BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030466
         (177 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ATF|A Chain A, X-Ray Structure Of Cysteine Dioxygenase Type I From Mus
           Musculus Mm.241056
 pdb|2Q4S|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
           Cysteine Dioxygenase Type I From Mus Musculus Mm.241056
          Length = 200

 Score = 30.4 bits (67), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 13/41 (31%), Positives = 19/41 (46%)

Query: 28  KFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDW 68
           KF++ I C        +H+H     F KLL G +    +DW
Sbjct: 69  KFNLXILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDW 109


>pdb|1EIZ|A Chain A, Ftsj Rna Methyltransferase Complexed With S-
           Adenosylmethionine
 pdb|1EJ0|A Chain A, Ftsj Rna Methyltransferase Complexed With S-
           Adenosylmethionine, Mercury Derivative
          Length = 180

 Score = 30.4 bits (67), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 8/92 (8%)

Query: 73  PSDTSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGK-----PLAAA 127
           P  T  D    PG  S   V  I G+    A D++P  P+   VD + G       + A 
Sbjct: 22  PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVG-VDFLQGDFRDELVMKAL 80

Query: 128 VDAVPDKNSADVVNDNG-NTSAD-AVDVPSKM 157
           ++ V D     V++D   N S   AVD+P  M
Sbjct: 81  LERVGDSKVQVVMSDMAPNMSGTPAVDIPRAM 112


>pdb|2B5H|A Chain A, 1.5 A Resolution Crystal Structure Of Recombinant R.
           Norvegicus Cysteine Dioxygenase
 pdb|2GH2|A Chain A, 1.5 A Resolution R. Norvegicus Cysteine Dioxygenase
           Structure Crystallized In The Presence Of Cysteine
 pdb|3ELN|A Chain A, A Putative Fe2+-Bound Persulfenate Intermediate In
           Cysteine Dioxygenase
          Length = 200

 Score = 29.6 bits (65), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 13/41 (31%), Positives = 19/41 (46%)

Query: 28  KFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDW 68
           KF++ I C        +H+H     F KLL G +    +DW
Sbjct: 69  KFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDW 109


>pdb|3RM5|A Chain A, Structure Of Trifunctional Thi20 From Yeast
 pdb|3RM5|B Chain B, Structure Of Trifunctional Thi20 From Yeast
          Length = 550

 Score = 27.7 bits (60), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 13/19 (68%)

Query: 117 DVIPGKPLAAAVDAVPDKN 135
           DVIP KPL +A D +P  N
Sbjct: 313 DVIPKKPLKSAADKIPGGN 331


>pdb|3KVO|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
           Hydroxysteroid Dehydrogenase Like 2 (Hsdl2)
 pdb|3KVO|B Chain B, Crystal Structure Of The Catalytic Domain Of Human
           Hydroxysteroid Dehydrogenase Like 2 (Hsdl2)
          Length = 346

 Score = 26.6 bits (57), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 3/61 (4%)

Query: 99  TSAAAVDIIPGKPLAAMVDVIPGKPLAAAVD-AVPDKNSADVVNDNGN--TSADAVDVPS 155
           T+A  ++ + GK L  +VDV   + ++AAV+ A+      D++ +N +  +  + +D P+
Sbjct: 91  TAAEEIEAVGGKALPCIVDVRDEQQISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPT 150

Query: 156 K 156
           K
Sbjct: 151 K 151


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.130    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,645,595
Number of Sequences: 62578
Number of extensions: 221909
Number of successful extensions: 346
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 331
Number of HSP's gapped (non-prelim): 24
length of query: 177
length of database: 14,973,337
effective HSP length: 92
effective length of query: 85
effective length of database: 9,216,161
effective search space: 783373685
effective search space used: 783373685
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)