEEEcCCC
Confidence 999999754
No 67
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.9e-21 Score=129.82 Aligned_cols=80 Identities=21% Similarity=0.404 Sum_probs=72.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
++++|||+|||+++|+++|+++|++||.|.+|+++.++ .+++++|||||+|.+.++|++|++.||+..|.+ +
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 75 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDK---TTNKCKGYGFVDFDSPSAAQKAVTALKASGVQA-----Q 75 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCS---SSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCE-----E
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC---CCCCcCcEEEEEECCHHHHHHHHHHhcCCeEee-----E
Confidence 47999999999999999999999999999999999886 578899999999999999999999999999966 4
Q ss_pred ceEEEeec
Q 030465 156 FLRLQFSR 163 (177)
Q Consensus 156 ~l~V~~a~ 163 (177)
.|+|++++
T Consensus 76 ~~~~~~~~ 83 (85)
T 1x4e_A 76 MAKQSGPS 83 (85)
T ss_dssp SCCSSCCC
T ss_pred EEeecCCC
Confidence 67776653
No 68
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2e-20 Score=129.81 Aligned_cols=80 Identities=20% Similarity=0.331 Sum_probs=71.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|+++|++|| +.+|+|+.++ +++++|||||+|.+.++|++||+ +|+..|.+ |.
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~----~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~g-----r~ 83 (102)
T 1wez_A 15 GHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP----DGRVTGEADVEFATHEDAVAAMA-KDKANMQH-----RY 83 (102)
T ss_dssp SCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS----SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSS-----SC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC----CCCEeeEEEEEECCHHHHHHHHH-hCCCeECC-----cE
Confidence 68999999999999999999999999 4589999885 68899999999999999999994 79999866 57
Q ss_pred eEEEeecCCCC
Q 030465 157 LRLQFSRNPGP 167 (177)
Q Consensus 157 l~V~~a~~~~~ 167 (177)
|+|.++..+..
T Consensus 84 i~V~~~~~~~~ 94 (102)
T 1wez_A 84 VELFLNSTAGT 94 (102)
T ss_dssp CEEEEECCCCC
T ss_pred EEEEECCCCCC
Confidence 99999966543
No 69
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=3.2e-20 Score=126.99 Aligned_cols=80 Identities=19% Similarity=0.395 Sum_probs=70.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
+++|||+|||+++|+++|+++|++||.|.+|++..+ +|||||+|.+.++|++|++.||+..|.+ .++.
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---------~g~afV~f~~~~~A~~A~~~l~g~~~~~---~g~~ 84 (97)
T 1why_A 17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---------DSFAYIQYESLDAAQAACAKMRGFPLGG---PDRR 84 (97)
T ss_dssp CSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---------SCCEEEEESSHHHHHHHHHHHTTCBCSS---SSCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---------CCEEEEEECCHHHHHHHHHHHCCCEeCC---CCcE
Confidence 689999999999999999999999999999988754 3699999999999999999999999972 1358
Q ss_pred eEEEeecCCCCC
Q 030465 157 LRLQFSRNPGPR 168 (177)
Q Consensus 157 l~V~~a~~~~~r 168 (177)
|+|+|++.+..+
T Consensus 85 l~V~~a~~~~~~ 96 (97)
T 1why_A 85 LRVDFAKSGPSS 96 (97)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEECCCCCCC
Confidence 999999876543
No 70
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.84 E-value=1.5e-20 Score=130.67 Aligned_cols=79 Identities=22% Similarity=0.312 Sum_probs=73.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.++ +++++|||||+|.+.++|++|++.||+..|.+ +
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~----~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 98 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR----SGRSLGTADVHFERKADALKAMKQYNGVPLDG-----R 98 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT----TSCEEEEEEEEESSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC----CCCcceEEEEEECCHHHHHHHHHHhCCCEeCC-----c
Confidence 37999999999999999999999999999999999885 68899999999999999999999999999966 5
Q ss_pred ceEEEeec
Q 030465 156 FLRLQFSR 163 (177)
Q Consensus 156 ~l~V~~a~ 163 (177)
.|+|+|+.
T Consensus 99 ~l~V~~a~ 106 (107)
T 3ulh_A 99 PMNIQLVT 106 (107)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEeC
Confidence 89999985
No 71
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.84 E-value=5.6e-21 Score=137.95 Aligned_cols=84 Identities=20% Similarity=0.308 Sum_probs=75.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEE--EEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCC----eeCC
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKE--VRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY----RMDE 149 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~--v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~----~l~~ 149 (177)
++++|||+|||+++|+++|+++|++||.|.. |+|+.++ .+++++|||||+|.+. +|++|++.||+. .|.+
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~---~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDK---QTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCS---SSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcC---CCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3789999999999999999999999999976 9999887 6789999999999999 999999999999 8866
Q ss_pred CCCCCcceEEEeecCCCCC
Q 030465 150 DDPDSKFLRLQFSRNPGPR 168 (177)
Q Consensus 150 ~~~~~r~l~V~~a~~~~~r 168 (177)
|.|+|+|++...++
T Consensus 98 -----r~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 98 -----KTINVEFAKGSKRD 111 (131)
T ss_dssp -----CCCCCEECCCSCCC
T ss_pred -----EEEEEEECCCCCCC
Confidence 58999999775443
No 72
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.84 E-value=9.5e-21 Score=141.81 Aligned_cols=87 Identities=21% Similarity=0.341 Sum_probs=76.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
++++|||+|||+++|+++|+++|++||.|..|+|+.++ .+++++|||||+|.+.++|++||+.||+..|.+ +
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~---~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-----~ 142 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDR---RTGFSKGYALVEYETHKQALAAKEALNGAEIMG-----Q 142 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT---TTSSEEEEEEEEESSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecC---CCCcEeeEEEEEECCHHHHHHHHHHhCCCEECC-----E
Confidence 37899999999999999999999999999999999886 678899999999999999999999999999966 5
Q ss_pred ceEEEeecCCCCCCC
Q 030465 156 FLRLQFSRNPGPRSV 170 (177)
Q Consensus 156 ~l~V~~a~~~~~r~~ 170 (177)
.|+|+|++.+.++..
T Consensus 143 ~l~V~~a~~~~~~~~ 157 (165)
T 1rk8_A 143 TIQVDWCFVKGPKRV 157 (165)
T ss_dssp ECEEEESEECC----
T ss_pred EEEEEEecCCCCCCC
Confidence 899999987655543
No 73
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.84 E-value=2.3e-20 Score=130.62 Aligned_cols=83 Identities=18% Similarity=0.279 Sum_probs=71.9
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCC
Q 030465 76 ASSTLYVEGLPAD-STKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 154 (177)
Q Consensus 76 ~~~tLfV~nLp~~-~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~ 154 (177)
..++|||+|||++ +|+++|+++|++||.|.+|++ . ++||||+|.+.++|++|++.||+..|.+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~---------~g~afV~f~~~~~A~~A~~~l~g~~~~g----- 89 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--H---------KGYAFVQYSNERHARAAVLGENGRVLAG----- 89 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--E---------TTEEEEECSSSHHHHHHHHHHTTCEETT-----
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--e---------CCEEEEEECCHHHHHHHHHHcCCCEECC-----
Confidence 3689999999999 999999999999999999988 1 3599999999999999999999999976
Q ss_pred cceEEEeecCCCCCCCCCCC
Q 030465 155 KFLRLQFSRNPGPRSVFGAR 174 (177)
Q Consensus 155 r~l~V~~a~~~~~r~~~g~~ 174 (177)
+.|+|+|++.+.++..+..+
T Consensus 90 ~~l~V~~a~~~~~~~~~~~~ 109 (110)
T 1wf1_A 90 QTLDINMAGEPKPDRSGPSS 109 (110)
T ss_dssp EECCEEESCCCCSCCCCCCC
T ss_pred eEEEEEECCCCCCCCCCCCC
Confidence 58999999866554444434
No 74
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.7e-20 Score=125.83 Aligned_cols=80 Identities=21% Similarity=0.332 Sum_probs=73.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
..++|||+|||+++|+++|+++|++| .|.+|+|+.+. +++++|||||+|.+.++|++|++ ||+..|.+ +
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~----~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~g-----r 77 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNA----HGNKTGYIFVDFSNEEEVKQALK-CNREYMGG-----R 77 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECT----TSCEEEEEEEECSSHHHHHHHHH-SCSEEETT-----E
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECC----CCCCceEEEEEECCHHHHHHHHH-hCCceeCC-----c
Confidence 37899999999999999999999999 99999999874 68899999999999999999999 99999966 5
Q ss_pred ceEEEeecCCC
Q 030465 156 FLRLQFSRNPG 166 (177)
Q Consensus 156 ~l~V~~a~~~~ 166 (177)
.|+|.+++.++
T Consensus 78 ~i~v~~a~~~~ 88 (91)
T 2dgw_A 78 YIEVFREKSGP 88 (91)
T ss_dssp EEEEEEESSCC
T ss_pred EEEEEECCcCC
Confidence 89999997653
No 75
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=3.4e-20 Score=127.33 Aligned_cols=80 Identities=25% Similarity=0.342 Sum_probs=72.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|+++|++||.|.+|++..+ +|||||+|.+.++|++|++.||+..|.+ ++
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~---------kg~afV~f~~~~~a~~a~~~l~g~~~~g-----~~ 80 (99)
T 2cpj_A 15 RSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD---------KGFGFIRLETRTLAEIAKVELDNMPLRG-----KQ 80 (99)
T ss_dssp TTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT---------TTEEEEECSSSHHHHHHHHHHTTCCBTT-----BC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC---------CCEEEEEECCHHHHHHHHHHhCCCEeCC-----ce
Confidence 789999999999999999999999999999998754 3699999999999999999999999976 57
Q ss_pred eEEEeecCCCCCCC
Q 030465 157 LRLQFSRNPGPRSV 170 (177)
Q Consensus 157 l~V~~a~~~~~r~~ 170 (177)
|+|+|++.+.....
T Consensus 81 l~v~~a~~~~~~~~ 94 (99)
T 2cpj_A 81 LRVRFACHSASLTS 94 (99)
T ss_dssp CEEEESSCCSCCCC
T ss_pred EEEEEcCCCCCCCC
Confidence 99999987655443
No 76
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.84 E-value=3.2e-21 Score=133.10 Aligned_cols=81 Identities=20% Similarity=0.266 Sum_probs=75.2
Q ss_pred CCeEEEcCCCC------CCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCC
Q 030465 77 SSTLYVEGLPA------DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 150 (177)
Q Consensus 77 ~~tLfV~nLp~------~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~ 150 (177)
+++|||+|||+ ++++++|+++|++||.|.+|+|+.++ .+++++|||||+|.+.++|++|++.|||..|.+.
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~---~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDE---ATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEET---TTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcC---CCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 68999999999 99999999999999999999999987 6789999999999999999999999999999762
Q ss_pred CCCCcceEEEeecC
Q 030465 151 DPDSKFLRLQFSRN 164 (177)
Q Consensus 151 ~~~~r~l~V~~a~~ 164 (177)
+.|+|+++++
T Consensus 83 ----r~l~V~~a~~ 92 (100)
T 3ns6_A 83 ----HRLFLYTMKD 92 (100)
T ss_dssp ----CBCEEEESHH
T ss_pred ----eEEEEEECch
Confidence 4799999864
No 77
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=6.3e-21 Score=133.16 Aligned_cols=80 Identities=19% Similarity=0.272 Sum_probs=70.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCC--CeeCCCCCC
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQG--YRMDEDDPD 153 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g--~~l~~~~~~ 153 (177)
+.++|||+|||+++||++|+++|++||.|.+|+|+.++ |||||+|++.++|++|++.|++ ..|.+
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~k---------GfaFVeF~~~~~A~~Ai~~l~~~~~~l~G---- 81 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK---------NQAFIEMNTEEAANTMVNYYTSVTPVLRG---- 81 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTT---------TEEEEEESSHHHHHHHHHHHTTSCCEETT----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCC---------CEEEEEECCHHHHHHHHHHhccCCceECC----
Confidence 37999999999999999999999999999999998753 6999999999999999998874 67855
Q ss_pred CcceEEEeecCCCCCC
Q 030465 154 SKFLRLQFSRNPGPRS 169 (177)
Q Consensus 154 ~r~l~V~~a~~~~~r~ 169 (177)
|+|+|+||+.+....
T Consensus 82 -r~l~V~~A~~~~~~~ 96 (105)
T 1sjq_A 82 -QPIYIQFSNHKELKT 96 (105)
T ss_dssp -EECCBCCCSSSSCCC
T ss_pred -EEEEEEEcCCCCCCc
Confidence 689999998764443
No 78
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=4.1e-20 Score=129.09 Aligned_cols=82 Identities=13% Similarity=0.229 Sum_probs=71.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
..++|||+|||+++|+++|+++|++||.|..|+|+.+ |||||+|.+.++|++||+.||+..|.++....+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~----------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT----------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC----------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 3789999999999999999999999999999999765 499999999999999999999999977322225
Q ss_pred ceEEEeecCCCC
Q 030465 156 FLRLQFSRNPGP 167 (177)
Q Consensus 156 ~l~V~~a~~~~~ 167 (177)
.|+|++++.+.+
T Consensus 84 ~i~V~~a~~~~~ 95 (108)
T 1x4c_A 84 YIRVKVDGPRSP 95 (108)
T ss_dssp EEEEEESSCCSC
T ss_pred EEEEEeCCCCCC
Confidence 899999987643
No 79
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.5e-20 Score=126.35 Aligned_cols=82 Identities=22% Similarity=0.233 Sum_probs=72.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+.++|||+|||+++|+++|+++|++||.|.+|+++. +||||+|.+.++|++|++.||+..|.+ +
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~-----------~~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 72 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK-----------DYAFVHMERAEDAVEAIRGLDNTEFQG-----K 72 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS-----------SEEEEEESCHHHHHHHHHHHTTEEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC-----------CEEEEEECCHHHHHHHHHHhCCCeeCC-----c
Confidence 378999999999999999999999999999999863 299999999999999999999999976 5
Q ss_pred ceEEEeecCCCCCCCCCC
Q 030465 156 FLRLQFSRNPGPRSVFGA 173 (177)
Q Consensus 156 ~l~V~~a~~~~~r~~~g~ 173 (177)
.|+|+|++.+..+..+.+
T Consensus 73 ~l~V~~a~~~~~~~~~~~ 90 (92)
T 2dgt_A 73 RMHVQLSTSRLRTASGPS 90 (92)
T ss_dssp EEEEEESSCCCSCCCCCC
T ss_pred EEEEEEccCCCCCCCCCC
Confidence 899999987755554433
No 80
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.3e-20 Score=129.01 Aligned_cols=81 Identities=17% Similarity=0.224 Sum_probs=73.0
Q ss_pred CCeEEEcCCCCCCCHHHHH----HhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCC
Q 030465 77 SSTLYVEGLPADSTKREVA----HIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 152 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~----~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~ 152 (177)
.++|||+|||+++++++|+ ++|++||.|.+|+|+.++ .+ ++||||+|.+.++|++|++.||+..|.+
T Consensus 9 ~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~---~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~g--- 79 (96)
T 2dgx_A 9 GADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHT---DY---QLKAVVQMENLQDAIGAVNSLHRYKIGS--- 79 (96)
T ss_dssp CEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCC---ST---TCCEEEEESSHHHHHHHHHHHTTEEETT---
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCC---CC---CeEEEEEECCHHHHHHHHHHhCCCEECC---
Confidence 6899999999999999999 999999999999999876 22 6899999999999999999999999966
Q ss_pred CCcceEEEeecCCCCC
Q 030465 153 DSKFLRLQFSRNPGPR 168 (177)
Q Consensus 153 ~~r~l~V~~a~~~~~r 168 (177)
+.|+|+|++.....
T Consensus 80 --r~l~V~~a~~~~~~ 93 (96)
T 2dgx_A 80 --KKILVSLATGASGP 93 (96)
T ss_dssp --EEEEEEECCCSSCC
T ss_pred --eEEEEEEcCCCCCC
Confidence 58999999765433
No 81
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.84 E-value=1.1e-20 Score=130.72 Aligned_cols=76 Identities=17% Similarity=0.205 Sum_probs=68.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCe--eCCCCCC
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYR--MDEDDPD 153 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~--l~~~~~~ 153 (177)
++++|||+|||+++|+++|+++|++||.|.+|+++.. ||||||+|++.++|.+|++.|++.. +.+
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~---------kg~AFVef~~~~~A~~Av~~ln~~~~~i~G---- 86 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK---------KRQALVEFEDVLGACNAVNYAADNQIYIAG---- 86 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT---------TTEEEEEESSHHHHHHHHHHHHHSCEEETT----
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC---------CCEEEEEECCHHHHHHHHHHhcCCCceeCC----
Confidence 3899999999999999999999999999999998754 3699999999999999999999886 544
Q ss_pred CcceEEEeecCC
Q 030465 154 SKFLRLQFSRNP 165 (177)
Q Consensus 154 ~r~l~V~~a~~~ 165 (177)
|+|+|+||+++
T Consensus 87 -r~i~V~~S~~k 97 (100)
T 3r27_A 87 -HPAFVNYSTSQ 97 (100)
T ss_dssp -EEEEEEECSCS
T ss_pred -cEEEEEecccc
Confidence 68999999765
No 82
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.83 E-value=2.6e-20 Score=137.93 Aligned_cols=85 Identities=21% Similarity=0.330 Sum_probs=78.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|+++|++||.|.+|+|+.++ .+++++|||||+|.+.++|++|++.||+..|.+ ++
T Consensus 70 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~---~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~~ 141 (158)
T 2kn4_A 70 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDR---YTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG-----RE 141 (158)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCS---SCTTSCCEEEEEESBHHHHHHHHHHSTTEESSS-----SE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC---CCCccceEEEEEECCHHHHHHHHHHhCCCEECC-----eE
Confidence 6899999999999999999999999999999999886 578899999999999999999999999999966 58
Q ss_pred eEEEeecCCCCCC
Q 030465 157 LRLQFSRNPGPRS 169 (177)
Q Consensus 157 l~V~~a~~~~~r~ 169 (177)
|+|+|++.+.++.
T Consensus 142 l~v~~a~~~~~~~ 154 (158)
T 2kn4_A 142 LRVQMARYGRPPD 154 (158)
T ss_dssp EEEEEECCSSCCC
T ss_pred EEEEECCCCCCCC
Confidence 9999998765544
No 83
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=4.8e-20 Score=128.49 Aligned_cols=77 Identities=16% Similarity=0.144 Sum_probs=68.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCe--eCCCCCCC
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYR--MDEDDPDS 154 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~--l~~~~~~~ 154 (177)
+++|||+|||+++|+++|+++|++||.|.+|+|+.+ ||||||+|++.++|++|++.|++.. |.+
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~---------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G----- 80 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF---------KRQALVEFENIDSAKECVTFAADVPVYIAG----- 80 (104)
T ss_dssp CSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT---------TTEEEEEESSHHHHHHHHHHHHHSCCBSSS-----
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC---------CCEEEEEECCHHHHHHHHHHhccCCceECC-----
Confidence 799999999999999999999999999999998764 3699999999999999999997654 644
Q ss_pred cceEEEeecCCCC
Q 030465 155 KFLRLQFSRNPGP 167 (177)
Q Consensus 155 r~l~V~~a~~~~~ 167 (177)
++|+|+|++.+..
T Consensus 81 r~l~V~~a~~~~~ 93 (104)
T 1wex_A 81 QQAFFNYSTSKRI 93 (104)
T ss_dssp SBCEEEECSSSSC
T ss_pred EEEEEEEccCccc
Confidence 5899999987643
No 84
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.83 E-value=1.8e-20 Score=133.67 Aligned_cols=83 Identities=14% Similarity=0.292 Sum_probs=75.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|+++|++||.|.+|+|+.++ .+++++|||||+|.+.++|++|+ .||+..|.+ +.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g-----~~ 106 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDK---FSGHPKGYAYIEFAERNSVDAAV-AMDETVFRG-----RT 106 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEEC---TTSSCEEEEEEEESSHHHHHHHH-TTTTCEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC---CCCCcccEEEEEECCHHHHHHHH-hcCCCeECC-----eE
Confidence 6899999999999999999999999999999999886 57889999999999999999999 899999966 58
Q ss_pred eEEEeecCCCCC
Q 030465 157 LRLQFSRNPGPR 168 (177)
Q Consensus 157 l~V~~a~~~~~r 168 (177)
|+|+|++.+.+.
T Consensus 107 l~V~~a~~~~~~ 118 (124)
T 2jwn_A 107 IKVLPKRTNMPG 118 (124)
T ss_dssp CEEEESSCCCSS
T ss_pred EEEEECCCCCCC
Confidence 999999765443
No 85
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.83 E-value=1.7e-20 Score=126.04 Aligned_cols=80 Identities=18% Similarity=0.316 Sum_probs=74.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|+++|++||.|.+++++.++ .+++++|||||+|.+.++|++|+ .||+..+.+ +.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g-----~~ 76 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDK---FSGHPKGFAYIEFSDKESVRTSL-ALDESLFRG-----RQ 76 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESC---SSSSCCEEEEEEESSTHHHHHHG-GGTTCEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecC---CCCCcceEEEEEECCHHHHHHHH-hcCCCEECC-----cE
Confidence 5899999999999999999999999999999999886 57889999999999999999999 999999966 58
Q ss_pred eEEEeecCC
Q 030465 157 LRLQFSRNP 165 (177)
Q Consensus 157 l~V~~a~~~ 165 (177)
|+|++++++
T Consensus 77 l~V~~a~~~ 85 (89)
T 3ucg_A 77 IKVIPKRTN 85 (89)
T ss_dssp CEEEETTTT
T ss_pred EEEEEccCC
Confidence 999999764
No 86
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.83 E-value=1.6e-20 Score=131.65 Aligned_cols=86 Identities=16% Similarity=0.215 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCC
Q 030465 74 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 153 (177)
Q Consensus 74 ~~~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~ 153 (177)
..+.++|||+|||+++|+++|+++|++||.|.+|+|+.++ .+++++|||||+|.+.++|++|++.++ ..|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~---~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~g---- 93 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDP---LTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDS---- 93 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCT---TTCCCTTCEEEEESSHHHHHHHHHSSC-EEETT----
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECC---CCCCcCcEEEEEECCHHHHHHHHHHCC-CcCCC----
Confidence 3447899999999999999999999999999999999886 578899999999999999999998764 88865
Q ss_pred CcceEEEeecCCCCC
Q 030465 154 SKFLRLQFSRNPGPR 168 (177)
Q Consensus 154 ~r~l~V~~a~~~~~r 168 (177)
+.|+|+++..+..+
T Consensus 94 -~~l~V~~a~~~~~~ 107 (109)
T 2rs2_A 94 -KTIDPKVAFPRRAQ 107 (109)
T ss_dssp -EEEEEEECCCCCCC
T ss_pred -EEEEEEEccCCCCC
Confidence 58999999766443
No 87
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.9e-21 Score=131.96 Aligned_cols=83 Identities=20% Similarity=0.377 Sum_probs=76.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|+++|++||.|.+|+++.++ .+++++|||||+|.+.++|++|++.||+..|.+ +.
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~---~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~~ 79 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDR---ETGKPKGYGFCEYQDQETALSAMRNLNGREFSG-----RA 79 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEET---TTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSS-----SC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCC---CCCccceEEEEEECCHHHHHHHHHHhCCCeeCC-----cE
Confidence 6899999999999999999999999999999999886 578899999999999999999999999999966 47
Q ss_pred eEEEeecCCCC
Q 030465 157 LRLQFSRNPGP 167 (177)
Q Consensus 157 l~V~~a~~~~~ 167 (177)
|+|+|++.+..
T Consensus 80 l~v~~a~~~~~ 90 (104)
T 1p1t_A 80 LRVDNAASEKN 90 (104)
T ss_dssp BEEEETTCTTH
T ss_pred EEEEeCCCccc
Confidence 99999977543
No 88
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.5e-20 Score=131.66 Aligned_cols=80 Identities=21% Similarity=0.308 Sum_probs=73.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+.++|||+|||+++|+++|+++|++||.|.+|+++.++ +.++|||||+|.+.++|++|++.||+..|.+ +
T Consensus 28 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-----~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g-----~ 97 (109)
T 2err_A 28 QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE-----RGSKGFGFVTFENSADADRAREKLHGTVVEG-----R 97 (109)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT-----TBCTTEEEEECCCSHHHHHHHHHHTTCEETT-----E
T ss_pred CCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC-----CCCceEEEEEECCHHHHHHHHHHcCCCEECC-----E
Confidence 47899999999999999999999999999999998875 3478999999999999999999999999966 5
Q ss_pred ceEEEeecCC
Q 030465 156 FLRLQFSRNP 165 (177)
Q Consensus 156 ~l~V~~a~~~ 165 (177)
.|+|+|++.+
T Consensus 98 ~l~V~~a~~~ 107 (109)
T 2err_A 98 KIEVNNATAR 107 (109)
T ss_dssp ECEEEECCCS
T ss_pred EEEEEECCCC
Confidence 8999999764
No 89
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.83 E-value=7.9e-21 Score=130.99 Aligned_cols=83 Identities=20% Similarity=0.315 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCC
Q 030465 74 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 153 (177)
Q Consensus 74 ~~~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~ 153 (177)
....++|||+|||+++|+++|+++|++|| |.+|+|+.++. .+++++|||||+|.+.++|++|+ .||+..|.+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~--~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g---- 87 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPS--NPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN---- 87 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTT--TTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTT----
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCC--cCCccCeEEEEEECCHHHHHHHH-hcCCCEECC----
Confidence 34479999999999999999999999999 99999987641 25889999999999999999999 999999966
Q ss_pred CcceEEEeecCC
Q 030465 154 SKFLRLQFSRNP 165 (177)
Q Consensus 154 ~r~l~V~~a~~~ 165 (177)
+.|+|++++..
T Consensus 88 -~~l~V~~a~~~ 98 (100)
T 2j76_E 88 -RRIRVDVADQA 98 (100)
T ss_dssp -BCCCCEECCCS
T ss_pred -eEEEEEeccCC
Confidence 57999999764
No 90
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=7.8e-20 Score=126.91 Aligned_cols=83 Identities=20% Similarity=0.306 Sum_probs=72.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEE-EEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCC
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKE-VRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 154 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~-v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~ 154 (177)
..++|||+|||+++|+++|+++|++||.|.+ |+|+.+. +++++|||||+|.+.++|++|++. |+..|.+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~----~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~g----- 83 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDF----QGRSTGEAFVQFASQEIAEKALKK-HKERIGH----- 83 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCS----SSCBCSEEEEEESSHHHHHHHHTT-TTCCSSS-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECC----CCCcceEEEEEECCHHHHHHHHHh-CcchhCC-----
Confidence 3689999999999999999999999999987 7777763 688999999999999999999987 9998865
Q ss_pred cceEEEeecCCCCC
Q 030465 155 KFLRLQFSRNPGPR 168 (177)
Q Consensus 155 r~l~V~~a~~~~~r 168 (177)
|.|+|.++.....+
T Consensus 84 r~i~v~~~~~~~~~ 97 (104)
T 1wg5_A 84 RYIEIFKSSRAEVR 97 (104)
T ss_dssp SCCEEEEECTTTSC
T ss_pred cEEEEEECCHHHHH
Confidence 57999999665433
No 91
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.3e-20 Score=131.22 Aligned_cols=79 Identities=19% Similarity=0.274 Sum_probs=70.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCC--CeeCCCCCCC
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQG--YRMDEDDPDS 154 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g--~~l~~~~~~~ 154 (177)
+++|||+|||+++||++|+++|++||.|.+|+|+.++ |||||+|++.++|++|++.|++ ..|.+
T Consensus 31 s~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~k---------G~AFVeF~~~e~A~~Ai~~l~~~~~~l~G----- 96 (119)
T 2ad9_A 31 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK---------NQAFIEMNTEEAANTMVNYYTSVTPVLRG----- 96 (119)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGG---------TEEEEECSCHHHHHHHHHHHHHHCCCBTT-----
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC---------CEEEEEECCHHHHHHHHHHhccCCceECC-----
Confidence 7999999999999999999999999999999998753 6999999999999999999984 57755
Q ss_pred cceEEEeecCCCCCC
Q 030465 155 KFLRLQFSRNPGPRS 169 (177)
Q Consensus 155 r~l~V~~a~~~~~r~ 169 (177)
++|+|+||+.+....
T Consensus 97 r~l~V~~a~~k~~~~ 111 (119)
T 2ad9_A 97 QPIYIQFSNHKELKT 111 (119)
T ss_dssp BCCEEEECSSSSCCC
T ss_pred eEEEEEEccCCCCCc
Confidence 589999998765544
No 92
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.83 E-value=1.9e-20 Score=139.41 Aligned_cols=80 Identities=13% Similarity=0.172 Sum_probs=74.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCC--CEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCC
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFV--GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 154 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G--~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~ 154 (177)
.++|||+|||+++|+++|+++|++|| .|.+|+|+.++ .+|+++|||||+|.+.++|++||+.||+..|.+
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~---~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~G----- 126 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENR---ANGQSKGYAEVVVASENSVHKLLELLPGKVLNG----- 126 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECT---TTCCEEEEEEEEESCHHHHHHHHHHSTTCEETT-----
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecC---CCCccceEEEEEECCHHHHHHHHHHcCCCEECC-----
Confidence 68999999999999999999999999 99999999987 679999999999999999999999999999966
Q ss_pred cceEEEeecC
Q 030465 155 KFLRLQFSRN 164 (177)
Q Consensus 155 r~l~V~~a~~ 164 (177)
+.|+|+++..
T Consensus 127 r~l~V~~a~~ 136 (156)
T 3n9u_C 127 EKVDVRPATR 136 (156)
T ss_dssp EECEEEECCH
T ss_pred eEeEEEEcCC
Confidence 5899999854
No 93
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.83 E-value=8.4e-21 Score=129.13 Aligned_cols=80 Identities=16% Similarity=0.194 Sum_probs=73.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|+++|++||.|..++++.++ .+++++|||||+|.+.++|++|++.||+..|.+ +.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~---~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g-----r~ 86 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYN---EKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS-----RK 86 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEEC---TTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeC---CCCCEeeEEEEEECCHHHHHHHHHHhCCCeECC-----cE
Confidence 5899999999999999999999999999888888776 578899999999999999999999999999966 58
Q ss_pred eEEEeecC
Q 030465 157 LRLQFSRN 164 (177)
Q Consensus 157 l~V~~a~~ 164 (177)
|+|+++.+
T Consensus 87 l~v~~a~s 94 (95)
T 2ek1_A 87 VKLSGPSS 94 (95)
T ss_dssp CEEECCC-
T ss_pred EEEEeccC
Confidence 99999853
No 94
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.83 E-value=4.6e-20 Score=123.59 Aligned_cols=78 Identities=18% Similarity=0.356 Sum_probs=70.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+.++|||+|||+++|+++|+++|++||.|.+|+++.++ .+++++|||||+|.+.++|++|++ +++..|.+ +
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g-----~ 80 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDP---NTGRSRGFGFILFKDAASVEKVLD-QKEHRLDG-----R 80 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECT---TTCCEEEEEEEEESSTHHHHHHHH-SSCEEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecC---CCCccccEEEEEECCHHHHHHHHH-hCCCEECC-----E
Confidence 37899999999999999999999999999999999886 578899999999999999999995 58888865 5
Q ss_pred ceEEEee
Q 030465 156 FLRLQFS 162 (177)
Q Consensus 156 ~l~V~~a 162 (177)
.|+|++|
T Consensus 81 ~i~v~~A 87 (87)
T 3s7r_A 81 VIDPKKA 87 (87)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 8999876
No 95
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=5.6e-20 Score=125.86 Aligned_cols=79 Identities=27% Similarity=0.473 Sum_probs=69.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
..++|||+|||+++|+++|+++|++||.|. ++++.+ +++|||||+|.+.++|++|++.||+..|.+ +
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~-------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 84 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ-------GPRRRAFLHYPDSAAAQQAVSCLQGLRLGT-----D 84 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE-------TTTTEEEEECSSHHHHHHHHHHHTTCCSSS-----S
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC-------CCCcEEEEEECCHHHHHHHHHHhCCCEECC-----c
Confidence 378999999999999999999999999996 666654 356799999999999999999999999976 4
Q ss_pred ceEEEeecCCCC
Q 030465 156 FLRLQFSRNPGP 167 (177)
Q Consensus 156 ~l~V~~a~~~~~ 167 (177)
.|+|+|++.+.+
T Consensus 85 ~l~V~~a~~~~~ 96 (97)
T 2e5j_A 85 TLRVALARQQRD 96 (97)
T ss_dssp CCEEEECCCCCC
T ss_pred EEEEEEcCCCCC
Confidence 799999977543
No 96
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.82 E-value=1e-20 Score=137.55 Aligned_cols=86 Identities=21% Similarity=0.328 Sum_probs=77.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+.++|||+|||+++|+++|+++|++||.|..|+|+.++ .+++++|||||+|.+.++|++|++.||+..|.+ +
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~---~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g-----~ 117 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDR---YTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG-----R 117 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCS---SSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSS-----S
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC---CCCccceEEEEEECCHHHHHHHHHHcCCCEECC-----E
Confidence 37899999999999999999999999999999998876 578899999999999999999999999999976 4
Q ss_pred ceEEEeecCCCCCC
Q 030465 156 FLRLQFSRNPGPRS 169 (177)
Q Consensus 156 ~l~V~~a~~~~~r~ 169 (177)
+|+|+|++.+.++.
T Consensus 118 ~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 118 ELRVQMARYGRPPD 131 (135)
T ss_dssp CCEEEECCCCCCCT
T ss_pred EEEEEECCCCCCCc
Confidence 79999998764443
No 97
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.82 E-value=9e-20 Score=130.15 Aligned_cols=83 Identities=20% Similarity=0.289 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCC
Q 030465 75 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 154 (177)
Q Consensus 75 ~~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~ 154 (177)
.++++|||+|||+++++++|+++|++||.|.+|+|+.++ +++++|||||+|.+.++|++|++.||+..|.+
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~----~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----- 103 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR----SGRSLGTADVHFERRADALKAMKQYKGVPLDG----- 103 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS----SSSCCSEEEEEESSHHHHHHHHHHHTTEESSS-----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC----CCCEeeEEEEEECCHHHHHHHHHHcCCCEECC-----
Confidence 347899999999999999999999999999999998875 57889999999999999999999999999966
Q ss_pred cceEEEeecCCC
Q 030465 155 KFLRLQFSRNPG 166 (177)
Q Consensus 155 r~l~V~~a~~~~ 166 (177)
+.|+|+||..+.
T Consensus 104 ~~l~V~~a~~~~ 115 (124)
T 2kt5_A 104 RPMDIQLVASQI 115 (124)
T ss_dssp CEEEEEEECCTT
T ss_pred cEEEEEEeCCCC
Confidence 489999997653
No 98
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.9e-19 Score=123.51 Aligned_cols=78 Identities=22% Similarity=0.319 Sum_probs=69.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCC--CCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCC
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPF--VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 153 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~--G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~ 153 (177)
+.++|||+|||+++|+++|+++|++| |.|.+|++. ++||||+|.+.++|++|++.||+..|.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g---- 78 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----------RDYAFVHFSNREDAVEAMKALNGKVLDG---- 78 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----------SSEEEEEESSHHHHHHHHHHHSSEEETT----
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----------CCeEEEEeCCHHHHHHHHHHhCCCEeCC----
Confidence 37999999999999999999999999 999988764 2599999999999999999999999976
Q ss_pred CcceEEEeecCCCCCC
Q 030465 154 SKFLRLQFSRNPGPRS 169 (177)
Q Consensus 154 ~r~l~V~~a~~~~~r~ 169 (177)
+.|+|+|++.+..+.
T Consensus 79 -~~l~v~~a~~~~~~~ 93 (99)
T 2cpd_A 79 -SPIEVTLAKPVDKDS 93 (99)
T ss_dssp -EEEEEECCCCCCCCC
T ss_pred -cEEEEEECCCCCCCC
Confidence 589999998765443
No 99
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1e-19 Score=128.41 Aligned_cols=77 Identities=13% Similarity=0.199 Sum_probs=67.5
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCC--CeeCCCCC
Q 030465 76 ASSTLYVEGLPAD-STKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQG--YRMDEDDP 152 (177)
Q Consensus 76 ~~~tLfV~nLp~~-~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g--~~l~~~~~ 152 (177)
++++|||+|||++ +|+++|+++|++||.|.+|+|+.. ||||||+|++.++|++|++.||+ ..|.+
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~---------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~G--- 91 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM---------KSQAFIEMETREDAMAMVDHCLKKALWFQG--- 91 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT---------TTEEEEECSSHHHHHHHHHHHHHSCCCSSS---
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC---------CCEEEEEECCHHHHHHHHHHhccCCceECC---
Confidence 3799999999998 999999999999999999999753 36999999999999999998865 45755
Q ss_pred CCcceEEEeecCCC
Q 030465 153 DSKFLRLQFSRNPG 166 (177)
Q Consensus 153 ~~r~l~V~~a~~~~ 166 (177)
|+|+|+||+.+.
T Consensus 92 --r~l~V~~a~~~~ 103 (112)
T 1x4f_A 92 --RCVKVDLSEKYK 103 (112)
T ss_dssp --SCCEEEEECSCS
T ss_pred --EEEEEEECcccc
Confidence 589999997653
No 100
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3e-20 Score=129.21 Aligned_cols=78 Identities=17% Similarity=0.239 Sum_probs=71.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|+++|++||.|.+|+|+.++ . ++++|||||+|.+.++|++|++ +++..|.+ +.
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~---~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~g-----r~ 80 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL---H-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKE-----TD 80 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCC---T-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTT-----TT
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECC---C-CCCccEEEEEECCHHHHHHHHH-cCCCEECC-----EE
Confidence 6899999999999999999999999999999999886 3 8899999999999999999998 89999966 47
Q ss_pred eEEEeecC
Q 030465 157 LRLQFSRN 164 (177)
Q Consensus 157 l~V~~a~~ 164 (177)
|+|.+++.
T Consensus 81 l~V~~~~~ 88 (103)
T 1s79_A 81 LLILFKDD 88 (103)
T ss_dssp CEEEEHHH
T ss_pred EEEEEchH
Confidence 99998754
No 101
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=6.9e-22 Score=139.66 Aligned_cols=87 Identities=21% Similarity=0.302 Sum_probs=78.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEE--------EEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeC
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKE--------VRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMD 148 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~--------v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~ 148 (177)
.++|||+|||+++|+++|+++|++||.|.. |+|+.++ .+++++|||||+|.+.++|++|++.||+..|.
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~---~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 7 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDR---ETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 789999999999999999999999999998 8888876 56889999999999999999999999999997
Q ss_pred CCCCCCcceEEEeecCCCCCCCC
Q 030465 149 EDDPDSKFLRLQFSRNPGPRSVF 171 (177)
Q Consensus 149 ~~~~~~r~l~V~~a~~~~~r~~~ 171 (177)
+ +.|+|+|++.+..+..+
T Consensus 84 g-----~~l~V~~a~~~~~~~~g 101 (116)
T 2lcw_A 84 G-----NPIKVSFATRRADFNRG 101 (116)
Confidence 6 47999999887655533
No 102
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.82 E-value=1.3e-20 Score=132.82 Aligned_cols=79 Identities=14% Similarity=0.171 Sum_probs=69.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCC-CEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFV-GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G-~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
.++|||+|||+++|+++|+++|++|| .|..+++..+ +++|||||+|.+.++|++|++.|||..|.+ |
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~-------~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G-----r 95 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR-------DFDGTGALEFPSEEILVEALERLNNIEFRG-----S 95 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC-------SSSCCEEEEESSHHHHHHHHHHTTTEEETT-----E
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC-------CCCCEEEEEECCHHHHHHHHHHcCCCEECC-----e
Confidence 68999999999999999999999999 8999888543 266899999999999999999999999966 5
Q ss_pred ceEEEeecCCCC
Q 030465 156 FLRLQFSRNPGP 167 (177)
Q Consensus 156 ~l~V~~a~~~~~ 167 (177)
.|+|++++.+++
T Consensus 96 ~i~V~~a~~~p~ 107 (111)
T 2jvr_A 96 VITVERDDNPPP 107 (111)
T ss_dssp EEEEEESCC---
T ss_pred EEEEEECCCCCC
Confidence 899999987644
No 103
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.82 E-value=8.8e-20 Score=132.15 Aligned_cols=78 Identities=21% Similarity=0.371 Sum_probs=72.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|+++|++||.|.+++|+.++ .+++++|||||+|.+.++|++|++.||+..|.+ +.
T Consensus 63 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~~ 134 (140)
T 2ku7_A 63 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDY---ETEKHRGFAFVEFELAEDAAAAIDNMNESELFG-----RT 134 (140)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCT---TTCCCCSEEEEEESCHHHHHHHHHHSTEEEETT-----EE
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecC---CCCCcCcEEEEEECCHHHHHHHHHHhCCCEECC-----EE
Confidence 7999999999999999999999999999999998886 578899999999999999999999999999966 58
Q ss_pred eEEEee
Q 030465 157 LRLQFS 162 (177)
Q Consensus 157 l~V~~a 162 (177)
|+|+||
T Consensus 135 l~v~~A 140 (140)
T 2ku7_A 135 IRVNLA 140 (140)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 999986
No 104
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.81 E-value=5.3e-21 Score=131.71 Aligned_cols=84 Identities=18% Similarity=0.283 Sum_probs=73.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+.++|||+|||+++|+++|+++|++||.|.. .++.+. .+++++|||||+|.+.++|++|++ ||+..|.+ +
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~---~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g-----~ 85 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDV---RTGTNRKFGYVDFESAEDLEKALE-LTGLKVFG-----N 85 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEE---EEETTTTEEEEEESSHHHHHHHHH-GGGCCBTT-----B
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecC---CCCCcCcEEEEEECCHHHHHHHHh-cCCcEECC-----c
Confidence 3689999999999999999999999999877 555554 457889999999999999999998 99999976 5
Q ss_pred ceEEEeecCCCCCC
Q 030465 156 FLRLQFSRNPGPRS 169 (177)
Q Consensus 156 ~l~V~~a~~~~~r~ 169 (177)
.|+|+|++.+..+.
T Consensus 86 ~l~V~~a~~~~~~~ 99 (101)
T 1fj7_A 86 EIKLEKPKGRDGTR 99 (101)
T ss_dssp CCEEECCSCCCCSS
T ss_pred EEEEEEcCCCCCCC
Confidence 79999998765554
No 105
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.81 E-value=2.1e-19 Score=136.37 Aligned_cols=82 Identities=21% Similarity=0.311 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCC
Q 030465 75 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 154 (177)
Q Consensus 75 ~~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~ 154 (177)
.++++|||+|||+++|+++|+++|++||.|.+|+|+.++ +++++|||||+|.+.++|++|++.||+..|.+
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~----~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~G----- 156 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR----SGRSLGTADVHFERRADALKAMKQYKGVPLDG----- 156 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT----TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSS-----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC----CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECC-----
Confidence 447899999999999999999999999999999998875 57889999999999999999999999999976
Q ss_pred cceEEEeecCC
Q 030465 155 KFLRLQFSRNP 165 (177)
Q Consensus 155 r~l~V~~a~~~ 165 (177)
+.|+|+||...
T Consensus 157 r~l~V~~a~~~ 167 (177)
T 2f3j_A 157 RPMDIQLVASQ 167 (177)
T ss_dssp SBCEEEEESSG
T ss_pred EEEEEEEecCC
Confidence 48999999654
No 106
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=6.9e-20 Score=132.08 Aligned_cols=80 Identities=16% Similarity=0.282 Sum_probs=70.9
Q ss_pred CCCeEEEcCCCCCCCHHHHH----HhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCC
Q 030465 76 ASSTLYVEGLPADSTKREVA----HIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 151 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~----~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~ 151 (177)
++++|||+|||+++++++|+ ++|++||.|.+|.+.. +++++|||||+|.+.++|+.|++.|||..|.+
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~------~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g-- 99 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL------SDDNSGKAYIVFATQESAQAFVEAFQGYPFQG-- 99 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC------CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT--
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc------CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC--
Confidence 37899999999999999876 6999999999987742 46788999999999999999999999999976
Q ss_pred CCCcceEEEeecCCC
Q 030465 152 PDSKFLRLQFSRNPG 166 (177)
Q Consensus 152 ~~~r~l~V~~a~~~~ 166 (177)
++|+|+||+.+.
T Consensus 100 ---r~l~V~~a~~~~ 111 (127)
T 2a3j_A 100 ---NPLVITFSETPQ 111 (127)
T ss_dssp ---SCCEEEECCCCC
T ss_pred ---CEEEEEEccCcc
Confidence 489999998653
No 107
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=9.8e-20 Score=127.18 Aligned_cols=79 Identities=20% Similarity=0.396 Sum_probs=71.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|+++|++||.|.+|+|+.++ |||||+|.+.++|++|++.||+..|.+ +.
T Consensus 25 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~---------g~afV~f~~~~~a~~A~~~l~g~~~~g-----~~ 90 (109)
T 1x4g_A 25 NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK---------GYSFVRFSTHESAAHAIVSVNGTTIEG-----HV 90 (109)
T ss_dssp CCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTT---------TEEEEEESSHHHHHHHHHHHTTCEETT-----EE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC---------CEEEEEECCHHHHHHHHHHcCCCEECC-----cE
Confidence 7899999999999999999999999999999998763 699999999999999999999999976 58
Q ss_pred eEEEeecCCCCCC
Q 030465 157 LRLQFSRNPGPRS 169 (177)
Q Consensus 157 l~V~~a~~~~~r~ 169 (177)
|+|+|++.+....
T Consensus 91 l~v~~a~~~~~~~ 103 (109)
T 1x4g_A 91 VKCYWGKESPDMT 103 (109)
T ss_dssp CEEECCCCCCSSC
T ss_pred EEEEecCCCCCCC
Confidence 9999998765444
No 108
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4e-20 Score=128.90 Aligned_cols=83 Identities=14% Similarity=0.191 Sum_probs=73.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCC-EEEEEEe-ecCcccCCCCcceEEEEEecCHHHHHHHHHHhC--CCeeCCCCC
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVG-YKEVRLV-IKESKLRGGDPLILCFVDFENPACAATALSALQ--GYRMDEDDP 152 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~-i~~v~l~-~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~--g~~l~~~~~ 152 (177)
.++|||+|||+++|+++|+++|++||. |.+|+++ .++ .+++++|||||+|.+.++|++|++.|| +..+.+
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~---~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g--- 81 (109)
T 2dis_A 8 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA---DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--- 81 (109)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSC---TTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT---
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCC---CCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC---
Confidence 689999999999999999999999998 9999987 554 567899999999999999999999996 588866
Q ss_pred CCcceEEEeecCCCC
Q 030465 153 DSKFLRLQFSRNPGP 167 (177)
Q Consensus 153 ~~r~l~V~~a~~~~~ 167 (177)
+.|+|+|++.+..
T Consensus 82 --~~l~V~~a~~~~~ 94 (109)
T 2dis_A 82 --HQIAVDWAEPEID 94 (109)
T ss_dssp --BCCEEEESCSSCS
T ss_pred --CeEEEEEcCCCCC
Confidence 5799999986543
No 109
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=122.66 Aligned_cols=78 Identities=23% Similarity=0.296 Sum_probs=70.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|+++|++||.|.+|+++. +||||+|.+.++|++|++.||+..|.+ +.
T Consensus 9 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~-----------~~afV~f~~~~~a~~A~~~l~g~~~~g-----~~ 72 (90)
T 2dnp_A 9 TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK-----------DYAFVHMEKEADAKAAIAQLNGKEVKG-----KR 72 (90)
T ss_dssp SCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS-----------SCEEEEESCHHHHHHHHHHHTTCEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC-----------CEEEEEECCHHHHHHHHHHhCCCEECC-----cE
Confidence 78999999999999999999999999999999863 299999999999999999999999966 58
Q ss_pred eEEEeecCCCCCCC
Q 030465 157 LRLQFSRNPGPRSV 170 (177)
Q Consensus 157 l~V~~a~~~~~r~~ 170 (177)
|+|+|++.+.++.+
T Consensus 73 l~v~~a~~~~~~~~ 86 (90)
T 2dnp_A 73 INVELSTKGQKKSG 86 (90)
T ss_dssp CEEEESCCCCCCCS
T ss_pred EEEEECCCCCCCCC
Confidence 99999987655543
No 110
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.7e-20 Score=131.34 Aligned_cols=81 Identities=21% Similarity=0.332 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCC
Q 030465 75 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 154 (177)
Q Consensus 75 ~~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~ 154 (177)
.+.++|||+|||+++|+++|+++|++||.|.++.++.++ .+++++|||||+|.+.++|++||+ ||+..|.+
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~---~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g----- 93 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYG---PNGKATGEGFVEFRNEADYKAALC-RHKQYMGN----- 93 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEEC---TTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTT-----
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEEC---CCCCCCeEEEEEECCHHHHHHHHH-hCCCeECC-----
Confidence 347899999999999999999999999999885555554 578899999999999999999999 99999966
Q ss_pred cceEEEeecC
Q 030465 155 KFLRLQFSRN 164 (177)
Q Consensus 155 r~l~V~~a~~ 164 (177)
|.|+|+++..
T Consensus 94 r~i~V~~a~~ 103 (124)
T 1wel_A 94 RFIQVHPITK 103 (124)
T ss_dssp SCBEEEEECH
T ss_pred cEEEEEECCH
Confidence 5899999864
No 111
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.81 E-value=5.9e-20 Score=127.75 Aligned_cols=80 Identities=21% Similarity=0.365 Sum_probs=71.8
Q ss_pred CCeEEEcCCCCCC------CHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCC
Q 030465 77 SSTLYVEGLPADS------TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 150 (177)
Q Consensus 77 ~~tLfV~nLp~~~------te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~ 150 (177)
.++|||+|||+++ |+++|+++|++||.|.+|+|+. .+|+++|||||+|.+.++|++|++.|||..|.++
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~-----~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE-----EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC-----BTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC-----CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 6899999999999 7899999999999999998872 3688999999999999999999999999999763
Q ss_pred CCCCcceEEEeecCC
Q 030465 151 DPDSKFLRLQFSRNP 165 (177)
Q Consensus 151 ~~~~r~l~V~~a~~~ 165 (177)
+ +|+|+++...
T Consensus 90 ~----~l~V~~a~~~ 100 (105)
T 2nlw_A 90 H----TFRVNLFTDF 100 (105)
T ss_dssp C----EEEEECSCCC
T ss_pred c----eEEEEEcchH
Confidence 1 7999999643
No 112
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=4.5e-20 Score=127.05 Aligned_cols=79 Identities=27% Similarity=0.383 Sum_probs=71.0
Q ss_pred CeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcce
Q 030465 78 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 157 (177)
Q Consensus 78 ~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~l 157 (177)
++|||+|||+++|+++|+++|++||.|.+|+++.+ ++|||||+|.+.++|++|++.||+..+.+ +.|
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~~l 67 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN--------PPGFAFVEFEDPRDAEDAVRGLDGKVICG-----SRV 67 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS--------SSSEEEEECSSHHHHHHHHHHHHHSCSSS-----CCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--------CCCEEEEEECCHHHHHHHHHHHCCCeECC-----cEE
Confidence 58999999999999999999999999999999875 35799999999999999999999999976 479
Q ss_pred EEEeecCCCCCC
Q 030465 158 RLQFSRNPGPRS 169 (177)
Q Consensus 158 ~V~~a~~~~~r~ 169 (177)
+|+|++.+..+.
T Consensus 68 ~V~~a~~~~~~~ 79 (101)
T 2hvz_A 68 RVELSTGMPRRS 79 (101)
T ss_dssp EEEESSSCCCSS
T ss_pred EEEEccCCCCcc
Confidence 999998765443
No 113
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.81 E-value=1.3e-19 Score=127.44 Aligned_cols=82 Identities=22% Similarity=0.427 Sum_probs=72.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCC
Q 030465 73 PPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 152 (177)
Q Consensus 73 p~~~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~ 152 (177)
|+.++++|||+|||+++|+++|+++|++||.|.+|+++.+ +.++|||||+|.+.++|++|++.|||..+.+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--- 74 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT------PETRGTAYVVYEDIFDAKNAVDHLSGFNVSN--- 74 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS------TTTTTCEEEEESSHHHHHHHHHHHTTCBSSS---
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC------CCCCcEEEEEECCHHHHHHHHHHcCCCEECC---
Confidence 3445799999999999999999999999999999999865 3457899999999999999999999999966
Q ss_pred CCcceEEEeecCC
Q 030465 153 DSKFLRLQFSRNP 165 (177)
Q Consensus 153 ~~r~l~V~~a~~~ 165 (177)
+.|+|+|++.+
T Consensus 75 --~~l~v~~a~~~ 85 (115)
T 3lqv_A 75 --RYLVVLYYNAN 85 (115)
T ss_dssp --CBCEEEECCHH
T ss_pred --eEEEEEEecCC
Confidence 48999999753
No 114
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.6e-20 Score=129.64 Aligned_cols=80 Identities=15% Similarity=0.174 Sum_probs=72.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCE-EEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCC
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGY-KEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 154 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i-~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~ 154 (177)
+.++|||+|||+++|+++|+++|++||.| ..|+|+.++ +++++|||||+|.+.++|++||+. |+..|.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~----~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~g----- 83 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN----NGQGLGQALVQFKNEDDARKSERL-HRKKLNG----- 83 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT----TSSCSSCEEEECSSHHHHHHHGGG-CSEEETT-----
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC----CCCcceEEEEEECCHHHHHHHHHh-CCCccCC-----
Confidence 37899999999999999999999999999 889998875 688999999999999999999987 9999966
Q ss_pred cceEEEeecCC
Q 030465 155 KFLRLQFSRNP 165 (177)
Q Consensus 155 r~l~V~~a~~~ 165 (177)
+.|+|+++..+
T Consensus 84 r~i~v~~a~~~ 94 (114)
T 2cpy_A 84 REAFVHVVTLE 94 (114)
T ss_dssp EEEEEEEECHH
T ss_pred eEEEEEECCHH
Confidence 58999998644
No 115
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.9e-20 Score=124.28 Aligned_cols=84 Identities=20% Similarity=0.276 Sum_probs=71.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCC-EEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCC-CeeCCCCCC
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVG-YKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQG-YRMDEDDPD 153 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~-i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g-~~l~~~~~~ 153 (177)
+.++|||+|||+++|+++|+++|++||. |..+.+.. +|||||+|.+.++|++|++.||+ ..|.+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~----------~g~afV~f~~~~~A~~A~~~l~g~~~~~g---- 72 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLK----------SGYAFVDYPDQNWAIRAIETLSGKVELHG---- 72 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEE----------TTEEEECCSCHHHHHHHHHHHTTTCEETT----
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcC----------CCEEEEEECCHHHHHHHHHHccCCeeECC----
Confidence 3789999999999999999999999999 55555532 36999999999999999999999 99966
Q ss_pred CcceEEEeecCCCCCCCCCCC
Q 030465 154 SKFLRLQFSRNPGPRSVFGAR 174 (177)
Q Consensus 154 ~r~l~V~~a~~~~~r~~~g~~ 174 (177)
+.|+|+|++.+..+....+.
T Consensus 73 -~~l~v~~a~~~~~~~~~~~~ 92 (93)
T 2cqh_A 73 -KIMEVDYSVSKKLRSSGPSS 92 (93)
T ss_dssp -EECEEEECCCCCCCCCSCCC
T ss_pred -EEEEEEEccCccccCCCCCC
Confidence 58999999887666654433
No 116
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.81 E-value=8.3e-20 Score=129.71 Aligned_cols=79 Identities=16% Similarity=0.223 Sum_probs=72.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCC---EEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCC
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVG---YKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 152 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~---i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~ 152 (177)
+.++|||+|||+++|+++|+++|+.||. |..|+|+.++ .++++|||||+|.+.++|++||+ +|+..|.+
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~----~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g--- 87 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTR----EGRQSGEAFVELESEDDVKLALK-KDRESMGH--- 87 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECS----SSCEEEEEEEEBSSHHHHHHHGG-GTTEEETT---
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECC----CCCCCeEEEEEECCHHHHHHHHh-cCCCeECC---
Confidence 3789999999999999999999999998 8999999886 38899999999999999999999 99999965
Q ss_pred CCcceEEEeecC
Q 030465 153 DSKFLRLQFSRN 164 (177)
Q Consensus 153 ~~r~l~V~~a~~ 164 (177)
|.|+|.++..
T Consensus 88 --r~i~V~~a~~ 97 (118)
T 2db1_A 88 --RYIEVFKSHR 97 (118)
T ss_dssp --EEEEEEEECH
T ss_pred --eEEEEEECCH
Confidence 5899999853
No 117
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.81 E-value=3.3e-20 Score=120.95 Aligned_cols=75 Identities=19% Similarity=0.329 Sum_probs=69.2
Q ss_pred eEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcceE
Q 030465 79 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLR 158 (177)
Q Consensus 79 tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~l~ 158 (177)
+|||+|||+++|+++|+++|++||.|.+|+++.++ .+++++|||||+|.+.++|++|++ ||+..+.+ ++|+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g-----~~l~ 71 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDK---TTNRHRGFGFVTFESEDIVEKVCE-IHFHEINN-----KMVE 71 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCS---SSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSS-----CCCE
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecC---CCCCcCcEEEEEECCHHHHHHHHH-CCCCEECC-----EEEE
Confidence 59999999999999999999999999999998876 578899999999999999999997 99999976 4799
Q ss_pred EEee
Q 030465 159 LQFS 162 (177)
Q Consensus 159 V~~a 162 (177)
|++|
T Consensus 72 v~~A 75 (75)
T 2mss_A 72 CKKA 75 (75)
T ss_dssp EECC
T ss_pred EEeC
Confidence 9886
No 118
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=120.69 Aligned_cols=73 Identities=22% Similarity=0.378 Sum_probs=67.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHh-CCCeeCCCCCCCc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSAL-QGYRMDEDDPDSK 155 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l-~g~~l~~~~~~~r 155 (177)
.++|||+|||+++|+++|+++|++||.|.+|+++.++ |||||+|.+.++|++|++.| ++..+.+ +
T Consensus 12 ~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~k---------g~afV~f~~~~~A~~a~~~l~~~~~~~g-----~ 77 (85)
T 2ytc_A 12 ITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQ---------QCAFIQFATRQAAEVAAEKSFNKLIVNG-----R 77 (85)
T ss_dssp CCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGG---------TEEEEEESSHHHHHHHHHTTTTTCEETT-----E
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCC---------CEEEEEECCHHHHHHHHHHhcCCeeECC-----C
Confidence 6899999999999999999999999999999998643 69999999999999999988 9999976 5
Q ss_pred ceEEEeec
Q 030465 156 FLRLQFSR 163 (177)
Q Consensus 156 ~l~V~~a~ 163 (177)
+|+|+||+
T Consensus 78 ~l~v~~ak 85 (85)
T 2ytc_A 78 RLNVKWGR 85 (85)
T ss_dssp ECCEEECC
T ss_pred EEEEEecC
Confidence 89999985
No 119
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.81 E-value=1.3e-19 Score=126.94 Aligned_cols=77 Identities=31% Similarity=0.570 Sum_probs=69.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+.++|||+|||+++|+++|+++|++||.|.+|+++ +|||||+|.+.++|++|++.||+..|.+ +
T Consensus 30 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----------kg~afV~f~~~~~A~~Ai~~l~g~~~~g-----~ 93 (108)
T 2jvo_A 30 SNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----------NGFAFVEFEEAESAAKAIEEVHGKSFAN-----Q 93 (108)
T ss_dssp SCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----------TTEEEEECSSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----------CCEEEEEECCHHHHHHHHHHcCCCEECC-----e
Confidence 37999999999999999999999999999999987 2599999999999999999999999966 5
Q ss_pred ceEEEeecCCCCC
Q 030465 156 FLRLQFSRNPGPR 168 (177)
Q Consensus 156 ~l~V~~a~~~~~r 168 (177)
.|+|+|++.+..+
T Consensus 94 ~l~V~~a~~~~~r 106 (108)
T 2jvo_A 94 PLEVVYSKLPAKR 106 (108)
T ss_dssp ECEEESCSCCC--
T ss_pred EEEEEEecCCCCC
Confidence 8999999876554
No 120
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.81 E-value=2e-19 Score=123.45 Aligned_cols=76 Identities=22% Similarity=0.364 Sum_probs=68.7
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCC
Q 030465 74 PDASSTLYVEGLPA-DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 152 (177)
Q Consensus 74 ~~~~~tLfV~nLp~-~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~ 152 (177)
..++++|||+|||+ ++++++|+++|++||.|.+|++. +|||||+|.+.++|++|++.||+..+.+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----------~g~afV~f~~~~~A~~Ai~~l~g~~~~g--- 84 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----------NAFGFIQFDNPQSVRDAIEXESQEMNFG--- 84 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----------SSEEEEEESSHHHHHHHHHHHTTSEETT---
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----------CCEEEEEECCHHHHHHHHHHcCCCEECC---
Confidence 33489999999998 99999999999999999999883 3699999999999999999999999966
Q ss_pred CCcceEEEeecCC
Q 030465 153 DSKFLRLQFSRNP 165 (177)
Q Consensus 153 ~~r~l~V~~a~~~ 165 (177)
+.|+|+|++.+
T Consensus 85 --~~l~V~~a~~~ 95 (97)
T 2xnq_A 85 --KKLILEVSSSN 95 (97)
T ss_dssp --EECEEEECCCC
T ss_pred --EEEEEEecCCC
Confidence 58999999764
No 121
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4e-20 Score=120.94 Aligned_cols=76 Identities=18% Similarity=0.260 Sum_probs=70.2
Q ss_pred CeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcce
Q 030465 78 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 157 (177)
Q Consensus 78 ~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~l 157 (177)
++|||+|||+++|+++|+++|++||.|.+|+++.++ .+++++|||||+|.+.++|++|++.++ ..+.+ +.|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g-----~~l 71 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDP---LTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDS-----KTI 71 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCC---CSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSS-----CCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCC---CCCCcCceEEEEEcCHHHHHHHHHhCC-CccCC-----EEE
Confidence 479999999999999999999999999999999886 568899999999999999999999999 88866 479
Q ss_pred EEEee
Q 030465 158 RLQFS 162 (177)
Q Consensus 158 ~V~~a 162 (177)
+|++|
T Consensus 72 ~v~~a 76 (77)
T 1uaw_A 72 DPKVA 76 (77)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99987
No 122
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.80 E-value=3e-19 Score=123.48 Aligned_cols=75 Identities=19% Similarity=0.392 Sum_probs=68.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|+++|++||.|.+|+++. +||||+|.+.++|++|++.||+..|.+ +.
T Consensus 11 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~-----------~~afV~f~~~~~a~~A~~~l~g~~~~g-----~~ 74 (103)
T 2dgu_A 11 VKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK-----------DYAFIHFDERDGAVKAMEEMNGKDLEG-----EN 74 (103)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS-----------SCEEEEESSHHHHHHHHHHHTTEEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-----------CEEEEEeCCHHHHHHHHHHHCCCccCC-----CE
Confidence 68999999999999999999999999999998863 399999999999999999999999976 58
Q ss_pred eEEEeecCCCC
Q 030465 157 LRLQFSRNPGP 167 (177)
Q Consensus 157 l~V~~a~~~~~ 167 (177)
|+|+|++.+..
T Consensus 75 l~v~~a~~~~~ 85 (103)
T 2dgu_A 75 IEIVFAKPPDQ 85 (103)
T ss_dssp EEEEECCCCCC
T ss_pred EEEEEcCCCcc
Confidence 99999987644
No 123
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=8.4e-19 Score=119.93 Aligned_cols=80 Identities=25% Similarity=0.337 Sum_probs=70.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+.++|||+|| ++|+++|+++|++||.|.+|+|.. ++|||||+|.+.++|++|++.||+..|.+ +
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~---------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g-----~ 77 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP---------PRNCAFVTYEKMESADQAVAELNGTQVES-----V 77 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHTTTEEETT-----E
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC---------CCCEEEEEECCHHHHHHHHHHhCCCeECC-----e
Confidence 3789999996 899999999999999999999843 34799999999999999999999999966 5
Q ss_pred ceEEEeecCCCCCCCC
Q 030465 156 FLRLQFSRNPGPRSVF 171 (177)
Q Consensus 156 ~l~V~~a~~~~~r~~~ 171 (177)
+|+|+|++.+..+...
T Consensus 78 ~l~v~~a~~~~~~~~~ 93 (97)
T 1x5p_A 78 QLKVNIARKQPMLDSG 93 (97)
T ss_dssp EEEEECCSSCCCCCSS
T ss_pred EEEEEECCCCCCCCCC
Confidence 8999999887665543
No 124
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.80 E-value=1.5e-20 Score=126.78 Aligned_cols=80 Identities=19% Similarity=0.317 Sum_probs=71.4
Q ss_pred CeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcce
Q 030465 78 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 157 (177)
Q Consensus 78 ~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~l 157 (177)
++|||+|||+++++++|+++|++||.|.+|+++.++ .+++++|||||+|.+.+ |++|++.||+..+.+ +.|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g-----~~l 72 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDR---ETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMG-----RTI 72 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCS---SSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSS-----SSC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcC---CCCCcceEEEEEECCHH-HHHHHHHhCCCEECC-----eEE
Confidence 589999999999999999999999999999999886 56889999999999999 999999999999976 479
Q ss_pred EEEeecCCC
Q 030465 158 RLQFSRNPG 166 (177)
Q Consensus 158 ~V~~a~~~~ 166 (177)
+|++|..+.
T Consensus 73 ~V~~a~~~~ 81 (90)
T 2ki2_A 73 RVTEANPKK 81 (90)
T ss_dssp SEEEC----
T ss_pred EEEEcCCCC
Confidence 999997653
No 125
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.80 E-value=2e-19 Score=139.38 Aligned_cols=83 Identities=24% Similarity=0.290 Sum_probs=75.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCC
Q 030465 75 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 154 (177)
Q Consensus 75 ~~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~ 154 (177)
.+.+||||+|||+++||++|+++|++||.|.+|+|+.++ .+++++|||||+|.+.++|++|++.+|+..+.+
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~---~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g----- 84 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDM---ITRRSLGYAYVNFQQPADAERALDTMNFDVIKG----- 84 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT---TTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT-----
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeccc---CCCCccccccceeCCHHHHHHHHHHhhhhhcCC-----
Confidence 347899999999999999999999999999999999987 678899999999999999999999999999966
Q ss_pred cceEEEeecCC
Q 030465 155 KFLRLQFSRNP 165 (177)
Q Consensus 155 r~l~V~~a~~~ 165 (177)
+.|+|.++...
T Consensus 85 ~~i~~~~~~~~ 95 (213)
T 4f02_A 85 KPVRIMWSQRD 95 (213)
T ss_dssp EECEEEECCCC
T ss_pred ccccccccccc
Confidence 57999988654
No 126
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.80 E-value=8.8e-20 Score=143.69 Aligned_cols=80 Identities=11% Similarity=0.139 Sum_probs=73.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCC--CEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCC
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFV--GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 153 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G--~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~ 153 (177)
..++|||+|||+++|+++|+++|++|| .|.+|+|+.++ .++++||||||+|.+.++|++||+.||++.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~---~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~G---- 139 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENR---ANGQSKGFALVGVGSEASSKKLMDLLPKRELHG---- 139 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECT---TTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTT----
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecC---CCCccceEEEEEECCHHHHHHHHHHcCCCeECC----
Confidence 367899999999999999999999999 99999999987 679999999999999999999999999999976
Q ss_pred CcceEEEeec
Q 030465 154 SKFLRLQFSR 163 (177)
Q Consensus 154 ~r~l~V~~a~ 163 (177)
+.|+|+|++
T Consensus 140 -r~l~V~~a~ 148 (229)
T 3q2s_C 140 -QNPVVTPVN 148 (229)
T ss_dssp -BCCEEEECC
T ss_pred -EEeEEEECC
Confidence 579999985
No 127
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.80 E-value=1e-19 Score=124.06 Aligned_cols=80 Identities=23% Similarity=0.381 Sum_probs=70.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+.++|||+|||+++|+++|+++|++||.|..+ . .+++++|||||+|.+.++|++|++.||+..|.+ +
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~----~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 81 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV----S----QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG-----R 81 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----E----ETTEEEEEEEEEESSHHHHHHHHHHTTEEEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----C----CCCCcceEEEEEECCHHHHHHHHHHhCCCEECC-----e
Confidence 37899999999999999999999999887655 2 357789999999999999999999999999966 5
Q ss_pred ceEEEeecCCCCC
Q 030465 156 FLRLQFSRNPGPR 168 (177)
Q Consensus 156 ~l~V~~a~~~~~r 168 (177)
.|+|+|++.+..+
T Consensus 82 ~l~v~~a~~~~~~ 94 (96)
T 1fjc_A 82 SVSLYYTGEKGGT 94 (96)
T ss_dssp EEEEEECSSSCCC
T ss_pred EEEEEEcCCCCCC
Confidence 8999999765443
No 128
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.80 E-value=9.1e-20 Score=124.40 Aligned_cols=80 Identities=24% Similarity=0.380 Sum_probs=71.8
Q ss_pred CCCeEEEcCCCCCCCHHHHH----HhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCC
Q 030465 76 ASSTLYVEGLPADSTKREVA----HIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 151 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~----~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~ 151 (177)
++++|||+|||+++|+++|+ ++|++||.|.+|++.. +++++|||||+|.+.++|++|++.||+..+.+
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~------~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-- 78 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR------SLKMRGQAFVIFKEVSSATNALRSMQGFPFYD-- 78 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH------HHHHTTCEEEEESSHHHHHHHHHHHTTCEETT--
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc------CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECC--
Confidence 37999999999999999999 9999999999998863 25567899999999999999999999999966
Q ss_pred CCCcceEEEeecCCC
Q 030465 152 PDSKFLRLQFSRNPG 166 (177)
Q Consensus 152 ~~~r~l~V~~a~~~~ 166 (177)
+.|+|+|++.+.
T Consensus 79 ---~~l~v~~a~~~~ 90 (97)
T 1nu4_A 79 ---KPMRIQYAKTDS 90 (97)
T ss_dssp ---EECEEEECSSCC
T ss_pred ---cEEEEEEccCCC
Confidence 589999998754
No 129
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.79 E-value=2.5e-19 Score=134.10 Aligned_cols=79 Identities=22% Similarity=0.263 Sum_probs=70.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
..+|||+||++++|+++|+++|++||.|.+|+|..++ ++|||||+|++.++|++|++.|||..|.+ .++.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~-------~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g---~g~~ 115 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-------NQFQALLQYADPVSAQHAKLSLDGQNIYN---ACCT 115 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS-------SCEEEEEEESCHHHHHHHHHHSTTBCSSS---SCSC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC-------CCCEEEEEECCHHHHHHHHHHhCCCEecC---CCcE
Confidence 4679999999999999999999999999999986543 45899999999999999999999999976 2358
Q ss_pred eEEEeecCC
Q 030465 157 LRLQFSRNP 165 (177)
Q Consensus 157 l~V~~a~~~ 165 (177)
|+|+|++.+
T Consensus 116 L~V~~Ak~~ 124 (164)
T 1sjr_A 116 LRIDFSKLT 124 (164)
T ss_dssp EEEEECSSS
T ss_pred EEEEEecCC
Confidence 999999865
No 130
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.79 E-value=1.4e-19 Score=131.91 Aligned_cols=78 Identities=15% Similarity=0.209 Sum_probs=72.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCC---EEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCC
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVG---YKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 153 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~---i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~ 153 (177)
.++|||+|||+++|+++|+++|++||. |.+|+|+.++ . |+++|||||+|.+.++|++|++ ||+..|.+
T Consensus 44 ~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~---~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~g---- 114 (136)
T 2hgl_A 44 GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTR---E-GRQSGEAFVELGSEDDVKMALK-KDRESMGH---- 114 (136)
T ss_dssp TCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECS---S-SCEEEEEEEECSSHHHHHHHHT-TTEEESSS----
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECC---C-CCCCeEEEEEECCHHHHHHHHh-cCCCEECC----
Confidence 689999999999999999999999999 8899999886 4 8899999999999999999999 99999965
Q ss_pred CcceEEEeecC
Q 030465 154 SKFLRLQFSRN 164 (177)
Q Consensus 154 ~r~l~V~~a~~ 164 (177)
|.|+|.++..
T Consensus 115 -r~i~V~~a~~ 124 (136)
T 2hgl_A 115 -RYIEVFKSHR 124 (136)
T ss_dssp -SEEEEEECCH
T ss_pred -EEEEEEECCh
Confidence 5899999853
No 131
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=9.8e-19 Score=125.52 Aligned_cols=75 Identities=19% Similarity=0.286 Sum_probs=66.3
Q ss_pred eEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceE-EEEEecCHHHHHHHHHHhCCCeeCCCCCCCcce
Q 030465 79 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLIL-CFVDFENPACAATALSALQGYRMDEDDPDSKFL 157 (177)
Q Consensus 79 tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~-afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~l 157 (177)
.|||+||++.+|+++|+++|++||.|.+|+|+.. . || |||+|.+.++|++|++.|||..|.+. .+.|
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~----Gf~aFVef~~~~~A~~A~~~LnG~~i~g~---~~~l 94 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----N----GIQAMVEFESVLCAQKAKAALNGADIYAG---CCTL 94 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----S----SEEEEEEESSHHHHHHHHHHHTTCCCBTT---BSEE
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----C----CCEEEEEECCHHHHHHHHHHhCCCEecCC---CeEE
Confidence 4689999999999999999999999999998642 1 56 99999999999999999999999762 2479
Q ss_pred EEEeecCC
Q 030465 158 RLQFSRNP 165 (177)
Q Consensus 158 ~V~~a~~~ 165 (177)
+|+||+.+
T Consensus 95 ~V~~Ak~~ 102 (124)
T 2e5i_A 95 KIEYARPT 102 (124)
T ss_dssp EEECCSCS
T ss_pred EEEEecCC
Confidence 99999865
No 132
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.79 E-value=1.6e-19 Score=121.70 Aligned_cols=73 Identities=12% Similarity=0.058 Sum_probs=67.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
+..|||+||++.+||++|+++|.+||+|.+++++. +||||||+|.+.++|++|++.||+..|.+ |+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~g-----r~ 72 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---------NQGIALCKYTTREEANKAQMALNNCVLAN-----TT 72 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHTTEEETT-----EE
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---------CCcEEEEEECCHHHHHHHHHHhcCCEECC-----cE
Confidence 67899999999999999999999999999999865 34899999999999999999999999976 58
Q ss_pred eEEEeec
Q 030465 157 LRLQFSR 163 (177)
Q Consensus 157 l~V~~a~ 163 (177)
|+|++|.
T Consensus 73 I~V~~A~ 79 (89)
T 2wbr_A 73 IFAESPS 79 (89)
T ss_dssp EEEECCC
T ss_pred EEEEECC
Confidence 9999983
No 133
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.79 E-value=1.1e-19 Score=120.40 Aligned_cols=74 Identities=23% Similarity=0.402 Sum_probs=65.7
Q ss_pred CCeEEEcCCCCCC------CHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCC
Q 030465 77 SSTLYVEGLPADS------TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 150 (177)
Q Consensus 77 ~~tLfV~nLp~~~------te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~ 150 (177)
+++|||+|||+++ |+++|+++|++||.|.+|+++. .+|+++|||||+|.+.++|++|++.|||..|.++
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~-----~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE-----EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC-----BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC-----CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 3789999999999 7899999999999999999872 3688999999999999999999999999999763
Q ss_pred CCCCcceEE
Q 030465 151 DPDSKFLRL 159 (177)
Q Consensus 151 ~~~~r~l~V 159 (177)
+ +|+|
T Consensus 76 ~----~l~V 80 (81)
T 2krb_A 76 H----TFRV 80 (81)
T ss_dssp S----CCCC
T ss_pred e----eEEe
Confidence 1 5765
No 134
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=5.3e-19 Score=120.80 Aligned_cols=75 Identities=23% Similarity=0.371 Sum_probs=68.4
Q ss_pred CCeEEEcCCCC-CCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 77 SSTLYVEGLPA-DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 77 ~~tLfV~nLp~-~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+++|||+|||+ ++|+++|+++|++||.|.+|++. +|||||+|.+.++|++|++.||+..+.+ +
T Consensus 10 ~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 73 (96)
T 2kvi_A 10 KSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----------NAFGFIQFDNPQSVRDAIECESQEMNFG-----K 73 (96)
T ss_dssp CEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----------TTEEEEEESCHHHHHHHHHHHTCSSCBT-----T
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----------CCEEEEEECCHHHHHHHHHHcCCCeeCC-----c
Confidence 79999999998 99999999999999999999883 2599999999999999999999999976 4
Q ss_pred ceEEEeecCCCC
Q 030465 156 FLRLQFSRNPGP 167 (177)
Q Consensus 156 ~l~V~~a~~~~~ 167 (177)
+|+|+|++.+..
T Consensus 74 ~l~V~~a~~~~~ 85 (96)
T 2kvi_A 74 KLILEVSSSNAR 85 (96)
T ss_dssp TBCEEEEECCCC
T ss_pred EEEEEEcCcCCC
Confidence 799999987543
No 135
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=2e-19 Score=123.75 Aligned_cols=74 Identities=19% Similarity=0.377 Sum_probs=68.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|+++|++||.|.+|++... +|||||+|.+.++|++|++.||+..|.+ +.
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~---------~g~afV~f~~~~~A~~Ai~~l~g~~~~g-----~~ 92 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPE---------KGCCFIKYDTHEQAAVCIVALANFPFQG-----RN 92 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETT---------TTEEEEECSSHHHHHHHHHHHTTCEETT-----EE
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecC---------CCEEEEEECCHHHHHHHHHHhCCCeECC-----eE
Confidence 689999999999999999999999999999998733 4799999999999999999999999976 58
Q ss_pred eEEEeecC
Q 030465 157 LRLQFSRN 164 (177)
Q Consensus 157 l~V~~a~~ 164 (177)
|+|+|+++
T Consensus 93 l~V~~a~~ 100 (101)
T 2la4_A 93 LRTGWGKE 100 (101)
T ss_dssp CCCCBCCC
T ss_pred EEEEeccC
Confidence 99999975
No 136
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-19 Score=126.26 Aligned_cols=80 Identities=16% Similarity=0.237 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhCCCCC---EEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCC
Q 030465 75 DASSTLYVEGLPADSTKREVAHIFRPFVG---YKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 151 (177)
Q Consensus 75 ~~~~tLfV~nLp~~~te~~L~~lF~~~G~---i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~ 151 (177)
+..++|||+|||+++|+++|+++|+.||. |..|+|+.++ . |+++|||||+|.+.++|++|++ +|+..|.+
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~---~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~g-- 81 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNR---D-GKRRGDALIEMESEQDVQKALE-KHRMYMGQ-- 81 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCT---T-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSS--
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECC---C-CCEeeEEEEEECCHHHHHHHHH-hCcceeCC--
Confidence 34789999999999999999999999988 8999998886 3 8899999999999999999999 99999865
Q ss_pred CCCcceEEEeecC
Q 030465 152 PDSKFLRLQFSRN 164 (177)
Q Consensus 152 ~~~r~l~V~~a~~ 164 (177)
|.|+|.++..
T Consensus 82 ---r~i~V~~a~~ 91 (107)
T 2lmi_A 82 ---RYVEVYEINN 91 (107)
T ss_dssp ---SCCCCEECCH
T ss_pred ---eEEEEEECCH
Confidence 5799999864
No 137
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.78 E-value=9.9e-19 Score=149.45 Aligned_cols=85 Identities=22% Similarity=0.380 Sum_probs=77.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCC
Q 030465 75 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 154 (177)
Q Consensus 75 ~~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~ 154 (177)
.+.++|||+|||++||+++|+++|++||.|..|+|+.++ .+++++|||||+|.+.++|++||+.||++.|.+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~---~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~g----- 171 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSK---RSGKPRGYAFIEYEHERDMHSAYKHADGKKIDG----- 171 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccC---CCCCccceEEEeeccHHHHHHHHHHcCCCEECC-----
Confidence 346899999999999999999999999999999999886 578899999999999999999999999999966
Q ss_pred cceEEEeecCCCC
Q 030465 155 KFLRLQFSRNPGP 167 (177)
Q Consensus 155 r~l~V~~a~~~~~ 167 (177)
+.|+|+|++....
T Consensus 172 r~i~V~~a~~~~~ 184 (437)
T 3pgw_S 172 RRVLVDVERGRTV 184 (437)
T ss_pred EEEEEEEeCCCCC
Confidence 4899999986533
No 138
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=5e-19 Score=124.38 Aligned_cols=75 Identities=23% Similarity=0.264 Sum_probs=68.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|+++|++||.|.+|+|+.. ++||||+|.+.++|++|++.||++.|.+ ++
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~---------~g~afV~f~~~~~A~~Ai~~l~g~~~~g-----~~ 75 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG---------GITAIVEFLEPLEARKAFRHLAYSKFHH-----VP 75 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS---------SSCEEEEESCHHHHHHHHHHHTTCBSSS-----SB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---------CCEEEEEeCCHHHHHHHHHHhCCCEECC-----eE
Confidence 579999999999999999999999999999988643 3699999999999999999999999976 58
Q ss_pred eEEEeecCC
Q 030465 157 LRLQFSRNP 165 (177)
Q Consensus 157 l~V~~a~~~ 165 (177)
|+|+|++..
T Consensus 76 l~V~~a~~~ 84 (111)
T 1whx_A 76 LYLEWAPIG 84 (111)
T ss_dssp CEEEEEETT
T ss_pred EEEEECCCC
Confidence 999999754
No 139
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.78 E-value=8.7e-20 Score=133.50 Aligned_cols=80 Identities=20% Similarity=0.338 Sum_probs=71.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++||++|+++|++|| |.+|+|+.++ .++++|||||+|++.++|++|| .+|+..|.+ |.
T Consensus 46 ~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~----~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~g-----R~ 114 (139)
T 2hgn_A 46 GHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP----DGRVTGEADVEFATHEEAVAAM-SKDRANMQH-----RY 114 (139)
T ss_dssp CCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS----SSCSSCCCEEECSHHHHHHHHT-TCCSCSSSS-----CC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC----CCCCceEEEEEeCCHHHHHHHH-hhCCCEECC-----EE
Confidence 68999999999999999999999999 7799998886 3889999999999999999999 789999966 57
Q ss_pred eEEEeecCCCC
Q 030465 157 LRLQFSRNPGP 167 (177)
Q Consensus 157 l~V~~a~~~~~ 167 (177)
|+|.++..+..
T Consensus 115 i~V~~a~~~~~ 125 (139)
T 2hgn_A 115 IELFLNSTTGA 125 (139)
T ss_dssp CCCEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999876544
No 140
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=5.9e-19 Score=123.97 Aligned_cols=76 Identities=18% Similarity=0.242 Sum_probs=69.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
..+|||+|||+++|+++|+++|++| .|.+|+|+.++ .|+++|||||+|.+.++|++|| .+|+..|.+ |.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~----~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~g-----r~ 84 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH----VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQ-----RY 84 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT----TCCCCSEEEEECSSHHHHHHHH-HTTTEEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC----CCCCCeEEEEEECCHHHHHHHH-hcCCCeECC-----eE
Confidence 5799999999999999999999999 89999999886 4889999999999999999999 799999965 58
Q ss_pred eEEEeec
Q 030465 157 LRLQFSR 163 (177)
Q Consensus 157 l~V~~a~ 163 (177)
|+|..+.
T Consensus 85 i~V~~a~ 91 (109)
T 2dnn_A 85 VEVSPAT 91 (109)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 9998774
No 141
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.78 E-value=9e-19 Score=128.83 Aligned_cols=77 Identities=26% Similarity=0.400 Sum_probs=70.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.+ ++|||||+|.+.++|++|++.||+..|.+ +
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 138 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN--------PPGFAFVEFEDPRDAADAVRELDGRTLCG-----C 138 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS--------SCSEEEEEESSHHHHHHHHHHHSSSCSSS-----S
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC--------CCcEEEEEECCHHHHHHHHHHcCCCEECC-----e
Confidence 3799999999999999999999999999999999765 35799999999999999999999999966 5
Q ss_pred ceEEEeecCC
Q 030465 156 FLRLQFSRNP 165 (177)
Q Consensus 156 ~l~V~~a~~~ 165 (177)
+|+|+|++.+
T Consensus 139 ~l~v~~a~~~ 148 (150)
T 2i2y_A 139 RVRVELSNGE 148 (150)
T ss_dssp CCEEEECCCC
T ss_pred EEEEEEcCCC
Confidence 8999999764
No 142
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.78 E-value=1.2e-18 Score=125.90 Aligned_cols=78 Identities=22% Similarity=0.267 Sum_probs=68.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceE-EEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLIL-CFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~-afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
--.|||+||++.+|+++|+++|++||.|.+|++..+. +|| |||+|.+.++|++|++.|||..|.+. .+
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~--------~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~---~~ 96 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN--------NQFQALLQYADPVSAQHAKLSLDGQNIYNA---CC 96 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET--------TEEEEEEEESCHHHHHHHHHHHTTCEEETT---EE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC--------CCcEEEEEECCHHHHHHHHHHcCCCeecCC---Cc
Confidence 3457899999999999999999999999999887642 467 99999999999999999999999772 25
Q ss_pred ceEEEeecCC
Q 030465 156 FLRLQFSRNP 165 (177)
Q Consensus 156 ~l~V~~a~~~ 165 (177)
+|+|+||+.+
T Consensus 97 ~LrI~~ak~~ 106 (130)
T 3zzy_A 97 TLRIDFSKLT 106 (130)
T ss_dssp EEEEEECSCS
T ss_pred EEEEEecCCC
Confidence 8999999865
No 143
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.78 E-value=7.4e-20 Score=133.65 Aligned_cols=86 Identities=23% Similarity=0.442 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEE------EEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeC
Q 030465 75 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEV------RLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMD 148 (177)
Q Consensus 75 ~~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v------~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~ 148 (177)
.++++|||+|||+++|+++|+++|++||.|..+ .+... .+++++|||||+|.+.++|++|++.||++.|.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~----~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM----KEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE----EETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec----cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 347999999999999999999999999998764 11111 25778999999999999999999999999996
Q ss_pred CCCCCCcceEEEeecCCCCCC
Q 030465 149 EDDPDSKFLRLQFSRNPGPRS 169 (177)
Q Consensus 149 ~~~~~~r~l~V~~a~~~~~r~ 169 (177)
+ +.|+|+||++..++.
T Consensus 119 g-----~~l~V~~a~~~~~~~ 134 (143)
T 3egn_A 119 G-----KPMVVQFARSARPKQ 134 (143)
T ss_dssp T-----EECEEEECCCSCC--
T ss_pred C-----cEEEEEECCCCCCcc
Confidence 6 589999998765544
No 144
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.77 E-value=4.6e-18 Score=125.11 Aligned_cols=80 Identities=20% Similarity=0.370 Sum_probs=74.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+.++|||+|||+++|+++|+++|++||.|.+++++.+. .++.++|||||+|.+.++|++|++.|||..+.+ +
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 157 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDM---QTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG-----R 157 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECT---TTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT-----E
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecC---CCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC-----c
Confidence 37899999999999999999999999999999999886 578899999999999999999999999999965 5
Q ss_pred ceEEEeec
Q 030465 156 FLRLQFSR 163 (177)
Q Consensus 156 ~l~V~~a~ 163 (177)
+|+|+||+
T Consensus 158 ~i~v~~a~ 165 (166)
T 3md3_A 158 PLRINWAA 165 (166)
T ss_dssp ECEEEESC
T ss_pred EEEEEecC
Confidence 89999985
No 145
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.77 E-value=2.2e-18 Score=121.75 Aligned_cols=79 Identities=13% Similarity=0.200 Sum_probs=66.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|+++|++||.|.+|+|+.+ |||||+|.+.++|++||+.||++.|.++......
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~ 85 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 85 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT----------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCB
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC----------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEE
Confidence 689999999999999999999999999999998754 5999999999999999999999999875211123
Q ss_pred eEEEeecCC
Q 030465 157 LRLQFSRNP 165 (177)
Q Consensus 157 l~V~~a~~~ 165 (177)
|+|+.++..
T Consensus 86 i~v~~~~~~ 94 (115)
T 3beg_B 86 IRVKVDGPR 94 (115)
T ss_dssp CEEEECC--
T ss_pred EEeccCCCC
Confidence 788877654
No 146
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.77 E-value=3.1e-18 Score=126.15 Aligned_cols=81 Identities=26% Similarity=0.463 Sum_probs=75.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
+++|||+|||+++|+++|+++|++||.|.+++++.++ .+++++|||||+|.+.++|++|++.||+..+.+ +.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~---~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g-----~~ 73 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDK---ITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-----KT 73 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT---TTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT-----EE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC---CCCcceeEEEEEECCHHHHHHHHHHcCCCccCC-----ce
Confidence 6899999999999999999999999999999999886 578899999999999999999999999999966 58
Q ss_pred eEEEeecCC
Q 030465 157 LRLQFSRNP 165 (177)
Q Consensus 157 l~V~~a~~~ 165 (177)
|+|+|++..
T Consensus 74 l~v~~~~~~ 82 (167)
T 1fxl_A 74 IKVSYARPS 82 (167)
T ss_dssp CEEEECCCC
T ss_pred EEEEecCCC
Confidence 999999754
No 147
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.77 E-value=4e-18 Score=130.96 Aligned_cols=83 Identities=18% Similarity=0.359 Sum_probs=76.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|+++|++||.|..|+++.++ .+++++|||||+|.+.++|.+|++.||+..|.+ +.
T Consensus 125 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~---~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g-----~~ 196 (216)
T 2qfj_A 125 FNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDP---TTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGG-----QY 196 (216)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECT---TTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSS-----SB
T ss_pred CcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecC---CCCCcCceEEEEecCHHHHHHHHHHccCCEeCC-----cE
Confidence 6899999999999999999999999999999999886 578899999999999999999999999999966 58
Q ss_pred eEEEeecCCCC
Q 030465 157 LRLQFSRNPGP 167 (177)
Q Consensus 157 l~V~~a~~~~~ 167 (177)
|+|+|++.+..
T Consensus 197 i~V~~a~~~~~ 207 (216)
T 2qfj_A 197 LRVGKAVTPPM 207 (216)
T ss_dssp CEEEECSSCSS
T ss_pred EEEEEecCCCC
Confidence 99999987633
No 148
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.76 E-value=1.7e-18 Score=127.96 Aligned_cols=82 Identities=28% Similarity=0.446 Sum_probs=75.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
+++|||+|||+++|+++|+++|++||.|.+|+++.++ .+++++|||||+|.+.++|++|++.|++..+.+ ++
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g-----~~ 74 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDY---KTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRN-----KR 74 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEET---TTTEECSEEEEEESSHHHHHHHHHHHTTCEETT-----EE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeC---CCCccceEEEEEECCHHHHHHHHHhcCCCEeCC-----cE
Confidence 6899999999999999999999999999999998876 578899999999999999999999999999966 58
Q ss_pred eEEEeecCCC
Q 030465 157 LRLQFSRNPG 166 (177)
Q Consensus 157 l~V~~a~~~~ 166 (177)
|+|+|++...
T Consensus 75 l~v~~~~~~~ 84 (168)
T 1b7f_A 75 LKVSYARPGG 84 (168)
T ss_dssp CEEEECCCCS
T ss_pred EEEEecCCCc
Confidence 9999997653
No 149
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-18 Score=123.47 Aligned_cols=81 Identities=16% Similarity=0.206 Sum_probs=69.0
Q ss_pred CCCeEEE--cCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCee-CCCCC
Q 030465 76 ASSTLYV--EGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRM-DEDDP 152 (177)
Q Consensus 76 ~~~tLfV--~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l-~~~~~ 152 (177)
++++||| +||++++|+++|+++|++||.|.+|.|+.+ ||||||+|.+.++|++|++.|||..| ..-.
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~---------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg- 93 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN---------KPYSFARYRTTEESKRAYVTLNGKEVVDDLG- 93 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT---------CSCEEEEESSHHHHHHHHHHTTTCEEECTTS-
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---------CCEEEEEECCHHHHHHHHHHhCCCEEccccC-
Confidence 4789999 779999999999999999999999887543 47999999999999999999999988 2111
Q ss_pred CCcceEEEeecCCC
Q 030465 153 DSKFLRLQFSRNPG 166 (177)
Q Consensus 153 ~~r~l~V~~a~~~~ 166 (177)
.+++|.|.|++..+
T Consensus 94 ~g~~l~v~~a~~~p 107 (114)
T 2cq2_A 94 QKITLYLNFVEKVQ 107 (114)
T ss_dssp CEEECEEEEESCCC
T ss_pred CCcEEEEEecccCc
Confidence 24689999998653
No 150
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.76 E-value=1.8e-18 Score=116.96 Aligned_cols=75 Identities=17% Similarity=0.193 Sum_probs=62.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++||++|+++|++||.|.+|+|+.+ +||||||+|++.++|+ .+++..+.. .++.
T Consensus 11 ~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~--------srGfaFV~F~~~~~A~----~~~~~~~~~---~g~~ 75 (89)
T 3d2w_A 11 GSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--------FRAFAFVTFADDKVAQ----SLCGEDLII---KGIS 75 (89)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS--------CCSEEEEEESCHHHHH----HHTTCEEEE---TTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC--------CCCEEEEEECCHHHHH----HHcCCCccc---CCEE
Confidence 689999999999999999999999999999998764 5689999999999988 367776654 3468
Q ss_pred eEEEeecCCC
Q 030465 157 LRLQFSRNPG 166 (177)
Q Consensus 157 l~V~~a~~~~ 166 (177)
|+|.+++++.
T Consensus 76 v~v~~a~~k~ 85 (89)
T 3d2w_A 76 VHISNAEPKH 85 (89)
T ss_dssp EEEEECC---
T ss_pred EEEEEcCCCC
Confidence 9999997654
No 151
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.76 E-value=1.8e-19 Score=117.32 Aligned_cols=75 Identities=13% Similarity=0.320 Sum_probs=68.0
Q ss_pred eEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcceE
Q 030465 79 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLR 158 (177)
Q Consensus 79 tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~l~ 158 (177)
+|||+|||+++|+++|+++|++||.|.+|+++.++ .+++++|||||+|.+.++|++|++. ++..+.+ +.|+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g-----~~l~ 71 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDN---KTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGL-----SKCE 71 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSC---CCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTT-----BCCC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC---CCCCcCCEEEEEECCHHHHHHHHHh-CCCeECC-----EEEE
Confidence 69999999999999999999999999999998876 5688999999999999999999984 8888866 4788
Q ss_pred EEee
Q 030465 159 LQFS 162 (177)
Q Consensus 159 V~~a 162 (177)
|++|
T Consensus 72 v~~a 75 (75)
T 1iqt_A 72 IKVA 75 (75)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8875
No 152
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.76 E-value=1.3e-18 Score=125.19 Aligned_cols=77 Identities=22% Similarity=0.354 Sum_probs=68.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEE--EEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCC
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYK--EVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 154 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~--~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~ 154 (177)
.++|||+|||+++|+++|+++|++| .|. +|+|+.++ . |+++|||||+|.+.++|++||+. ++..|.+
T Consensus 42 ~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~---~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~g----- 110 (126)
T 2hgm_A 42 DGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDP---E-GKITGEAFVQFASQELAEKALGK-HKERIGH----- 110 (126)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCS---S-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTT-----
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECC---C-CCCceEEEEEECCHHHHHHHHHH-CCCEECC-----
Confidence 6899999999999999999999999 677 89998886 3 88999999999999999999975 7788855
Q ss_pred cceEEEeecC
Q 030465 155 KFLRLQFSRN 164 (177)
Q Consensus 155 r~l~V~~a~~ 164 (177)
|.|+|.++..
T Consensus 111 R~I~V~~a~~ 120 (126)
T 2hgm_A 111 RYIEVFKSSQ 120 (126)
T ss_dssp BCCCCEEECH
T ss_pred EEEEEEECCH
Confidence 5799988743
No 153
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.76 E-value=6.1e-18 Score=128.29 Aligned_cols=86 Identities=21% Similarity=0.337 Sum_probs=78.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCC
Q 030465 75 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 154 (177)
Q Consensus 75 ~~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~ 154 (177)
.+.++|||+|||+++|+++|+++|++||.|.+|++..++ .++.++|||||+|.+.++|++|++.||+..|.+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----- 183 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS---ATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGD----- 183 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECT---TTCSEEEEEEEEESSSSHHHHHHHHHTTCEETT-----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecC---CCCCcceEEEEEECCHHHHHHHHHHcCCCEECC-----
Confidence 347999999999999999999999999999999999886 578899999999999999999999999999966
Q ss_pred cceEEEeecCCCCC
Q 030465 155 KFLRLQFSRNPGPR 168 (177)
Q Consensus 155 r~l~V~~a~~~~~r 168 (177)
+.|+|+|++.+.++
T Consensus 184 ~~l~v~~a~~~~~~ 197 (198)
T 2yh0_A 184 KKLLVQRASVGAKN 197 (198)
T ss_dssp EECEEEESCCCCCC
T ss_pred EEEEEEECCCCCCC
Confidence 58999999776543
No 154
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=2.6e-18 Score=116.95 Aligned_cols=77 Identities=12% Similarity=0.236 Sum_probs=68.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEE-EeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVR-LVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~-l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+++|||+|||+++|+++|+++|++||.|.+|+ ++.++ .+ +.|||+|.+.++|++|++.||+..|.+ +
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~---~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g-----~ 82 (96)
T 2e44_A 15 IRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDS---ET----AVVNVTYSSKDQARQALDKLNGFQLEN-----F 82 (96)
T ss_dssp CCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSS---SS----EEEEEEESSHHHHHHHHHHHTTCBCSS-----C
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CC----CEEEEEECCHHHHHHHHHHhCCCEECC-----c
Confidence 68999999999999999999999999999995 77665 22 349999999999999999999999976 5
Q ss_pred ceEEEeecCC
Q 030465 156 FLRLQFSRNP 165 (177)
Q Consensus 156 ~l~V~~a~~~ 165 (177)
+|+|+|++.+
T Consensus 83 ~l~V~~a~~~ 92 (96)
T 2e44_A 83 TLKVAYIPDE 92 (96)
T ss_dssp BCEEEECCCC
T ss_pred EEEEEEcCcc
Confidence 8999999765
No 155
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.76 E-value=5.8e-19 Score=121.64 Aligned_cols=78 Identities=21% Similarity=0.296 Sum_probs=71.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|+++|++||.|.+|+|+.++ +++++|||||+|.+.++|++|++ ++..+.+ +.
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~----~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g-----~~ 77 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR----TGVSKGYGFVSFYNDVDVQKIVE--SQINFHG-----KK 77 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT----TSCEEEEEEEEESSCCCHHHHTT--CCCEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC----CCCccceEEEEECCHHHHHHHHh--CCCeECC-----EE
Confidence 6899999999999999999999999999999999885 68899999999999999999998 9999966 57
Q ss_pred eEEEeecCC
Q 030465 157 LRLQFSRNP 165 (177)
Q Consensus 157 l~V~~a~~~ 165 (177)
|.|.++..+
T Consensus 78 l~v~~a~~~ 86 (102)
T 2xs2_A 78 LKLGPAIRK 86 (102)
T ss_dssp CEEEEEEEC
T ss_pred EEEEECCcC
Confidence 999998754
No 156
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=5.2e-18 Score=115.34 Aligned_cols=78 Identities=17% Similarity=0.282 Sum_probs=67.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|+++|++||.|.+| +.++ .+++ ||||+|.+.++|++|++ ||+..|.+ +.
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~---~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g-----~~ 73 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDK---DKGV---FAIVEMGDVGAREAVLS-QSQHSLGG-----HR 73 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECS---SSCC---EEEEEESSHHHHHHHHT-CSCCEETT-----EE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcC---CCCc---EEEEEECCHHHHHHHHh-cCCeEECC-----EE
Confidence 6899999999999999999999999999987 3343 2343 99999999999999999 99999976 58
Q ss_pred eEEEeecCCCCC
Q 030465 157 LRLQFSRNPGPR 168 (177)
Q Consensus 157 l~V~~a~~~~~r 168 (177)
|+|+++..+...
T Consensus 74 l~V~~a~~~~~~ 85 (94)
T 2e5g_A 74 LRVRPREQKEFQ 85 (94)
T ss_dssp CCCBCSCCSCCC
T ss_pred EEEEECCcCCCC
Confidence 999998765433
No 157
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.75 E-value=5.8e-18 Score=113.81 Aligned_cols=74 Identities=26% Similarity=0.323 Sum_probs=67.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
+++|||+|||+++|+++|+++|++| .|.++++. +++|||||+|.+.++|++|++.||+..+.+ ++
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g-----~~ 69 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRG-----KD 69 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---------GGGTEEEECCSCHHHHHHHHHHHTTEEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---------CCCcEEEEEECCHHHHHHHHHHhCCCeECC-----cE
Confidence 6899999999999999999999999 99999884 245799999999999999999999999966 58
Q ss_pred eEEEeecCC
Q 030465 157 LRLQFSRNP 165 (177)
Q Consensus 157 l~V~~a~~~ 165 (177)
|+|+|++..
T Consensus 70 l~V~~a~~~ 78 (88)
T 1wg1_A 70 LIVQLQPTD 78 (88)
T ss_dssp EEEEECCCC
T ss_pred EEEEEcCCC
Confidence 999999654
No 158
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.75 E-value=1.5e-17 Score=122.92 Aligned_cols=80 Identities=24% Similarity=0.370 Sum_probs=74.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|+++|++||.|..++++.++ .+++++|||||+|.+.++|.+|++.||+..+.+ ..++
T Consensus 89 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~~~ 162 (168)
T 1b7f_A 89 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDK---LTGRPRGVAFVRYNKREEAQEAISALNNVIPEG---GSQP 162 (168)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECT---TTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT---CSSC
T ss_pred CCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcC---CCCCcceEEEEEECCHHHHHHHHHHhcCCEecC---CCeE
Confidence 6899999999999999999999999999999999886 578899999999999999999999999999977 2368
Q ss_pred eEEEee
Q 030465 157 LRLQFS 162 (177)
Q Consensus 157 l~V~~a 162 (177)
|+|+||
T Consensus 163 l~V~~A 168 (168)
T 1b7f_A 163 LSVRLA 168 (168)
T ss_dssp CEEEEC
T ss_pred EEEEeC
Confidence 999986
No 159
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.8e-18 Score=115.23 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=65.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
+++|||+|||+++|+++|+++|++||.|.+|+|+.+ ++|||||+|.+.++|++ +++..+.. .+++
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--------~~g~afV~f~~~~~a~~----~~~~~~~~---~g~~ 69 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--------FRAFAFVTFADDQIAQS----LCGEDLII---KGIS 69 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--------CCSCCEEECSCHHHHHH----TTTCEEEE---TTEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC--------CCCEEEEEECCHHHHHH----HhcCCcee---CCEE
Confidence 699999999999999999999999999999998754 45799999999999975 45555533 3468
Q ss_pred eEEEeecCCCCCCC
Q 030465 157 LRLQFSRNPGPRSV 170 (177)
Q Consensus 157 l~V~~a~~~~~r~~ 170 (177)
|+|++++++..+..
T Consensus 70 l~v~~a~~~~~~~~ 83 (88)
T 1wf0_A 70 VHISNAEPKHNSNS 83 (88)
T ss_dssp EEEECCCCCCCCCS
T ss_pred EEEEecCCCCCCCC
Confidence 99999987655543
No 160
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.75 E-value=6.1e-18 Score=128.10 Aligned_cols=84 Identities=10% Similarity=0.222 Sum_probs=72.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|+++|++||.|..|+++.++ .+++++|||||+|.+.++|++|++. ++..|.+ +.
T Consensus 104 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G-----~~ 174 (196)
T 1l3k_A 104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR---GSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNG-----HN 174 (196)
T ss_dssp CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECT---TTCCEEEEEEEEESSHHHHHHHHHC-SCCEETT-----EE
T ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecC---CCCCccceEEEEECCHHHHHHHHHh-CCcEECC-----EE
Confidence 6899999999999999999999999999999999886 5788999999999999999999976 7999966 58
Q ss_pred eEEEeecCCCCCC
Q 030465 157 LRLQFSRNPGPRS 169 (177)
Q Consensus 157 l~V~~a~~~~~r~ 169 (177)
|+|.|+.++....
T Consensus 175 i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 175 CEVRKALSKQEMA 187 (196)
T ss_dssp CEEEECC------
T ss_pred EEEEecCChhHhc
Confidence 9999998764444
No 161
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.75 E-value=6.9e-18 Score=125.33 Aligned_cols=81 Identities=22% Similarity=0.316 Sum_probs=73.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|+++|++||.|.+++++.+. +++++|||||+|.+.++|++|++.|||..+.+. .+++
T Consensus 95 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~----~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g--~~~~ 168 (175)
T 3nmr_A 95 DRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP----DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEG--CSSP 168 (175)
T ss_dssp GSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT----TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTT--CSSC
T ss_pred CCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC----CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCC--CCCC
Confidence 6899999999999999999999999999999998885 588999999999999999999999999988753 2468
Q ss_pred eEEEeec
Q 030465 157 LRLQFSR 163 (177)
Q Consensus 157 l~V~~a~ 163 (177)
|+|+||.
T Consensus 169 l~V~~ad 175 (175)
T 3nmr_A 169 MVVKFAD 175 (175)
T ss_dssp CEEEECC
T ss_pred eEEEecC
Confidence 9999983
No 162
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.74 E-value=9.3e-18 Score=124.63 Aligned_cols=85 Identities=14% Similarity=0.274 Sum_probs=75.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCC--CcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCC
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGG--DPLILCFVDFENPACAATALSALQGYRMDEDDPDS 154 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g--~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~ 154 (177)
+++|||+|||+++|+++|+++|++||.|.+|+++.++ .++ +++|||||+|.+.++|++|++.||+..+... ..
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~--~~ 77 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDR---SQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPG--MH 77 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEC---SSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTT--CS
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecC---CCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccC--Cc
Confidence 6899999999999999999999999999999999886 444 7899999999999999999999999988754 34
Q ss_pred cceEEEeecCCC
Q 030465 155 KFLRLQFSRNPG 166 (177)
Q Consensus 155 r~l~V~~a~~~~ 166 (177)
+.+.+.++....
T Consensus 78 ~~~~~~~~~~~~ 89 (175)
T 3nmr_A 78 HPIQMKPADSEK 89 (175)
T ss_dssp SCCEEEECGGGC
T ss_pred cceEEccccccc
Confidence 679998886543
No 163
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.74 E-value=8.5e-18 Score=124.82 Aligned_cols=78 Identities=22% Similarity=0.363 Sum_probs=73.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|+++|++||.|..++++.++ .+++++|||||+|.+.++|++|++.||+..+.+ ++
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~---~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~~ 165 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS---ATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGD-----KK 165 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECT---TTCSEEEEEEEEESSTTHHHHHHHHHTTCEETT-----EE
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecC---CCCCcceEEEEEeCCHHHHHHHHHHcCCCEECC-----eE
Confidence 6899999999999999999999999999999999886 578899999999999999999999999999966 58
Q ss_pred eEEEee
Q 030465 157 LRLQFS 162 (177)
Q Consensus 157 l~V~~a 162 (177)
|+|+||
T Consensus 166 l~V~~A 171 (172)
T 2g4b_A 166 LLVQRA 171 (172)
T ss_dssp CEEEEC
T ss_pred EEEEeC
Confidence 999997
No 164
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.4e-18 Score=124.49 Aligned_cols=78 Identities=23% Similarity=0.293 Sum_probs=69.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCE----EEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCC
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGY----KEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 151 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i----~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~ 151 (177)
+..+|||+|||+++|+++|+++|++||.| ..|+|+.++ +|+++|||||+|.+.++|++||+. |+..|.+
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~----~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~g-- 94 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP----DGRPTGDAFVLFACEEYAQNALRK-HKDLLGK-- 94 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT----TSCEEEEEEECCSSHHHHHHHHTT-TTEESSS--
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC----CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCC--
Confidence 36899999999999999999999999875 688888874 688999999999999999999986 9888855
Q ss_pred CCCcceEEEeec
Q 030465 152 PDSKFLRLQFSR 163 (177)
Q Consensus 152 ~~~r~l~V~~a~ 163 (177)
|.|+|..+.
T Consensus 95 ---R~i~V~~a~ 103 (123)
T 2dha_A 95 ---RYIELFRST 103 (123)
T ss_dssp ---CEECCEEEC
T ss_pred ---eEEEEEECC
Confidence 578988874
No 165
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.74 E-value=5.9e-18 Score=131.02 Aligned_cols=76 Identities=18% Similarity=0.243 Sum_probs=69.8
Q ss_pred CCeEEEcCCC-CCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 77 SSTLYVEGLP-ADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 77 ~~tLfV~nLp-~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+++|||+||| +++|+++|+++|++||.|.+|+|+.++ +|||||+|.+.++|+.|++.|||..|.+ +
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~--------~g~afV~f~~~~~A~~Ai~~lng~~~~g-----~ 70 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK--------PGAAMVEMADGYAVDRAITHLNNNFMFG-----Q 70 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS--------TTCEEEEESSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC--------CCEEEEEECCHHHHHHHHHHhCCCEECC-----c
Confidence 7899999999 899999999999999999999997653 4799999999999999999999999976 5
Q ss_pred ceEEEeecCC
Q 030465 156 FLRLQFSRNP 165 (177)
Q Consensus 156 ~l~V~~a~~~ 165 (177)
+|+|+|++.+
T Consensus 71 ~l~v~~s~~~ 80 (205)
T 3tyt_A 71 KMNVCVSKQP 80 (205)
T ss_dssp ECEEEECSCS
T ss_pred eEEEEEccCC
Confidence 8999999754
No 166
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.74 E-value=2.7e-18 Score=133.04 Aligned_cols=79 Identities=15% Similarity=0.293 Sum_probs=72.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|+++|++||.|.+|+|+.++ +.++|||||+|.+.++|++|++.|||..|.+ ++
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~-----~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g-----~~ 172 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-----NGSKGYGFVHFETQEAAERAIEKMNGMLLND-----RK 172 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-----TEEEEEEEEEESSHHHHHHHHHHHTTCEETT-----EE
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC-----CCCceEEEEEeCCHHHHHHHHHHhCCCEECC-----EE
Confidence 5789999999999999999999999999999999875 3478999999999999999999999999966 58
Q ss_pred eEEEeecCC
Q 030465 157 LRLQFSRNP 165 (177)
Q Consensus 157 l~V~~a~~~ 165 (177)
|+|+||+.+
T Consensus 173 i~V~~a~~~ 181 (213)
T 4f02_A 173 VFVGRFKSR 181 (213)
T ss_dssp CEEEECCCH
T ss_pred EEEEEcCCC
Confidence 999999754
No 167
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.74 E-value=6.4e-18 Score=127.99 Aligned_cols=82 Identities=12% Similarity=0.216 Sum_probs=73.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCC
Q 030465 75 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 154 (177)
Q Consensus 75 ~~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~ 154 (177)
.+.++|||+|||+++|+++|+++|++||.|.+|+|+.++ .+++++|||||+|.+.++|++|++. ++..+.+
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~---~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g----- 81 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDP---NTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDG----- 81 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT---TTCCEEEEEEEEESSHHHHHHHHHT-CSCEETT-----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcC---CCCCccceEEEEeCCHHHHHHHHhc-CCCEECC-----
Confidence 347899999999999999999999999999999999886 5788999999999999999999976 8889866
Q ss_pred cceEEEeecCC
Q 030465 155 KFLRLQFSRNP 165 (177)
Q Consensus 155 r~l~V~~a~~~ 165 (177)
+.|+|.++...
T Consensus 82 ~~l~v~~~~~~ 92 (196)
T 1l3k_A 82 RVVEPKRAVSR 92 (196)
T ss_dssp EECEEEECCC-
T ss_pred EEeeeecccCc
Confidence 58999998654
No 168
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.73 E-value=1.4e-17 Score=118.80 Aligned_cols=78 Identities=26% Similarity=0.369 Sum_probs=68.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCC
Q 030465 75 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 154 (177)
Q Consensus 75 ~~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~ 154 (177)
.++++|||+|| ++|+++|+++|++||.|.+|++.. ++|||||+|.+.++|++|++.||+..|.+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~---------~kg~aFV~f~~~~~A~~Ai~~lng~~~~g----- 100 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP---------PRNCAFVTYEKMESADQAVAELNGTQVES----- 100 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET---------TTTEEEEECSSHHHHHHHHHHHTTCBCSS-----
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC---------CCCEEEEEECCHHHHHHHHHHhCCCEECC-----
Confidence 34799999996 799999999999999999999863 34799999999999999999999999966
Q ss_pred cceEEEeecCCCCC
Q 030465 155 KFLRLQFSRNPGPR 168 (177)
Q Consensus 155 r~l~V~~a~~~~~r 168 (177)
+.|+|+|++.+...
T Consensus 101 ~~l~V~~a~~~~~~ 114 (121)
T 2bz2_A 101 VQLKVNIARKQPML 114 (121)
T ss_dssp CBCEEEECCSSCC-
T ss_pred eEEEEEEeCCCCCC
Confidence 58999999876443
No 169
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.1e-17 Score=122.98 Aligned_cols=80 Identities=18% Similarity=0.346 Sum_probs=72.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcce
Q 030465 78 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 157 (177)
Q Consensus 78 ~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~l 157 (177)
++|||+|||+++|+++|+++|++||.|.+|+++.++ .++++|||||+|.+.++|++|++.||+..+.+ +.|
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~----~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g-----~~i 71 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK----NNKNVNYAFVEYHQSHDANIALQTLNGKQIEN-----NIV 71 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC----C-CCEEEEEEEESSHHHHHHHHHHHTTCEETT-----EEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC----CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCC-----Cee
Confidence 589999999999999999999999999999999886 47789999999999999999999999999966 589
Q ss_pred EEEeecCCC
Q 030465 158 RLQFSRNPG 166 (177)
Q Consensus 158 ~V~~a~~~~ 166 (177)
+|+++....
T Consensus 72 ~v~~~~~~~ 80 (166)
T 3md3_A 72 KINWAFQSQ 80 (166)
T ss_dssp EEEECCCCC
T ss_pred EEEEcCCCC
Confidence 999997653
No 170
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.73 E-value=2.5e-17 Score=121.28 Aligned_cols=80 Identities=23% Similarity=0.445 Sum_probs=73.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|+++|++||.|.+++++.++ .++.++|||||+|.+.++|++|++.|||..+.+.. .+
T Consensus 88 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~---~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~---~~ 161 (167)
T 1fxl_A 88 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ---VTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT---EP 161 (167)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT---TTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCS---SC
T ss_pred CCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecC---CCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCc---cc
Confidence 6899999999999999999999999999999998876 56889999999999999999999999999998742 36
Q ss_pred eEEEee
Q 030465 157 LRLQFS 162 (177)
Q Consensus 157 l~V~~a 162 (177)
|+|+||
T Consensus 162 i~v~~A 167 (167)
T 1fxl_A 162 ITVKFA 167 (167)
T ss_dssp CEEEEC
T ss_pred eEEEeC
Confidence 999986
No 171
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.6e-17 Score=113.07 Aligned_cols=71 Identities=18% Similarity=0.237 Sum_probs=62.9
Q ss_pred CCe-EEEcCCCCCCCHHH----HHHhhCCC-CCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCC
Q 030465 77 SST-LYVEGLPADSTKRE----VAHIFRPF-VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 150 (177)
Q Consensus 77 ~~t-LfV~nLp~~~te~~----L~~lF~~~-G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~ 150 (177)
+.| |||+|||+.+++++ |+++|++| |.|.+| ++ |||||+|.+.++|++|++.|||..|.+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----------tg---G~AfV~F~~~esA~~A~~~l~G~~l~g- 73 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----------TG---CSAILRFINQDSAERAQKRMENEDVFG- 73 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----------CT---TCEEEEESSHHHHHHHHHHHTTCCSSS-
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----------ec---CEEEEEECCHHHHHHHHHHhcCCccCC-
Confidence 666 99999999999998 55899999 599887 12 699999999999999999999999977
Q ss_pred CCCCcceEEEeecCC
Q 030465 151 DPDSKFLRLQFSRNP 165 (177)
Q Consensus 151 ~~~~r~l~V~~a~~~ 165 (177)
|+|+|+||+..
T Consensus 74 ----r~i~v~~A~~~ 84 (96)
T 2diu_A 74 ----NRIIVSFTPKN 84 (96)
T ss_dssp ----SCCEEESSCCS
T ss_pred ----ceEEEEecCCC
Confidence 58999999765
No 172
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.72 E-value=8.2e-18 Score=124.35 Aligned_cols=80 Identities=11% Similarity=0.281 Sum_probs=73.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|+++|++||.|.+++++.++ .++.++|||||+|.+.++|++|++ +++..+.+ ++
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~---~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g-----~~ 157 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDK---DTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKD-----RK 157 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSS---SSSTTSEEEEEEESSHHHHHHHHH-CSEECSSS-----SC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcC---CCCccceEEEEEECCHHHHHHHHh-CCCEEeCC-----eE
Confidence 6799999999999999999999999999999998886 578899999999999999999997 89999966 58
Q ss_pred eEEEeecCC
Q 030465 157 LRLQFSRNP 165 (177)
Q Consensus 157 l~V~~a~~~ 165 (177)
|+|+||+++
T Consensus 158 i~V~~a~pk 166 (167)
T 2cjk_A 158 IEIKRAEPR 166 (167)
T ss_dssp EEEEECCCC
T ss_pred EEEeecCCC
Confidence 999999754
No 173
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.72 E-value=2.4e-17 Score=126.58 Aligned_cols=81 Identities=19% Similarity=0.278 Sum_probs=72.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|+++|++||.|.+|+|+.++ .+++++|||||+|.+.++|++|++.||+..|.+ +.
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~---~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g-----~~ 99 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDS---VTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGG-----RN 99 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC----CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC------CC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecC---CCCccCceEEEEeCCHHHHHHHHHHccCCeeCC-----ee
Confidence 6899999999999999999999999999999998876 568899999999999999999999999999976 47
Q ss_pred eEEEeecCC
Q 030465 157 LRLQFSRNP 165 (177)
Q Consensus 157 l~V~~a~~~ 165 (177)
|+|.++...
T Consensus 100 l~v~~~~~~ 108 (216)
T 2qfj_A 100 IKVGRPSNI 108 (216)
T ss_dssp CEEECCSCC
T ss_pred EEEecCCCc
Confidence 999988654
No 174
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=9.1e-18 Score=118.22 Aligned_cols=70 Identities=24% Similarity=0.300 Sum_probs=60.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHh---CCCee
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSAL---QGYRM 147 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l---~g~~l 147 (177)
.++|||+|||+++|+++|+++|++||.|. +.++.++....+|+++|||||+|.+.++|++|++.| +|..|
T Consensus 8 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~ 80 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLY 80 (114)
T ss_dssp CCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEE
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEE
Confidence 68999999999999999999999999999 877777632223789999999999999999999998 55543
No 175
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.1e-17 Score=120.06 Aligned_cols=79 Identities=9% Similarity=0.128 Sum_probs=70.4
Q ss_pred CeEEEcCC----CCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecC----HHH----HHHHHH--HhC
Q 030465 78 STLYVEGL----PADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFEN----PAC----AATALS--ALQ 143 (177)
Q Consensus 78 ~tLfV~nL----p~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~----~~~----A~~Ai~--~l~ 143 (177)
++|||+|| |+.+++++|+++|++||.|.+|+++.|+ .+|.++|||||+|.| +++ |.+|++ .||
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp---~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~ln 79 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDP---NSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESS 79 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECT---TTCCEEEEEEEECC------CCHHHHHHHHHHHTTTT
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecC---CCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhc
Confidence 68999999 9999999999999999999999999999 889999999999996 433 788888 789
Q ss_pred CCeeCCCCCCCcceEEEeecC
Q 030465 144 GYRMDEDDPDSKFLRLQFSRN 164 (177)
Q Consensus 144 g~~l~~~~~~~r~l~V~~a~~ 164 (177)
+..|.+ |+|+|++.++
T Consensus 80 g~~I~G-----r~irV~ln~~ 95 (136)
T 2j8a_A 80 GCFIMG-----FKFEVILNKH 95 (136)
T ss_dssp CEEETT-----EEEEEEECCT
T ss_pred CCeecC-----cEEEEEECcc
Confidence 999966 6899998754
No 176
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.70 E-value=1.7e-17 Score=110.70 Aligned_cols=69 Identities=19% Similarity=0.331 Sum_probs=63.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCC----C-------CEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCC
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPF----V-------GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY 145 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~----G-------~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~ 145 (177)
.++|||+|||+++|+++|+++|++| | .|.++++..+ +|||||+|.+.++|++|+ .||+.
T Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~---------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 6 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS---------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC---------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 6899999999999999999999999 8 8999988754 379999999999999999 99999
Q ss_pred eeCCCCCCCcceEEE
Q 030465 146 RMDEDDPDSKFLRLQ 160 (177)
Q Consensus 146 ~l~~~~~~~r~l~V~ 160 (177)
.+.+ +.|+|+
T Consensus 76 ~~~g-----~~l~V~ 85 (87)
T 2hzc_A 76 IFQG-----QSLKIR 85 (87)
T ss_dssp EETT-----EECEEE
T ss_pred EECC-----eEEEEe
Confidence 9976 478887
No 177
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.69 E-value=1.3e-16 Score=127.71 Aligned_cols=79 Identities=24% Similarity=0.386 Sum_probs=71.7
Q ss_pred CCeEEEcCCCCCCCHHHHH----HhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCC
Q 030465 77 SSTLYVEGLPADSTKREVA----HIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 152 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~----~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~ 152 (177)
+++|||+|||+++|+++|+ ++|++||.|.+|+++. +++++|||||+|.+.++|++|++.||+..|.+
T Consensus 9 ~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--- 79 (282)
T 3pgw_A 9 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR------SLKMRGQAFVIFKEVSSATNALRSMQGFPFYD--- 79 (282)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC------CCCcceEEEEEECCHHHHHHHHHHhcCCeeCC---
Confidence 7999999999999999977 8999999999998864 36788999999999999999999999999976
Q ss_pred CCcceEEEeecCCC
Q 030465 153 DSKFLRLQFSRNPG 166 (177)
Q Consensus 153 ~~r~l~V~~a~~~~ 166 (177)
+.|+|+|++...
T Consensus 80 --~~l~v~~a~~~~ 91 (282)
T 3pgw_A 80 --KPMRIQYAKTDS 91 (282)
T ss_pred --cEEEEEEeccCc
Confidence 489999997653
No 178
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.69 E-value=6.4e-16 Score=123.75 Aligned_cols=76 Identities=30% Similarity=0.633 Sum_probs=69.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
++++|||+|||+++|+++|+++|++||.|.+|+|+.++ +|||||+|.+.++|++|++.|||..|.. ++
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~~----g~ 273 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR--------HDIAFVEFDNEVQAGAARDALQGFKITQ----NN 273 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC--------CcEEEEEeCCHHHHHHHHHHcCCcEeCC----CC
Confidence 37899999999999999999999999999999998654 3699999999999999999999999972 25
Q ss_pred ceEEEeec
Q 030465 156 FLRLQFSR 163 (177)
Q Consensus 156 ~l~V~~a~ 163 (177)
.|+|+|++
T Consensus 274 ~l~v~~ak 281 (282)
T 3pgw_A 274 AMKISFAK 281 (282)
T ss_pred EEEEEEec
Confidence 89999996
No 179
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.69 E-value=4.1e-17 Score=126.25 Aligned_cols=80 Identities=15% Similarity=0.188 Sum_probs=70.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCE--EEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCC
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGY--KEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 154 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i--~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~ 154 (177)
+++|||+|||+++|+++|+++|++||.| .+++++.++ +..+|||||+|.+.++|.+||..||++.|.+.. ..
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-----~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~-~~ 196 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-----SERSSSGLLEWDSKSDALETLGFLNHYQMKNPN-GP 196 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-----SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSS-SS
T ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-----CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCC-CC
Confidence 7899999999999999999999999999 889988764 445689999999999999999999999998863 33
Q ss_pred cceEEEee
Q 030465 155 KFLRLQFS 162 (177)
Q Consensus 155 r~l~V~~a 162 (177)
.++.|.|+
T Consensus 197 ~p~~vk~~ 204 (205)
T 3tyt_A 197 YPYTLKLC 204 (205)
T ss_dssp SCEECEEE
T ss_pred cceEEEec
Confidence 57888775
No 180
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.69 E-value=2.5e-16 Score=109.78 Aligned_cols=81 Identities=12% Similarity=0.200 Sum_probs=69.9
Q ss_pred CCCeEEEcCCCC-----CCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCC
Q 030465 76 ASSTLYVEGLPA-----DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 150 (177)
Q Consensus 76 ~~~tLfV~nLp~-----~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~ 150 (177)
++++|+|.||.. +-++++|+++|++||.|.+|+|+.++. .+++++||+||+|.+.++|++|++.|||..+.+
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~--~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G- 83 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPG--APDDEAVRIFLEFERVESAIKAVVDLNGRYFGG- 83 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSS--CCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT-
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCC--CCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC-
Confidence 479999999963 347899999999999999999988751 236789999999999999999999999999965
Q ss_pred CCCCcceEEEeec
Q 030465 151 DPDSKFLRLQFSR 163 (177)
Q Consensus 151 ~~~~r~l~V~~a~ 163 (177)
|.|+|+|+.
T Consensus 84 ----r~i~v~~a~ 92 (105)
T 2pe8_A 84 ----RVVKACFYN 92 (105)
T ss_dssp ----EECEEEECC
T ss_pred ----cEEEEEEcC
Confidence 689999985
No 181
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.68 E-value=1.1e-16 Score=119.27 Aligned_cols=77 Identities=22% Similarity=0.375 Sum_probs=68.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 76 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 76 ~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+.++|||+|||+++|+++|+++|++||.|..+ . .++.++|||||+|.+.++|.+|++.|||..|.+ +
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~----~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 164 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV----S----QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG-----R 164 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----C----SSSSCCSEEEEECSSHHHHHHHHHHHTEEEETT-----E
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----c----CCCCCceEEEEEECCHHHHHHHHHHhCCCEECC-----e
Confidence 36899999999999999999999999987755 2 357889999999999999999999999999966 5
Q ss_pred ceEEEeecCC
Q 030465 156 FLRLQFSRNP 165 (177)
Q Consensus 156 ~l~V~~a~~~ 165 (177)
.|+|+|++.+
T Consensus 165 ~i~v~~a~~k 174 (175)
T 1fje_B 165 SVSLYYTGEK 174 (175)
T ss_dssp EEEEEECSSC
T ss_pred EEEEEecCCC
Confidence 8999999754
No 182
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.68 E-value=8.1e-17 Score=125.95 Aligned_cols=77 Identities=21% Similarity=0.330 Sum_probs=70.6
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCC
Q 030465 76 ASSTLYVEGLPA-DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 154 (177)
Q Consensus 76 ~~~tLfV~nLp~-~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~ 154 (177)
++++|||+|||+ ++|+++|+++|++||.|.+|+|+.++ +|||||+|.+.++|++|++.||+..|.+
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~--------~g~afV~F~~~~~A~~Ai~~l~g~~~~g----- 99 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--------KENALVQMADGNQAQLAMSHLNGHKLHG----- 99 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT--------SCCEEEEESCHHHHHHHHHHHTTCBCSS-----
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC--------CCEEEEEECCHHHHHHHHHHhCCCeECC-----
Confidence 379999999999 99999999999999999999998764 4699999999999999999999999966
Q ss_pred cceEEEeecCC
Q 030465 155 KFLRLQFSRNP 165 (177)
Q Consensus 155 r~l~V~~a~~~ 165 (177)
+.|+|+|++..
T Consensus 100 ~~l~v~~a~~~ 110 (229)
T 2adc_A 100 KPIRITLSKHQ 110 (229)
T ss_dssp SBCEEECCSCC
T ss_pred eEEEEEEecCc
Confidence 48999999754
No 183
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.68 E-value=8.6e-17 Score=127.29 Aligned_cols=80 Identities=20% Similarity=0.274 Sum_probs=67.9
Q ss_pred CCeEEEcCCCCCC---------CHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCee
Q 030465 77 SSTLYVEGLPADS---------TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRM 147 (177)
Q Consensus 77 ~~tLfV~nLp~~~---------te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l 147 (177)
+++|||+||++++ +|++|+++|++||.|.+|+|+..+ |||||+|.+.++|+.|++.|++..|
T Consensus 134 ~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~k---------G~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 134 NKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESK---------NCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGG---------TEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCC---------CEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 7999999999998 799999999999999999998653 7999999999999999999999999
Q ss_pred CCC--C-----CCCcceEEEeecCC
Q 030465 148 DED--D-----PDSKFLRLQFSRNP 165 (177)
Q Consensus 148 ~~~--~-----~~~r~l~V~~a~~~ 165 (177)
... + ..++.|.|.||+..
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC--
T ss_pred eccccccccccCCCCEEEEEEccCC
Confidence 210 0 02358999999764
No 184
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.67 E-value=8.6e-17 Score=118.80 Aligned_cols=78 Identities=17% Similarity=0.324 Sum_probs=68.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
+++|||+|||+++|+++|+++|++||.|.+|+++.++ .+++++|||||+|.+.++|++|++. +..+.+ +.
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g-----~~ 72 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDP---ATGRSRGFGFLSFEKPSSVDEVVKT--QHILDG-----KV 72 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCT---TTSSCCSCEEEEESSTHHHHHHHHS--CCEETT-----EE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECC---CCCCccceEEEEEccHHHHHHHHhc--ccccCC-----eE
Confidence 6899999999999999999999999999999998886 5788999999999999999999984 556754 46
Q ss_pred eEEEeecC
Q 030465 157 LRLQFSRN 164 (177)
Q Consensus 157 l~V~~a~~ 164 (177)
|.|.++..
T Consensus 73 i~v~~~~~ 80 (167)
T 2cjk_A 73 IDPKRAIP 80 (167)
T ss_dssp CCCEECCC
T ss_pred cccccccc
Confidence 88887753
No 185
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.66 E-value=2.9e-16 Score=120.46 Aligned_cols=79 Identities=15% Similarity=0.182 Sum_probs=70.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|+++|++||.|.+|+|+.+. +++++|||||+|++.++|++|++.++ ..+.+ +.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~----~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~G-----r~ 178 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL----HKAFKGSIFVVFDSIESAKKFVETPG-QKYKE-----TD 178 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT----TCCEEEEEEEEESSHHHHHHHHHCTT-CEETT-----EE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC----CCCcccEEEEEECCHHHHHHHHHhCC-CeECC-----EE
Confidence 5899999999999999999999999999999999875 47899999999999999999997665 57855 58
Q ss_pred eEEEeecCC
Q 030465 157 LRLQFSRNP 165 (177)
Q Consensus 157 l~V~~a~~~ 165 (177)
|+|.+++..
T Consensus 179 l~V~~~~~y 187 (193)
T 2voo_A 179 LLILFKDDY 187 (193)
T ss_dssp CEEEETTTC
T ss_pred EEEEEhHHH
Confidence 999998654
No 186
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.66 E-value=3e-16 Score=125.76 Aligned_cols=82 Identities=18% Similarity=0.264 Sum_probs=75.3
Q ss_pred CCeEEEcCCCCCC-CHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 77 SSTLYVEGLPADS-TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 77 ~~tLfV~nLp~~~-te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
.++|||+|||+++ |+++|+++|+.||.|.+++|+.+. +|+++|||||+|.+.++|.+|++.|||..|.+ +
T Consensus 184 ~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~----~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 254 (284)
T 3smz_A 184 SRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ----DGQLKGFAVLEYETAEMAEEAQQQADGLSLGG-----S 254 (284)
T ss_dssp CSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS----SCCEEEEEEEECSSHHHHHHHHHHHTTCEETT-----E
T ss_pred ccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC----CCCcccEEEEEeCCHHHHHHHHHHhCCCccCC-----e
Confidence 7899999999995 999999999999999999998875 68899999999999999999999999999966 5
Q ss_pred ceEEEeecCCCC
Q 030465 156 FLRLQFSRNPGP 167 (177)
Q Consensus 156 ~l~V~~a~~~~~ 167 (177)
+|+|+|++.+..
T Consensus 255 ~l~v~~a~~~~~ 266 (284)
T 3smz_A 255 HLRVSFCAPGPP 266 (284)
T ss_dssp ECEEEECCSSSC
T ss_pred EEEEEEecCCCc
Confidence 899999977644
No 187
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.5e-15 Score=106.53 Aligned_cols=79 Identities=13% Similarity=0.174 Sum_probs=66.4
Q ss_pred CCCeEEEcCCCCCC-----------CHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCC
Q 030465 76 ASSTLYVEGLPADS-----------TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQG 144 (177)
Q Consensus 76 ~~~tLfV~nLp~~~-----------te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g 144 (177)
++++|+|.||.... ++++|+++|++||.|.+|.| .++ .++|||||+|.+.++|++|++.|||
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~------~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR------HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT------CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC------CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 37999999994432 26899999999999999965 443 2678999999999999999999999
Q ss_pred CeeCCCCCCCcceEEEeecCCC
Q 030465 145 YRMDEDDPDSKFLRLQFSRNPG 166 (177)
Q Consensus 145 ~~l~~~~~~~r~l~V~~a~~~~ 166 (177)
..|.+ |+|+|+|+..+.
T Consensus 87 ~~~~g-----r~l~v~~a~~~~ 103 (112)
T 2dit_A 87 RWFGG-----RQITAQAWDGTT 103 (112)
T ss_dssp CEETT-----EECEEEECCSCC
T ss_pred CEECC-----cEEEEEEeCCCC
Confidence 99965 589999997643
No 188
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.64 E-value=9.7e-16 Score=116.58 Aligned_cols=77 Identities=21% Similarity=0.344 Sum_probs=69.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCC-CEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFV-GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G-~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+++|||+|||+++|+++|+++|++|| .|.+|+++.+. +|||||+|.+.++|++|++.|||..+.+ ++
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~~----g~ 187 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD--------RKMALIQMGSVEEAVQALIDLHNHDLGE----NH 187 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT--------SSCEEEECSSHHHHHHHHHHHTSSCCSS----CC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC--------CcEEEEEeCCHHHHHHHHHHhcCCccCC----CC
Confidence 79999999999999999999999999 99999987642 4699999999999999999999999961 35
Q ss_pred ceEEEeecCC
Q 030465 156 FLRLQFSRNP 165 (177)
Q Consensus 156 ~l~V~~a~~~ 165 (177)
+|+|+|++++
T Consensus 188 ~l~v~~a~~~ 197 (198)
T 1qm9_A 188 HLRVSFSKST 197 (198)
T ss_dssp SCCEEEECCC
T ss_pred eEEEEeeccc
Confidence 8999999764
No 189
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.64 E-value=3.1e-16 Score=126.19 Aligned_cols=82 Identities=12% Similarity=0.212 Sum_probs=72.8
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCC
Q 030465 76 ASSTLYVEGLPAD-STKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 154 (177)
Q Consensus 76 ~~~tLfV~nLp~~-~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~ 154 (177)
+.++|||+|||++ +|+++|+++|++||.|..|+|+.+.. .++.++|||||+|.+.++|.+|+ .|||..|.+
T Consensus 209 ~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~--~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g----- 280 (292)
T 2ghp_A 209 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQK--EHSFNNCCAFMVFENKDSAERAL-QMNRSLLGN----- 280 (292)
T ss_dssp TTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC-----CCCEEEEEEESSHHHHHHHG-GGTTEEETT-----
T ss_pred CCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCC--cCCCCceEEEEEeCCHHHHHHHH-HhcCCEECC-----
Confidence 3789999999999 99999999999999999999988751 13889999999999999999999 999999966
Q ss_pred cceEEEeecCC
Q 030465 155 KFLRLQFSRNP 165 (177)
Q Consensus 155 r~l~V~~a~~~ 165 (177)
++|+|+|++++
T Consensus 281 ~~i~V~~a~~k 291 (292)
T 2ghp_A 281 REISVSLADKK 291 (292)
T ss_dssp EEEEEEECCCC
T ss_pred cEEEEEEecCC
Confidence 58999999765
No 190
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.64 E-value=8.5e-16 Score=120.11 Aligned_cols=77 Identities=21% Similarity=0.344 Sum_probs=69.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCC-CEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFV-GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G-~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+++|||+|||+++|+++|+++|++|| .|.+|+++.+. +|||||+|.+.++|++|++.|||..+.. ++
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~~----g~ 218 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD--------RKMALIQMGSVEEAVQALIDLHNHDLGE----NH 218 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS--------TTCEEEEESSHHHHHHHHHHHTTCBSSS----SC
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC--------CcEEEEEECCHHHHHHHHHHHCCCccCC----CC
Confidence 79999999999999999999999999 99999996632 3699999999999999999999999961 35
Q ss_pred ceEEEeecCC
Q 030465 156 FLRLQFSRNP 165 (177)
Q Consensus 156 ~l~V~~a~~~ 165 (177)
+|+|+|++++
T Consensus 219 ~l~v~~a~~~ 228 (229)
T 2adc_A 219 HLRVSFSKST 228 (229)
T ss_dssp BCEEEECSSC
T ss_pred eEEEEEecCC
Confidence 8999999764
No 191
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.63 E-value=1.2e-15 Score=122.32 Aligned_cols=82 Identities=26% Similarity=0.376 Sum_probs=75.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|+++|++||.|..++++.++ .++.++|||||+|.+.++|.+|++.||+..+.+ +.
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~---~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g-----~~ 166 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSE---RTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGP-----RT 166 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT---TTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT-----EE
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeC---CCCccceEEEEEECCHHHHHHHHHHhCCCEeCC-----cE
Confidence 5899999999999999999999999999999998876 578899999999999999999999999999966 58
Q ss_pred eEEEeecCCC
Q 030465 157 LRLQFSRNPG 166 (177)
Q Consensus 157 l~V~~a~~~~ 166 (177)
|+|+|+..+.
T Consensus 167 i~v~~a~~~~ 176 (284)
T 3smz_A 167 LYVHWTDAGQ 176 (284)
T ss_dssp CEEEECCGGG
T ss_pred EEEEECCCCC
Confidence 9999997653
No 192
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.63 E-value=3.6e-16 Score=118.94 Aligned_cols=76 Identities=21% Similarity=0.332 Sum_probs=69.6
Q ss_pred CCeEEEcCCCC-CCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 77 SSTLYVEGLPA-DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 77 ~~tLfV~nLp~-~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
+++|||+|||+ ++|+++|+++|++||.|.+|+++.++ +|||||+|.+.++|++|++.||+..+.+ +
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~--------~g~afV~f~~~~~a~~A~~~l~~~~~~g-----~ 69 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--------KENALVQMADGNQAQLAMSHLNGHKLHG-----K 69 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC--------SSCCEEECTTTHHHHHHHHHHTTCCCSS-----C
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC--------CCEEEEEECCHHHHHHHHHHhCCCeecC-----e
Confidence 68999999999 99999999999999999999998764 4699999999999999999999999966 4
Q ss_pred ceEEEeecCC
Q 030465 156 FLRLQFSRNP 165 (177)
Q Consensus 156 ~l~V~~a~~~ 165 (177)
.|+|+|++.+
T Consensus 70 ~l~v~~a~~~ 79 (198)
T 1qm9_A 70 PIRITLSKHQ 79 (198)
T ss_dssp CCEEEECCCC
T ss_pred EEEEEEecCC
Confidence 7999999754
No 193
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.62 E-value=1.7e-15 Score=120.69 Aligned_cols=83 Identities=17% Similarity=0.176 Sum_probs=73.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhC-CCeeCCCCCCCc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ-GYRMDEDDPDSK 155 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~-g~~l~~~~~~~r 155 (177)
.++|||+|||+++|+++|+++|+.||.|.+|+|+.+. +|+++|||||+|.+.++|.+|++.|| +..+... .+|
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~----~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~--~~r 169 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD----RGRATGKGFVEFAAKPPARKALERCGDGAFLLTT--TPR 169 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET----TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSS--SCC
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC----CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecC--CCc
Confidence 6899999999999999999999999999999999884 68899999999999999999999995 5554433 357
Q ss_pred ceEEEeecCC
Q 030465 156 FLRLQFSRNP 165 (177)
Q Consensus 156 ~l~V~~a~~~ 165 (177)
+|.|+++...
T Consensus 170 ~i~v~~~~~~ 179 (261)
T 3sde_A 170 PVIVEPMEQF 179 (261)
T ss_dssp BCEEEECCCE
T ss_pred eEEEeecccc
Confidence 8999998764
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.62 E-value=1.3e-15 Score=121.29 Aligned_cols=74 Identities=24% Similarity=0.391 Sum_probs=67.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
.++|||+|||+++|+++|+++|+.||.|.+|++..+ +|||||+|.+.++|++|+..||+..|.+ +.
T Consensus 22 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---------kg~afV~f~~~~~A~~A~~~l~g~~i~g-----~~ 87 (261)
T 3sde_A 22 RCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD---------RGFGFIRLESRTLAEIAKAELDGTILKS-----RP 87 (261)
T ss_dssp GGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT---------TTEEEEECSSHHHHHHHHHHHTTCEETT-----EE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC---------CcEEEEEECCHHHHHHHHHHcCCcEECC-----ce
Confidence 689999999999999999999999999999998654 3799999999999999999999999966 58
Q ss_pred eEEEeecC
Q 030465 157 LRLQFSRN 164 (177)
Q Consensus 157 l~V~~a~~ 164 (177)
|+|+|+..
T Consensus 88 l~v~~a~~ 95 (261)
T 3sde_A 88 LRIRFATH 95 (261)
T ss_dssp CEEEECCC
T ss_pred eEeeeccc
Confidence 99999854
No 195
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.60 E-value=1.2e-16 Score=119.11 Aligned_cols=82 Identities=17% Similarity=0.310 Sum_probs=68.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCC
Q 030465 75 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 154 (177)
Q Consensus 75 ~~~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~ 154 (177)
.+.++|||+|||+++|+++|+++|++||.+..+.+ .+. .+++++|||||+|.+.++|++|+ .||+..+.+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~-~~~---~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----- 80 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAV-VDV---RTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFG----- 80 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCC-CEE---EEETTTTEEEEEESSHHHHHHHH-HGGGEEETT-----
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEE-EEC---CCCccccEEEEEECCHHHHHHHH-hcCCCEeCC-----
Confidence 34799999999999999999999999987765322 222 35778899999999999999999 599999976
Q ss_pred cceEEEeecCCC
Q 030465 155 KFLRLQFSRNPG 166 (177)
Q Consensus 155 r~l~V~~a~~~~ 166 (177)
+.|+|++++.+.
T Consensus 81 ~~l~v~~~~~~~ 92 (175)
T 1fje_B 81 NEIKLEKPKGRD 92 (175)
T ss_dssp EEEEEECCCCSS
T ss_pred eEEEEecCCCcc
Confidence 589999997653
No 196
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.59 E-value=2.8e-15 Score=124.34 Aligned_cols=81 Identities=15% Similarity=0.163 Sum_probs=67.9
Q ss_pred CCCCCCCeEEEcC--CCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCC
Q 030465 72 LPPDASSTLYVEG--LPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 149 (177)
Q Consensus 72 ~p~~~~~tLfV~n--Lp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~ 149 (177)
.+..++++|||+| |++.+||++|+++|++||.|.+|.+.. +||||||+|.+.++|++|++.|||..+.+
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~---------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~ 83 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---------NKPYSFARYRTTEESKRAYVTLNGKEVVD 83 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT---------TCSEEEEEESSHHHHHHHHHHTTTCEEEC
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---------CCCEEEEEECCHHHHHHHHHHhCCCcccc
Confidence 3344589999999 588999999999999999999887743 24799999999999999999999999954
Q ss_pred CCCCCc--ceEEEeec
Q 030465 150 DDPDSK--FLRLQFSR 163 (177)
Q Consensus 150 ~~~~~r--~l~V~~a~ 163 (177)
. .++ +|.|.|++
T Consensus 84 ~--~g~~~~ly~~~~~ 97 (345)
T 3tht_A 84 D--LGQKITLYLNFVE 97 (345)
T ss_dssp T--TSCEEECEEEECS
T ss_pred c--cCCceEEEEEEee
Confidence 3 233 58888884
No 197
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.57 E-value=7.7e-15 Score=102.13 Aligned_cols=81 Identities=12% Similarity=0.158 Sum_probs=68.2
Q ss_pred CCeEEEcCC--CCCCC--------HHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCe
Q 030465 77 SSTLYVEGL--PADST--------KREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYR 146 (177)
Q Consensus 77 ~~tLfV~nL--p~~~t--------e~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~ 146 (177)
+++|.|.|+ |.++. +++|+++|++||.|.+|+|+.++.. ..++++||+||+|.+.++|++|++.|||..
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~-~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDG-VEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTT-BCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCC-CCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 789999998 44443 3689999999999999999877522 124678999999999999999999999999
Q ss_pred eCCCCCCCcceEEEeec
Q 030465 147 MDEDDPDSKFLRLQFSR 163 (177)
Q Consensus 147 l~~~~~~~r~l~V~~a~ 163 (177)
+.+ |+|+|+|+.
T Consensus 84 f~G-----R~i~v~~~~ 95 (105)
T 3v4m_A 84 FAN-----RVVVTKYCD 95 (105)
T ss_dssp ETT-----EECEEEEEC
T ss_pred eCC-----CEEEEEEeC
Confidence 965 689999974
No 198
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.57 E-value=3.7e-15 Score=119.81 Aligned_cols=80 Identities=16% Similarity=0.245 Sum_probs=68.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCC-CEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFV-GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 155 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G-~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r 155 (177)
.++|||+|||+++|+++|+++|++|| .|..|+++.++ .+.++|||||+|.+.++|++|++.||+..+.+ +
T Consensus 117 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~----~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 187 (292)
T 2ghp_A 117 ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR----FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEG-----Y 187 (292)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-----------CCEEEEECSSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC----CCCcceEEEEEECCHHHHHHHHHHhCCCEeCC-----c
Confidence 78999999999999999999999999 99999998875 37788999999999999999999999999966 5
Q ss_pred ceEEEeecCC
Q 030465 156 FLRLQFSRNP 165 (177)
Q Consensus 156 ~l~V~~a~~~ 165 (177)
.|+|+|+...
T Consensus 188 ~l~v~~a~~~ 197 (292)
T 2ghp_A 188 TLVTKVSNPL 197 (292)
T ss_dssp ECEEEECCCC
T ss_pred EEEEEECCCC
Confidence 8999999754
No 199
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2.6e-14 Score=98.73 Aligned_cols=78 Identities=12% Similarity=0.120 Sum_probs=62.4
Q ss_pred CCeEEEcCCC-------CCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCC
Q 030465 77 SSTLYVEGLP-------ADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 149 (177)
Q Consensus 77 ~~tLfV~nLp-------~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~ 149 (177)
.++|-|.... .++|+++|+++|++||.|.+|+|+. +++|||||+|++.++|+.|++.+++ +.+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~--------~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g 79 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS--------KKPGTAVVEFATVKAAELAVQNEVG--LVD 79 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES--------SSSSEEEEEESCHHHHHHHHHTCCB--CSS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc--------CCCCEEEEEECCHHHHHHHHHhcCC--CCC
Confidence 4566665544 4689999999999999999999872 3568999999999999999988655 333
Q ss_pred CCCCCcceEEEeecCCCCCC
Q 030465 150 DDPDSKFLRLQFSRNPGPRS 169 (177)
Q Consensus 150 ~~~~~r~l~V~~a~~~~~r~ 169 (177)
++|+|+|++.+..+.
T Consensus 80 -----~~l~V~~a~~~~~~~ 94 (100)
T 2d9o_A 80 -----NPLKISWLEGQPQDA 94 (100)
T ss_dssp -----SBCEEECSSCCCCCC
T ss_pred -----CeEEEEEccCCCCCC
Confidence 579999998765544
No 200
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.57 E-value=4.3e-15 Score=110.09 Aligned_cols=74 Identities=18% Similarity=0.295 Sum_probs=65.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCC----C-------CEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCC
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPF----V-------GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY 145 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~----G-------~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~ 145 (177)
.++|||+|||+++|+++|+++|++| | .|.++++..+ +|||||+|.+.++|++|+ .||+.
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~---------~g~afV~f~~~~~A~~A~-~~~~~ 73 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---------KNFAFLEFRSVDETTQAM-AFDGI 73 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT---------TTEEEEEESSHHHHHHHG-GGTTC
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC---------CCEEEEEeCCHHHHHHHH-HhCCc
Confidence 6899999999999999999999999 6 6777766443 479999999999999999 89999
Q ss_pred eeCCCCCCCcceEEEeecCC
Q 030465 146 RMDEDDPDSKFLRLQFSRNP 165 (177)
Q Consensus 146 ~l~~~~~~~r~l~V~~a~~~ 165 (177)
.+.+ ++|+|++++..
T Consensus 74 ~~~g-----~~i~v~~~~~~ 88 (172)
T 2g4b_A 74 IFQG-----QSLKIRRPHDY 88 (172)
T ss_dssp EETT-----EECEEECCSSC
T ss_pred EecC-----ceeeecCCccc
Confidence 9966 58999998654
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.55 E-value=2.3e-14 Score=101.84 Aligned_cols=82 Identities=16% Similarity=0.207 Sum_probs=69.3
Q ss_pred CCeEEEcCCC--CCC---CHHHHHHhhCCCCCEEEEEEeecCcc-cCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCC
Q 030465 77 SSTLYVEGLP--ADS---TKREVAHIFRPFVGYKEVRLVIKESK-LRGGDPLILCFVDFENPACAATALSALQGYRMDED 150 (177)
Q Consensus 77 ~~tLfV~nLp--~~~---te~~L~~lF~~~G~i~~v~l~~~~~~-~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~ 150 (177)
+++|+|.|+- .++ .++||+++|++||.|.+|+|+.++.. ..+++++||+||+|.+.++|.+|++.|||..+.+
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G- 98 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG- 98 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT-
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC-
Confidence 7999999983 222 47899999999999999999987621 1245678999999999999999999999999965
Q ss_pred CCCCcceEEEeec
Q 030465 151 DPDSKFLRLQFSR 163 (177)
Q Consensus 151 ~~~~r~l~V~~a~ 163 (177)
|.|+|+|+.
T Consensus 99 ----R~i~v~~~~ 107 (118)
T 3ue2_A 99 ----RKVVAEVYD 107 (118)
T ss_dssp ----EECEEEEEC
T ss_pred ----cEEEEEEcC
Confidence 689999974
No 202
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.55 E-value=1.8e-15 Score=105.16 Aligned_cols=73 Identities=15% Similarity=0.222 Sum_probs=63.1
Q ss_pred EEcCCCCCCCHHHHHHhh------------CCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeC
Q 030465 81 YVEGLPADSTKREVAHIF------------RPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMD 148 (177)
Q Consensus 81 fV~nLp~~~te~~L~~lF------------~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~ 148 (177)
++.+||+++++++|+++| ++||.|.+|+|+.++ .++++|||||+|.+.++|++|++.|||..+.
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~----~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~ 94 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL----GDHLVGNVYVKFRREEDAEKAVIDLNNRWFN 94 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS----SSSSEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC----CCCccEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 356778888888887766 999999999998765 4789999999999999999999999999996
Q ss_pred CCCCCCcceEEEee
Q 030465 149 EDDPDSKFLRLQFS 162 (177)
Q Consensus 149 ~~~~~~r~l~V~~a 162 (177)
+ |+|+|+|+
T Consensus 95 G-----r~i~v~~s 103 (104)
T 1jmt_A 95 G-----QPIHAELS 103 (104)
T ss_dssp T-----EECCEEEC
T ss_pred C-----EEEEEEEc
Confidence 6 68999987
No 203
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.55 E-value=7.4e-15 Score=111.16 Aligned_cols=74 Identities=18% Similarity=0.289 Sum_probs=64.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCC----C-------CEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCC
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPF----V-------GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY 145 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~----G-------~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~ 145 (177)
+++|||+|||+++|+++|+++|++| | .|.++++.. ++|||||+|.+.++|++|+ .||+.
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~---------~~g~afV~F~~~~~A~~Al-~l~g~ 73 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ---------DKNFAFLEFRSVDETTQAM-AFDGI 73 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET---------TTTEEEEEESCSHHHHHHG-GGTTE
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC---------CCCEEEEEeCCHHHHHHHH-HhcCC
Confidence 6899999999999999999999999 5 566665533 4579999999999999999 89999
Q ss_pred eeCCCCCCCcceEEEeecCC
Q 030465 146 RMDEDDPDSKFLRLQFSRNP 165 (177)
Q Consensus 146 ~l~~~~~~~r~l~V~~a~~~ 165 (177)
.|.+ +.|+|++++..
T Consensus 74 ~~~g-----~~i~v~~~~~~ 88 (198)
T 2yh0_A 74 IFQG-----QSLKIRRPHDY 88 (198)
T ss_dssp EETT-----EEEEEECCCCC
T ss_pred EEcC-----ceEEEeCCCCC
Confidence 9966 58999998764
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.44 E-value=5.3e-13 Score=94.17 Aligned_cols=77 Identities=16% Similarity=0.144 Sum_probs=63.8
Q ss_pred CCCCeEEEcCCCC--CC--------CHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCC
Q 030465 75 DASSTLYVEGLPA--DS--------TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQG 144 (177)
Q Consensus 75 ~~~~tLfV~nLp~--~~--------te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g 144 (177)
.++++|.+.|+=. +. .+++|+++|++||.|.+|.|..+. ++||+||+|.+.++|++|++.|||
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~-------~~G~~fV~f~~~e~A~~Ai~~lnG 77 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS-------AQGNVYVKCPSIAAAIAAVNALHG 77 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC-------TTCCEEEECSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC-------CcEEEEEEECCHHHHHHHHHHhCC
Confidence 3478999999832 21 245889999999999999885542 478999999999999999999999
Q ss_pred CeeCCCCCCCcceEEEeec
Q 030465 145 YRMDEDDPDSKFLRLQFSR 163 (177)
Q Consensus 145 ~~l~~~~~~~r~l~V~~a~ 163 (177)
..+.+ |.|+|+|+.
T Consensus 78 ~~f~G-----R~i~v~~~~ 91 (114)
T 3s6e_A 78 RWFAG-----KMITAAYVP 91 (114)
T ss_dssp CEETT-----EECEEEEEC
T ss_pred CEECC-----EEEEEEEEc
Confidence 99966 689999974
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=3.8e-11 Score=85.32 Aligned_cols=72 Identities=11% Similarity=0.111 Sum_probs=62.2
Q ss_pred CCeEEEcCCCCC-CCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecC-HHHHHHHHHHhC--CCeeCCCCC
Q 030465 77 SSTLYVEGLPAD-STKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFEN-PACAATALSALQ--GYRMDEDDP 152 (177)
Q Consensus 77 ~~tLfV~nLp~~-~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~-~~~A~~Ai~~l~--g~~l~~~~~ 152 (177)
++.|||+||+++ +++++|+++|++||.|..|.++.+. . .|||.|.+ ..+|..|++.|| +..|.+.
T Consensus 18 G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~---~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~-- 86 (121)
T 1owx_A 18 GCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA---K------EGIILFKEKAKEALGKAKDANNGNLQLRNK-- 86 (121)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC---S------EEEEEESSCHHHHHHHHHHTTTSCBCTTSS--
T ss_pred CeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC---C------EEEEEECCChHHHHHHHHHhhcCCcEEeCc--
Confidence 899999999999 9999999999999999999998775 1 69999999 899999999995 6666553
Q ss_pred CCcceEEEee
Q 030465 153 DSKFLRLQFS 162 (177)
Q Consensus 153 ~~r~l~V~~a 162 (177)
.++++..
T Consensus 87 ---~~~~evL 93 (121)
T 1owx_A 87 ---EVTWEVL 93 (121)
T ss_dssp ---SEEEEEC
T ss_pred ---EEEEEEC
Confidence 5676653
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=1.9e-11 Score=82.34 Aligned_cols=72 Identities=19% Similarity=0.259 Sum_probs=60.6
Q ss_pred CCeEEEcCCCC----CCCH----HHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeC
Q 030465 77 SSTLYVEGLPA----DSTK----REVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMD 148 (177)
Q Consensus 77 ~~tLfV~nLp~----~~te----~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~ 148 (177)
..||+|..++. +..+ .+|.+.|++||.|..++++.++ +||+|.+.++|.+|++ |||+.+.
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~-----------~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK-----------MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS-----------EEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC-----------EEEEECChHHHHHHHh-cCCeEeC
Confidence 47888887762 3333 5799999999999999998874 8999999999999998 9999996
Q ss_pred CCCCCCcceEEEeecCC
Q 030465 149 EDDPDSKFLRLQFSRNP 165 (177)
Q Consensus 149 ~~~~~~r~l~V~~a~~~ 165 (177)
+ |.|+|+++++.
T Consensus 75 G-----r~LkV~lkt~d 86 (91)
T 2dnr_A 75 N-----RTITIALKSPS 86 (91)
T ss_dssp T-----EEEEEEECCCS
T ss_pred C-----eEEEEEeCCCC
Confidence 6 68999998653
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=2.4e-10 Score=77.36 Aligned_cols=69 Identities=14% Similarity=0.231 Sum_probs=58.5
Q ss_pred CCeEEEcCCCCC-----CCH----HHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCee
Q 030465 77 SSTLYVEGLPAD-----STK----REVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRM 147 (177)
Q Consensus 77 ~~tLfV~nLp~~-----~te----~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l 147 (177)
..||+|..++.+ ..+ .+|.+.|++||.|..++++.++ +||+|.+.+.|.+||+ |||+++
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-----------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-----------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-----------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-----------EEEEEcChHHHHHHHh-cCCeee
Confidence 578999888743 222 4688999999999999999874 9999999999999998 999999
Q ss_pred CCCCCCCcceEEEee
Q 030465 148 DEDDPDSKFLRLQFS 162 (177)
Q Consensus 148 ~~~~~~~r~l~V~~a 162 (177)
.+ |.|+|++-
T Consensus 83 ~G-----r~L~V~~k 92 (95)
T 1ufw_A 83 KG-----RAVKISGP 92 (95)
T ss_dssp TT-----EEEEEECC
T ss_pred CC-----eEEEEecc
Confidence 66 68999864
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.00 E-value=1.5e-09 Score=83.97 Aligned_cols=70 Identities=16% Similarity=0.201 Sum_probs=59.9
Q ss_pred CCHHHHHHhhCCCCCEEEEEEeecCc-ccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcceEEEeec
Q 030465 89 STKREVAHIFRPFVGYKEVRLVIKES-KLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFSR 163 (177)
Q Consensus 89 ~te~~L~~lF~~~G~i~~v~l~~~~~-~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~l~V~~a~ 163 (177)
-.+++|++.|++||.|.++.|..+.. ...++.++|++||+|.+.++|.+|++.|||..+.+ |.|+|+|+.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g-----r~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG-----RKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSS-----SBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECC-----eEEEEEEcC
Confidence 45778999999999999999986542 12456899999999999999999999999999966 689999973
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.67 E-value=5.8e-08 Score=67.16 Aligned_cols=70 Identities=16% Similarity=0.187 Sum_probs=63.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCC-----CCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCC
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPF-----VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 151 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~-----G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~ 151 (177)
.++|-+-|||..+++..|+.|++++ |.|+++.++++. +-|+|+|.|...|.+|.-.|+|++|.+
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH---------~GAivef~d~~~AgKasLaL~G~ef~g-- 89 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF---------NGAIIIFRDSKFAAKMLMILNGSQFQG-- 89 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT---------TEEEEECSCHHHHHHHHHHHSSEEETT--
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC---------CceEEEEccchhhHHHHhhcCCeeecC--
Confidence 5899999999999999999999999 999999999886 259999999999999999999999965
Q ss_pred CCCcceEEE
Q 030465 152 PDSKFLRLQ 160 (177)
Q Consensus 152 ~~~r~l~V~ 160 (177)
|+|++.
T Consensus 90 ---r~Lr~g 95 (117)
T 2l9w_A 90 ---KVIRSG 95 (117)
T ss_dssp ---EEEEEE
T ss_pred ---eEEEec
Confidence 578875
No 210
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.23 E-value=6.7e-06 Score=55.63 Aligned_cols=55 Identities=16% Similarity=0.335 Sum_probs=48.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhC
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ 143 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~ 143 (177)
...++| ..|+++...||.++|+.||.|. |+.+.+. -|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT----------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT----------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT----------EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC----------eEEEEecCHHHHHHHHHhcc
Confidence 466777 9999999999999999999665 7788775 79999999999999998774
No 211
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.16 E-value=2.6e-05 Score=52.33 Aligned_cols=87 Identities=14% Similarity=0.223 Sum_probs=67.0
Q ss_pred CeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcce
Q 030465 78 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 157 (177)
Q Consensus 78 ~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~l 157 (177)
++|.|.+||+.+||+++.+.++....+.....+..+.... -..-.-|||.|.+.+++..-.+.++|+.+.+.+-+..+-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~-~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a 80 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLY-PHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPA 80 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSST-TCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCC-CCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeee
Confidence 5789999999999999999999988777666666542211 112246999999999999999999999998874323356
Q ss_pred EEEeecCC
Q 030465 158 RLQFSRNP 165 (177)
Q Consensus 158 ~V~~a~~~ 165 (177)
.|+||-.+
T Consensus 81 ~VE~AP~q 88 (91)
T 1uw4_A 81 IVEFAPFQ 88 (91)
T ss_dssp EEEECSSC
T ss_pred EEEEcCCC
Confidence 78888543
No 212
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.02 E-value=8.1e-06 Score=55.95 Aligned_cols=75 Identities=20% Similarity=0.208 Sum_probs=61.5
Q ss_pred CCeEEEcCCCCCC-C----HHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCC
Q 030465 77 SSTLYVEGLPADS-T----KREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 151 (177)
Q Consensus 77 ~~tLfV~nLp~~~-t----e~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~ 151 (177)
.++|+|.||+.++ + .++++++|..|+.+........-. =..|.|.+.++|.+|...||++.+.++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR---------Rirv~F~~~~~A~~AR~~Lh~~~f~g~- 74 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK---------RVRINFSNPLSAADARLRLHKTEFLGK- 74 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT---------EEEEECSSTTHHHHHHHTSTTSEETTE-
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce---------EEEEEeCChHHHHHHHHHhccceecCc-
Confidence 4789999998865 2 257799999999888776665431 368999999999999999999999774
Q ss_pred CCCcceEEEeecCC
Q 030465 152 PDSKFLRLQFSRNP 165 (177)
Q Consensus 152 ~~~r~l~V~~a~~~ 165 (177)
.|+|-|+...
T Consensus 75 ----~~r~YFgq~~ 84 (104)
T 1wey_A 75 ----EMKLYFAQTL 84 (104)
T ss_dssp ----ECEEECCCCS
T ss_pred ----eeEEEecCCC
Confidence 7999999744
No 213
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.94 E-value=1.4e-05 Score=54.23 Aligned_cols=54 Identities=17% Similarity=0.338 Sum_probs=46.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhC
Q 030465 78 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ 143 (177)
Q Consensus 78 ~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~ 143 (177)
..++| ..|+++...||.++|+.||.| .|+.+.+. -|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT----------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT----------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT----------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC----------eEEEEecCHHHHHHHHHhcc
Confidence 45666 999999999999999999954 47888775 79999999999999999875
No 214
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.74 E-value=0.00011 Score=49.81 Aligned_cols=87 Identities=16% Similarity=0.222 Sum_probs=62.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 156 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~~~r~ 156 (177)
+-+|.|..||+.+||+++.+.++..-.+.....+..+.... -..-.-|||.|.+.++...-.+.++|+.+.+.+-+.-+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~-~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLY-PHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSC-CSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCC-CCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 56899999999999999999888765543333333221110 01113589999999999999999999999887433346
Q ss_pred eEEEeecC
Q 030465 157 LRLQFSRN 164 (177)
Q Consensus 157 l~V~~a~~ 164 (177)
-.|+||-.
T Consensus 88 a~VE~APy 95 (97)
T 2l08_A 88 AVVEFAPF 95 (97)
T ss_dssp EEEEECCC
T ss_pred eEEEecCC
Confidence 77888854
No 215
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.70 E-value=0.00014 Score=49.68 Aligned_cols=67 Identities=18% Similarity=0.147 Sum_probs=51.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCC-----CCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCC
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPF-----VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 151 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~-----G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~ 151 (177)
.++|.|.|||+++.++.|+-+|++- |.|.+++... . -|+|+|.+...|+..++. ..+.|.+.
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-~----------~AvItF~d~~va~rVL~k-~~H~L~~~- 74 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-C----------GGVLTFREPADAERVLAQ-ADHELHGA- 74 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-T----------EEEEEESSHHHHHHHHTC-SCCBSSSS-
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-C----------cEEEEEcChHHHHHHhcC-CcceecCe-
Confidence 6899999999999999999999872 5677776644 2 599999999999988753 23455443
Q ss_pred CCCcceEEE
Q 030465 152 PDSKFLRLQ 160 (177)
Q Consensus 152 ~~~r~l~V~ 160 (177)
+|.|.
T Consensus 75 ----~LsV~ 79 (104)
T 2dhx_A 75 ----QLSLR 79 (104)
T ss_dssp ----BCEEE
T ss_pred ----EEEEE
Confidence 56664
No 216
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.72 E-value=0.0064 Score=42.52 Aligned_cols=62 Identities=18% Similarity=0.205 Sum_probs=49.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCC
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 149 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~ 149 (177)
.+.|.|-..|+... +.+-+.|++||.|.+...... + -+-+|.|+++.+|++|| ..||..|.+
T Consensus 24 ~~wVtVFGFp~~~~-~~VL~~F~~~G~Iv~~~~~~~------~---NWihI~Y~s~~~A~rAL-~kNG~ii~g 85 (119)
T 1wwh_A 24 DTWVTVFGFPQASA-SYILLQFAQYGNILKHVMSNT------G---NWMHIRYQSKLQARKAL-SKDGRIFGE 85 (119)
T ss_dssp GGEEEEECCCGGGH-HHHHHHHHTTSCEEEEEECSS------S---SEEEEEESSHHHHHHHH-TTTTCEETT
T ss_pred CCEEEEECCCHHHH-HHHHHHHHhhCcEEEeccCCC------C---CeEEEEeCCHHHHHHHH-HhCCeEecC
Confidence 57899999999864 455578999999998776211 1 29999999999999999 569999975
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.62 E-value=0.00081 Score=57.54 Aligned_cols=54 Identities=11% Similarity=0.176 Sum_probs=41.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHH
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATAL 139 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai 139 (177)
.++|||. .|..+++.+|.+.|++||.|.++.+..++ | -||.|||.+.+++..++
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g---~~~~vef~~~~~~~~~~ 106 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----G---LYAVVEFCQKESIGSLQ 106 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----S---EEEEEECC---CCHHHH
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----C---eEEEEEeCCHHHHHHHH
Confidence 5899997 79999999999999999999998776554 2 49999999999988664
No 218
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.27 E-value=0.0033 Score=45.22 Aligned_cols=35 Identities=9% Similarity=0.026 Sum_probs=28.2
Q ss_pred EEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCC
Q 030465 106 EVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY 145 (177)
Q Consensus 106 ~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~ 145 (177)
.++|+.+. .+++||+||+|.+.++|++|++.+++.
T Consensus 2 ~~kl~ln~-----~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNG-----KTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEEC-----SSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecC-----ccccchhHHHHHHHHhHHHHHHhhccc
Confidence 35566654 468899999999999999999888753
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.12 E-value=0.0077 Score=43.02 Aligned_cols=41 Identities=10% Similarity=-0.032 Sum_probs=35.8
Q ss_pred CCCcceEEEEEecCHHHHHHHHHHh-CCCeeCCCCCCCcceEEEeecC
Q 030465 118 GGDPLILCFVDFENPACAATALSAL-QGYRMDEDDPDSKFLRLQFSRN 164 (177)
Q Consensus 118 ~g~~kg~afV~f~~~~~A~~Ai~~l-~g~~l~~~~~~~r~l~V~~a~~ 164 (177)
+.+.+|+++|+|.+.++|++|++.+ |+..+++ .|+++++..
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G------~~~~~~a~~ 50 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG------EWTYDDATK 50 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC------EEEEETTTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC------ceecccccC
Confidence 3567899999999999999999999 9999976 499998764
No 220
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.97 E-value=0.064 Score=46.30 Aligned_cols=55 Identities=16% Similarity=0.342 Sum_probs=46.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhC
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ 143 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~ 143 (177)
...++|+ +|..+...+|.++|+.||.+ +|+.+.+. .|||.|.+.+.|..+++.++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt----------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT----------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS----------EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC----------eEEEEECCHHHHHHHHHHHH
Confidence 4567776 88899999999999999954 46666654 79999999999999999886
No 221
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.77 E-value=0.048 Score=38.65 Aligned_cols=71 Identities=18% Similarity=0.257 Sum_probs=46.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEE-EEEee---------cCcccCCC-CcceEEEEEecCHHHHHHHHHHhCCC
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKE-VRLVI---------KESKLRGG-DPLILCFVDFENPACAATALSALQGY 145 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~-v~l~~---------~~~~~~~g-~~kg~afV~f~~~~~A~~Ai~~l~g~ 145 (177)
...|.|-..|++.+..-| +.|++||.|.+ +.... .+.+.-.. ....|-.|+|++..+|.+|| ..||.
T Consensus 7 e~~VtVFGFp~~~~~~VI-~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMANQVI-AYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGA 84 (132)
T ss_dssp -CEEEEECCCGGGHHHHH-HHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTC
T ss_pred ceEEEEEecCHHHHHHHH-HHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCe
Confidence 466788888887776655 68999999876 21110 00000000 01248899999999999999 68999
Q ss_pred eeCC
Q 030465 146 RMDE 149 (177)
Q Consensus 146 ~l~~ 149 (177)
.|.+
T Consensus 85 ii~G 88 (132)
T 3p3d_A 85 VFNG 88 (132)
T ss_dssp EETT
T ss_pred EeCc
Confidence 9866
No 222
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=80.02 E-value=0.35 Score=32.62 Aligned_cols=17 Identities=18% Similarity=0.415 Sum_probs=0.0
Q ss_pred CCeEEEcCCCCCCCHHH
Q 030465 77 SSTLYVEGLPADSTKRE 93 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~ 93 (177)
.++|||+|||+++|++.
T Consensus 97 ~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 97 FTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -----------------
T ss_pred CCceEeCCCCCCccccc
Confidence 56799999999999874
No 223
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=69.33 E-value=17 Score=22.21 Aligned_cols=68 Identities=12% Similarity=0.194 Sum_probs=42.0
Q ss_pred eEEEcCC-CCCCCHHHHHHhhCCCCC-----EEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCCCC
Q 030465 79 TLYVEGL-PADSTKREVAHIFRPFVG-----YKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 152 (177)
Q Consensus 79 tLfV~nL-p~~~te~~L~~lF~~~G~-----i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~l~~~~~ 152 (177)
+|||..= -..++..+|..++..-+. |-.|++..+ |.||+-.. ..++.+++.|++..+.+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~-----------~s~v~v~~-~~~~~~~~~l~~~~i~g~-- 67 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN-----------ASYVEILN-GKGPHVLKVMKNTTVKGK-- 67 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS-----------CEEEEECT-TCHHHHHHHHTTCCC-----
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC-----------cEEEEECH-HHHHHHHHHhccccCcCc--
Confidence 5666322 234677777777765544 345565432 78999875 568889999999998664
Q ss_pred CCcceEEEeec
Q 030465 153 DSKFLRLQFSR 163 (177)
Q Consensus 153 ~~r~l~V~~a~ 163 (177)
.++|+.++
T Consensus 68 ---~~~v~~~~ 75 (76)
T 2g0c_A 68 ---QLKVNKAN 75 (76)
T ss_dssp ---CCCEEECC
T ss_pred ---eEEEEECC
Confidence 68887664
No 224
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=57.20 E-value=24 Score=25.81 Aligned_cols=48 Identities=17% Similarity=0.188 Sum_probs=33.8
Q ss_pred eEEEcCCCCC---------CCHHHHHHhh--CCCCCEEEEEEeecCcccCCCCcceEEEEEecCH
Q 030465 79 TLYVEGLPAD---------STKREVAHIF--RPFVGYKEVRLVIKESKLRGGDPLILCFVDFENP 132 (177)
Q Consensus 79 tLfV~nLp~~---------~te~~L~~lF--~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~ 132 (177)
++.|-|+|.. ...++|++.| ..|.++. ++.+... .-+.|++.|+|.+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~-----~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY-----LGHSGTAIVEFNKD 72 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS-----SBEEEEEEEECCSS
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC-----CCCceeEEEEecCC
Confidence 5667788862 4457899977 9998766 5555554 22568999999873
No 225
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=43.63 E-value=35 Score=22.02 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=20.7
Q ss_pred CEEEEEEeecCcccCCCCcceEEEEEecC
Q 030465 103 GYKEVRLVIKESKLRGGDPLILCFVDFEN 131 (177)
Q Consensus 103 ~i~~v~l~~~~~~~~~g~~kg~afV~f~~ 131 (177)
.|+++++..-. ..++.++||-|+|++
T Consensus 5 ~iTdVri~~~~---~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQ---TDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECC---SSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcC---CCCCEEEEEEEEECC
Confidence 47788877664 568899999999986
No 226
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=38.93 E-value=57 Score=18.95 Aligned_cols=54 Identities=19% Similarity=0.171 Sum_probs=39.4
Q ss_pred CeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHH
Q 030465 78 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSA 141 (177)
Q Consensus 78 ~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~ 141 (177)
.++.|.++.-.--...|+..+.. ..|..+.+.... +-+.|+|.+.+...++++.
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~---------~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNE---------AVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSE---------EEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccC---------CEEEEEECCHHHHHHHHHH
Confidence 56888898877777888888888 888888775432 3578888855566666654
No 227
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=38.61 E-value=45 Score=22.11 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=20.7
Q ss_pred CEEEEEEeecCcccCCCCcceEEEEEecC
Q 030465 103 GYKEVRLVIKESKLRGGDPLILCFVDFEN 131 (177)
Q Consensus 103 ~i~~v~l~~~~~~~~~g~~kg~afV~f~~ 131 (177)
.|++|++..-. ..|+.++||-|+|++
T Consensus 5 ~ITdVri~~i~---~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVN---TDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECC---SSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcC---CCCCEEEEEEEEECC
Confidence 47788887665 458899999999986
No 228
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=38.16 E-value=46 Score=22.25 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=20.3
Q ss_pred CEEEEEEeecCcccCCCCcceEEEEEecC
Q 030465 103 GYKEVRLVIKESKLRGGDPLILCFVDFEN 131 (177)
Q Consensus 103 ~i~~v~l~~~~~~~~~g~~kg~afV~f~~ 131 (177)
.|++|++..-. ..|+.++||-|+|++
T Consensus 5 ~iTdVri~~i~---~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQ---TDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECC---SCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeC---CCCCEEEEEEEEECC
Confidence 46777776654 568899999999986
No 229
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=35.42 E-value=12 Score=29.36 Aligned_cols=35 Identities=11% Similarity=0.130 Sum_probs=26.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeec
Q 030465 78 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 112 (177)
Q Consensus 78 ~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~ 112 (177)
..+.|+|||+.++..-|..+++....+..+.++..
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~Q 149 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQ 149 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEee
Confidence 45789999999999999999986555665555443
No 230
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=35.38 E-value=20 Score=27.94 Aligned_cols=33 Identities=15% Similarity=0.349 Sum_probs=25.8
Q ss_pred CeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEee
Q 030465 78 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI 111 (177)
Q Consensus 78 ~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~ 111 (177)
..+.|+|||+.++..-|..++.. ..+....++.
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~ 143 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLV 143 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEe
Confidence 46789999999999999999977 5565554443
No 231
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=32.25 E-value=23 Score=18.98 Aligned_cols=16 Identities=13% Similarity=0.264 Sum_probs=13.3
Q ss_pred CCCCCHHHHHHhhCCC
Q 030465 86 PADSTKREVAHIFRPF 101 (177)
Q Consensus 86 p~~~te~~L~~lF~~~ 101 (177)
-.++|.++|+.+|...
T Consensus 19 ~rd~t~~eLk~il~~m 34 (37)
T 1ik9_C 19 FIDTDLNQLKEVFSGI 34 (37)
T ss_dssp SSCCCHHHHHHHHHTC
T ss_pred cCcCCHHHHHHHHHHc
Confidence 3578999999999875
No 232
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=31.03 E-value=35 Score=26.09 Aligned_cols=33 Identities=12% Similarity=0.182 Sum_probs=24.6
Q ss_pred CeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEe
Q 030465 78 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLV 110 (177)
Q Consensus 78 ~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~ 110 (177)
..+.|+|||+.++...|..+++....+..+.++
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~m 123 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADMHFM 123 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceEEEE
Confidence 358899999999999998888765445544433
No 233
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=29.49 E-value=1.2e+02 Score=19.80 Aligned_cols=55 Identities=16% Similarity=0.140 Sum_probs=43.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHh
Q 030465 77 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSAL 142 (177)
Q Consensus 77 ~~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l 142 (177)
++-|-|-|+|..+-..++.-.....|---.|..+. |.|.+.|.+.++...|+..|
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyid-----------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID-----------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS-----------SCEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec-----------CeeEEEecCChHHHHHHHHH
Confidence 67788899999999888776666666555565543 36999999999999999876
No 234
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=29.23 E-value=80 Score=17.73 Aligned_cols=45 Identities=13% Similarity=0.225 Sum_probs=32.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecC
Q 030465 78 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFEN 131 (177)
Q Consensus 78 ~tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~ 131 (177)
.++.|.++.-.--...++..+.....+..+.+.... +-+.|+|..
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~---------~~~~v~~~~ 48 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFAL---------EQAVVSYHG 48 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTT---------TEEEEEECT
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecC---------CEEEEEECC
Confidence 457788887766677888999988889888775543 257788754
No 235
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=27.68 E-value=74 Score=27.93 Aligned_cols=57 Identities=18% Similarity=0.113 Sum_probs=39.7
Q ss_pred cCCCCCCCHHHHHHhhC----CCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhC
Q 030465 83 EGLPADSTKREVAHIFR----PFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ 143 (177)
Q Consensus 83 ~nLp~~~te~~L~~lF~----~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~ 143 (177)
+..+.+.+--||..+|- .+|-|+++.|.... --+.+.++++.|.+.++|.+++..+-
T Consensus 349 ~~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P----~P~~~~~~~~~f~d~~~a~~av~~i~ 409 (658)
T 4bby_A 349 CQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRP----TPEYQKYGSVAFPNFEQGVACLREIA 409 (658)
T ss_dssp CCCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEE----CCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred ccccccCCCcCHHHHhccCCCcCcceeeeeeeecc----CCccccccccccCCchhhhhhHHHHH
Confidence 34556666668888884 67888887665432 12233478999999999999887664
No 236
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=26.09 E-value=14 Score=28.37 Aligned_cols=34 Identities=15% Similarity=0.308 Sum_probs=26.2
Q ss_pred eEEEcCCCCCCCHHHHHHhhCCCCCEEEEEEeec
Q 030465 79 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 112 (177)
Q Consensus 79 tLfV~nLp~~~te~~L~~lF~~~G~i~~v~l~~~ 112 (177)
-..|+|||+.++...|..+++....+..+.++..
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~lm~Q 131 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQ 131 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEEEEe
Confidence 3489999999999999999987666665555443
No 237
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=25.56 E-value=17 Score=25.76 Aligned_cols=28 Identities=7% Similarity=0.017 Sum_probs=15.0
Q ss_pred HHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEec
Q 030465 92 REVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFE 130 (177)
Q Consensus 92 ~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~ 130 (177)
+|+.+||...|.|+ +... .|||+||+-+
T Consensus 2 ~~~~~l~~~~G~Vk---wfn~--------~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICK---WFNV--------RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEE---EEET--------TTTEEEEEEE
T ss_pred CcccccccceeEEE---EEEC--------CCCeeEEeeC
Confidence 46667777666544 3332 2469999875
No 238
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=23.73 E-value=68 Score=27.16 Aligned_cols=43 Identities=12% Similarity=0.049 Sum_probs=27.6
Q ss_pred HHHHhh--CCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHH
Q 030465 93 EVAHIF--RPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATAL 139 (177)
Q Consensus 93 ~L~~lF--~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai 139 (177)
+|..|| +.+|-|+++.+.... .-+....+++.|.+.+++.+++
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p----~p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMP----KPPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEE----CCSEEEEEEEEECCGGGHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEe----cCCeEEEEEEEeCCHHHHHHHH
Confidence 356777 368888888765543 1222345788999877776644
No 239
>3off_A LDLR chaperone BOCA; MESD, molecular chaperone, protein folding, YWTD propeller; 2.00A {Drosophila melanogaster} PDB: 3ofe_A*
Probab=23.17 E-value=1.6e+02 Score=19.05 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=34.7
Q ss_pred eEEEcCCCCCCCHHHHHHh--------hCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHHHHhCCC
Q 030465 79 TLYVEGLPADSTKREVAHI--------FRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY 145 (177)
Q Consensus 79 tLfV~nLp~~~te~~L~~l--------F~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~ 145 (177)
.+||. +..+.|+++..++ |..+=.+ ...++.+. -+.+.|.|-..|-.|.+.|-..
T Consensus 13 MmFV~-v~~~~t~~e~d~lt~lWqtsL~Nnhi~~-~ry~Id~d----------r~ifmf~DGs~a~e~kdfL~~Q 75 (90)
T 3off_A 13 MTFVS-VTGNPTREESDTITKLWQTSLWNNHIQA-ERYMVDDN----------RAIFLFKDGTQAWDAKDFLIEQ 75 (90)
T ss_dssp EEEEE-ESSSCCHHHHHHHHHHHHHHHHHTTCCE-EEEEEETT----------EEEEEESSGGGHHHHHHHHTTS
T ss_pred EEEEE-ecCCCCHHHHHHHHHHHHHHHHhCCeeE-EEEEecCC----------EEEEEEcChHHHHHHHHHHhcC
Confidence 46774 4445666665543 4444222 33344433 4899999999999999887543
No 240
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=22.65 E-value=35 Score=25.94 Aligned_cols=29 Identities=10% Similarity=-0.072 Sum_probs=22.5
Q ss_pred CeEEEcCCCCCCCHHHHHHhhCCCCCEEE
Q 030465 78 STLYVEGLPADSTKREVAHIFRPFVGYKE 106 (177)
Q Consensus 78 ~tLfV~nLp~~~te~~L~~lF~~~G~i~~ 106 (177)
..+.|+|||+.++..-|..+++....+..
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~ 124 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPL 124 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCce
Confidence 45789999999999999998876433333
No 241
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=22.65 E-value=1.9e+02 Score=20.34 Aligned_cols=48 Identities=13% Similarity=0.298 Sum_probs=33.1
Q ss_pred HHHhhCCCCCEEEEEEeecCc------------ccCCCCcceEEEEEecCHHHHHHHHHH
Q 030465 94 VAHIFRPFVGYKEVRLVIKES------------KLRGGDPLILCFVDFENPACAATALSA 141 (177)
Q Consensus 94 L~~lF~~~G~i~~v~l~~~~~------------~~~~g~~kg~afV~f~~~~~A~~Ai~~ 141 (177)
-..+|..||.+..++..-+.- +...+..-.|.+|+|.|.+..+++...
T Consensus 50 a~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~k 109 (141)
T 2okq_A 50 AAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQK 109 (141)
T ss_dssp HHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHH
Confidence 347899999888776555431 111233446999999999999888744
No 242
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=21.88 E-value=31 Score=28.09 Aligned_cols=22 Identities=9% Similarity=0.132 Sum_probs=18.9
Q ss_pred eEEEcCCCCCCCHHHHHHhhCC
Q 030465 79 TLYVEGLPADSTKREVAHIFRP 100 (177)
Q Consensus 79 tLfV~nLp~~~te~~L~~lF~~ 100 (177)
.++|+|||++++..-|..++..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 5789999999999988888763
No 243
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=20.88 E-value=67 Score=26.14 Aligned_cols=50 Identities=18% Similarity=0.084 Sum_probs=34.4
Q ss_pred CeEEEcCCCCCC----CHHHHHHhhCCCCCEEEEEEeecCcccCCCCcceEEEEEecCHHHHHHHH
Q 030465 78 STLYVEGLPADS----TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATAL 139 (177)
Q Consensus 78 ~tLfV~nLp~~~----te~~L~~lF~~~G~i~~v~l~~~~~~~~~g~~kg~afV~f~~~~~A~~Ai 139 (177)
..-+||||..-. ....+.++..+||.|..+++.. .-+|...+.+.+..++
T Consensus 15 ~lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~------------~~~vvv~~p~~~k~il 68 (494)
T 3swz_A 15 SLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGT------------KTTVIVGHHQLAKEVL 68 (494)
T ss_dssp CCCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETT------------EEEEEECSHHHHHHHH
T ss_pred CCCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCC------------CCEEEECCHHHHHHHH
Confidence 344789886432 2456788888999998887632 3456677888877766
Done!